
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/335541/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/PRAD-TP/2667029/1.GDAC_mergedClustering.Finished/PRAD-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=PRAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=PRAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=178, in cluster file=177, common to both=177
[1]  44 177
[1] "Amp Peak  1(1q21.3) mutation analysis"
[1] 3
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           10                           167 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           10                           167 
[1] "Amp Peak  2(3q26.2) mutation analysis"
[1] 3
  AMP PEAK  2(3Q26.2) MUTATED AMP PEAK  2(3Q26.2) WILD-TYPE 
                           25                           152 
  AMP PEAK  2(3Q26.2) MUTATED AMP PEAK  2(3Q26.2) WILD-TYPE 
                           25                           152 
[1] "Amp Peak  3(7p15.3) mutation analysis"
[1] 3
  AMP PEAK  3(7P15.3) MUTATED AMP PEAK  3(7P15.3) WILD-TYPE 
                           33                           144 
  AMP PEAK  3(7P15.3) MUTATED AMP PEAK  3(7P15.3) WILD-TYPE 
                           33                           144 
[1] "Amp Peak  4(8p11.22) mutation analysis"
[1] 3
  AMP PEAK  4(8P11.22) MUTATED AMP PEAK  4(8P11.22) WILD-TYPE 
                            16                            161 
  AMP PEAK  4(8P11.22) MUTATED AMP PEAK  4(8P11.22) WILD-TYPE 
                            16                            161 
[1] "Amp Peak  5(8q21.13) mutation analysis"
[1] 3
  AMP PEAK  5(8Q21.13) MUTATED AMP PEAK  5(8Q21.13) WILD-TYPE 
                            44                            133 
  AMP PEAK  5(8Q21.13) MUTATED AMP PEAK  5(8Q21.13) WILD-TYPE 
                            44                            133 
[1] "Amp Peak  6(10q21.2) mutation analysis"
[1] 3
  AMP PEAK  6(10Q21.2) MUTATED AMP PEAK  6(10Q21.2) WILD-TYPE 
                            10                            167 
  AMP PEAK  6(10Q21.2) MUTATED AMP PEAK  6(10Q21.2) WILD-TYPE 
                            10                            167 
[1] "Amp Peak  7(12q24.32) mutation analysis"
[1] 3
  AMP PEAK  7(12Q24.32) MUTATED AMP PEAK  7(12Q24.32) WILD-TYPE 
                              7                             170 
  AMP PEAK  7(12Q24.32) MUTATED AMP PEAK  7(12Q24.32) WILD-TYPE 
                              7                             170 
[1] "Amp Peak  8(14q21.1) mutation analysis"
[1] 3
  AMP PEAK  8(14Q21.1) MUTATED AMP PEAK  8(14Q21.1) WILD-TYPE 
                             8                            169 
  AMP PEAK  8(14Q21.1) MUTATED AMP PEAK  8(14Q21.1) WILD-TYPE 
                             8                            169 
[1] "Amp Peak  9(Xp22.11) mutation analysis"
[1] 3
  AMP PEAK  9(XP22.11) MUTATED AMP PEAK  9(XP22.11) WILD-TYPE 
                             5                            172 
  AMP PEAK  9(XP22.11) MUTATED AMP PEAK  9(XP22.11) WILD-TYPE 
                             5                            172 
[1] "Amp Peak 10(Xp22.11) mutation analysis"
[1] 3
  AMP PEAK 10(XP22.11) MUTATED AMP PEAK 10(XP22.11) WILD-TYPE 
                             5                            172 
  AMP PEAK 10(XP22.11) MUTATED AMP PEAK 10(XP22.11) WILD-TYPE 
                             5                            172 
[1] "Amp Peak 11(Xp21.1) mutation analysis"
[1] 3
  AMP PEAK 11(XP21.1) MUTATED AMP PEAK 11(XP21.1) WILD-TYPE 
                            4                           173 
  AMP PEAK 11(XP21.1) MUTATED AMP PEAK 11(XP21.1) WILD-TYPE 
                            4                           173 
[1] "Amp Peak 12(Xq21.1) mutation analysis"
[1] 3
  AMP PEAK 12(XQ21.1) MUTATED AMP PEAK 12(XQ21.1) WILD-TYPE 
                            7                           170 
  AMP PEAK 12(XQ21.1) MUTATED AMP PEAK 12(XQ21.1) WILD-TYPE 
                            7                           170 
[1] "Amp Peak 13(Xq21.1) mutation analysis"
[1] 3
  AMP PEAK 13(XQ21.1) MUTATED AMP PEAK 13(XQ21.1) WILD-TYPE 
                            5                           172 
  AMP PEAK 13(XQ21.1) MUTATED AMP PEAK 13(XQ21.1) WILD-TYPE 
                            5                           172 
[1] "Amp Peak 14(Xq21.31) mutation analysis"
[1] 3
  AMP PEAK 14(XQ21.31) MUTATED AMP PEAK 14(XQ21.31) WILD-TYPE 
                             5                            172 
  AMP PEAK 14(XQ21.31) MUTATED AMP PEAK 14(XQ21.31) WILD-TYPE 
                             5                            172 
[1] "Amp Peak 15(Xq25) mutation analysis"
[1] 3
  AMP PEAK 15(XQ25) MUTATED AMP PEAK 15(XQ25) WILD-TYPE 
                          4                         173 
  AMP PEAK 15(XQ25) MUTATED AMP PEAK 15(XQ25) WILD-TYPE 
                          4                         173 
[1] "Amp Peak 16(Xq25) mutation analysis"
[1] 3
  AMP PEAK 16(XQ25) MUTATED AMP PEAK 16(XQ25) WILD-TYPE 
                          6                         171 
  AMP PEAK 16(XQ25) MUTATED AMP PEAK 16(XQ25) WILD-TYPE 
                          6                         171 
[1] "Amp Peak 17(Xq27.1) mutation analysis"
[1] 3
  AMP PEAK 17(XQ27.1) MUTATED AMP PEAK 17(XQ27.1) WILD-TYPE 
                            9                           168 
  AMP PEAK 17(XQ27.1) MUTATED AMP PEAK 17(XQ27.1) WILD-TYPE 
                            9                           168 
[1] "Del Peak  1(1p31.3) mutation analysis"
[1] 3
  DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE 
                           21                           156 
  DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE 
                           21                           156 
[1] "Del Peak  2(1p21.3) mutation analysis"
[1] 3
  DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE 
                           17                           160 
  DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE 
                           17                           160 
[1] "Del Peak  3(1q23.1) mutation analysis"
[1] 3
  DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE 
                            8                           169 
  DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE 
                            8                           169 
[1] "Del Peak  4(1q42.13) mutation analysis"
[1] 3
  DEL PEAK  4(1Q42.13) MUTATED DEL PEAK  4(1Q42.13) WILD-TYPE 
                            17                            160 
  DEL PEAK  4(1Q42.13) MUTATED DEL PEAK  4(1Q42.13) WILD-TYPE 
                            17                            160 
[1] "Del Peak  5(2q22.1) mutation analysis"
[1] 3
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                           21                           156 
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                           21                           156 
[1] "Del Peak  6(2q22.3) mutation analysis"
[1] 3
  DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE 
                           23                           154 
  DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE 
                           23                           154 
[1] "Del Peak  7(3p13) mutation analysis"
[1] 3
  DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE 
                         28                         149 
  DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE 
                         28                         149 
[1] "Del Peak  8(3q29) mutation analysis"
[1] 3
  DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE 
                         12                         165 
  DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE 
                         12                         165 
[1] "Del Peak  9(4q28.1) mutation analysis"
[1] 3
  DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE 
                           12                           165 
  DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE 
                           12                           165 
[1] "Del Peak 10(5q11.2) mutation analysis"
[1] 3
  DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE 
                           29                           148 
  DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE 
                           29                           148 
[1] "Del Peak 11(5q21.1) mutation analysis"
[1] 3
  DEL PEAK 11(5Q21.1) MUTATED DEL PEAK 11(5Q21.1) WILD-TYPE 
                           31                           146 
  DEL PEAK 11(5Q21.1) MUTATED DEL PEAK 11(5Q21.1) WILD-TYPE 
                           31                           146 
[1] "Del Peak 12(6q15) mutation analysis"
[1] 3
  DEL PEAK 12(6Q15) MUTATED DEL PEAK 12(6Q15) WILD-TYPE 
                         56                         121 
  DEL PEAK 12(6Q15) MUTATED DEL PEAK 12(6Q15) WILD-TYPE 
                         56                         121 
[1] "Del Peak 13(7q36.1) mutation analysis"
[1] 3
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                            8                           169 
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                            8                           169 
[1] "Del Peak 14(8p21.3) mutation analysis"
[1] 3
  DEL PEAK 14(8P21.3) MUTATED DEL PEAK 14(8P21.3) WILD-TYPE 
                          106                            71 
  DEL PEAK 14(8P21.3) MUTATED DEL PEAK 14(8P21.3) WILD-TYPE 
                          106                            71 
[1] "Del Peak 15(8p11.21) mutation analysis"
[1] 3
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                            59                            118 
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                            59                            118 
[1] "Del Peak 16(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                             63                             114 
  DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE 
                             63                             114 
[1] "Del Peak 17(11q23.2) mutation analysis"
[1] 3
  DEL PEAK 17(11Q23.2) MUTATED DEL PEAK 17(11Q23.2) WILD-TYPE 
                            20                            157 
  DEL PEAK 17(11Q23.2) MUTATED DEL PEAK 17(11Q23.2) WILD-TYPE 
                            20                            157 
[1] "Del Peak 18(12p13.2) mutation analysis"
[1] 3
  DEL PEAK 18(12P13.2) MUTATED DEL PEAK 18(12P13.2) WILD-TYPE 
                            38                            139 
  DEL PEAK 18(12P13.2) MUTATED DEL PEAK 18(12P13.2) WILD-TYPE 
                            38                            139 
[1] "Del Peak 19(13q14.13) mutation analysis"
[1] 3
  DEL PEAK 19(13Q14.13) MUTATED DEL PEAK 19(13Q14.13) WILD-TYPE 
                             81                              96 
  DEL PEAK 19(13Q14.13) MUTATED DEL PEAK 19(13Q14.13) WILD-TYPE 
                             81                              96 
[1] "Del Peak 20(16q22.3) mutation analysis"
[1] 3
  DEL PEAK 20(16Q22.3) MUTATED DEL PEAK 20(16Q22.3) WILD-TYPE 
                            57                            120 
  DEL PEAK 20(16Q22.3) MUTATED DEL PEAK 20(16Q22.3) WILD-TYPE 
                            57                            120 
[1] "Del Peak 21(16q24.1) mutation analysis"
[1] 3
  DEL PEAK 21(16Q24.1) MUTATED DEL PEAK 21(16Q24.1) WILD-TYPE 
                            72                            105 
  DEL PEAK 21(16Q24.1) MUTATED DEL PEAK 21(16Q24.1) WILD-TYPE 
                            72                            105 
[1] "Del Peak 22(17p13.1) mutation analysis"
[1] 3
  DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE 
                            45                            132 
  DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE 
                            45                            132 
[1] "Del Peak 23(17q21.31) mutation analysis"
[1] 3
  DEL PEAK 23(17Q21.31) MUTATED DEL PEAK 23(17Q21.31) WILD-TYPE 
                             34                             143 
  DEL PEAK 23(17Q21.31) MUTATED DEL PEAK 23(17Q21.31) WILD-TYPE 
                             34                             143 
[1] "Del Peak 24(18q22.1) mutation analysis"
[1] 3
  DEL PEAK 24(18Q22.1) MUTATED DEL PEAK 24(18Q22.1) WILD-TYPE 
                            44                            133 
  DEL PEAK 24(18Q22.1) MUTATED DEL PEAK 24(18Q22.1) WILD-TYPE 
                            44                            133 
[1] "Del Peak 25(18q23) mutation analysis"
[1] 3
  DEL PEAK 25(18Q23) MUTATED DEL PEAK 25(18Q23) WILD-TYPE 
                          50                          127 
  DEL PEAK 25(18Q23) MUTATED DEL PEAK 25(18Q23) WILD-TYPE 
                          50                          127 
[1] "Del Peak 26(21q22.2) mutation analysis"
[1] 3
  DEL PEAK 26(21Q22.2) MUTATED DEL PEAK 26(21Q22.2) WILD-TYPE 
                            58                            119 
  DEL PEAK 26(21Q22.2) MUTATED DEL PEAK 26(21Q22.2) WILD-TYPE 
                            58                            119 
[1] "Del Peak 27(21q22.3) mutation analysis"
[1] 3
  DEL PEAK 27(21Q22.3) MUTATED DEL PEAK 27(21Q22.3) WILD-TYPE 
                            57                            120 
  DEL PEAK 27(21Q22.3) MUTATED DEL PEAK 27(21Q22.3) WILD-TYPE 
                            57                            120 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "MRNASEQ_CNMF"         
[4] "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 

Input Data has 6 rows and 177 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "MRNASEQ_CNMF"         
[4] "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 177 columns, 0 survival variables, and 6 non-survival variables.
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1q21.3) mutation analysis
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           1                            38
  CLUS_2                           2                            81
  CLUS_3                           7                            47
  CLUS_4                           0                             1
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           3                            50
  CLUS_2                           1                            49
  CLUS_3                           6                            62
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           3                            47
  CLUS_2                           1                            40
  CLUS_3                           4                            45
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           3                            38
  CLUS_2                           3                            40
  CLUS_3                           2                            54
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           5                            40
  CLUS_2                           0                            46
  CLUS_3                           2                            23
  CLUS_4                           3                            57
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           1                            29
  CLUS_2                           4                            65
  CLUS_3                           5                            72

Clustering(2) Variable = Amp Peak  2(3q26.2) mutation analysis
D2V1, multiclass
        clus
vv       AMP PEAK  2(3Q26.2) MUTATED AMP PEAK  2(3Q26.2) WILD-TYPE
  CLUS_1                           7                            32
  CLUS_2                           4                            79
  CLUS_3                          14                            40
  CLUS_4                           0                             1
D2V2, multiclass
        clus
vv       AMP PEAK  2(3Q26.2) MUTATED AMP PEAK  2(3Q26.2) WILD-TYPE
  CLUS_1                          11                            42
  CLUS_2                           5                            45
  CLUS_3                           8                            60
D2V3, multiclass
        clus
vv       AMP PEAK  2(3Q26.2) MUTATED AMP PEAK  2(3Q26.2) WILD-TYPE
  CLUS_1                           9                            41
  CLUS_2                           6                            35
  CLUS_3                           6                            43
D2V4, multiclass
        clus
vv       AMP PEAK  2(3Q26.2) MUTATED AMP PEAK  2(3Q26.2) WILD-TYPE
  CLUS_1                           8                            33
  CLUS_2                           6                            37
  CLUS_3                           7                            49
D2V5, multiclass
        clus
vv       AMP PEAK  2(3Q26.2) MUTATED AMP PEAK  2(3Q26.2) WILD-TYPE
  CLUS_1                           6                            39
  CLUS_2                           7                            39
  CLUS_3                           4                            21
  CLUS_4                           7                            53
D2V6, multiclass
        clus
vv       AMP PEAK  2(3Q26.2) MUTATED AMP PEAK  2(3Q26.2) WILD-TYPE
  CLUS_1                           6                            24
  CLUS_2                          10                            59
  CLUS_3                           8                            69

Clustering(3) Variable = Amp Peak  3(7p15.3) mutation analysis
D3V1, multiclass
        clus
vv       AMP PEAK  3(7P15.3) MUTATED AMP PEAK  3(7P15.3) WILD-TYPE
  CLUS_1                           8                            31
  CLUS_2                           7                            76
  CLUS_3                          18                            36
  CLUS_4                           0                             1
D3V2, multiclass
        clus
vv       AMP PEAK  3(7P15.3) MUTATED AMP PEAK  3(7P15.3) WILD-TYPE
  CLUS_1                          15                            38
  CLUS_2                           6                            44
  CLUS_3                          12                            56
D3V3, multiclass
        clus
vv       AMP PEAK  3(7P15.3) MUTATED AMP PEAK  3(7P15.3) WILD-TYPE
  CLUS_1                          15                            35
  CLUS_2                           4                            37
  CLUS_3                          10                            39
D3V4, multiclass
        clus
vv       AMP PEAK  3(7P15.3) MUTATED AMP PEAK  3(7P15.3) WILD-TYPE
  CLUS_1                          13                            28
  CLUS_2                           8                            35
  CLUS_3                           8                            48
D3V5, multiclass
        clus
vv       AMP PEAK  3(7P15.3) MUTATED AMP PEAK  3(7P15.3) WILD-TYPE
  CLUS_1                           8                            37
  CLUS_2                           7                            39
  CLUS_3                           4                            21
  CLUS_4                          13                            47
D3V6, multiclass
        clus
vv       AMP PEAK  3(7P15.3) MUTATED AMP PEAK  3(7P15.3) WILD-TYPE
  CLUS_1                           4                            26
  CLUS_2                          11                            58
  CLUS_3                          17                            60

Clustering(4) Variable = Amp Peak  4(8p11.22) mutation analysis
D4V1, multiclass
        clus
vv       AMP PEAK  4(8P11.22) MUTATED AMP PEAK  4(8P11.22) WILD-TYPE
  CLUS_1                            4                             35
  CLUS_2                            1                             82
  CLUS_3                           11                             43
  CLUS_4                            0                              1
D4V2, multiclass
        clus
vv       AMP PEAK  4(8P11.22) MUTATED AMP PEAK  4(8P11.22) WILD-TYPE
  CLUS_1                            7                             46
  CLUS_2                            3                             47
  CLUS_3                            6                             62
D4V3, multiclass
        clus
vv       AMP PEAK  4(8P11.22) MUTATED AMP PEAK  4(8P11.22) WILD-TYPE
  CLUS_1                            8                             42
  CLUS_2                            3                             38
  CLUS_3                            3                             46
D4V4, multiclass
        clus
vv       AMP PEAK  4(8P11.22) MUTATED AMP PEAK  4(8P11.22) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            4                             39
  CLUS_3                            4                             52
D4V5, multiclass
        clus
vv       AMP PEAK  4(8P11.22) MUTATED AMP PEAK  4(8P11.22) WILD-TYPE
  CLUS_1                            6                             39
  CLUS_2                            3                             43
  CLUS_3                            1                             24
  CLUS_4                            5                             55
D4V6, multiclass
        clus
vv       AMP PEAK  4(8P11.22) MUTATED AMP PEAK  4(8P11.22) WILD-TYPE
  CLUS_1                            2                             28
  CLUS_2                            4                             65
  CLUS_3                            9                             68

Clustering(5) Variable = Amp Peak  5(8q21.13) mutation analysis
D5V1, multiclass
        clus
vv       AMP PEAK  5(8Q21.13) MUTATED AMP PEAK  5(8Q21.13) WILD-TYPE
  CLUS_1                            9                             30
  CLUS_2                            5                             78
  CLUS_3                           30                             24
  CLUS_4                            0                              1
D5V2, multiclass
        clus
vv       AMP PEAK  5(8Q21.13) MUTATED AMP PEAK  5(8Q21.13) WILD-TYPE
  CLUS_1                           21                             32
  CLUS_2                            7                             43
  CLUS_3                           15                             53
D5V3, multiclass
        clus
vv       AMP PEAK  5(8Q21.13) MUTATED AMP PEAK  5(8Q21.13) WILD-TYPE
  CLUS_1                           19                             31
  CLUS_2                            7                             34
  CLUS_3                           11                             38
D5V4, multiclass
        clus
vv       AMP PEAK  5(8Q21.13) MUTATED AMP PEAK  5(8Q21.13) WILD-TYPE
  CLUS_1                           16                             25
  CLUS_2                           12                             31
  CLUS_3                            9                             47
D5V5, multiclass
        clus
vv       AMP PEAK  5(8Q21.13) MUTATED AMP PEAK  5(8Q21.13) WILD-TYPE
  CLUS_1                           15                             30
  CLUS_2                            8                             38
  CLUS_3                            6                             19
  CLUS_4                           14                             46
D5V6, multiclass
        clus
vv       AMP PEAK  5(8Q21.13) MUTATED AMP PEAK  5(8Q21.13) WILD-TYPE
  CLUS_1                            7                             23
  CLUS_2                           13                             56
  CLUS_3                           23                             54

Clustering(6) Variable = Amp Peak  6(10q21.2) mutation analysis
D6V1, multiclass
        clus
vv       AMP PEAK  6(10Q21.2) MUTATED AMP PEAK  6(10Q21.2) WILD-TYPE
  CLUS_1                            0                             39
  CLUS_2                            2                             81
  CLUS_3                            8                             46
  CLUS_4                            0                              1
D6V2, multiclass
        clus
vv       AMP PEAK  6(10Q21.2) MUTATED AMP PEAK  6(10Q21.2) WILD-TYPE
  CLUS_1                            4                             49
  CLUS_2                            1                             49
  CLUS_3                            4                             64
D6V3, multiclass
        clus
vv       AMP PEAK  6(10Q21.2) MUTATED AMP PEAK  6(10Q21.2) WILD-TYPE
  CLUS_1                            5                             45
  CLUS_2                            0                             41
  CLUS_3                            3                             46
D6V4, multiclass
        clus
vv       AMP PEAK  6(10Q21.2) MUTATED AMP PEAK  6(10Q21.2) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            2                             41
  CLUS_3                            1                             55
D6V5, multiclass
        clus
vv       AMP PEAK  6(10Q21.2) MUTATED AMP PEAK  6(10Q21.2) WILD-TYPE
  CLUS_1                            4                             41
  CLUS_2                            1                             45
  CLUS_3                            0                             25
  CLUS_4                            5                             55
D6V6, multiclass
        clus
vv       AMP PEAK  6(10Q21.2) MUTATED AMP PEAK  6(10Q21.2) WILD-TYPE
  CLUS_1                            1                             29
  CLUS_2                            4                             65
  CLUS_3                            5                             72

Clustering(7) Variable = Amp Peak  7(12q24.32) mutation analysis
D7V1, multiclass
        clus
vv       AMP PEAK  7(12Q24.32) MUTATED AMP PEAK  7(12Q24.32) WILD-TYPE
  CLUS_1                             0                              39
  CLUS_2                             0                              83
  CLUS_3                             7                              47
  CLUS_4                             0                               1
D7V2, multiclass
        clus
vv       AMP PEAK  7(12Q24.32) MUTATED AMP PEAK  7(12Q24.32) WILD-TYPE
  CLUS_1                             4                              49
  CLUS_2                             2                              48
  CLUS_3                             1                              67
D7V3, multiclass
        clus
vv       AMP PEAK  7(12Q24.32) MUTATED AMP PEAK  7(12Q24.32) WILD-TYPE
  CLUS_1                             3                              47
  CLUS_2                             2                              39
  CLUS_3                             1                              48
D7V4, multiclass
        clus
vv       AMP PEAK  7(12Q24.32) MUTATED AMP PEAK  7(12Q24.32) WILD-TYPE
  CLUS_1                             2                              39
  CLUS_2                             2                              41
  CLUS_3                             2                              54
D7V5, multiclass
        clus
vv       AMP PEAK  7(12Q24.32) MUTATED AMP PEAK  7(12Q24.32) WILD-TYPE
  CLUS_1                             3                              42
  CLUS_2                             2                              44
  CLUS_3                             0                              25
  CLUS_4                             1                              59
D7V6, multiclass
        clus
vv       AMP PEAK  7(12Q24.32) MUTATED AMP PEAK  7(12Q24.32) WILD-TYPE
  CLUS_1                             1                              29
  CLUS_2                             3                              66
  CLUS_3                             2                              75

Clustering(8) Variable = Amp Peak  8(14q21.1) mutation analysis
D8V1, multiclass
        clus
vv       AMP PEAK  8(14Q21.1) MUTATED AMP PEAK  8(14Q21.1) WILD-TYPE
  CLUS_1                            2                             37
  CLUS_2                            1                             82
  CLUS_3                            5                             49
  CLUS_4                            0                              1
D8V2, multiclass
        clus
vv       AMP PEAK  8(14Q21.1) MUTATED AMP PEAK  8(14Q21.1) WILD-TYPE
  CLUS_1                            4                             49
  CLUS_2                            2                             48
  CLUS_3                            2                             66
D8V3, multiclass
        clus
vv       AMP PEAK  8(14Q21.1) MUTATED AMP PEAK  8(14Q21.1) WILD-TYPE
  CLUS_1                            5                             45
  CLUS_2                            0                             41
  CLUS_3                            2                             47
D8V4, multiclass
        clus
vv       AMP PEAK  8(14Q21.1) MUTATED AMP PEAK  8(14Q21.1) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            1                             42
  CLUS_3                            2                             54
D8V5, multiclass
        clus
vv       AMP PEAK  8(14Q21.1) MUTATED AMP PEAK  8(14Q21.1) WILD-TYPE
  CLUS_1                            3                             42
  CLUS_2                            1                             45
  CLUS_3                            1                             24
  CLUS_4                            3                             57
D8V6, multiclass
        clus
vv       AMP PEAK  8(14Q21.1) MUTATED AMP PEAK  8(14Q21.1) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                            3                             66
  CLUS_3                            2                             75

Clustering(9) Variable = Amp Peak  9(Xp22.11) mutation analysis
D9V1, multiclass
        clus
vv       AMP PEAK  9(XP22.11) MUTATED AMP PEAK  9(XP22.11) WILD-TYPE
  CLUS_1                            1                             38
  CLUS_2                            1                             82
  CLUS_3                            3                             51
  CLUS_4                            0                              1
D9V2, multiclass
        clus
vv       AMP PEAK  9(XP22.11) MUTATED AMP PEAK  9(XP22.11) WILD-TYPE
  CLUS_1                            1                             52
  CLUS_2                            2                             48
  CLUS_3                            2                             66
D9V3, multiclass
        clus
vv       AMP PEAK  9(XP22.11) MUTATED AMP PEAK  9(XP22.11) WILD-TYPE
  CLUS_1                            2                             48
  CLUS_2                            2                             39
  CLUS_3                            1                             48
D9V4, multiclass
        clus
vv       AMP PEAK  9(XP22.11) MUTATED AMP PEAK  9(XP22.11) WILD-TYPE
  CLUS_1                            2                             39
  CLUS_2                            1                             42
  CLUS_3                            2                             54
D9V5, multiclass
        clus
vv       AMP PEAK  9(XP22.11) MUTATED AMP PEAK  9(XP22.11) WILD-TYPE
  CLUS_1                            1                             44
  CLUS_2                            0                             46
  CLUS_3                            0                             25
  CLUS_4                            4                             56
D9V6, multiclass
        clus
vv       AMP PEAK  9(XP22.11) MUTATED AMP PEAK  9(XP22.11) WILD-TYPE
  CLUS_1                            0                             30
  CLUS_2                            1                             68
  CLUS_3                            4                             73

Clustering(10) Variable = Amp Peak 10(Xp22.11) mutation analysis
D10V1, multiclass
        clus
vv       AMP PEAK 10(XP22.11) MUTATED AMP PEAK 10(XP22.11) WILD-TYPE
  CLUS_1                            0                             39
  CLUS_2                            3                             80
  CLUS_3                            2                             52
  CLUS_4                            0                              1
D10V2, multiclass
        clus
vv       AMP PEAK 10(XP22.11) MUTATED AMP PEAK 10(XP22.11) WILD-TYPE
  CLUS_1                            2                             51
  CLUS_2                            2                             48
  CLUS_3                            1                             67
D10V3, multiclass
        clus
vv       AMP PEAK 10(XP22.11) MUTATED AMP PEAK 10(XP22.11) WILD-TYPE
  CLUS_1                            2                             48
  CLUS_2                            0                             41
  CLUS_3                            2                             47
D10V4, multiclass
        clus
vv       AMP PEAK 10(XP22.11) MUTATED AMP PEAK 10(XP22.11) WILD-TYPE
  CLUS_1                            2                             39
  CLUS_2                            1                             42
  CLUS_3                            1                             55
D10V5, multiclass
        clus
vv       AMP PEAK 10(XP22.11) MUTATED AMP PEAK 10(XP22.11) WILD-TYPE
  CLUS_1                            1                             44
  CLUS_2                            2                             44
  CLUS_3                            1                             24
  CLUS_4                            1                             59
D10V6, multiclass
        clus
vv       AMP PEAK 10(XP22.11) MUTATED AMP PEAK 10(XP22.11) WILD-TYPE
  CLUS_1                            2                             28
  CLUS_2                            1                             68
  CLUS_3                            2                             75

Clustering(11) Variable = Amp Peak 11(Xp21.1) mutation analysis
D11V1, multiclass
        clus
vv       AMP PEAK 11(XP21.1) MUTATED AMP PEAK 11(XP21.1) WILD-TYPE
  CLUS_1                           0                            39
  CLUS_2                           2                            81
  CLUS_3                           2                            52
  CLUS_4                           0                             1
D11V2, multiclass
        clus
vv       AMP PEAK 11(XP21.1) MUTATED AMP PEAK 11(XP21.1) WILD-TYPE
  CLUS_1                           1                            52
  CLUS_2                           0                            50
  CLUS_3                           3                            65
D11V3, multiclass
        clus
vv       AMP PEAK 11(XP21.1) MUTATED AMP PEAK 11(XP21.1) WILD-TYPE
  CLUS_1                           1                            49
  CLUS_2                           1                            40
  CLUS_3                           2                            47
D11V4, multiclass
        clus
vv       AMP PEAK 11(XP21.1) MUTATED AMP PEAK 11(XP21.1) WILD-TYPE
  CLUS_1                           1                            40
  CLUS_2                           1                            42
  CLUS_3                           2                            54
D11V5, multiclass
        clus
vv       AMP PEAK 11(XP21.1) MUTATED AMP PEAK 11(XP21.1) WILD-TYPE
  CLUS_1                           2                            43
  CLUS_2                           2                            44
  CLUS_3                           0                            25
  CLUS_4                           0                            60
D11V6, multiclass
        clus
vv       AMP PEAK 11(XP21.1) MUTATED AMP PEAK 11(XP21.1) WILD-TYPE
  CLUS_1                           1                            29
  CLUS_2                           2                            67
  CLUS_3                           1                            76

Clustering(12) Variable = Amp Peak 12(Xq21.1) mutation analysis
D12V1, multiclass
        clus
vv       AMP PEAK 12(XQ21.1) MUTATED AMP PEAK 12(XQ21.1) WILD-TYPE
  CLUS_1                           1                            38
  CLUS_2                           2                            81
  CLUS_3                           4                            50
  CLUS_4                           0                             1
D12V2, multiclass
        clus
vv       AMP PEAK 12(XQ21.1) MUTATED AMP PEAK 12(XQ21.1) WILD-TYPE
  CLUS_1                           3                            50
  CLUS_2                           0                            50
  CLUS_3                           4                            64
D12V3, multiclass
        clus
vv       AMP PEAK 12(XQ21.1) MUTATED AMP PEAK 12(XQ21.1) WILD-TYPE
  CLUS_1                           2                            48
  CLUS_2                           0                            41
  CLUS_3                           4                            45
D12V4, multiclass
        clus
vv       AMP PEAK 12(XQ21.1) MUTATED AMP PEAK 12(XQ21.1) WILD-TYPE
  CLUS_1                           2                            39
  CLUS_2                           3                            40
  CLUS_3                           1                            55
D12V5, multiclass
        clus
vv       AMP PEAK 12(XQ21.1) MUTATED AMP PEAK 12(XQ21.1) WILD-TYPE
  CLUS_1                           3                            42
  CLUS_2                           3                            43
  CLUS_3                           0                            25
  CLUS_4                           1                            59
D12V6, multiclass
        clus
vv       AMP PEAK 12(XQ21.1) MUTATED AMP PEAK 12(XQ21.1) WILD-TYPE
  CLUS_1                           1                            29
  CLUS_2                           4                            65
  CLUS_3                           2                            75

Clustering(13) Variable = Amp Peak 13(Xq21.1) mutation analysis
D13V1, multiclass
        clus
vv       AMP PEAK 13(XQ21.1) MUTATED AMP PEAK 13(XQ21.1) WILD-TYPE
  CLUS_1                           2                            37
  CLUS_2                           0                            83
  CLUS_3                           3                            51
  CLUS_4                           0                             1
D13V2, multiclass
        clus
vv       AMP PEAK 13(XQ21.1) MUTATED AMP PEAK 13(XQ21.1) WILD-TYPE
  CLUS_1                           5                            48
  CLUS_2                           0                            50
  CLUS_3                           0                            68
D13V3, multiclass
        clus
vv       AMP PEAK 13(XQ21.1) MUTATED AMP PEAK 13(XQ21.1) WILD-TYPE
  CLUS_1                           2                            48
  CLUS_2                           1                            40
  CLUS_3                           0                            49
D13V4, multiclass
        clus
vv       AMP PEAK 13(XQ21.1) MUTATED AMP PEAK 13(XQ21.1) WILD-TYPE
  CLUS_1                           2                            39
  CLUS_2                           0                            43
  CLUS_3                           1                            55
D13V5, multiclass
        clus
vv       AMP PEAK 13(XQ21.1) MUTATED AMP PEAK 13(XQ21.1) WILD-TYPE
  CLUS_1                           2                            43
  CLUS_2                           1                            45
  CLUS_3                           0                            25
  CLUS_4                           2                            58
D13V6, multiclass
        clus
vv       AMP PEAK 13(XQ21.1) MUTATED AMP PEAK 13(XQ21.1) WILD-TYPE
  CLUS_1                           0                            30
  CLUS_2                           2                            67
  CLUS_3                           3                            74

Clustering(14) Variable = Amp Peak 14(Xq21.31) mutation analysis
D14V1, multiclass
        clus
vv       AMP PEAK 14(XQ21.31) MUTATED AMP PEAK 14(XQ21.31) WILD-TYPE
  CLUS_1                            0                             39
  CLUS_2                            1                             82
  CLUS_3                            4                             50
  CLUS_4                            0                              1
D14V2, multiclass
        clus
vv       AMP PEAK 14(XQ21.31) MUTATED AMP PEAK 14(XQ21.31) WILD-TYPE
  CLUS_1                            3                             50
  CLUS_2                            0                             50
  CLUS_3                            2                             66
D14V3, multiclass
        clus
vv       AMP PEAK 14(XQ21.31) MUTATED AMP PEAK 14(XQ21.31) WILD-TYPE
  CLUS_1                            2                             48
  CLUS_2                            0                             41
  CLUS_3                            2                             47
D14V4, multiclass
        clus
vv       AMP PEAK 14(XQ21.31) MUTATED AMP PEAK 14(XQ21.31) WILD-TYPE
  CLUS_1                            2                             39
  CLUS_2                            2                             41
  CLUS_3                            0                             56
D14V5, multiclass
        clus
vv       AMP PEAK 14(XQ21.31) MUTATED AMP PEAK 14(XQ21.31) WILD-TYPE
  CLUS_1                            2                             43
  CLUS_2                            1                             45
  CLUS_3                            1                             24
  CLUS_4                            1                             59
D14V6, multiclass
        clus
vv       AMP PEAK 14(XQ21.31) MUTATED AMP PEAK 14(XQ21.31) WILD-TYPE
  CLUS_1                            1                             29
  CLUS_2                            2                             67
  CLUS_3                            2                             75

Clustering(15) Variable = Amp Peak 15(Xq25) mutation analysis
D15V1, multiclass
        clus
vv       AMP PEAK 15(XQ25) MUTATED AMP PEAK 15(XQ25) WILD-TYPE
  CLUS_1                         0                          39
  CLUS_2                         0                          83
  CLUS_3                         4                          50
  CLUS_4                         0                           1
D15V2, multiclass
        clus
vv       AMP PEAK 15(XQ25) MUTATED AMP PEAK 15(XQ25) WILD-TYPE
  CLUS_1                         2                          51
  CLUS_2                         2                          48
  CLUS_3                         0                          68
D15V3, multiclass
        clus
vv       AMP PEAK 15(XQ25) MUTATED AMP PEAK 15(XQ25) WILD-TYPE
  CLUS_1                         1                          49
  CLUS_2                         2                          39
  CLUS_3                         0                          49
D15V4, multiclass
        clus
vv       AMP PEAK 15(XQ25) MUTATED AMP PEAK 15(XQ25) WILD-TYPE
  CLUS_1                         1                          40
  CLUS_2                         0                          43
  CLUS_3                         2                          54
D15V5, multiclass
        clus
vv       AMP PEAK 15(XQ25) MUTATED AMP PEAK 15(XQ25) WILD-TYPE
  CLUS_1                         1                          44
  CLUS_2                         0                          46
  CLUS_3                         0                          25
  CLUS_4                         3                          57
D15V6, multiclass
        clus
vv       AMP PEAK 15(XQ25) MUTATED AMP PEAK 15(XQ25) WILD-TYPE
  CLUS_1                         0                          30
  CLUS_2                         0                          69
  CLUS_3                         4                          73

Clustering(16) Variable = Amp Peak 16(Xq25) mutation analysis
D16V1, multiclass
        clus
vv       AMP PEAK 16(XQ25) MUTATED AMP PEAK 16(XQ25) WILD-TYPE
  CLUS_1                         1                          38
  CLUS_2                         3                          80
  CLUS_3                         2                          52
  CLUS_4                         0                           1
D16V2, multiclass
        clus
vv       AMP PEAK 16(XQ25) MUTATED AMP PEAK 16(XQ25) WILD-TYPE
  CLUS_1                         3                          50
  CLUS_2                         0                          50
  CLUS_3                         3                          65
D16V3, multiclass
        clus
vv       AMP PEAK 16(XQ25) MUTATED AMP PEAK 16(XQ25) WILD-TYPE
  CLUS_1                         2                          48
  CLUS_2                         3                          38
  CLUS_3                         0                          49
D16V4, multiclass
        clus
vv       AMP PEAK 16(XQ25) MUTATED AMP PEAK 16(XQ25) WILD-TYPE
  CLUS_1                         2                          39
  CLUS_2                         0                          43
  CLUS_3                         3                          53
D16V5, multiclass
        clus
vv       AMP PEAK 16(XQ25) MUTATED AMP PEAK 16(XQ25) WILD-TYPE
  CLUS_1                         1                          44
  CLUS_2                         4                          42
  CLUS_3                         0                          25
  CLUS_4                         1                          59
D16V6, multiclass
        clus
vv       AMP PEAK 16(XQ25) MUTATED AMP PEAK 16(XQ25) WILD-TYPE
  CLUS_1                         0                          30
  CLUS_2                         4                          65
  CLUS_3                         2                          75

Clustering(17) Variable = Amp Peak 17(Xq27.1) mutation analysis
D17V1, multiclass
        clus
vv       AMP PEAK 17(XQ27.1) MUTATED AMP PEAK 17(XQ27.1) WILD-TYPE
  CLUS_1                           4                            35
  CLUS_2                           1                            82
  CLUS_3                           3                            51
  CLUS_4                           1                             0
D17V2, multiclass
        clus
vv       AMP PEAK 17(XQ27.1) MUTATED AMP PEAK 17(XQ27.1) WILD-TYPE
  CLUS_1                           4                            49
  CLUS_2                           1                            49
  CLUS_3                           4                            64
D17V3, multiclass
        clus
vv       AMP PEAK 17(XQ27.1) MUTATED AMP PEAK 17(XQ27.1) WILD-TYPE
  CLUS_1                           3                            47
  CLUS_2                           2                            39
  CLUS_3                           3                            46
D17V4, multiclass
        clus
vv       AMP PEAK 17(XQ27.1) MUTATED AMP PEAK 17(XQ27.1) WILD-TYPE
  CLUS_1                           3                            38
  CLUS_2                           2                            41
  CLUS_3                           3                            53
D17V5, multiclass
        clus
vv       AMP PEAK 17(XQ27.1) MUTATED AMP PEAK 17(XQ27.1) WILD-TYPE
  CLUS_1                           1                            44
  CLUS_2                           0                            46
  CLUS_3                           2                            23
  CLUS_4                           6                            54
D17V6, multiclass
        clus
vv       AMP PEAK 17(XQ27.1) MUTATED AMP PEAK 17(XQ27.1) WILD-TYPE
  CLUS_1                           2                            28
  CLUS_2                           0                            69
  CLUS_3                           7                            70

Clustering(18) Variable = Del Peak  1(1p31.3) mutation analysis
D18V1, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           2                            37
  CLUS_2                           7                            76
  CLUS_3                          12                            42
  CLUS_4                           0                             1
D18V2, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           4                            49
  CLUS_2                           1                            49
  CLUS_3                          15                            53
D18V3, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           4                            46
  CLUS_2                           1                            40
  CLUS_3                          10                            39
D18V4, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                          10                            33
  CLUS_3                           1                            55
D18V5, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           7                            38
  CLUS_2                           2                            44
  CLUS_3                           2                            23
  CLUS_4                          10                            50
D18V6, multiclass
        clus
vv       DEL PEAK  1(1P31.3) MUTATED DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                           1                            29
  CLUS_2                           7                            62
  CLUS_3                          13                            64

Clustering(19) Variable = Del Peak  2(1p21.3) mutation analysis
D19V1, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           5                            34
  CLUS_2                           2                            81
  CLUS_3                          10                            44
  CLUS_4                           0                             1
D19V2, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           5                            48
  CLUS_2                           3                            47
  CLUS_3                           7                            61
D19V3, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           4                            46
  CLUS_2                           3                            38
  CLUS_3                           5                            44
D19V4, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           5                            38
  CLUS_3                           3                            53
D19V5, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           6                            39
  CLUS_2                           1                            45
  CLUS_3                           1                            24
  CLUS_4                           9                            51
D19V6, multiclass
        clus
vv       DEL PEAK  2(1P21.3) MUTATED DEL PEAK  2(1P21.3) WILD-TYPE
  CLUS_1                           2                            28
  CLUS_2                           7                            62
  CLUS_3                           8                            69

Clustering(20) Variable = Del Peak  3(1q23.1) mutation analysis
D20V1, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           2                            37
  CLUS_2                           3                            80
  CLUS_3                           2                            52
  CLUS_4                           1                             0
D20V2, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           4                            49
  CLUS_2                           0                            50
  CLUS_3                           4                            64
D20V3, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           2                            48
  CLUS_2                           0                            41
  CLUS_3                           4                            45
D20V4, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           2                            39
  CLUS_2                           4                            39
  CLUS_3                           0                            56
D20V5, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           2                            43
  CLUS_2                           0                            46
  CLUS_3                           0                            25
  CLUS_4                           6                            54
D20V6, multiclass
        clus
vv       DEL PEAK  3(1Q23.1) MUTATED DEL PEAK  3(1Q23.1) WILD-TYPE
  CLUS_1                           1                            29
  CLUS_2                           2                            67
  CLUS_3                           5                            72

Clustering(21) Variable = Del Peak  4(1q42.13) mutation analysis
D21V1, multiclass
        clus
vv       DEL PEAK  4(1Q42.13) MUTATED DEL PEAK  4(1Q42.13) WILD-TYPE
  CLUS_1                            7                             32
  CLUS_2                            4                             79
  CLUS_3                            6                             48
  CLUS_4                            0                              1
D21V2, multiclass
        clus
vv       DEL PEAK  4(1Q42.13) MUTATED DEL PEAK  4(1Q42.13) WILD-TYPE
  CLUS_1                           10                             43
  CLUS_2                            1                             49
  CLUS_3                            5                             63
D21V3, multiclass
        clus
vv       DEL PEAK  4(1Q42.13) MUTATED DEL PEAK  4(1Q42.13) WILD-TYPE
  CLUS_1                            5                             45
  CLUS_2                            3                             38
  CLUS_3                            5                             44
D21V4, multiclass
        clus
vv       DEL PEAK  4(1Q42.13) MUTATED DEL PEAK  4(1Q42.13) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            3                             40
  CLUS_3                            5                             51
D21V5, multiclass
        clus
vv       DEL PEAK  4(1Q42.13) MUTATED DEL PEAK  4(1Q42.13) WILD-TYPE
  CLUS_1                            5                             40
  CLUS_2                            4                             42
  CLUS_3                            0                             25
  CLUS_4                            8                             52
D21V6, multiclass
        clus
vv       DEL PEAK  4(1Q42.13) MUTATED DEL PEAK  4(1Q42.13) WILD-TYPE
  CLUS_1                            2                             28
  CLUS_2                            6                             63
  CLUS_3                            9                             68

Clustering(22) Variable = Del Peak  5(2q22.1) mutation analysis
D22V1, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           9                            30
  CLUS_2                           2                            81
  CLUS_3                           9                            45
  CLUS_4                           1                             0
D22V2, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          12                            41
  CLUS_2                           1                            49
  CLUS_3                           8                            60
D22V3, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           7                            43
  CLUS_2                           3                            38
  CLUS_3                           7                            42
D22V4, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           7                            34
  CLUS_2                           6                            37
  CLUS_3                           4                            52
D22V5, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           7                            38
  CLUS_2                           2                            44
  CLUS_3                           0                            25
  CLUS_4                          12                            48
D22V6, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           1                            29
  CLUS_2                           4                            65
  CLUS_3                          16                            61

Clustering(23) Variable = Del Peak  6(2q22.3) mutation analysis
D23V1, multiclass
        clus
vv       DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE
  CLUS_1                           8                            31
  CLUS_2                           2                            81
  CLUS_3                          12                            42
  CLUS_4                           1                             0
D23V2, multiclass
        clus
vv       DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE
  CLUS_1                          11                            42
  CLUS_2                           2                            48
  CLUS_3                           9                            59
D23V3, multiclass
        clus
vv       DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE
  CLUS_1                           9                            41
  CLUS_2                           1                            40
  CLUS_3                           8                            41
D23V4, multiclass
        clus
vv       DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE
  CLUS_1                           9                            32
  CLUS_2                           7                            36
  CLUS_3                           2                            54
D23V5, multiclass
        clus
vv       DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE
  CLUS_1                           7                            38
  CLUS_2                           2                            44
  CLUS_3                           0                            25
  CLUS_4                          14                            46
D23V6, multiclass
        clus
vv       DEL PEAK  6(2Q22.3) MUTATED DEL PEAK  6(2Q22.3) WILD-TYPE
  CLUS_1                           3                            27
  CLUS_2                           5                            64
  CLUS_3                          15                            62

Clustering(24) Variable = Del Peak  7(3p13) mutation analysis
D24V1, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                         3                          36
  CLUS_2                        15                          68
  CLUS_3                        10                          44
  CLUS_4                         0                           1
D24V2, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                         4                          49
  CLUS_2                         8                          42
  CLUS_3                        15                          53
D24V3, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                         6                          44
  CLUS_2                         8                          33
  CLUS_3                        10                          39
D24V4, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                         6                          35
  CLUS_2                         8                          35
  CLUS_3                        10                          46
D24V5, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                        10                          35
  CLUS_2                         8                          38
  CLUS_3                         5                          20
  CLUS_4                         5                          55
D24V6, multiclass
        clus
vv       DEL PEAK  7(3P13) MUTATED DEL PEAK  7(3P13) WILD-TYPE
  CLUS_1                         4                          26
  CLUS_2                        16                          53
  CLUS_3                         8                          69

Clustering(25) Variable = Del Peak  8(3q29) mutation analysis
D25V1, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         1                          38
  CLUS_2                         8                          75
  CLUS_3                         3                          51
  CLUS_4                         0                           1
D25V2, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         2                          51
  CLUS_2                         2                          48
  CLUS_3                         8                          60
D25V3, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         3                          47
  CLUS_2                         1                          40
  CLUS_3                         7                          42
D25V4, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         3                          38
  CLUS_2                         6                          37
  CLUS_3                         2                          54
D25V5, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         2                          43
  CLUS_2                         2                          44
  CLUS_3                         3                          22
  CLUS_4                         5                          55
D25V6, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         2                          28
  CLUS_2                         5                          64
  CLUS_3                         5                          72

Clustering(26) Variable = Del Peak  9(4q28.1) mutation analysis
D26V1, multiclass
        clus
vv       DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE
  CLUS_1                           5                            34
  CLUS_2                           1                            82
  CLUS_3                           6                            48
  CLUS_4                           0                             1
D26V2, multiclass
        clus
vv       DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE
  CLUS_1                           9                            44
  CLUS_2                           0                            50
  CLUS_3                           3                            65
D26V3, multiclass
        clus
vv       DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE
  CLUS_1                           6                            44
  CLUS_2                           1                            40
  CLUS_3                           2                            47
D26V4, multiclass
        clus
vv       DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE
  CLUS_1                           4                            37
  CLUS_2                           2                            41
  CLUS_3                           3                            53
D26V5, multiclass
        clus
vv       DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE
  CLUS_1                           1                            44
  CLUS_2                           2                            44
  CLUS_3                           1                            24
  CLUS_4                           7                            53
D26V6, multiclass
        clus
vv       DEL PEAK  9(4Q28.1) MUTATED DEL PEAK  9(4Q28.1) WILD-TYPE
  CLUS_1                           1                            29
  CLUS_2                           2                            67
  CLUS_3                           8                            69

Clustering(27) Variable = Del Peak 10(5q11.2) mutation analysis
D27V1, multiclass
        clus
vv       DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  CLUS_1                          12                            27
  CLUS_2                           2                            81
  CLUS_3                          15                            39
  CLUS_4                           0                             1
D27V2, multiclass
        clus
vv       DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  CLUS_1                          13                            40
  CLUS_2                           3                            47
  CLUS_3                           9                            59
D27V3, multiclass
        clus
vv       DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  CLUS_1                           9                            41
  CLUS_2                           5                            36
  CLUS_3                           7                            42
D27V4, multiclass
        clus
vv       DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                           7                            36
  CLUS_3                           8                            48
D27V5, multiclass
        clus
vv       DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  CLUS_1                          10                            35
  CLUS_2                           6                            40
  CLUS_3                           4                            21
  CLUS_4                           8                            52
D27V6, multiclass
        clus
vv       DEL PEAK 10(5Q11.2) MUTATED DEL PEAK 10(5Q11.2) WILD-TYPE
  CLUS_1                           3                            27
  CLUS_2                          12                            57
  CLUS_3                          13                            64

Clustering(28) Variable = Del Peak 11(5q21.1) mutation analysis
D28V1, multiclass
        clus
vv       DEL PEAK 11(5Q21.1) MUTATED DEL PEAK 11(5Q21.1) WILD-TYPE
  CLUS_1                          16                            23
  CLUS_2                           0                            83
  CLUS_3                          15                            39
  CLUS_4                           0                             1
D28V2, multiclass
        clus
vv       DEL PEAK 11(5Q21.1) MUTATED DEL PEAK 11(5Q21.1) WILD-TYPE
  CLUS_1                          20                            33
  CLUS_2                           3                            47
  CLUS_3                           5                            63
D28V3, multiclass
        clus
vv       DEL PEAK 11(5Q21.1) MUTATED DEL PEAK 11(5Q21.1) WILD-TYPE
  CLUS_1                          12                            38
  CLUS_2                           5                            36
  CLUS_3                           5                            44
D28V4, multiclass
        clus
vv       DEL PEAK 11(5Q21.1) MUTATED DEL PEAK 11(5Q21.1) WILD-TYPE
  CLUS_1                           9                            32
  CLUS_2                           6                            37
  CLUS_3                           7                            49
D28V5, multiclass
        clus
vv       DEL PEAK 11(5Q21.1) MUTATED DEL PEAK 11(5Q21.1) WILD-TYPE
  CLUS_1                          12                            33
  CLUS_2                           6                            40
  CLUS_3                           3                            22
  CLUS_4                           9                            51
D28V6, multiclass
        clus
vv       DEL PEAK 11(5Q21.1) MUTATED DEL PEAK 11(5Q21.1) WILD-TYPE
  CLUS_1                           3                            27
  CLUS_2                          12                            57
  CLUS_3                          15                            62

Clustering(29) Variable = Del Peak 12(6q15) mutation analysis
D29V1, multiclass
        clus
vv       DEL PEAK 12(6Q15) MUTATED DEL PEAK 12(6Q15) WILD-TYPE
  CLUS_1                        29                          10
  CLUS_2                         4                          79
  CLUS_3                        22                          32
  CLUS_4                         1                           0
D29V2, multiclass
        clus
vv       DEL PEAK 12(6Q15) MUTATED DEL PEAK 12(6Q15) WILD-TYPE
  CLUS_1                        32                          21
  CLUS_2                         2                          48
  CLUS_3                        19                          49
D29V3, multiclass
        clus
vv       DEL PEAK 12(6Q15) MUTATED DEL PEAK 12(6Q15) WILD-TYPE
  CLUS_1                        24                          26
  CLUS_2                         5                          36
  CLUS_3                        14                          35
D29V4, multiclass
        clus
vv       DEL PEAK 12(6Q15) MUTATED DEL PEAK 12(6Q15) WILD-TYPE
  CLUS_1                        21                          20
  CLUS_2                        12                          31
  CLUS_3                        10                          46
D29V5, multiclass
        clus
vv       DEL PEAK 12(6Q15) MUTATED DEL PEAK 12(6Q15) WILD-TYPE
  CLUS_1                        23                          22
  CLUS_2                         5                          41
  CLUS_3                         6                          19
  CLUS_4                        21                          39
D29V6, multiclass
        clus
vv       DEL PEAK 12(6Q15) MUTATED DEL PEAK 12(6Q15) WILD-TYPE
  CLUS_1                         9                          21
  CLUS_2                        20                          49
  CLUS_3                        26                          51

Clustering(30) Variable = Del Peak 13(7q36.1) mutation analysis
D30V1, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           1                            38
  CLUS_2                           3                            80
  CLUS_3                           4                            50
  CLUS_4                           0                             1
D30V2, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           1                            52
  CLUS_2                           2                            48
  CLUS_3                           5                            63
D30V3, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           3                            47
  CLUS_2                           1                            40
  CLUS_3                           4                            45
D30V4, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           3                            38
  CLUS_2                           3                            40
  CLUS_3                           2                            54
D30V5, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           2                            43
  CLUS_2                           2                            44
  CLUS_3                           0                            25
  CLUS_4                           4                            56
D30V6, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                           0                            30
  CLUS_2                           4                            65
  CLUS_3                           4                            73

Clustering(31) Variable = Del Peak 14(8p21.3) mutation analysis
D31V1, multiclass
        clus
vv       DEL PEAK 14(8P21.3) MUTATED DEL PEAK 14(8P21.3) WILD-TYPE
  CLUS_1                          18                            21
  CLUS_2                          38                            45
  CLUS_3                          49                             5
  CLUS_4                           1                             0
D31V2, multiclass
        clus
vv       DEL PEAK 14(8P21.3) MUTATED DEL PEAK 14(8P21.3) WILD-TYPE
  CLUS_1                          29                            24
  CLUS_2                          19                            31
  CLUS_3                          53                            15
D31V3, multiclass
        clus
vv       DEL PEAK 14(8P21.3) MUTATED DEL PEAK 14(8P21.3) WILD-TYPE
  CLUS_1                          26                            24
  CLUS_2                          24                            17
  CLUS_3                          37                            12
D31V4, multiclass
        clus
vv       DEL PEAK 14(8P21.3) MUTATED DEL PEAK 14(8P21.3) WILD-TYPE
  CLUS_1                          23                            18
  CLUS_2                          33                            10
  CLUS_3                          31                            25
D31V5, multiclass
        clus
vv       DEL PEAK 14(8P21.3) MUTATED DEL PEAK 14(8P21.3) WILD-TYPE
  CLUS_1                          36                             9
  CLUS_2                          24                            22
  CLUS_3                           9                            16
  CLUS_4                          36                            24
D31V6, multiclass
        clus
vv       DEL PEAK 14(8P21.3) MUTATED DEL PEAK 14(8P21.3) WILD-TYPE
  CLUS_1                          12                            18
  CLUS_2                          45                            24
  CLUS_3                          48                            29

Clustering(32) Variable = Del Peak 15(8p11.21) mutation analysis
D32V1, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                            9                             30
  CLUS_2                           23                             60
  CLUS_3                           27                             27
  CLUS_4                            0                              1
D32V2, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           17                             36
  CLUS_2                            6                             44
  CLUS_3                           32                             36
D32V3, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           13                             37
  CLUS_2                           10                             31
  CLUS_3                           22                             27
D32V4, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           11                             30
  CLUS_2                           21                             22
  CLUS_3                           13                             43
D32V5, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           20                             25
  CLUS_2                           13                             33
  CLUS_3                            6                             19
  CLUS_4                           20                             40
D32V6, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           24                             45
  CLUS_3                           29                             48

Clustering(33) Variable = Del Peak 16(10q23.31) mutation analysis
D33V1, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                             6                              33
  CLUS_2                            21                              62
  CLUS_3                            35                              19
  CLUS_4                             1                               0
D33V2, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            13                              40
  CLUS_2                            10                              40
  CLUS_3                            39                              29
D33V3, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            12                              38
  CLUS_2                            11                              30
  CLUS_3                            31                              18
D33V4, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            12                              29
  CLUS_2                            24                              19
  CLUS_3                            18                              38
D33V5, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                            22                              23
  CLUS_2                            14                              32
  CLUS_3                             4                              21
  CLUS_4                            22                              38
D33V6, multiclass
        clus
vv       DEL PEAK 16(10Q23.31) MUTATED DEL PEAK 16(10Q23.31) WILD-TYPE
  CLUS_1                             5                              25
  CLUS_2                            25                              44
  CLUS_3                            32                              45

Clustering(34) Variable = Del Peak 17(11q23.2) mutation analysis
D34V1, multiclass
        clus
vv       DEL PEAK 17(11Q23.2) MUTATED DEL PEAK 17(11Q23.2) WILD-TYPE
  CLUS_1                            5                             34
  CLUS_2                            5                             78
  CLUS_3                           10                             44
  CLUS_4                            0                              1
D34V2, multiclass
        clus
vv       DEL PEAK 17(11Q23.2) MUTATED DEL PEAK 17(11Q23.2) WILD-TYPE
  CLUS_1                            9                             44
  CLUS_2                            3                             47
  CLUS_3                            8                             60
D34V3, multiclass
        clus
vv       DEL PEAK 17(11Q23.2) MUTATED DEL PEAK 17(11Q23.2) WILD-TYPE
  CLUS_1                            5                             45
  CLUS_2                            6                             35
  CLUS_3                            5                             44
D34V4, multiclass
        clus
vv       DEL PEAK 17(11Q23.2) MUTATED DEL PEAK 17(11Q23.2) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            4                             39
  CLUS_3                            8                             48
D34V5, multiclass
        clus
vv       DEL PEAK 17(11Q23.2) MUTATED DEL PEAK 17(11Q23.2) WILD-TYPE
  CLUS_1                            8                             37
  CLUS_2                            3                             43
  CLUS_3                            2                             23
  CLUS_4                            7                             53
D34V6, multiclass
        clus
vv       DEL PEAK 17(11Q23.2) MUTATED DEL PEAK 17(11Q23.2) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                            6                             63
  CLUS_3                           11                             66

Clustering(35) Variable = Del Peak 18(12p13.2) mutation analysis
D35V1, multiclass
        clus
vv       DEL PEAK 18(12P13.2) MUTATED DEL PEAK 18(12P13.2) WILD-TYPE
  CLUS_1                            6                             33
  CLUS_2                           10                             73
  CLUS_3                           22                             32
  CLUS_4                            0                              1
D35V2, multiclass
        clus
vv       DEL PEAK 18(12P13.2) MUTATED DEL PEAK 18(12P13.2) WILD-TYPE
  CLUS_1                           14                             39
  CLUS_2                            4                             46
  CLUS_3                           16                             52
D35V3, multiclass
        clus
vv       DEL PEAK 18(12P13.2) MUTATED DEL PEAK 18(12P13.2) WILD-TYPE
  CLUS_1                            9                             41
  CLUS_2                            8                             33
  CLUS_3                           12                             37
D35V4, multiclass
        clus
vv       DEL PEAK 18(12P13.2) MUTATED DEL PEAK 18(12P13.2) WILD-TYPE
  CLUS_1                            8                             33
  CLUS_2                           11                             32
  CLUS_3                           10                             46
D35V5, multiclass
        clus
vv       DEL PEAK 18(12P13.2) MUTATED DEL PEAK 18(12P13.2) WILD-TYPE
  CLUS_1                           16                             29
  CLUS_2                            6                             40
  CLUS_3                            5                             20
  CLUS_4                           10                             50
D35V6, multiclass
        clus
vv       DEL PEAK 18(12P13.2) MUTATED DEL PEAK 18(12P13.2) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                           15                             54
  CLUS_3                           17                             60

Clustering(36) Variable = Del Peak 19(13q14.13) mutation analysis
D36V1, multiclass
        clus
vv       DEL PEAK 19(13Q14.13) MUTATED DEL PEAK 19(13Q14.13) WILD-TYPE
  CLUS_1                            25                              14
  CLUS_2                            24                              59
  CLUS_3                            31                              23
  CLUS_4                             1                               0
D36V2, multiclass
        clus
vv       DEL PEAK 19(13Q14.13) MUTATED DEL PEAK 19(13Q14.13) WILD-TYPE
  CLUS_1                            29                              24
  CLUS_2                            13                              37
  CLUS_3                            35                              33
D36V3, multiclass
        clus
vv       DEL PEAK 19(13Q14.13) MUTATED DEL PEAK 19(13Q14.13) WILD-TYPE
  CLUS_1                            25                              25
  CLUS_2                            14                              27
  CLUS_3                            31                              18
D36V4, multiclass
        clus
vv       DEL PEAK 19(13Q14.13) MUTATED DEL PEAK 19(13Q14.13) WILD-TYPE
  CLUS_1                            24                              17
  CLUS_2                            26                              17
  CLUS_3                            20                              36
D36V5, multiclass
        clus
vv       DEL PEAK 19(13Q14.13) MUTATED DEL PEAK 19(13Q14.13) WILD-TYPE
  CLUS_1                            25                              20
  CLUS_2                            17                              29
  CLUS_3                            10                              15
  CLUS_4                            29                              31
D36V6, multiclass
        clus
vv       DEL PEAK 19(13Q14.13) MUTATED DEL PEAK 19(13Q14.13) WILD-TYPE
  CLUS_1                            13                              17
  CLUS_2                            28                              41
  CLUS_3                            40                              37

Clustering(37) Variable = Del Peak 20(16q22.3) mutation analysis
D37V1, multiclass
        clus
vv       DEL PEAK 20(16Q22.3) MUTATED DEL PEAK 20(16Q22.3) WILD-TYPE
  CLUS_1                            6                             33
  CLUS_2                           18                             65
  CLUS_3                           33                             21
  CLUS_4                            0                              1
D37V2, multiclass
        clus
vv       DEL PEAK 20(16Q22.3) MUTATED DEL PEAK 20(16Q22.3) WILD-TYPE
  CLUS_1                           14                             39
  CLUS_2                           10                             40
  CLUS_3                           30                             38
D37V3, multiclass
        clus
vv       DEL PEAK 20(16Q22.3) MUTATED DEL PEAK 20(16Q22.3) WILD-TYPE
  CLUS_1                           11                             39
  CLUS_2                           12                             29
  CLUS_3                           24                             25
D37V4, multiclass
        clus
vv       DEL PEAK 20(16Q22.3) MUTATED DEL PEAK 20(16Q22.3) WILD-TYPE
  CLUS_1                           10                             31
  CLUS_2                           19                             24
  CLUS_3                           18                             38
D37V5, multiclass
        clus
vv       DEL PEAK 20(16Q22.3) MUTATED DEL PEAK 20(16Q22.3) WILD-TYPE
  CLUS_1                           16                             29
  CLUS_2                           11                             35
  CLUS_3                            3                             22
  CLUS_4                           26                             34
D37V6, multiclass
        clus
vv       DEL PEAK 20(16Q22.3) MUTATED DEL PEAK 20(16Q22.3) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                           21                             48
  CLUS_3                           30                             47

Clustering(38) Variable = Del Peak 21(16q24.1) mutation analysis
D38V1, multiclass
        clus
vv       DEL PEAK 21(16Q24.1) MUTATED DEL PEAK 21(16Q24.1) WILD-TYPE
  CLUS_1                            8                             31
  CLUS_2                           22                             61
  CLUS_3                           42                             12
  CLUS_4                            0                              1
D38V2, multiclass
        clus
vv       DEL PEAK 21(16Q24.1) MUTATED DEL PEAK 21(16Q24.1) WILD-TYPE
  CLUS_1                           18                             35
  CLUS_2                           14                             36
  CLUS_3                           37                             31
D38V3, multiclass
        clus
vv       DEL PEAK 21(16Q24.1) MUTATED DEL PEAK 21(16Q24.1) WILD-TYPE
  CLUS_1                           15                             35
  CLUS_2                           19                             22
  CLUS_3                           26                             23
D38V4, multiclass
        clus
vv       DEL PEAK 21(16Q24.1) MUTATED DEL PEAK 21(16Q24.1) WILD-TYPE
  CLUS_1                           14                             27
  CLUS_2                           19                             24
  CLUS_3                           27                             29
D38V5, multiclass
        clus
vv       DEL PEAK 21(16Q24.1) MUTATED DEL PEAK 21(16Q24.1) WILD-TYPE
  CLUS_1                           21                             24
  CLUS_2                           18                             28
  CLUS_3                            4                             21
  CLUS_4                           28                             32
D38V6, multiclass
        clus
vv       DEL PEAK 21(16Q24.1) MUTATED DEL PEAK 21(16Q24.1) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           29                             40
  CLUS_3                           36                             41

Clustering(39) Variable = Del Peak 22(17p13.1) mutation analysis
D39V1, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                           11                             72
  CLUS_3                           30                             24
  CLUS_4                            1                              0
D39V2, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                           11                             42
  CLUS_2                           11                             39
  CLUS_3                           23                             45
D39V3, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                           10                             40
  CLUS_2                           11                             30
  CLUS_3                           20                             29
D39V4, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            7                             34
  CLUS_2                           21                             22
  CLUS_3                           13                             43
D39V5, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                           14                             31
  CLUS_2                           10                             36
  CLUS_3                            3                             22
  CLUS_4                           17                             43
D39V6, multiclass
        clus
vv       DEL PEAK 22(17P13.1) MUTATED DEL PEAK 22(17P13.1) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                           22                             47
  CLUS_3                           19                             58

Clustering(40) Variable = Del Peak 23(17q21.31) mutation analysis
D40V1, multiclass
        clus
vv       DEL PEAK 23(17Q21.31) MUTATED DEL PEAK 23(17Q21.31) WILD-TYPE
  CLUS_1                             2                              37
  CLUS_2                            14                              69
  CLUS_3                            17                              37
  CLUS_4                             1                               0
D40V2, multiclass
        clus
vv       DEL PEAK 23(17Q21.31) MUTATED DEL PEAK 23(17Q21.31) WILD-TYPE
  CLUS_1                             4                              49
  CLUS_2                             5                              45
  CLUS_3                            23                              45
D40V3, multiclass
        clus
vv       DEL PEAK 23(17Q21.31) MUTATED DEL PEAK 23(17Q21.31) WILD-TYPE
  CLUS_1                             6                              44
  CLUS_2                             4                              37
  CLUS_3                            17                              32
D40V4, multiclass
        clus
vv       DEL PEAK 23(17Q21.31) MUTATED DEL PEAK 23(17Q21.31) WILD-TYPE
  CLUS_1                             3                              38
  CLUS_2                            15                              28
  CLUS_3                             9                              47
D40V5, multiclass
        clus
vv       DEL PEAK 23(17Q21.31) MUTATED DEL PEAK 23(17Q21.31) WILD-TYPE
  CLUS_1                             9                              36
  CLUS_2                             9                              37
  CLUS_3                             2                              23
  CLUS_4                            13                              47
D40V6, multiclass
        clus
vv       DEL PEAK 23(17Q21.31) MUTATED DEL PEAK 23(17Q21.31) WILD-TYPE
  CLUS_1                             3                              27
  CLUS_2                            12                              57
  CLUS_3                            18                              59

Clustering(41) Variable = Del Peak 24(18q22.1) mutation analysis
D41V1, multiclass
        clus
vv       DEL PEAK 24(18Q22.1) MUTATED DEL PEAK 24(18Q22.1) WILD-TYPE
  CLUS_1                            3                             36
  CLUS_2                            9                             74
  CLUS_3                           32                             22
  CLUS_4                            0                              1
D41V2, multiclass
        clus
vv       DEL PEAK 24(18Q22.1) MUTATED DEL PEAK 24(18Q22.1) WILD-TYPE
  CLUS_1                           15                             38
  CLUS_2                           10                             40
  CLUS_3                           17                             51
D41V3, multiclass
        clus
vv       DEL PEAK 24(18Q22.1) MUTATED DEL PEAK 24(18Q22.1) WILD-TYPE
  CLUS_1                           14                             36
  CLUS_2                            8                             33
  CLUS_3                           13                             36
D41V4, multiclass
        clus
vv       DEL PEAK 24(18Q22.1) MUTATED DEL PEAK 24(18Q22.1) WILD-TYPE
  CLUS_1                           14                             27
  CLUS_2                           12                             31
  CLUS_3                            9                             47
D41V5, multiclass
        clus
vv       DEL PEAK 24(18Q22.1) MUTATED DEL PEAK 24(18Q22.1) WILD-TYPE
  CLUS_1                           15                             30
  CLUS_2                            5                             41
  CLUS_3                            7                             18
  CLUS_4                           17                             43
D41V6, multiclass
        clus
vv       DEL PEAK 24(18Q22.1) MUTATED DEL PEAK 24(18Q22.1) WILD-TYPE
  CLUS_1                            8                             22
  CLUS_2                           12                             57
  CLUS_3                           24                             53

Clustering(42) Variable = Del Peak 25(18q23) mutation analysis
D42V1, multiclass
        clus
vv       DEL PEAK 25(18Q23) MUTATED DEL PEAK 25(18Q23) WILD-TYPE
  CLUS_1                          4                           35
  CLUS_2                          9                           74
  CLUS_3                         37                           17
  CLUS_4                          0                            1
D42V2, multiclass
        clus
vv       DEL PEAK 25(18Q23) MUTATED DEL PEAK 25(18Q23) WILD-TYPE
  CLUS_1                         16                           37
  CLUS_2                         11                           39
  CLUS_3                         21                           47
D42V3, multiclass
        clus
vv       DEL PEAK 25(18Q23) MUTATED DEL PEAK 25(18Q23) WILD-TYPE
  CLUS_1                         14                           36
  CLUS_2                          9                           32
  CLUS_3                         17                           32
D42V4, multiclass
        clus
vv       DEL PEAK 25(18Q23) MUTATED DEL PEAK 25(18Q23) WILD-TYPE
  CLUS_1                         13                           28
  CLUS_2                         16                           27
  CLUS_3                         11                           45
D42V5, multiclass
        clus
vv       DEL PEAK 25(18Q23) MUTATED DEL PEAK 25(18Q23) WILD-TYPE
  CLUS_1                         17                           28
  CLUS_2                          7                           39
  CLUS_3                          7                           18
  CLUS_4                         18                           42
D42V6, multiclass
        clus
vv       DEL PEAK 25(18Q23) MUTATED DEL PEAK 25(18Q23) WILD-TYPE
  CLUS_1                          8                           22
  CLUS_2                         16                           53
  CLUS_3                         25                           52

Clustering(43) Variable = Del Peak 26(21q22.2) mutation analysis
D43V1, multiclass
        clus
vv       DEL PEAK 26(21Q22.2) MUTATED DEL PEAK 26(21Q22.2) WILD-TYPE
  CLUS_1                            0                             39
  CLUS_2                           38                             45
  CLUS_3                           19                             35
  CLUS_4                            1                              0
D43V2, multiclass
        clus
vv       DEL PEAK 26(21Q22.2) MUTATED DEL PEAK 26(21Q22.2) WILD-TYPE
  CLUS_1                            4                             49
  CLUS_2                            9                             41
  CLUS_3                           44                             24
D43V3, multiclass
        clus
vv       DEL PEAK 26(21Q22.2) MUTATED DEL PEAK 26(21Q22.2) WILD-TYPE
  CLUS_1                            4                             46
  CLUS_2                           14                             27
  CLUS_3                           32                             17
D43V4, multiclass
        clus
vv       DEL PEAK 26(21Q22.2) MUTATED DEL PEAK 26(21Q22.2) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                           27                             16
  CLUS_3                           20                             36
D43V5, multiclass
        clus
vv       DEL PEAK 26(21Q22.2) MUTATED DEL PEAK 26(21Q22.2) WILD-TYPE
  CLUS_1                           17                             28
  CLUS_2                           19                             27
  CLUS_3                            4                             21
  CLUS_4                           18                             42
D43V6, multiclass
        clus
vv       DEL PEAK 26(21Q22.2) MUTATED DEL PEAK 26(21Q22.2) WILD-TYPE
  CLUS_1                            4                             26
  CLUS_2                           32                             37
  CLUS_3                           22                             55

Clustering(44) Variable = Del Peak 27(21q22.3) mutation analysis
D44V1, multiclass
        clus
vv       DEL PEAK 27(21Q22.3) MUTATED DEL PEAK 27(21Q22.3) WILD-TYPE
  CLUS_1                            0                             39
  CLUS_2                           38                             45
  CLUS_3                           19                             35
  CLUS_4                            0                              1
D44V2, multiclass
        clus
vv       DEL PEAK 27(21Q22.3) MUTATED DEL PEAK 27(21Q22.3) WILD-TYPE
  CLUS_1                            5                             48
  CLUS_2                            8                             42
  CLUS_3                           42                             26
D44V3, multiclass
        clus
vv       DEL PEAK 27(21Q22.3) MUTATED DEL PEAK 27(21Q22.3) WILD-TYPE
  CLUS_1                            4                             46
  CLUS_2                           12                             29
  CLUS_3                           33                             16
D44V4, multiclass
        clus
vv       DEL PEAK 27(21Q22.3) MUTATED DEL PEAK 27(21Q22.3) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                           27                             16
  CLUS_3                           19                             37
D44V5, multiclass
        clus
vv       DEL PEAK 27(21Q22.3) MUTATED DEL PEAK 27(21Q22.3) WILD-TYPE
  CLUS_1                           17                             28
  CLUS_2                           19                             27
  CLUS_3                            3                             22
  CLUS_4                           18                             42
D44V6, multiclass
        clus
vv       DEL PEAK 27(21Q22.3) MUTATED DEL PEAK 27(21Q22.3) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                           34                             35
  CLUS_3                           20                             57
                     V1                      V2                      V3 
              "CN_CNMF"      "METHLYATION_CNMF"          "MRNASEQ_CNMF" 
                     V4                      V5                      V6 
"MRNASEQ_CHIERARCHICAL"           "MIRSEQ_CNMF"  "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
