Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-DX-A2IZ-01A-11D-A21P-01	TCGA-DX-A2J0-01A-11D-A21P-01	TCGA-DX-A2J1-01A-11D-A21P-01	TCGA-DX-A2J4-01A-32D-A21P-01	TCGA-DX-A3LS-01A-11D-A21P-01	TCGA-DX-A3LT-01A-12D-A21P-01	TCGA-DX-A3LU-01A-11D-A21P-01	TCGA-DX-A3LW-01A-21D-A21P-01	TCGA-DX-A3M1-01A-11D-A227-01	TCGA-DX-A3M2-01A-21D-A227-01	TCGA-DX-A3U5-01A-11D-A227-01	TCGA-FX-A2QS-01A-11D-A21P-01	TCGA-FX-A3NJ-01A-11D-A21P-01	TCGA-FX-A3NK-01A-11D-A21P-01	TCGA-FX-A3RE-01A-11D-A227-01	TCGA-FX-A3TO-01A-11D-A227-01	TCGA-HB-A2OT-01A-11D-A21P-01	TCGA-HB-A3L4-01A-11D-A21P-01	TCGA-IE-A3OV-01A-11D-A227-01	TCGA-IF-A3RQ-01A-11D-A227-01	TCGA-IS-A3K6-01A-11D-A21P-01	TCGA-IS-A3K7-01A-11D-A21P-01	TCGA-IS-A3K8-01A-11D-A21P-01	TCGA-IS-A3KA-01A-11D-A21P-01	TCGA-IW-A3M4-01A-11D-A21P-01	TCGA-IW-A3M5-01A-22D-A21P-01	TCGA-IW-A3M6-01A-11D-A21P-01	TCGA-K1-A3PN-01A-11D-A227-01	TCGA-K1-A3PO-01A-11D-A21P-01	
Amplification Peak  1	1q24.3  	chr1:171188058-172510147(probes 81140:82028)  	chr1:171485936-171922363(probes 81316:81629)  	chr1:171485936-171924451(probes 81316:81632)  	0.19479	    0.19479		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	2	0	0	0	1	0	0	0	1	0	2	0	0	0	1	1	1	1	2	0	0	0	0	0	0	2	0	0	
Amplification Peak  2	4p15.2  	chr4:25503978-26095818(probes 382274:382651)    	chr4:25998768-26018041(probes 382580:382593)    	chr4:25998768-26021478(probes 382580:382596)    	0.1696	     0.1696		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	1	2	0	1	0	2	0	0	0	0	1	2	0	0	0	1	0	1	0	0	0	0	0	
Amplification Peak  3	5p14.2  	chr5:23432984-23709942(probes 483418:483584)    	chr5:23446584-23591454(probes 483430:483511)    	chr5:23435616-23710643(probes 483419:483586)    	0.0070848	    0.27354		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	0	0	0	0	2	2	0	0	2	0	0	0	0	0	2	2	0	0	0	1	0	0	0	0	0	0	1	0	
Amplification Peak  4	5p14.1  	chr5:24837900-24942127(probes 484248:484305)    	chr5:24920790-24942092(probes 484288:484304)    	chr5:24843956-24944404(probes 484249:484307)    	0.023365	   0.067484		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	1	0	0	0	0	0	0	0	2	0	2	0	0	0	2	2	0	0	0	1	0	0	0	0	1	0	1	0	
Amplification Peak  5	6p21.1  	chr6:41698135-42692619(probes 595111:595646)    	chr6:42515373-42555783(probes 595556:595568)    	chr6:41700391-42698604(probes 595112:595648)    	0.0070848	  0.0070848		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	2	2	0	0	1	0	2	0	0	0	0	1	0	0	0	0	0	0	2	0	1	0	0	0	
Amplification Peak  6	6q25.1  	chr6:148792599-150644383(probes 653881:655093)	chr6:150034758-150080387(probes 654726:654740)	chr6:150034758-150528607(probes 654726:655010)	0.095445	   0.095445		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	2	0	0	1	2	0	0	0	2	0	0	2	0	0	1	0	0	2	0	1	0	0	0	2	0	0	0	
Amplification Peak  7	7p15.3  	chr7:18906542-36312081(probes 676053:687155)    	chr7:23210130-23215687(probes 678566:678567)    	chr7:23121043-23220802(probes 678491:678570)    	0.14919	    0.14919		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	1	0	1	1	1	2	2	0	0	0	2	1	0	0	0	0	1	0	0	0	1	0	0	0	
Amplification Peak  8	12p13.32	chr12:4747451-5351735(probes 1058190:1058728)    	chr12:5175404-5235861(probes 1058561:1058608)    	chr12:5175404-5238214(probes 1058561:1058611)    	0.063418	   0.063418		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	2	0	1	0	0	0	0	0	2	0	0	2	0	2	0	0	0	0	0	2	0	0	0	1	0	0	0	
Amplification Peak  9	12q14.1 	chr12:58104883-58163019(probes 1085671:1085703)	chr12:58105108-58162738(probes 1085672:1085702)	chr12:57863031-59196858(probes 1085567:1086423)	1.4484e-20	 1.4484e-20		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	2	2	2	2	2	2	2	2	1	2	2	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	
Amplification Peak 10	17p11.2 	chr17:8948105-25270799(probes 1325430:1331187)  	chr17:18666019-18686729(probes 1330291:1330295)	chr17:18666019-18692669(probes 1330291:1330298)	0.12887	    0.12887		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	1	2	0	0	0	1	2	2	1	0	0	0	0	0	0	0	0	0	2	0	
Amplification Peak 11	19p13.2 	chr19:9576119-11301146(probes 1404274:1405012)  	chr19:10892009-10925630(probes 1404844:1404853)	chr19:10892009-10932172(probes 1404844:1404856)	0.14919	    0.14919		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	1	0	2	2	0	0	1	0	1	1	2	0	2	1	1	0	0	2	0	0	0	0	0	0	1	0	0	0	
Deletion Peak  1	1q44    	chr1:190593650-249250621(probes 92958:129196)   	chr1:247261526-249250621(probes 128884:129196)    	chr1:247239992-249250621(probes 128868:129196)    	0.1748	     0.1748		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	0	1	1	1	0	0	0	1	1	0	0	1	0	0	0	1	0	0	0	0	0	
Deletion Peak  2	2q37.3  	chr2:242162274-243199373(probes 260384:260556)  	chr2:242408088-242453980(probes 260511:260539)    	chr2:234980171-243199373(probes 255996:260556)    	0.0029586	  0.0029586		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	1	1	1	0	0	0	1	1	1	1	1	1	1	1	0	1	0	0	1	0	0	
Deletion Peak  3	3q25.1  	chr3:9741309-198022430(probes 264906:366983)      	chr3:147099799-154148749(probes 341092:345107)    	chr3:147099799-149812266(probes 341092:342494)    	0.20697	    0.20697		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	0	0	1	1	0	1	0	1	1	0	0	0	0	0	0	1	0	0	1	1	0	0	0	
Deletion Peak  4	4q35.1  	chr4:54241403-191154276(probes 395988:469776)    	chr4:186346211-186421723(probes 468298:468317)    	chr4:186354724-186695207(probes 468300:468539)    	0.16769	    0.16769		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	1	1	0	1	1	1	0	1	0	0	0	1	1	1	0	0	0	0	0	1	0	1	1	0	0	
Deletion Peak  5	5q23.3  	chr5:126385194-180915260(probes 537565:570327)  	chr5:130487958-130545024(probes 539847:539878)    	chr5:130077039-130970551(probes 539654:540077)    	0.18917	    0.19141		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	
Deletion Peak  6	9p21.3  	chr9:21865498-22448737(probes 843251:843615)      	chr9:21959052-21997722(probes 843302:843315)        	chr9:21320827-22565117(probes 842923:843662)        	0.0015041	  0.0015041		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	0	0	1	1	1	1	1	0	0	1	0	1	0	0	0	0	1	0	0	0	1	1	0	0	
Deletion Peak  7	11p15.4 	chr11:1-15988821(probes 978772:988322)             	chr11:5358325-5528176(probes 980927:981088)          	chr11:5448932-5450647(probes 981008:981009)          	0.13543	    0.13584		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	1	1	0	1	1	0	1	0	0	0	1	1	1	0	0	0	0	0	0	0	0	1	1	1	0	
Deletion Peak  8	11q22.3 	chr11:76060285-135006516(probes 1018694:1056059)	chr11:104752140-105017922(probes 1036356:1036496)	chr11:104428729-105250564(probes 1036248:1036626)	0.12242	    0.12242		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	1	0	0	1	0	0	1	1	1	1	0	1	0	0	1	1	1	1	0	0	0	1	0	1	1	0	0	
Deletion Peak  9	12p12.3 	chr12:1-39688977(probes 1056060:1075866)           	chr12:14918902-16059147(probes 1063934:1064559)    	chr12:10717443-21861085(probes 1061318:1068085)    	0.048906	   0.048906		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	0	1	0	1	0	1	1	0	1	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	
Deletion Peak 10	13q14.2 	chr13:48833767-49064807(probes 1148630:1148881)  	chr13:48875753-49060837(probes 1148653:1148879)    	chr13:39474136-70331228(probes 1142633:1158692)    	0.00077814	 0.00077814		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	1	1	0	0	1	0	0	1	1	1	1	1	1	1	1	1	1	1	0	1	1	0	1	1	0	
Deletion Peak 11	15q13.3 	chr15:1-81251100(probes 1236180:1268788)         	chr15:31193675-32932097(probes 1238895:1239421)    	chr15:31174028-32932818(probes 1238885:1239422)    	0.20697	    0.20697		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	1	1	0	0	0	0	0	1	0	1	0	0	1	0	0	1	0	1	0	0	1	1	0	0	0	
Deletion Peak 12	17p13.1 	chr17:7613709-7744654(probes 1324708:1324766)      	chr17:7617433-7743098(probes 1324711:1324765)        	chr17:7689042-7691109(probes 1324739:1324740)        	0.16078	    0.14688		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	1	0	1	1	0	0	0	1	0	1	0	
Deletion Peak 13	17q25.3 	chr17:80331848-80617015(probes 1358229:1358380)  	chr17:80339730-80415913(probes 1358231:1358251)    	chr17:80368377-80373499(probes 1358238:1358239)    	0.17141	    0.17141		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	0	0	1	1	0	0	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	
Deletion Peak 14	19q13.32	chr19:42823902-59128983(probes 1418678:1425193)  	chr19:45748355-45810034(probes 1419879:1419910)    	chr19:45792175-45796849(probes 1419895:1419896)    	0.20445	    0.20587		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	0	1	0	0	0	0	0	1	0	1	1	1	0	0	1	0	0	0	0	1	1	0	1	1	0	
Deletion Peak 15	21q22.3 	chr21:46289952-48129895(probes 1482562:1483085)  	chr21:47516030-47609222(probes 1483006:1483038)    	chr21:47488074-47609222(probes 1483001:1483038)    	0.06465	   0.064052		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	0	0	0	1	1	0	1	1	0	0	0	1	1	0	0	0	0	1	0	0	0	1	1	1	0	
Deletion Peak 16	Xq21.1  	chrX:76710176-77102528(probes 1529096:1529126)    	chrX:76722851-77070309(probes 1529101:1529125)      	chrX:76290521-76993271(probes 1529072:1529120)      	0.003065	   0.003065		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	0	0	0	1	1	0	1	1	0	1	1	0	1	1	1	1	0	1	0	0	1	0	1	1	0	
Deletion Peak 17	Xq28    	chrX:147107975-149615811(probes 1561067:1562181)	chrX:148608171-148623035(probes 1561884:1561890)  	chrX:148077607-149572733(probes 1561598:1562157)  	0.026218	   0.027178		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	1	1	1	1	1	0	0	0	1	1	0	1	1	0	
Amplification Peak  1 - CN values	1q24.3  	chr1:171188058-172510147(probes 81140:82028)  	chr1:171485936-171922363(probes 81316:81629)  	chr1:171485936-171924451(probes 81316:81632)  	0.19479	    0.19479		Actual Copy Change Given	0.0063871	3.6569	0.0021812	0.0063871	0.074804	0.32624	0.00041593	0.049824	0	0.40902	-0.55857	3.6569	0.0060309	0.0056919	0.035524	0.15801	0.34397	0.86116	0.58596	1.354	0.010871	0.097542	0.017375	0.018523	0.016146	0.08789	0.90291	0.021463	0.00041593	
Amplification Peak  2 - CN values	4p15.2  	chr4:25503978-26095818(probes 382274:382651)    	chr4:25998768-26018041(probes 382580:382593)    	chr4:25998768-26021478(probes 382580:382596)    	0.1696	     0.1696		Actual Copy Change Given	-0.89037	-0.03073	-0.0023553	-0.0022168	-0.024928	-0.2429	0.51682	3.6569	0.035806	0.11059	-0.023429	3.4513	-0.016841	-0.018353	0.030136	0.059937	0.31411	0.98846	-0.021314	0.010424	-0.025866	0.13924	-0.010537	0.45615	-0.013127	-0.57245	0.085799	0.001803	-0.0023553	
Amplification Peak  3 - CN values	5p14.2  	chr5:23432984-23709942(probes 483418:483584)    	chr5:23446584-23591454(probes 483430:483511)    	chr5:23435616-23710643(probes 483419:483586)    	0.0070848	    0.27354		Actual Copy Change Given	3.6569	-0.032094	-0.0008316	0.003191	0.0022262	3.493	3.6569	0.0050532	0.024548	1.8366	0.0065262	-0.37586	0.00041593	0.0062481	0.049495	1.9586	1.1462	0.040044	-0.0031859	-0.071071	0.80873	-0.61945	-0.0014143	-0.042245	0	-0.071812	0.054337	0.40827	-0.0027707	
Amplification Peak  4 - CN values	5p14.1  	chr5:24837900-24942127(probes 484248:484305)    	chr5:24920790-24942092(probes 484288:484304)    	chr5:24843956-24944404(probes 484249:484307)    	0.023365	   0.067484		Actual Copy Change Given	3.6569	0.88538	-0.0008316	0.003191	0.0022262	-0.57297	0.0055529	0.0050532	-0.40628	2.5702	0.0065262	3.6569	0.00041593	0.0062481	0.069956	1.9586	1.1462	0.040044	-0.0031859	-0.071071	0.80873	-0.61945	-0.0014143	-0.042245	0	0.52144	0.054337	0.40827	-0.0027707	
Amplification Peak  5 - CN values	6p21.1  	chr6:41698135-42692619(probes 595111:595646)    	chr6:42515373-42555783(probes 595556:595568)    	chr6:41700391-42698604(probes 595112:595648)    	0.0070848	  0.0070848		Actual Copy Change Given	0.0033509	0.0092554	-0.0013858	0.0012481	0.010571	3.6565	3.6569	0	-0.83994	0.801	-0.0051227	2.1852	-0.0085766	0.00041593	0.019503	0.074121	0.18413	0.032704	0.026292	-0.0087259	-0.067297	0.086811	-0.0015528	3.6569	-0.03681	0.5162	-0.64424	-1.0019	-0.37977	
Amplification Peak  6 - CN values	6q25.1  	chr6:148792599-150644383(probes 653881:655093)	chr6:150034758-150080387(probes 654726:654740)	chr6:150034758-150528607(probes 654726:655010)	0.095445	   0.095445		Actual Copy Change Given	0.0058309	0.0092554	1.1978	0.0012481	0.0036145	0.37054	1.4553	0.019923	0.054091	-0.10796	3.6569	0.022585	-0.0085766	1.7329	-0.78564	-0.36625	0.18413	0.04883	-0.55226	3.5125	-0.062602	0.10672	0.0048293	-0.069198	-0.0013858	1.5097	0.087824	-0.09644	-0.0016629	
Amplification Peak  7 - CN values	7p15.3  	chr7:18906542-36312081(probes 676053:687155)    	chr7:23210130-23215687(probes 678566:678567)    	chr7:23121043-23220802(probes 678491:678570)    	0.14919	    0.14919		Actual Copy Change Given	0.014933	0.00022316	0.0007534	-0.0092666	0.02877	0.35291	0	0.3561	0.83844	0.62887	3.6569	3.6569	0.00013863	0.008892	0.041034	0.93142	0.36798	0.010564	-0.57467	0.011818	-0.0064772	0.14429	0.0041346	-0.11548	-0.03681	0.28857	-0.64612	-0.056712	0.0024969	
Amplification Peak  8 - CN values	12p13.32	chr12:4747451-5351735(probes 1058190:1058728)    	chr12:5175404-5235861(probes 1058561:1058608)    	chr12:5175404-5238214(probes 1058561:1058611)    	0.063418	   0.063418		Actual Copy Change Given	0.0066653	-0.13734	3.6569	-0.00069303	0.6572	-0.80939	-0.0071958	-0.86354	0.03369	-0.11842	1.5675	-0.039937	-0.14014	1.886	0.023145	2.4648	-0.0013074	-0.010103	0	0.0027745	-0.54742	1.3263	0.0064976	-0.0501	0.0095883	0.1605	0	-0.03245	-0.0012473	
Amplification Peak  9 - CN values	12q14.1 	chr12:58104883-58163019(probes 1085671:1085703)	chr12:58105108-58162738(probes 1085672:1085702)	chr12:57863031-59196858(probes 1085567:1086423)	1.4484e-20	 1.4484e-20		Actual Copy Change Given	3.6569	3.6569	3.6569	3.6569	3.6569	3.6569	3.6569	3.6569	3.6569	0.17625	3.6569	3.6569	-0.14014	3.6569	0.023145	-0.048748	-0.0013074	0.013416	-0.0033243	3.6569	0.00030511	0.022024	0.0064976	-0.049559	0.0026357	0.0039488	0	-0.03245	-0.0012473	
Amplification Peak 10 - CN values	17p11.2 	chr17:8948105-25270799(probes 1325430:1331187)  	chr17:18666019-18686729(probes 1330291:1330295)	chr17:18666019-18692669(probes 1330291:1330298)	0.12887	    0.12887		Actual Copy Change Given	-0.053341	0.080112	0.00041593	0.001392	-0.01711	-0.30815	-0.011335	0.010285	-0.39085	0.30002	1.5296	-0.024251	0.062651	-0.0091286	0.3894	2.4931	1.579	0.82223	0.008892	-0.013953	-0.83872	-0.56972	0.071218	-0.098437	0.049682	-0.53526	0.086558	3.6569	0.013492	
Amplification Peak 11 - CN values	19p13.2 	chr19:9576119-11301146(probes 1404274:1405012)  	chr19:10892009-10925630(probes 1404844:1404853)	chr19:10892009-10932172(probes 1404844:1404856)	0.14919	    0.14919		Actual Copy Change Given	-0.056307	0.16664	-0.0013858	1.6073	1.7795	-0.26059	-0.023703	0.29612	-0.076412	0.13117	0.42284	1.2032	0.044574	3.6569	0.57255	0.51821	-0.054883	-0.080008	1.1733	-0.019314	0.056684	-0.028765	0.092575	-0.029584	0.035665	0.47818	-0.14502	0.04259	0.027919	
Deletion Peak  1 - CN values	1q44    	chr1:190593650-249250621(probes 92958:129196)   	chr1:247261526-249250621(probes 128884:129196)    	chr1:247239992-249250621(probes 128868:129196)    	0.1748	     0.1748		Actual Copy Change Given	0.0063871	0.7913	0.0021812	0.0095883	0.29088	0.22945	0.00041593	-0.84851	0	-0.25309	-0.57101	-0.16802	0.0060309	-0.00097017	-0.014489	-0.96258	-0.21706	0.86116	0.58596	-0.82497	0	-0.05174	0.015838	-0.39553	0.016146	0.52704	0.90291	0.021463	0.00041593	
Deletion Peak  2 - CN values	2q37.3  	chr2:242162274-243199373(probes 260384:260556)  	chr2:242408088-242453980(probes 260511:260539)    	chr2:234980171-243199373(probes 255996:260556)    	0.0029586	  0.0029586		Actual Copy Change Given	0.00458	0.015672	0.00589	0.0058309	-0.0024869	0.050961	0.0044411	-0.43691	-0.90538	-0.21522	-0.57664	-0.054555	-0.00041585	0.0058309	-0.41564	-0.48355	-0.77841	-0.96853	-0.55557	-0.39263	-0.88246	-0.63708	0.038318	-0.91153	-0.018884	0.055865	-0.64452	0.017404	0.016006	
Deletion Peak  3 - CN values	3q25.1  	chr3:9741309-198022430(probes 264906:366983)      	chr3:147099799-154148749(probes 341092:345107)    	chr3:147099799-149812266(probes 341092:342494)    	0.20697	    0.20697		Actual Copy Change Given	0.022304	-0.0082163	-0.0012473	-0.0027707	0	-0.55297	-0.087782	0.0036857	-0.18131	-0.23552	0.53854	-0.56525	0	-0.64198	-0.80657	0.077862	0.18837	0.010842	0.016565	0.008868	-0.0099288	-0.63034	-0.016778	0	-0.8244	-0.44852	-0.0049844	0	0.00027728	
Deletion Peak  4 - CN values	4q35.1  	chr4:54241403-191154276(probes 395988:469776)    	chr4:186346211-186421723(probes 468298:468317)    	chr4:186354724-186695207(probes 468300:468539)    	0.16769	    0.16769		Actual Copy Change Given	-0.90396	-0.046771	-0.0023553	-0.0022168	-0.38055	-0.2429	0.0022193	-0.48395	-0.40904	-0.2515	0.024969	-0.55136	-0.016841	-0.018353	0.00013863	-0.33433	-0.39867	-0.99708	-0.005814	0.010424	-0.032606	0.21376	-0.010537	-0.91507	-0.013127	-0.38432	-0.32089	0.0063405	-0.0023553	
Deletion Peak  5 - CN values	5q23.3  	chr5:126385194-180915260(probes 537565:570327)  	chr5:130487958-130545024(probes 539847:539878)    	chr5:130077039-130970551(probes 539654:540077)    	0.18917	    0.19141		Actual Copy Change Given	0.03434	0.014694	0.0013357	0.003191	0.0090382	0.057796	0.0055529	0.0025855	-1.0411	0.081241	-0.57674	-0.54603	0.00041593	0.0062481	0.069956	0.57916	-0.26606	-0.99074	0.58955	-0.78235	-0.0017736	0.14483	-0.0014143	0.35512	-0.013402	-0.0090656	0.054337	0.012237	0.0012481	
Deletion Peak  6 - CN values	9p21.3  	chr9:21865498-22448737(probes 843251:843615)      	chr9:21959052-21997722(probes 843302:843315)        	chr9:21320827-22565117(probes 842923:843662)        	0.0015041	  0.0015041		Actual Copy Change Given	-0.0053938	0.017769	0.0049969	-0.0026322	-0.37976	-0.018902	0.00597	-0.24302	-0.82733	-0.22411	-1.1236	-0.54885	-0.0038779	0.0048579	-1.2929	0.43479	-0.22027	0.014051	0.48889	-0.0036156	0.0028024	-0.61863	0.019894	0.27726	0.020497	-1.2929	-1.2929	0.050677	-0.0031859	
Deletion Peak  7 - CN values	11p15.4 	chr11:1-15988821(probes 978772:988322)             	chr11:5358325-5528176(probes 980927:981088)          	chr11:5448932-5450647(probes 981008:981009)          	0.13543	    0.13584		Actual Copy Change Given	-0.015054	-0.76735	-0.0045695	-0.0016629	-0.3801	-0.47078	0.00069327	-0.81729	-0.82513	-0.052882	-0.54925	-0.017391	0.0043021	0.0019418	-0.45415	-0.91935	-0.16159	0.0051359	-0.028218	0.79549	0.025613	0.012237	0.0083486	0.38308	0.013353	-0.52568	-0.53683	-0.47247	0.0010311	
Deletion Peak  8 - CN values	11q22.3 	chr11:76060285-135006516(probes 1018694:1056059)	chr11:104752140-105017922(probes 1036356:1036496)	chr11:104428729-105250564(probes 1036248:1036626)	0.12242	    0.12242		Actual Copy Change Given	-0.015054	-0.79889	-0.15472	-0.0016629	-0.00027035	-0.54451	-0.0062946	-0.022856	-0.90069	-0.2871	-0.56776	-0.56286	0.0043021	-0.13955	0.0022193	0.52906	-0.16159	-0.95166	-0.56186	-0.81827	0.0065541	-0.056981	0.0090026	-0.47438	0.013353	-0.54497	-0.63102	-0.037354	0.0010311	
Deletion Peak  9 - CN values	12p12.3 	chr12:1-39688977(probes 1056060:1075866)           	chr12:14918902-16059147(probes 1063934:1064559)    	chr12:10717443-21861085(probes 1061318:1068085)    	0.048906	   0.048906		Actual Copy Change Given	0.0066653	-0.13734	-0.043737	-0.00069303	0.6572	-0.82944	-0.0071958	-0.86354	0.03369	-0.11842	-0.58019	0.014888	-0.14014	-0.64067	0.023145	0.73739	-0.0013074	-0.95811	0	-0.81991	0.00030511	0.53731	0.0064976	-0.0501	0.0095883	0.1605	0	-0.03245	-0.0012473	
Deletion Peak 10 - CN values	13q14.2 	chr13:48833767-49064807(probes 1148630:1148881)  	chr13:48875753-49060837(probes 1148653:1148879)    	chr13:39474136-70331228(probes 1142633:1158692)    	0.00077814	 0.00077814		Actual Copy Change Given	0.027919	-0.90003	-0.0018014	-0.0029091	-0.38089	-0.23692	0.0034687	-0.028081	-0.82538	-0.07275	0.0012481	-0.54854	-0.911	-0.51753	-0.77363	-1.2745	-0.21323	-1.2929	-1.2929	-0.81433	-1.2929	-0.64387	-0.018519	-0.4787	-0.88302	0	-0.61575	-0.9186	-0.0055375	
Deletion Peak 11 - CN values	15q13.3 	chr15:1-81251100(probes 1236180:1268788)         	chr15:31193675-32932097(probes 1238895:1239421)    	chr15:31174028-32932818(probes 1238885:1239422)    	0.20697	    0.20697		Actual Copy Change Given	-0.94423	-0.068305	0.0077783	0.01062	-0.30803	-0.47596	-0.011887	-0.096379	0.027266	-0.042729	0.025812	-0.67793	0.026795	-0.47141	-0.035857	-0.052666	-0.10216	-0.017529	-0.032145	-0.41267	0.0072497	-0.64299	0.041288	0.48509	-0.86712	-0.582	-0.070269	0.0068044	-0.003575	
Deletion Peak 12 - CN values	17p13.1 	chr17:7613709-7744654(probes 1324708:1324766)      	chr17:7617433-7743098(probes 1324711:1324765)        	chr17:7689042-7691109(probes 1324739:1324740)        	0.16078	    0.14688		Actual Copy Change Given	-0.053341	0.080112	0.00041593	0.001392	-0.01711	-0.30815	-0.011335	0.010285	0.065656	0.48793	0.030169	-0.024251	-0.86923	-0.0091286	0.40011	1.1093	-0.20329	-0.078677	-0.52634	-0.013953	-0.85542	-0.58811	0.071218	-0.095912	0.049682	-0.55952	0.10103	-0.97955	0.013492	
Deletion Peak 13 - CN values	17q25.3 	chr17:80331848-80617015(probes 1358229:1358380)  	chr17:80339730-80415913(probes 1358231:1358251)    	chr17:80368377-80373499(probes 1358238:1358239)    	0.17141	    0.17141		Actual Copy Change Given	-0.053341	0.96424	0.00041593	-0.019589	-0.01711	-0.31536	-0.011335	0.079735	-0.80823	-0.21871	0.0051359	-0.020001	-0.89194	-0.0091286	1.1145	0.6148	0.16333	-0.047395	-0.5715	-0.00097017	0.040527	0.085076	0.061638	-0.47765	0.87807	0.054013	0.086558	0.022164	0.013492	
Deletion Peak 14 - CN values	19q13.32	chr19:42823902-59128983(probes 1418678:1425193)  	chr19:45748355-45810034(probes 1419879:1419910)    	chr19:45792175-45796849(probes 1419895:1419896)    	0.20445	    0.20587		Actual Copy Change Given	-0.056307	-0.79831	-0.011421	-0.0088526	-0.027665	-0.27296	-0.023703	-0.079476	-0.076412	0.049318	-0.037354	-0.56654	-0.00027724	-0.10788	-0.19525	-0.58068	-0.04813	-0.080008	-1.1368	-0.019314	0.042902	-0.028765	0.092575	-0.12642	-0.83922	-0.0075471	-0.14502	-0.93909	0.010424	
Deletion Peak 15 - CN values	21q22.3 	chr21:46289952-48129895(probes 1482562:1483085)  	chr21:47516030-47609222(probes 1483006:1483038)    	chr21:47488074-47609222(probes 1483001:1483038)    	0.06465	   0.064052		Actual Copy Change Given	0.61885	-0.92863	0.0033299	0.0079175	-0.0039253	0.0033299	0.0015255	-0.46993	-0.41388	0.14882	-1.266	-0.59701	0.010703	-0.0060904	0.029466	-0.99514	-0.17581	-0.0099565	0.39147	0.030732	0.038517	-0.6009	0.014022	0.27253	0.033408	-0.62279	-0.63282	-0.10368	0.0012481	
Deletion Peak 16 - CN values	Xq21.1  	chrX:76710176-77102528(probes 1529096:1529126)    	chrX:76722851-77070309(probes 1529101:1529125)      	chrX:76290521-76993271(probes 1529072:1529120)      	0.003065	   0.003065		Actual Copy Change Given	-0.063435	-0.1884	0.029606	0.019095	-0.056974	-0.055756	0.038065	-1.2929	-1.1613	0.076486	-0.99646	-0.11417	-0.082668	-1.0585	-0.46579	1.7942	-0.17036	-0.47056	-0.41893	-0.4773	0.40681	-0.25479	-0.08243	0.70738	-0.1945	-0.038244	-0.44954	-0.15625	-0.0099288	
Deletion Peak 17 - CN values	Xq28    	chrX:147107975-149615811(probes 1561067:1562181)	chrX:148608171-148623035(probes 1561884:1561890)  	chrX:148077607-149572733(probes 1561598:1562157)  	0.026218	   0.027178		Actual Copy Change Given	-0.071956	-0.13799	0.029606	0.019095	-0.043324	-0.055756	0.038065	-0.29638	-0.93511	0.87616	0.043067	3.6569	-0.082668	-0.013953	-0.079742	-1.2929	-0.17036	-1.2328	-0.55491	-0.52604	0.45278	0.1634	-0.08243	-0.62446	-0.17639	-0.038244	-0.44954	-0.15625	-0.0099288	
