
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.47.4101/CNV2ClinicalAnalysis_nozzle_onlysig_focal.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvs_onlysig.47.4101/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/351861/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/STAD-TP/2589043/1.GDAC_clinicalDataPicker.Finished/STAD-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=STAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=STAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=162, in cluster file=237, common to both=161
[1]  72 161
[1] "Amp Peak  1(1p36.22) mutation analysis"
[1] 3
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                            22                            139 
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                            22                            139 
[1] "Amp Peak  2(1q21.3) mutation analysis"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                           50                           111 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                           50                           111 
[1] "Amp Peak  3(1q42.3) mutation analysis"
[1] 3
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           47                           114 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           47                           114 
[1] "Amp Peak  4(3q26.31) mutation analysis"
[1] 3
  AMP PEAK  4(3Q26.31) MUTATED AMP PEAK  4(3Q26.31) WILD-TYPE 
                            48                            113 
  AMP PEAK  4(3Q26.31) MUTATED AMP PEAK  4(3Q26.31) WILD-TYPE 
                            48                            113 
[1] "Amp Peak  5(5p13.1) mutation analysis"
[1] 3
  AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE 
                           44                           117 
  AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE 
                           44                           117 
[1] "Amp Peak  6(6p21.1) mutation analysis"
[1] 3
  AMP PEAK  6(6P21.1) MUTATED AMP PEAK  6(6P21.1) WILD-TYPE 
                           45                           116 
  AMP PEAK  6(6P21.1) MUTATED AMP PEAK  6(6P21.1) WILD-TYPE 
                           45                           116 
[1] "Amp Peak  7(6q12) mutation analysis"
[1] 3
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                         33                         128 
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                         33                         128 
[1] "Amp Peak  8(7p11.2) mutation analysis"
[1] 3
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                           69                            92 
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                           69                            92 
[1] "Amp Peak  9(7q21.2) mutation analysis"
[1] 3
  AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE 
                           71                            90 
  AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE 
                           71                            90 
[1] "Amp Peak 10(8p23.1) mutation analysis"
[1] 3
  AMP PEAK 10(8P23.1) MUTATED AMP PEAK 10(8P23.1) WILD-TYPE 
                           59                           102 
  AMP PEAK 10(8P23.1) MUTATED AMP PEAK 10(8P23.1) WILD-TYPE 
                           59                           102 
[1] "Amp Peak 11(8q24.21) mutation analysis"
[1] 3
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                           102                             59 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                           102                             59 
[1] "Amp Peak 12(9p24.1) mutation analysis"
[1] 3
  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                           22                           139 
  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                           22                           139 
[1] "Amp Peak 13(9q34.3) mutation analysis"
[1] 3
  AMP PEAK 13(9Q34.3) MUTATED AMP PEAK 13(9Q34.3) WILD-TYPE 
                           39                           122 
  AMP PEAK 13(9Q34.3) MUTATED AMP PEAK 13(9Q34.3) WILD-TYPE 
                           39                           122 
[1] "Amp Peak 14(10q26.13) mutation analysis"
[1] 3
  AMP PEAK 14(10Q26.13) MUTATED AMP PEAK 14(10Q26.13) WILD-TYPE 
                             33                             128 
  AMP PEAK 14(10Q26.13) MUTATED AMP PEAK 14(10Q26.13) WILD-TYPE 
                             33                             128 
[1] "Amp Peak 15(11p13) mutation analysis"
[1] 3
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                          25                          136 
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                          25                          136 
[1] "Amp Peak 16(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                            28                            133 
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                            28                            133 
[1] "Amp Peak 17(12p12.1) mutation analysis"
[1] 3
  AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE 
                            37                            124 
  AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE 
                            37                            124 
[1] "Amp Peak 18(12q15) mutation analysis"
[1] 3
  AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE 
                          35                          126 
  AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE 
                          35                          126 
[1] "Amp Peak 19(13q12.3) mutation analysis"
[1] 3
  AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE 
                            58                            103 
  AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE 
                            58                            103 
[1] "Amp Peak 20(13q22.1) mutation analysis"
[1] 3
  AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE 
                            65                             96 
  AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE 
                            65                             96 
[1] "Amp Peak 21(15q26.1) mutation analysis"
[1] 3
  AMP PEAK 21(15Q26.1) MUTATED AMP PEAK 21(15Q26.1) WILD-TYPE 
                            40                            121 
  AMP PEAK 21(15Q26.1) MUTATED AMP PEAK 21(15Q26.1) WILD-TYPE 
                            40                            121 
[1] "Amp Peak 22(17q12) mutation analysis"
[1] 3
  AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE 
                          43                          118 
  AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE 
                          43                          118 
[1] "Amp Peak 23(18q11.2) mutation analysis"
[1] 3
  AMP PEAK 23(18Q11.2) MUTATED AMP PEAK 23(18Q11.2) WILD-TYPE 
                            44                            117 
  AMP PEAK 23(18Q11.2) MUTATED AMP PEAK 23(18Q11.2) WILD-TYPE 
                            44                            117 
[1] "Amp Peak 24(19q12) mutation analysis"
[1] 3
  AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE 
                          44                          117 
  AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE 
                          44                          117 
[1] "Amp Peak 25(20q13.2) mutation analysis"
[1] 3
  AMP PEAK 25(20Q13.2) MUTATED AMP PEAK 25(20Q13.2) WILD-TYPE 
                            99                             62 
  AMP PEAK 25(20Q13.2) MUTATED AMP PEAK 25(20Q13.2) WILD-TYPE 
                            99                             62 
[1] "Amp Peak 26(Xq27.3) mutation analysis"
[1] 3
  AMP PEAK 26(XQ27.3) MUTATED AMP PEAK 26(XQ27.3) WILD-TYPE 
                           32                           129 
  AMP PEAK 26(XQ27.3) MUTATED AMP PEAK 26(XQ27.3) WILD-TYPE 
                           32                           129 
[1] "Del Peak  1(1p36.11) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            40                            121 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            40                            121 
[1] "Del Peak  2(1p31.1) mutation analysis"
[1] 3
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                           26                           135 
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                           26                           135 
[1] "Del Peak  3(1q44) mutation analysis"
[1] 3
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         12                         149 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         12                         149 
[1] "Del Peak  4(2q32.1) mutation analysis"
[1] 3
  DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE 
                           19                           142 
  DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE 
                           19                           142 
[1] "Del Peak  5(2q33.3) mutation analysis"
[1] 3
  DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE 
                           16                           145 
  DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE 
                           16                           145 
[1] "Del Peak  6(2q37.2) mutation analysis"
[1] 3
  DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE 
                           22                           139 
  DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE 
                           22                           139 
[1] "Del Peak  7(3p26.1) mutation analysis"
[1] 3
  DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE 
                           38                           123 
  DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE 
                           38                           123 
[1] "Del Peak  8(3p14.2) mutation analysis"
[1] 3
  DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE 
                           51                           110 
  DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE 
                           51                           110 
[1] "Del Peak  9(3q26.31) mutation analysis"
[1] 3
  DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE 
                            13                            148 
  DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE 
                            13                            148 
[1] "Del Peak 10(4p16.3) mutation analysis"
[1] 3
  DEL PEAK 10(4P16.3) MUTATED DEL PEAK 10(4P16.3) WILD-TYPE 
                           49                           112 
  DEL PEAK 10(4P16.3) MUTATED DEL PEAK 10(4P16.3) WILD-TYPE 
                           49                           112 
[1] "Del Peak 11(4q22.1) mutation analysis"
[1] 3
  DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE 
                           60                           101 
  DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE 
                           60                           101 
[1] "Del Peak 12(4q35.1) mutation analysis"
[1] 3
  DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE 
                           59                           102 
  DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE 
                           59                           102 
[1] "Del Peak 13(5q11.2) mutation analysis"
[1] 3
  DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE 
                           45                           116 
  DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE 
                           45                           116 
[1] "Del Peak 14(6p25.3) mutation analysis"
[1] 3
  DEL PEAK 14(6P25.3) MUTATED DEL PEAK 14(6P25.3) WILD-TYPE 
                           34                           127 
  DEL PEAK 14(6P25.3) MUTATED DEL PEAK 14(6P25.3) WILD-TYPE 
                           34                           127 
[1] "Del Peak 15(6q26) mutation analysis"
[1] 3
  DEL PEAK 15(6Q26) MUTATED DEL PEAK 15(6Q26) WILD-TYPE 
                         35                         126 
  DEL PEAK 15(6Q26) MUTATED DEL PEAK 15(6Q26) WILD-TYPE 
                         35                         126 
[1] "Del Peak 16(6q27) mutation analysis"
[1] 3
  DEL PEAK 16(6Q27) MUTATED DEL PEAK 16(6Q27) WILD-TYPE 
                         34                         127 
  DEL PEAK 16(6Q27) MUTATED DEL PEAK 16(6Q27) WILD-TYPE 
                         34                         127 
[1] "Del Peak 17(7q31.1) mutation analysis"
[1] 3
  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                           19                           142 
  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                           19                           142 
[1] "Del Peak 18(7q36.3) mutation analysis"
[1] 3
  DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE 
                           29                           132 
  DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE 
                           29                           132 
[1] "Del Peak 19(8p23.2) mutation analysis"
[1] 3
  DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE 
                           40                           121 
  DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE 
                           40                           121 
[1] "Del Peak 20(9p23) mutation analysis"
[1] 3
  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                         63                          98 
  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                         63                          98 
[1] "Del Peak 21(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE 
                           59                           102 
  DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE 
                           59                           102 
[1] "Del Peak 22(9q21.11) mutation analysis"
[1] 3
  DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE 
                            31                            130 
  DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE 
                            31                            130 
[1] "Del Peak 23(10p14) mutation analysis"
[1] 3
  DEL PEAK 23(10P14) MUTATED DEL PEAK 23(10P14) WILD-TYPE 
                          21                          140 
  DEL PEAK 23(10P14) MUTATED DEL PEAK 23(10P14) WILD-TYPE 
                          21                          140 
[1] "Del Peak 24(10q22.3) mutation analysis"
[1] 3
  DEL PEAK 24(10Q22.3) MUTATED DEL PEAK 24(10Q22.3) WILD-TYPE 
                            24                            137 
  DEL PEAK 24(10Q22.3) MUTATED DEL PEAK 24(10Q22.3) WILD-TYPE 
                            24                            137 
[1] "Del Peak 25(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE 
                             37                             124 
  DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE 
                             37                             124 
[1] "Del Peak 26(11p15.5) mutation analysis"
[1] 3
  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                            37                            124 
  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                            37                            124 
[1] "Del Peak 27(11q23.2) mutation analysis"
[1] 3
  DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE 
                            34                            127 
  DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE 
                            34                            127 
[1] "Del Peak 28(12p13.2) mutation analysis"
[1] 3
  DEL PEAK 28(12P13.2) MUTATED DEL PEAK 28(12P13.2) WILD-TYPE 
                            24                            137 
  DEL PEAK 28(12P13.2) MUTATED DEL PEAK 28(12P13.2) WILD-TYPE 
                            24                            137 
[1] "Del Peak 29(14q21.1) mutation analysis"
[1] 3
  DEL PEAK 29(14Q21.1) MUTATED DEL PEAK 29(14Q21.1) WILD-TYPE 
                            36                            125 
  DEL PEAK 29(14Q21.1) MUTATED DEL PEAK 29(14Q21.1) WILD-TYPE 
                            36                            125 
[1] "Del Peak 30(14q32.33) mutation analysis"
[1] 3
  DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE 
                             40                             121 
  DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE 
                             40                             121 
[1] "Del Peak 31(15q11.2) mutation analysis"
[1] 3
  DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE 
                            39                            122 
  DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE 
                            39                            122 
[1] "Del Peak 32(15q15.1) mutation analysis"
[1] 3
  DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE 
                            40                            121 
  DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE 
                            40                            121 
[1] "Del Peak 33(16p13.3) mutation analysis"
[1] 3
  DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE 
                            20                            141 
  DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE 
                            20                            141 
[1] "Del Peak 34(16q23.1) mutation analysis"
[1] 3
  DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE 
                            56                            105 
  DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE 
                            56                            105 
[1] "Del Peak 35(17p12) mutation analysis"
[1] 3
  DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE 
                          55                          106 
  DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE 
                          55                          106 
[1] "Del Peak 36(17q24.3) mutation analysis"
[1] 3
  DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE 
                            23                            138 
  DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE 
                            23                            138 
[1] "Del Peak 37(18q21.2) mutation analysis"
[1] 3
  DEL PEAK 37(18Q21.2) MUTATED DEL PEAK 37(18Q21.2) WILD-TYPE 
                            63                             98 
  DEL PEAK 37(18Q21.2) MUTATED DEL PEAK 37(18Q21.2) WILD-TYPE 
                            63                             98 
[1] "Del Peak 38(18q22.3) mutation analysis"
[1] 3
  DEL PEAK 38(18Q22.3) MUTATED DEL PEAK 38(18Q22.3) WILD-TYPE 
                            59                            102 
  DEL PEAK 38(18Q22.3) MUTATED DEL PEAK 38(18Q22.3) WILD-TYPE 
                            59                            102 
[1] "Del Peak 39(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE 
                            49                            112 
  DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE 
                            49                            112 
[1] "Del Peak 40(19q13.11) mutation analysis"
[1] 3
  DEL PEAK 40(19Q13.11) MUTATED DEL PEAK 40(19Q13.11) WILD-TYPE 
                             21                             140 
  DEL PEAK 40(19Q13.11) MUTATED DEL PEAK 40(19Q13.11) WILD-TYPE 
                             21                             140 
[1] "Del Peak 41(20p12.1) mutation analysis"
[1] 3
  DEL PEAK 41(20P12.1) MUTATED DEL PEAK 41(20P12.1) WILD-TYPE 
                            24                            137 
  DEL PEAK 41(20P12.1) MUTATED DEL PEAK 41(20P12.1) WILD-TYPE 
                            24                            137 
[1] "Del Peak 42(21q11.2) mutation analysis"
[1] 3
  DEL PEAK 42(21Q11.2) MUTATED DEL PEAK 42(21Q11.2) WILD-TYPE 
                            50                            111 
  DEL PEAK 42(21Q11.2) MUTATED DEL PEAK 42(21Q11.2) WILD-TYPE 
                            50                            111 
[1] "Del Peak 43(22q13.31) mutation analysis"
[1] 3
  DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE 
                             49                             112 
  DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE 
                             49                             112 
[1] "Del Peak 44(Xp22.2) mutation analysis"
[1] 3
  DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE 
                           27                           134 
  DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE 
                           27                           134 
[1] "Del Peak 45(Xp21.1) mutation analysis"
[1] 3
  DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE 
                           27                           134 
  DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE 
                           27                           134 
[1] "Del Peak 46(Xq21.33) mutation analysis"
[1] 3
  DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE 
                            21                            140 
  DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE 
                            21                            140 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "HISTOLOGICALTYPE"                      
[10] "PATHOLOGICSPREAD(PT)"                  
[11] "PATHOLOGICSPREAD(PN)"                  
[12] "PATHOLOGICSPREAD(M)"                   
[13] "TUMORSTAGE"                            
[14] "RADIATIONS.RADIATION.REGIMENINDICATION"
[15] "BATCHNUMBER"                           

Input Data has 15 rows and 161 columns.

[1] "Batch" "15"   
[1] "Last Follow UP"
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-4183 TCGA-BR-4184 TCGA-BR-4187 TCGA-BR-4188 
         171            3           NA           NA           NA           NA 
TCGA-BR-4191 TCGA-BR-4201 TCGA-BR-4253 TCGA-BR-4255 TCGA-BR-4256 TCGA-BR-4257 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4267 TCGA-BR-4279 TCGA-BR-4280 TCGA-BR-4292 TCGA-BR-4294 TCGA-BR-4357 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4361 TCGA-BR-4362 TCGA-BR-4363 TCGA-BR-4366 TCGA-BR-4367 TCGA-BR-4368 
          NA           NA           NA           NA           NA           NA 
TCGA-BR-4369 TCGA-BR-4370 TCGA-BR-4371 TCGA-BR-6452 TCGA-BR-6453 TCGA-BR-6454 
          NA           NA           NA           29           NA           NA 
TCGA-BR-6455 TCGA-BR-6456 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 
          43           NA           41           41           26           25 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
          19           19           52           66           30           37 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
          20           34           23           20            8           37 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
          45           14           38            4           32           25 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
          21            5          138           30           29           21 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
           5           33           25           40           21           29 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
          15           14           22            8           13            8 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 
          36           47           45           23           25           21 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CD-5804 TCGA-CG-4300 
          11           15            9            2           NA          609 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
          92          822          485           31         1611          245 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4442 TCGA-CG-4443 TCGA-CG-4444 
        1644          122          426           NA          912         1431 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
         580          366          669           31          273          576 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4475 TCGA-CG-4476 TCGA-CG-4477 
         215          365           31           NA           NA           31 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
          31          211           31           31           30          182 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
          29         2131          366          457          881          944 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
        1980          122         1674          641          243          263 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
         109          138          298          476          293          249 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
         210           21          181          201          126           51 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
         111          143          123           89          130           19 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
         237          199           61           NA           12            6 
TCGA-FP-7916 TCGA-FP-7998 TCGA-HF-7131 TCGA-HF-7132 TCGA-HF-7133 TCGA-HF-7134 
          92          109           NA           NA           NA           NA 
TCGA-HF-7136 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
          NA           NA          209          108           77 
Variable 1:'AGE':	nDistinctValues=44,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=16,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=88,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=11,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'HISTOLOGICAL.TYPE':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'PATHOLOGY.T':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'PATHOLOGY.N':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'TUMOR.STAGE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'BATCH.NUMBER':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "GENDER"                                
[3] "HISTOLOGICAL.TYPE"                     
[4] "PATHOLOGY.T"                           
[5] "PATHOLOGY.N"                           
[6] "PATHOLOGICSPREAD(M)"                   
[7] "TUMOR.STAGE"                           
[8] "RADIATIONS.RADIATION.REGIMENINDICATION"
[1] "TUMOR.?STAGE" "7"           
[1] "stage2"
vv
 1  2  3  4 
25 43 48 29 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "4"          
[1] "PATHOLOGY.N" "5"          
Output Data has 161 columns, 1 survival variables, and 8 non-survival variables.
AGE, nv=44, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=7, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
 6 53 59 33 
[1] "table(vv)"
vv
T1 T2 T3 T4 
 6 53 59 33 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
T1 T2 T3 T4 
 6 53 59 33 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


T1 T2 T3 T4 
 6 53 59 33 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 N3 
50 57 24 19 
[1] "table(vv)"
vv
N0 N1 N2 N3 
50 57 24 19 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
N0 N1 N2 N3 
50 57 24 19 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


N0 N1 N2 N3 
50 57 24 19 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE$',vnm)"
vv
  I  II III  IV 
 25  43  48  29 
[1] "table(vv)"
vv
  I  II III  IV 
 25  43  48  29 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 25  43  48  29 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 25  43  48  29 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p36.22) mutation analysis
D1V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  1(1P36.22) MUTATED   16  1
  AMP PEAK  1(1P36.22) WILD-TYPE 92 15
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                            17                            107 
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                             1                             15 
$`AMP PEAK  1(1P36.22) MUTATED`
TCGA-BR-7197 TCGA-BR-7901 TCGA-CD-5799 TCGA-CD-5802 TCGA-CG-4443 TCGA-CG-4444 
        1.48         0.95         0.69         0.30        29.98        47.05 
TCGA-CG-4449 TCGA-CG-5718 TCGA-CG-5732 TCGA-D7-6521 TCGA-D7-6527 TCGA-D7-6528 
       19.07         1.02        55.04         8.19         4.14         1.68 
TCGA-FP-7829 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        0.20        26.43         6.87         3.55         2.53 

$`AMP PEAK  1(1P36.22) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.85         0.82         0.62         0.62         1.71         2.17 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 
        0.99         1.22         0.66         1.12         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 
        0.26         1.22         0.46         1.25         0.13         1.05 
TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 
        0.82         0.69         0.16         4.54         0.99         0.69 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.16         1.08         0.82         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.49         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5800 
        1.18         1.55         1.48         0.76         0.82         0.36 
TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 
        0.49         0.07        20.02         3.02        27.02        15.95 
TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 
        1.02        52.96         8.05        54.05         4.01        14.01 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       12.03        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        0.99         5.98         0.95        70.06        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 
       28.96        31.04        65.10         4.01        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6815 TCGA-D7-6817 
        6.90         0.69         5.95         6.61         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 
        4.04         2.93         4.27         0.62         7.79         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 
        2.01        72.23         0.39         3.02         3.58 

  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                          0.20                           0.07 
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                         55.04                          72.23 
  AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE 
                          3.55                           1.35 
[1] "0.2 - 55.0 (3.5)" "0.1 - 72.2 (1.4)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK  1(1P36.22) MUTATED" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK  1(1P36.22) WILD-TYPE"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK  1(1P36.22) WILD-TYPE" "AMP PEAK  1(1P36.22) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK  1(1P36.22) MUTATED"   "AMP PEAK  1(1P36.22) MUTATED" 
[1] "hr=" "4"  
D1V2, continuous
D1V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  1(1P36.22) MUTATED      4   18
  AMP PEAK  1(1P36.22) WILD-TYPE   61   78
        clus
vv       AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  FEMALE                            4                             61
  MALE                             18                             78
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  1(1P36.22) MUTATED                                       4
  AMP PEAK  1(1P36.22) WILD-TYPE                                    15
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  1(1P36.22) MUTATED                                                        7
  AMP PEAK  1(1P36.22) WILD-TYPE                                                     72
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK  1(1P36.22) MUTATED                                           1
  AMP PEAK  1(1P36.22) WILD-TYPE                                         0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  1(1P36.22) MUTATED                                                   2
  AMP PEAK  1(1P36.22) WILD-TYPE                                                 7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  1(1P36.22) MUTATED                                                    1
  AMP PEAK  1(1P36.22) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  1(1P36.22) MUTATED                                                  1
  AMP PEAK  1(1P36.22) WILD-TYPE                                                9
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  1(1P36.22) MUTATED                                                                        4
  AMP PEAK  1(1P36.22) WILD-TYPE                                                                     31
D1V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK  1(1P36.22) MUTATED    1  9 10  1
  AMP PEAK  1(1P36.22) WILD-TYPE  5 44 49 32
D1V5, multiclass
    clus
vv   AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  T1                            1                              5
  T2                            9                             44
  T3                           10                             49
  T4                            1                             32
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK  1(1P36.22) MUTATED    5 10  3  3
  AMP PEAK  1(1P36.22) WILD-TYPE 45 47 21 16
D1V6, multiclass
    clus
vv   AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  N0                            5                             45
  N1                           10                             47
  N2                            3                             21
  N3                            3                             16
                                vv
clus                              M0  M1  MX
  AMP PEAK  1(1P36.22) MUTATED    18   1   3
  AMP PEAK  1(1P36.22) WILD-TYPE 114  17   8
D1V7, multiclass
    clus
vv   AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  M0                           18                            114
  M1                            1                             17
  MX                            3                              8
                                vv
clus                              I II III IV
  AMP PEAK  1(1P36.22) MUTATED    3  7   9  1
  AMP PEAK  1(1P36.22) WILD-TYPE 22 36  39 28
D1V8, multiclass
     clus
vv    AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  I                              3                             22
  II                             7                             36
  III                            9                             39
  IV                             1                             28
D1V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  1(1P36.22) MUTATED      1   21
  AMP PEAK  1(1P36.22) WILD-TYPE    4  135
     clus
vv    AMP PEAK  1(1P36.22) MUTATED AMP PEAK  1(1P36.22) WILD-TYPE
  NO                             1                              4
  YES                           21                            135

Clustering(2) Variable = Amp Peak  2(1q21.3) mutation analysis
D2V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  2(1Q21.3) MUTATED   27  6
  AMP PEAK  2(1Q21.3) WILD-TYPE 81 10
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                           33                            91 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                            6                            10 
$`AMP PEAK  2(1Q21.3) MUTATED`
TCGA-BR-6458 TCGA-BR-6705 TCGA-BR-7197 TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7901 
        1.35         1.71         1.48         0.69         4.54         0.95 
TCGA-CD-5800 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4444 TCGA-CG-4460 TCGA-CG-4466 
        0.36        52.96        54.05        47.05        21.99        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5718 TCGA-CG-5724 TCGA-CG-5730 TCGA-D7-5579 
        7.07        12.00         1.02        12.03         4.01         4.54 
TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6817 
       15.65         8.19         6.61         4.14         1.68         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6875 TCGA-FP-7735 
        4.04         2.93         4.27         0.62        72.23         0.39 
TCGA-FP-7916 TCGA-HJ-7597 TCGA-IN-7808 
        3.02        26.43         3.55 

$`AMP PEAK  2(1Q21.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         0.62         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7722 
        0.46         1.25         0.13         1.05         0.82         0.16 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.99         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 
        0.82         0.69         0.49         0.30         0.07        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4440 
        3.02        27.02        15.95         1.02         8.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 
       14.01        29.98        19.07        12.03         1.02         8.98 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         1.02         6.94         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
        5.98         0.95        70.06        15.02        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
       65.10        55.04        21.07         7.99         8.65         3.58 
TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6815 
        9.80         9.63         6.90         0.69         5.95         3.65 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7829 TCGA-FP-7998 TCGA-IN-7806 
        7.79         6.54         2.01         0.20         3.58         6.87 
TCGA-IP-7968 
        2.53 

  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                         0.36                          0.07 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                        72.23                         70.06 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                         4.27                          1.12 
[1] "0.4 - 72.2 (4.3)" "0.1 - 70.1 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  2(1Q21.3) MUTATED"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  2(1Q21.3) WILD-TYPE" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  2(1Q21.3) WILD-TYPE"   "AMP PEAK  2(1Q21.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  2(1Q21.3) MUTATED" "AMP PEAK  2(1Q21.3) WILD-TYPE" 
[1] "hr=" "1.2"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q21.3) MUTATED     20   30
  AMP PEAK  2(1Q21.3) WILD-TYPE   45   66
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  FEMALE                          20                            45
  MALE                            30                            66
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  2(1Q21.3) MUTATED                                       6
  AMP PEAK  2(1Q21.3) WILD-TYPE                                    13
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  2(1Q21.3) MUTATED                                                       22
  AMP PEAK  2(1Q21.3) WILD-TYPE                                                     57
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK  2(1Q21.3) MUTATED                                           1
  AMP PEAK  2(1Q21.3) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  2(1Q21.3) MUTATED                                                   2
  AMP PEAK  2(1Q21.3) WILD-TYPE                                                 7
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  2(1Q21.3) MUTATED                                                    2
  AMP PEAK  2(1Q21.3) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  2(1Q21.3) MUTATED                                                  6
  AMP PEAK  2(1Q21.3) WILD-TYPE                                                4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  2(1Q21.3) MUTATED                                                                        8
  AMP PEAK  2(1Q21.3) WILD-TYPE                                                                     27
D2V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  2(1Q21.3) MUTATED    2 20 19  6
  AMP PEAK  2(1Q21.3) WILD-TYPE  4 33 40 27
D2V5, multiclass
    clus
vv   AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  T1                           2                             4
  T2                          20                            33
  T3                          19                            40
  T4                           6                            27
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK  2(1Q21.3) MUTATED   12 16  7  8
  AMP PEAK  2(1Q21.3) WILD-TYPE 38 41 17 11
D2V6, multiclass
    clus
vv   AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  N0                          12                            38
  N1                          16                            41
  N2                           7                            17
  N3                           8                            11
                               vv
clus                            M0 M1 MX
  AMP PEAK  2(1Q21.3) MUTATED   40  5  5
  AMP PEAK  2(1Q21.3) WILD-TYPE 92 13  6
D2V7, multiclass
    clus
vv   AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  M0                          40                            92
  M1                           5                            13
  MX                           5                             6
                               vv
clus                             I II III IV
  AMP PEAK  2(1Q21.3) MUTATED    9 11  13 10
  AMP PEAK  2(1Q21.3) WILD-TYPE 16 32  35 19
D2V8, multiclass
     clus
vv    AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  I                             9                            16
  II                           11                            32
  III                          13                            35
  IV                           10                            19
D2V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q21.3) MUTATED      4   46
  AMP PEAK  2(1Q21.3) WILD-TYPE    1  110
     clus
vv    AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  NO                            4                             1
  YES                          46                           110

Clustering(3) Variable = Amp Peak  3(1q42.3) mutation analysis
D3V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  3(1Q42.3) MUTATED   29  5
  AMP PEAK  3(1Q42.3) WILD-TYPE 79 11
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           34                            90 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                            5                            11 
$`AMP PEAK  3(1Q42.3) MUTATED`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7716 
        1.35         0.62         1.71         1.48         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7723 TCGA-CD-5800 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4449 
        0.69         4.54         0.36        52.96        54.05        19.07 
TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5719 TCGA-CG-5730 
       21.99        18.94         7.07        12.00         1.02         4.01 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6526 TCGA-D7-6527 
        3.58         4.54         9.63         8.19         6.61         4.14 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6875 
        4.70         4.04         2.93         4.27         0.62        72.23 
TCGA-FP-7735 TCGA-FP-7916 TCGA-HJ-7597 TCGA-IN-7808 
        0.39         3.02        26.43         3.55 

$`AMP PEAK  3(1Q42.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.82         0.62         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 
        1.12         0.76         0.66         0.26         1.22         0.46 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
        1.25         0.13         0.16         0.99         0.95         0.69 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.16         1.08         0.82         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.49         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 
        1.18         1.55         1.48         0.76         0.82         0.69 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
        0.49         0.30         0.07        20.02         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       15.95         1.02         8.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4474 TCGA-CG-4477 
       47.05        12.03         1.02         8.98         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        1.02         6.94         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
       70.06        12.03        15.02        28.96        31.04        65.10 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-6518 TCGA-D7-6519 
       55.04        21.07         7.99         8.65         9.80        15.65 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6528 TCGA-D7-6815 TCGA-EQ-8122 
        6.90         0.69         5.95         1.68         3.65         7.79 
TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7829 TCGA-FP-7998 TCGA-IN-7806 TCGA-IP-7968 
        6.54         2.01         0.20         3.58         6.87         2.53 

  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                         0.36                          0.07 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                        72.23                         70.06 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                         4.09                          1.20 
[1] "0.4 - 72.2 (4.1)" "0.1 - 70.1 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  3(1Q42.3) MUTATED"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  3(1Q42.3) WILD-TYPE" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  3(1Q42.3) WILD-TYPE"   "AMP PEAK  3(1Q42.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  3(1Q42.3) MUTATED" "AMP PEAK  3(1Q42.3) WILD-TYPE" 
[1] "hr=" "1.4"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q42.3) MUTATED     16   31
  AMP PEAK  3(1Q42.3) WILD-TYPE   49   65
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  FEMALE                          16                            49
  MALE                            31                            65
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  3(1Q42.3) MUTATED                                       4
  AMP PEAK  3(1Q42.3) WILD-TYPE                                    15
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  3(1Q42.3) MUTATED                                                       22
  AMP PEAK  3(1Q42.3) WILD-TYPE                                                     57
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK  3(1Q42.3) MUTATED                                           1
  AMP PEAK  3(1Q42.3) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  3(1Q42.3) MUTATED                                                   2
  AMP PEAK  3(1Q42.3) WILD-TYPE                                                 7
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  3(1Q42.3) MUTATED                                                    2
  AMP PEAK  3(1Q42.3) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  3(1Q42.3) MUTATED                                                  7
  AMP PEAK  3(1Q42.3) WILD-TYPE                                                3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  3(1Q42.3) MUTATED                                                                        8
  AMP PEAK  3(1Q42.3) WILD-TYPE                                                                     27
D3V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  3(1Q42.3) MUTATED    1 18 17  8
  AMP PEAK  3(1Q42.3) WILD-TYPE  5 35 42 25
D3V5, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  T1                           1                             5
  T2                          18                            35
  T3                          17                            42
  T4                           8                            25
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK  3(1Q42.3) MUTATED   15 12  8  6
  AMP PEAK  3(1Q42.3) WILD-TYPE 35 45 16 13
D3V6, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  N0                          15                            35
  N1                          12                            45
  N2                           8                            16
  N3                           6                            13
                               vv
clus                            M0 M1 MX
  AMP PEAK  3(1Q42.3) MUTATED   37  5  5
  AMP PEAK  3(1Q42.3) WILD-TYPE 95 13  6
D3V7, multiclass
    clus
vv   AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  M0                          37                            95
  M1                           5                            13
  MX                           5                             6
                               vv
clus                             I II III IV
  AMP PEAK  3(1Q42.3) MUTATED    9 12  10 10
  AMP PEAK  3(1Q42.3) WILD-TYPE 16 31  38 19
D3V8, multiclass
     clus
vv    AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  I                             9                            16
  II                           12                            31
  III                          10                            38
  IV                           10                            19
D3V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q42.3) MUTATED      3   44
  AMP PEAK  3(1Q42.3) WILD-TYPE    2  112
     clus
vv    AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  NO                            3                             2
  YES                          44                           112

Clustering(4) Variable = Amp Peak  4(3q26.31) mutation analysis
D4V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  4(3Q26.31) MUTATED   29  4
  AMP PEAK  4(3Q26.31) WILD-TYPE 79 12
  AMP PEAK  4(3Q26.31) MUTATED AMP PEAK  4(3Q26.31) WILD-TYPE 
                            33                             91 
  AMP PEAK  4(3Q26.31) MUTATED AMP PEAK  4(3Q26.31) WILD-TYPE 
                             4                             12 
$`AMP PEAK  4(3Q26.31) MUTATED`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6565 TCGA-BR-6706 TCGA-BR-6801 
        5.62         0.10         0.95         0.62         2.17         1.12 
TCGA-BR-6802 TCGA-BR-7196 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7901 TCGA-CD-5799 
        0.76         1.22         0.16         4.54         0.95         0.69 
TCGA-CD-5801 TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4444 
        0.49         3.02        15.95        52.96         8.05        47.05 
TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4472 TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5725 
       12.03         1.02        12.00         1.02        12.03        15.02 
TCGA-D7-6521 TCGA-D7-6527 TCGA-D7-6815 TCGA-EQ-5647 TCGA-FP-7735 TCGA-FP-7829 
        8.19         4.14         3.65         0.62         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 
        3.02         3.58        26.43 

$`AMP PEAK  4(3Q26.31) WILD-TYPE`
TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6566 
        1.41         1.35         1.35         0.85         0.82         0.62 
TCGA-BR-6705 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6803 TCGA-BR-6852 
        1.71         0.99         1.22         0.66         0.66         0.26 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.48         0.46         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        0.69         0.99         0.69         0.16         1.08         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        1.32         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.26         0.43         0.26         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 
        0.76         0.82         0.36         0.30         0.07        20.02 
TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       27.02         1.02        54.05         4.01        14.01        29.98 
TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4474 
       19.07        21.99         8.98        18.94         7.07         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 
        1.02         1.02         6.94         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
        0.95        70.06        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
        9.80        15.65         9.63         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        6.61         1.68         4.70         4.04         2.93         4.27 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-IN-7806 TCGA-IN-7808 
        7.79         6.54         2.01        72.23         6.87         3.55 
TCGA-IP-7968 
        2.53 

  AMP PEAK  4(3Q26.31) MUTATED AMP PEAK  4(3Q26.31) WILD-TYPE 
                          0.10                           0.07 
  AMP PEAK  4(3Q26.31) MUTATED AMP PEAK  4(3Q26.31) WILD-TYPE 
                         52.96                          72.23 
  AMP PEAK  4(3Q26.31) MUTATED AMP PEAK  4(3Q26.31) WILD-TYPE 
                          3.02                           1.48 
[1] "0.1 - 53.0 (3.0)" "0.1 - 72.2 (1.5)"
                    TCGA-B7-5816                     TCGA-B7-5818 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK  4(3Q26.31) WILD-TYPE"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "AMP PEAK  4(3Q26.31) MUTATED"   "AMP PEAK  4(3Q26.31) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK  4(3Q26.31) MUTATED" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK  4(3Q26.31) WILD-TYPE" "AMP PEAK  4(3Q26.31) WILD-TYPE" 
[1] "hr=" "1"  
D4V2, continuous
D4V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  4(3Q26.31) MUTATED     13   35
  AMP PEAK  4(3Q26.31) WILD-TYPE   52   61
        clus
vv       AMP PEAK  4(3Q26.31) MUTATED AMP PEAK  4(3Q26.31) WILD-TYPE
  FEMALE                           13                             52
  MALE                             35                             61
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  4(3Q26.31) MUTATED                                       7
  AMP PEAK  4(3Q26.31) WILD-TYPE                                    12
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  4(3Q26.31) MUTATED                                                       28
  AMP PEAK  4(3Q26.31) WILD-TYPE                                                     51
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK  4(3Q26.31) MUTATED                                           1
  AMP PEAK  4(3Q26.31) WILD-TYPE                                         0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  4(3Q26.31) MUTATED                                                   2
  AMP PEAK  4(3Q26.31) WILD-TYPE                                                 7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  4(3Q26.31) MUTATED                                                    1
  AMP PEAK  4(3Q26.31) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  4(3Q26.31) MUTATED                                                  1
  AMP PEAK  4(3Q26.31) WILD-TYPE                                                9
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  4(3Q26.31) MUTATED                                                                        4
  AMP PEAK  4(3Q26.31) WILD-TYPE                                                                     31
D4V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK  4(3Q26.31) MUTATED    0 14 20 10
  AMP PEAK  4(3Q26.31) WILD-TYPE  6 39 39 23
D4V5, multiclass
    clus
vv   AMP PEAK  4(3Q26.31) MUTATED AMP PEAK  4(3Q26.31) WILD-TYPE
  T1                            0                              6
  T2                           14                             39
  T3                           20                             39
  T4                           10                             23
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK  4(3Q26.31) MUTATED   12 21  6  6
  AMP PEAK  4(3Q26.31) WILD-TYPE 38 36 18 13
D4V6, multiclass
    clus
vv   AMP PEAK  4(3Q26.31) MUTATED AMP PEAK  4(3Q26.31) WILD-TYPE
  N0                           12                             38
  N1                           21                             36
  N2                            6                             18
  N3                            6                             13
                                vv
clus                             M0 M1 MX
  AMP PEAK  4(3Q26.31) MUTATED   37  6  5
  AMP PEAK  4(3Q26.31) WILD-TYPE 95 12  6
D4V7, multiclass
    clus
vv   AMP PEAK  4(3Q26.31) MUTATED AMP PEAK  4(3Q26.31) WILD-TYPE
  M0                           37                             95
  M1                            6                             12
  MX                            5                              6
                                vv
clus                              I II III IV
  AMP PEAK  4(3Q26.31) MUTATED    6 11  18  8
  AMP PEAK  4(3Q26.31) WILD-TYPE 19 32  30 21
D4V8, multiclass
     clus
vv    AMP PEAK  4(3Q26.31) MUTATED AMP PEAK  4(3Q26.31) WILD-TYPE
  I                              6                             19
  II                            11                             32
  III                           18                             30
  IV                             8                             21
D4V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  4(3Q26.31) MUTATED      1   47
  AMP PEAK  4(3Q26.31) WILD-TYPE    4  109
     clus
vv    AMP PEAK  4(3Q26.31) MUTATED AMP PEAK  4(3Q26.31) WILD-TYPE
  NO                             1                              4
  YES                           47                            109

Clustering(5) Variable = Amp Peak  5(5p13.1) mutation analysis
D5V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  5(5P13.1) MUTATED   27  6
  AMP PEAK  5(5P13.1) WILD-TYPE 81 10
  AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE 
                           33                            91 
  AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE 
                            6                            10 
$`AMP PEAK  5(5P13.1) MUTATED`
TCGA-BR-6458 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        1.35         1.48         1.25         1.05         0.82         0.69 
TCGA-BR-7901 TCGA-CD-5801 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4444 TCGA-CG-4455 
        0.95         0.49        52.96        54.05        47.05        12.03 
TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5718 TCGA-CG-5722 
       21.99        18.94         7.07        12.00         1.02         0.95 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5730 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       12.03        15.02         4.01         3.58         4.54         9.80 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6875 
        4.14         1.68         4.04         2.93         0.62        72.23 
TCGA-FP-7735 TCGA-FP-7829 TCGA-IN-7808 
        0.39         0.20         3.55 

$`AMP PEAK  5(5P13.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        1.22         0.46         0.13         0.16         4.54         0.99 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.69         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 
        0.26         1.18         1.55         1.48         0.76         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 
        0.69         0.36         0.30         0.07        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4441 
       27.02        15.95         1.02         8.05         4.01        14.01 
TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4474 TCGA-CG-4477 
       29.98        19.07         1.02         8.98         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5723 
        1.02         6.94         1.02         0.99         5.98        70.06 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       28.96        31.04        65.10        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        8.65        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6822 TCGA-EQ-8122 
        5.95         6.61         3.65         4.70         4.27         7.79 
TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7806 
        6.54         2.01         3.02         3.58        26.43         6.87 
TCGA-IP-7968 
        2.53 

  AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE 
                         0.20                          0.07 
  AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE 
                        72.23                         70.06 
  AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE 
                         3.58                          1.32 
[1] "0.2 - 72.2 (3.6)" "0.1 - 70.1 (1.3)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  5(5P13.1) WILD-TYPE"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  5(5P13.1) MUTATED"   "AMP PEAK  5(5P13.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK  5(5P13.1) WILD-TYPE" "AMP PEAK  5(5P13.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  5(5P13.1) MUTATED" "AMP PEAK  5(5P13.1) WILD-TYPE" 
[1] "hr=" "1.1"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(5P13.1) MUTATED     12   32
  AMP PEAK  5(5P13.1) WILD-TYPE   53   64
        clus
vv       AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE
  FEMALE                          12                            53
  MALE                            32                            64
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  5(5P13.1) MUTATED                                       5
  AMP PEAK  5(5P13.1) WILD-TYPE                                    14
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  5(5P13.1) MUTATED                                                       18
  AMP PEAK  5(5P13.1) WILD-TYPE                                                     61
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK  5(5P13.1) MUTATED                                           0
  AMP PEAK  5(5P13.1) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  5(5P13.1) MUTATED                                                   4
  AMP PEAK  5(5P13.1) WILD-TYPE                                                 5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  5(5P13.1) MUTATED                                                    1
  AMP PEAK  5(5P13.1) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  5(5P13.1) MUTATED                                                  4
  AMP PEAK  5(5P13.1) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  5(5P13.1) MUTATED                                                                        9
  AMP PEAK  5(5P13.1) WILD-TYPE                                                                     26
D5V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  5(5P13.1) MUTATED    0 16 18  7
  AMP PEAK  5(5P13.1) WILD-TYPE  6 37 41 26
D5V5, multiclass
    clus
vv   AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE
  T1                           0                             6
  T2                          16                            37
  T3                          18                            41
  T4                           7                            26
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK  5(5P13.1) MUTATED   10 18  5  7
  AMP PEAK  5(5P13.1) WILD-TYPE 40 39 19 12
D5V6, multiclass
    clus
vv   AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE
  N0                          10                            40
  N1                          18                            39
  N2                           5                            19
  N3                           7                            12
                               vv
clus                            M0 M1 MX
  AMP PEAK  5(5P13.1) MUTATED   36  6  2
  AMP PEAK  5(5P13.1) WILD-TYPE 96 12  9
D5V7, multiclass
    clus
vv   AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE
  M0                          36                            96
  M1                           6                            12
  MX                           2                             9
                               vv
clus                             I II III IV
  AMP PEAK  5(5P13.1) MUTATED    6 14   7 12
  AMP PEAK  5(5P13.1) WILD-TYPE 19 29  41 17
D5V8, multiclass
     clus
vv    AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE
  I                             6                            19
  II                           14                            29
  III                           7                            41
  IV                           12                            17
D5V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(5P13.1) MUTATED      3   41
  AMP PEAK  5(5P13.1) WILD-TYPE    2  115
     clus
vv    AMP PEAK  5(5P13.1) MUTATED AMP PEAK  5(5P13.1) WILD-TYPE
  NO                            3                             2
  YES                          41                           115

Clustering(6) Variable = Amp Peak  6(6p21.1) mutation analysis
D6V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  6(6P21.1) MUTATED   29  0
  AMP PEAK  6(6P21.1) WILD-TYPE 79 16
  AMP PEAK  6(6P21.1) MUTATED AMP PEAK  6(6P21.1) WILD-TYPE 
                           29                            95 
  AMP PEAK  6(6P21.1) MUTATED AMP PEAK  6(6P21.1) WILD-TYPE 
                            0                            16 
$`AMP PEAK  6(6P21.1) MUTATED`
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7715 
        1.35         1.35         0.62         1.48         1.25         1.05 
TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7901 TCGA-CD-5799 TCGA-CG-4436 TCGA-CG-4438 
        0.69         4.54         0.95         0.69        52.96        54.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-5718 TCGA-CG-5727 TCGA-CG-5730 
       19.07        12.03        18.94         1.02        31.04         4.01 
TCGA-CG-5732 TCGA-D7-6518 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6818 
       55.04         9.80         4.14         1.68         3.65         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-FP-7735 TCGA-FP-7829 TCGA-IP-7968 
        2.93         4.27         0.39         0.20         2.53 

$`AMP PEAK  6(6P21.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.10         0.95         1.41         0.85         0.82 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 
        1.12         0.76         0.66         0.26         1.22         0.46 
TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 
        0.13         0.82         0.16         0.99         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 
        1.55         1.48         0.76         0.82         0.36         0.49 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 
        0.30         0.07        20.02         3.02        27.02        15.95 
TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        1.02         8.05         4.01        14.01        29.98        47.05 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
       21.99         1.02         8.98         7.07        12.00         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         1.02         6.94         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5728 
        0.95        70.06        12.03        15.02        28.96        65.10 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6519 
       21.07         7.99         8.65         3.58         4.54        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6817 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        4.70         0.62         7.79         6.54         2.01        72.23 
TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
        3.02         3.58        26.43         6.87         3.55 

  AMP PEAK  6(6P21.1) MUTATED AMP PEAK  6(6P21.1) WILD-TYPE 
                         0.20                          0.07 
  AMP PEAK  6(6P21.1) MUTATED AMP PEAK  6(6P21.1) WILD-TYPE 
                        55.04                         72.23 
  AMP PEAK  6(6P21.1) MUTATED AMP PEAK  6(6P21.1) WILD-TYPE 
                         2.93                          1.32 
[1] "0.2 - 55.0 (2.9)" "0.1 - 72.2 (1.3)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  6(6P21.1) MUTATED" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  6(6P21.1) MUTATED"   "AMP PEAK  6(6P21.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK  6(6P21.1) WILD-TYPE" "AMP PEAK  6(6P21.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK  6(6P21.1) WILD-TYPE"   "AMP PEAK  6(6P21.1) MUTATED" 
[1] "hr="     "3.2e+08"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(6P21.1) MUTATED     14   31
  AMP PEAK  6(6P21.1) WILD-TYPE   51   65
        clus
vv       AMP PEAK  6(6P21.1) MUTATED AMP PEAK  6(6P21.1) WILD-TYPE
  FEMALE                          14                            51
  MALE                            31                            65
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  6(6P21.1) MUTATED                                       2
  AMP PEAK  6(6P21.1) WILD-TYPE                                    17
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  6(6P21.1) MUTATED                                                       25
  AMP PEAK  6(6P21.1) WILD-TYPE                                                     54
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK  6(6P21.1) MUTATED                                           0
  AMP PEAK  6(6P21.1) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  6(6P21.1) MUTATED                                                   3
  AMP PEAK  6(6P21.1) WILD-TYPE                                                 6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  6(6P21.1) MUTATED                                                    1
  AMP PEAK  6(6P21.1) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  6(6P21.1) MUTATED                                                  4
  AMP PEAK  6(6P21.1) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  6(6P21.1) MUTATED                                                                       10
  AMP PEAK  6(6P21.1) WILD-TYPE                                                                     25
D6V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  6(6P21.1) MUTATED    1 18 17  3
  AMP PEAK  6(6P21.1) WILD-TYPE  5 35 42 30
D6V5, multiclass
    clus
vv   AMP PEAK  6(6P21.1) MUTATED AMP PEAK  6(6P21.1) WILD-TYPE
  T1                           1                             5
  T2                          18                            35
  T3                          17                            42
  T4                           3                            30
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK  6(6P21.1) MUTATED   15 19  5  3
  AMP PEAK  6(6P21.1) WILD-TYPE 35 38 19 16
D6V6, multiclass
    clus
vv   AMP PEAK  6(6P21.1) MUTATED AMP PEAK  6(6P21.1) WILD-TYPE
  N0                          15                            35
  N1                          19                            38
  N2                           5                            19
  N3                           3                            16
                               vv
clus                            M0 M1 MX
  AMP PEAK  6(6P21.1) MUTATED   40  1  4
  AMP PEAK  6(6P21.1) WILD-TYPE 92 17  7
D6V7, multiclass
    clus
vv   AMP PEAK  6(6P21.1) MUTATED AMP PEAK  6(6P21.1) WILD-TYPE
  M0                          40                            92
  M1                           1                            17
  MX                           4                             7
                               vv
clus                             I II III IV
  AMP PEAK  6(6P21.1) MUTATED    8 16   8  7
  AMP PEAK  6(6P21.1) WILD-TYPE 17 27  40 22
D6V8, multiclass
     clus
vv    AMP PEAK  6(6P21.1) MUTATED AMP PEAK  6(6P21.1) WILD-TYPE
  I                             8                            17
  II                           16                            27
  III                           8                            40
  IV                            7                            22
D6V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(6P21.1) MUTATED      3   42
  AMP PEAK  6(6P21.1) WILD-TYPE    2  114
     clus
vv    AMP PEAK  6(6P21.1) MUTATED AMP PEAK  6(6P21.1) WILD-TYPE
  NO                            3                             2
  YES                          42                           114

Clustering(7) Variable = Amp Peak  7(6q12) mutation analysis
D7V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  7(6Q12) MUTATED   18  1
  AMP PEAK  7(6Q12) WILD-TYPE 90 15
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                         19                         105 
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                          1                          15 
$`AMP PEAK  7(6Q12) MUTATED`
TCGA-BR-6458 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7723 TCGA-CD-5799 
        1.35         1.48         1.25         1.05         4.54         0.69 
TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4466 TCGA-CG-5719 TCGA-CG-5730 
       52.96        54.05         4.01        18.94         1.02         4.01 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-FP-7735 
        6.61         4.14         4.04         2.93         4.27         0.39 
TCGA-FP-7829 
        0.20 

$`AMP PEAK  7(6Q12) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 
        1.22         0.46         0.13         0.82         0.69         0.16 
TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        0.99         0.95         0.69         0.16         1.08         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        1.32         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.26         0.43         0.26         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.76         0.82         0.36         0.49         0.30         0.07 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 
       20.02         3.02        27.02        15.95         1.02         8.05 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 
        1.02         8.98         7.07        12.00         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        1.02         6.94         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
       70.06        12.03        15.02        28.96        31.04        65.10 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        9.80        15.65         9.63         8.19         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-EQ-5647 TCGA-EQ-8122 
        5.95         1.68         3.65         4.70         0.62         7.79 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 
        6.54         2.01        72.23         3.02         3.58        26.43 
TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        6.87         3.55         2.53 

  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                       0.20                        0.07 
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                      54.05                       72.23 
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                       4.01                        1.41 
[1] "0.2 - 54.0 (4.0)" "0.1 - 72.2 (1.4)"
                 TCGA-B7-5816                  TCGA-B7-5818 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CD-5800                  TCGA-CD-5801 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-4437                  TCGA-CG-4438 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-5732                  TCGA-CG-5733 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CD-5800                  TCGA-CD-5801 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-4437                  TCGA-CG-4438 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-5732                  TCGA-CG-5733 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CD-5800                  TCGA-CD-5801 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-4437                  TCGA-CG-4438 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-CG-5732                  TCGA-CG-5733 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
"AMP PEAK  7(6Q12) WILD-TYPE"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
  "AMP PEAK  7(6Q12) MUTATED" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
  "AMP PEAK  7(6Q12) MUTATED"   "AMP PEAK  7(6Q12) MUTATED" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"AMP PEAK  7(6Q12) WILD-TYPE" "AMP PEAK  7(6Q12) WILD-TYPE" 
[1] "hr=" "2.4"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  7(6Q12) MUTATED     13   20
  AMP PEAK  7(6Q12) WILD-TYPE   52   76
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  FEMALE                        13                          52
  MALE                          20                          76
                             vv
clus                          STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  7(6Q12) MUTATED                                       2
  AMP PEAK  7(6Q12) WILD-TYPE                                    17
                             vv
clus                          STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  7(6Q12) MUTATED                                                       17
  AMP PEAK  7(6Q12) WILD-TYPE                                                     62
                             vv
clus                          STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK  7(6Q12) MUTATED                                           0
  AMP PEAK  7(6Q12) WILD-TYPE                                         1
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  7(6Q12) MUTATED                                                   1
  AMP PEAK  7(6Q12) WILD-TYPE                                                 8
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  7(6Q12) MUTATED                                                    1
  AMP PEAK  7(6Q12) WILD-TYPE                                                  2
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  7(6Q12) MUTATED                                                  3
  AMP PEAK  7(6Q12) WILD-TYPE                                                7
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  7(6Q12) MUTATED                                                                        9
  AMP PEAK  7(6Q12) WILD-TYPE                                                                     26
D7V4, multiclass
                             vv
clus                          T1 T2 T3 T4
  AMP PEAK  7(6Q12) MUTATED    1 10 15  4
  AMP PEAK  7(6Q12) WILD-TYPE  5 43 44 29
D7V5, multiclass
    clus
vv   AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  T1                         1                           5
  T2                        10                          43
  T3                        15                          44
  T4                         4                          29
                             vv
clus                          N0 N1 N2 N3
  AMP PEAK  7(6Q12) MUTATED   10 13  4  3
  AMP PEAK  7(6Q12) WILD-TYPE 40 44 20 16
D7V6, multiclass
    clus
vv   AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  N0                        10                          40
  N1                        13                          44
  N2                         4                          20
  N3                         3                          16
                             vv
clus                           M0  M1  MX
  AMP PEAK  7(6Q12) MUTATED    27   3   3
  AMP PEAK  7(6Q12) WILD-TYPE 105  15   8
D7V7, multiclass
    clus
vv   AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  M0                        27                         105
  M1                         3                          15
  MX                         3                           8
                             vv
clus                           I II III IV
  AMP PEAK  7(6Q12) MUTATED    6  9   8  6
  AMP PEAK  7(6Q12) WILD-TYPE 19 34  40 23
D7V8, multiclass
     clus
vv    AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  I                           6                          19
  II                          9                          34
  III                         8                          40
  IV                          6                          23
D7V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  7(6Q12) MUTATED      2   31
  AMP PEAK  7(6Q12) WILD-TYPE    3  125
     clus
vv    AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  NO                          2                           3
  YES                        31                         125

Clustering(8) Variable = Amp Peak  8(7p11.2) mutation analysis
D8V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  8(7P11.2) MUTATED   41  9
  AMP PEAK  8(7P11.2) WILD-TYPE 67  7
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                           50                            74 
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                            9                             7 
$`AMP PEAK  8(7P11.2) MUTATED`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.10         1.35         0.62         0.62         1.71         2.17 
TCGA-BR-6801 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7717 
        1.12         1.48         0.46         1.25         1.05         0.69 
TCGA-BR-7901 TCGA-CD-5799 TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 
        0.95         0.69         0.49        20.02        27.02        15.95 
TCGA-CG-4436 TCGA-CG-4440 TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       52.96         4.01        21.99        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-5718 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5733 
        1.02         1.02        12.03        28.96        31.04        21.07 
TCGA-CG-5734 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 
        7.99         3.58         4.54         9.80         9.63         8.19 
TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-8122 
        6.61         1.68         3.65         2.93         4.27         7.79 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 
        6.54         2.01        72.23         0.39         0.20         3.02 
TCGA-HJ-7597 TCGA-IN-7808 
       26.43         3.55 

$`AMP PEAK  8(7P11.2) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.95         1.41         1.35         0.85         0.82 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        0.99         1.22         0.66         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        1.22         0.13         0.82         0.16         4.54         0.99 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.69         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 
        0.26         1.18         1.55         1.48         0.76         0.82 
TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4306 TCGA-CG-4437 
        0.36         0.30         0.07         3.02         1.02         8.05 
TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
       54.05        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 
        1.02         8.98         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5728 
        0.99         5.98         0.95        70.06        15.02        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5577 TCGA-D7-6519 TCGA-D7-6522 TCGA-D7-6524 
        4.01        55.04         8.65        15.65         6.90         0.69 
TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6817 TCGA-D7-6818 TCGA-EQ-5647 TCGA-FP-7998 
        5.95         4.14         4.70         4.04         0.62         3.58 
TCGA-IN-7806 TCGA-IP-7968 
        6.87         2.53 

  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                         0.10                          0.07 
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                        72.23                         70.06 
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                        3.615                         1.050 
[1] "0.1 - 72.2 (3.6)" "0.1 - 70.1 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-F1-6874                    TCGA-F1-6875 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-F1-6874                    TCGA-F1-6875 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  8(7P11.2) WILD-TYPE" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK  8(7P11.2) WILD-TYPE"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-F1-6874                    TCGA-F1-6875 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  8(7P11.2) MUTATED"   "AMP PEAK  8(7P11.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  8(7P11.2) MUTATED" "AMP PEAK  8(7P11.2) WILD-TYPE" 
[1] "hr=" "1.1"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  8(7P11.2) MUTATED     23   46
  AMP PEAK  8(7P11.2) WILD-TYPE   42   50
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  FEMALE                          23                            42
  MALE                            46                            50
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  8(7P11.2) MUTATED                                       8
  AMP PEAK  8(7P11.2) WILD-TYPE                                    11
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  8(7P11.2) MUTATED                                                       33
  AMP PEAK  8(7P11.2) WILD-TYPE                                                     46
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK  8(7P11.2) MUTATED                                           1
  AMP PEAK  8(7P11.2) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  8(7P11.2) MUTATED                                                   2
  AMP PEAK  8(7P11.2) WILD-TYPE                                                 7
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  8(7P11.2) MUTATED                                                    1
  AMP PEAK  8(7P11.2) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  8(7P11.2) MUTATED                                                  7
  AMP PEAK  8(7P11.2) WILD-TYPE                                                3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  8(7P11.2) MUTATED                                                                       15
  AMP PEAK  8(7P11.2) WILD-TYPE                                                                     20
D8V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  8(7P11.2) MUTATED    4 21 29  8
  AMP PEAK  8(7P11.2) WILD-TYPE  2 32 30 25
D8V5, multiclass
    clus
vv   AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  T1                           4                             2
  T2                          21                            32
  T3                          29                            30
  T4                           8                            25
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK  8(7P11.2) MUTATED   22 24 11  7
  AMP PEAK  8(7P11.2) WILD-TYPE 28 33 13 12
D8V6, multiclass
    clus
vv   AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  N0                          22                            28
  N1                          24                            33
  N2                          11                            13
  N3                           7                            12
                               vv
clus                            M0 M1 MX
  AMP PEAK  8(7P11.2) MUTATED   57  5  7
  AMP PEAK  8(7P11.2) WILD-TYPE 75 13  4
D8V7, multiclass
    clus
vv   AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  M0                          57                            75
  M1                           5                            13
  MX                           7                             4
                               vv
clus                             I II III IV
  AMP PEAK  8(7P11.2) MUTATED   15 17  20  9
  AMP PEAK  8(7P11.2) WILD-TYPE 10 26  28 20
D8V8, multiclass
     clus
vv    AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  I                            15                            10
  II                           17                            26
  III                          20                            28
  IV                            9                            20
D8V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  8(7P11.2) MUTATED      1   68
  AMP PEAK  8(7P11.2) WILD-TYPE    4   88
     clus
vv    AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  NO                            1                             4
  YES                          68                            88

Clustering(9) Variable = Amp Peak  9(7q21.2) mutation analysis
D9V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  9(7Q21.2) MUTATED   44  9
  AMP PEAK  9(7Q21.2) WILD-TYPE 64  7
  AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE 
                           53                            71 
  AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE 
                            9                             7 
$`AMP PEAK  9(7Q21.2) MUTATED`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 
        0.10         1.35         0.82         0.62         0.62         1.71 
TCGA-BR-6706 TCGA-BR-6801 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7715 
        2.17         1.12         1.48         0.46         1.25         1.05 
TCGA-CD-5799 TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 
        0.69         0.49        20.02         3.02        27.02        15.95 
TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4455 TCGA-CG-4466 
       52.96        54.05         4.01        14.01        12.03        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5718 TCGA-CG-5724 TCGA-CG-5725 
        7.07        12.00         1.02         1.02        12.03        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5733 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       28.96        31.04        21.07         3.58         4.54         9.80 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        9.63         8.19         5.95         6.61         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        3.65         4.70         7.79         6.54         2.01        72.23 
TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7808 
        0.39         0.20         3.58        26.43         3.55 

$`AMP PEAK  9(7Q21.2) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6707 
        5.62         0.95         1.41         1.35         0.85         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        1.22         0.66         0.76         0.66         0.26         1.22 
TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        0.13         0.82         0.69         0.16         4.54         0.99 
TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.95         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4306 TCGA-CG-4437 
        0.82         0.36         0.30         0.07         1.02         8.05 
TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       29.98        47.05        19.07        21.99         1.02         8.98 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         1.02         6.94         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 
        0.95        70.06        65.10         4.01        55.04         7.99 
TCGA-D7-5577 TCGA-D7-6519 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6818 TCGA-D7-6820 
        8.65        15.65         6.90         0.69         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-FP-7916 TCGA-IN-7806 TCGA-IP-7968 
        4.27         0.62         3.02         6.87         2.53 

  AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE 
                         0.10                          0.07 
  AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE 
                        72.23                         70.06 
  AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE 
                         4.14                          1.02 
[1] "0.1 - 72.2 (4.1)" "0.1 - 70.1 (1.0)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-F1-6874                    TCGA-F1-6875 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-F1-6874                    TCGA-F1-6875 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK  9(7Q21.2) WILD-TYPE" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-F1-6874                    TCGA-F1-6875 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK  9(7Q21.2) MUTATED"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK  9(7Q21.2) WILD-TYPE"   "AMP PEAK  9(7Q21.2) MUTATED" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK  9(7Q21.2) MUTATED" "AMP PEAK  9(7Q21.2) WILD-TYPE" 
[1] "hr=" "1.2"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(7Q21.2) MUTATED     23   48
  AMP PEAK  9(7Q21.2) WILD-TYPE   42   48
        clus
vv       AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE
  FEMALE                          23                            42
  MALE                            48                            48
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK  9(7Q21.2) MUTATED                                       9
  AMP PEAK  9(7Q21.2) WILD-TYPE                                    10
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  9(7Q21.2) MUTATED                                                       33
  AMP PEAK  9(7Q21.2) WILD-TYPE                                                     46
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK  9(7Q21.2) MUTATED                                           1
  AMP PEAK  9(7Q21.2) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK  9(7Q21.2) MUTATED                                                   3
  AMP PEAK  9(7Q21.2) WILD-TYPE                                                 6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK  9(7Q21.2) MUTATED                                                    2
  AMP PEAK  9(7Q21.2) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK  9(7Q21.2) MUTATED                                                  6
  AMP PEAK  9(7Q21.2) WILD-TYPE                                                4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK  9(7Q21.2) MUTATED                                                                       15
  AMP PEAK  9(7Q21.2) WILD-TYPE                                                                     20
D9V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK  9(7Q21.2) MUTATED    4 25 27  8
  AMP PEAK  9(7Q21.2) WILD-TYPE  2 28 32 25
D9V5, multiclass
    clus
vv   AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE
  T1                           4                             2
  T2                          25                            28
  T3                          27                            32
  T4                           8                            25
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK  9(7Q21.2) MUTATED   22 21 14  8
  AMP PEAK  9(7Q21.2) WILD-TYPE 28 36 10 11
D9V6, multiclass
    clus
vv   AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE
  N0                          22                            28
  N1                          21                            36
  N2                          14                            10
  N3                           8                            11
                               vv
clus                            M0 M1 MX
  AMP PEAK  9(7Q21.2) MUTATED   58  5  8
  AMP PEAK  9(7Q21.2) WILD-TYPE 74 13  3
D9V7, multiclass
    clus
vv   AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE
  M0                          58                            74
  M1                           5                            13
  MX                           8                             3
                               vv
clus                             I II III IV
  AMP PEAK  9(7Q21.2) MUTATED   15 18  20  9
  AMP PEAK  9(7Q21.2) WILD-TYPE 10 25  28 20
D9V8, multiclass
     clus
vv    AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE
  I                            15                            10
  II                           18                            25
  III                          20                            28
  IV                            9                            20
D9V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(7Q21.2) MUTATED      2   69
  AMP PEAK  9(7Q21.2) WILD-TYPE    3   87
     clus
vv    AMP PEAK  9(7Q21.2) MUTATED AMP PEAK  9(7Q21.2) WILD-TYPE
  NO                            2                             3
  YES                          69                            87

Clustering(10) Variable = Amp Peak 10(8p23.1) mutation analysis
D10V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 10(8P23.1) MUTATED   33  6
  AMP PEAK 10(8P23.1) WILD-TYPE 75 10
  AMP PEAK 10(8P23.1) MUTATED AMP PEAK 10(8P23.1) WILD-TYPE 
                           39                            85 
  AMP PEAK 10(8P23.1) MUTATED AMP PEAK 10(8P23.1) WILD-TYPE 
                            6                            10 
$`AMP PEAK 10(8P23.1) MUTATED`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6705 
        5.62         0.95         1.41         1.35         1.35         1.71 
TCGA-BR-6707 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7704 TCGA-BR-7707 
        0.99         0.76         0.66         0.26         1.25         0.13 
TCGA-BR-7717 TCGA-BR-7957 TCGA-CD-5799 TCGA-CD-5803 TCGA-CG-4305 TCGA-CG-4441 
        0.69         0.69         0.69         0.07        15.95        14.01 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       12.03        21.99         1.02        18.94         7.07        12.00 
TCGA-CG-5716 TCGA-CG-5722 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-5578 
        1.02         0.95        28.96        65.10        21.07         3.58 
TCGA-D7-5579 TCGA-D7-6524 TCGA-D7-6527 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.54         0.69         4.14         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-FP-7829 TCGA-HJ-7597 
        4.27         0.20        26.43 

$`AMP PEAK 10(8P23.1) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6706 
        0.10         0.85         0.82         0.62         0.62         2.17 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        1.22         0.66         1.12         1.22         1.48         0.46 
TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 
        1.05         0.82         0.16         4.54         0.99         0.95 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.16         1.08         0.82         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.49         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5800 
        1.18         1.55         1.48         0.76         0.82         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4306 
        0.49         0.30        20.02         3.02        27.02         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4444 
       52.96         8.05        54.05         4.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4465 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5718 
       19.07         8.98         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 
        1.02         0.99         5.98        70.06        12.03        15.02 
TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-6518 
       31.04         4.01        55.04         7.99         8.65         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6525 TCGA-D7-6526 
       15.65         9.63         8.19         6.90         5.95         6.61 
TCGA-D7-6528 TCGA-D7-6815 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 
        1.68         3.65         0.62         7.79         6.54         2.01 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-IN-7806 TCGA-IN-7808 
       72.23         0.39         3.02         3.58         6.87         3.55 
TCGA-IP-7968 
        2.53 

  AMP PEAK 10(8P23.1) MUTATED AMP PEAK 10(8P23.1) WILD-TYPE 
                         0.07                          0.10 
  AMP PEAK 10(8P23.1) MUTATED AMP PEAK 10(8P23.1) WILD-TYPE 
                        65.10                         72.23 
  AMP PEAK 10(8P23.1) MUTATED AMP PEAK 10(8P23.1) WILD-TYPE 
                         1.71                          1.48 
[1] "0.1 - 65.1 (1.7)" "0.1 - 72.2 (1.5)"
                   TCGA-B7-5816                    TCGA-B7-5818 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 10(8P23.1) MUTATED"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"AMP PEAK 10(8P23.1) WILD-TYPE"   "AMP PEAK 10(8P23.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 10(8P23.1) MUTATED" "AMP PEAK 10(8P23.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK 10(8P23.1) WILD-TYPE" "AMP PEAK 10(8P23.1) WILD-TYPE" 
[1] "hr=" "1.4"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(8P23.1) MUTATED     28   31
  AMP PEAK 10(8P23.1) WILD-TYPE   37   65
        clus
vv       AMP PEAK 10(8P23.1) MUTATED AMP PEAK 10(8P23.1) WILD-TYPE
  FEMALE                          28                            37
  MALE                            31                            65
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 10(8P23.1) MUTATED                                       5
  AMP PEAK 10(8P23.1) WILD-TYPE                                    14
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 10(8P23.1) MUTATED                                                       29
  AMP PEAK 10(8P23.1) WILD-TYPE                                                     50
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 10(8P23.1) MUTATED                                           1
  AMP PEAK 10(8P23.1) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 10(8P23.1) MUTATED                                                   4
  AMP PEAK 10(8P23.1) WILD-TYPE                                                 5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 10(8P23.1) MUTATED                                                    1
  AMP PEAK 10(8P23.1) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 10(8P23.1) MUTATED                                                  4
  AMP PEAK 10(8P23.1) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 10(8P23.1) MUTATED                                                                       13
  AMP PEAK 10(8P23.1) WILD-TYPE                                                                     22
D10V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 10(8P23.1) MUTATED    3 21 21  8
  AMP PEAK 10(8P23.1) WILD-TYPE  3 32 38 25
D10V5, multiclass
    clus
vv   AMP PEAK 10(8P23.1) MUTATED AMP PEAK 10(8P23.1) WILD-TYPE
  T1                           3                             3
  T2                          21                            32
  T3                          21                            38
  T4                           8                            25
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK 10(8P23.1) MUTATED   18 20  9  5
  AMP PEAK 10(8P23.1) WILD-TYPE 32 37 15 14
D10V6, multiclass
    clus
vv   AMP PEAK 10(8P23.1) MUTATED AMP PEAK 10(8P23.1) WILD-TYPE
  N0                          18                            32
  N1                          20                            37
  N2                           9                            15
  N3                           5                            14
                               vv
clus                            M0 M1 MX
  AMP PEAK 10(8P23.1) MUTATED   51  5  3
  AMP PEAK 10(8P23.1) WILD-TYPE 81 13  8
D10V7, multiclass
    clus
vv   AMP PEAK 10(8P23.1) MUTATED AMP PEAK 10(8P23.1) WILD-TYPE
  M0                          51                            81
  M1                           5                            13
  MX                           3                             8
                               vv
clus                             I II III IV
  AMP PEAK 10(8P23.1) MUTATED    9 18  13 10
  AMP PEAK 10(8P23.1) WILD-TYPE 16 25  35 19
D10V8, multiclass
     clus
vv    AMP PEAK 10(8P23.1) MUTATED AMP PEAK 10(8P23.1) WILD-TYPE
  I                             9                            16
  II                           18                            25
  III                          13                            35
  IV                           10                            19
D10V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(8P23.1) MUTATED      4   55
  AMP PEAK 10(8P23.1) WILD-TYPE    1  101
     clus
vv    AMP PEAK 10(8P23.1) MUTATED AMP PEAK 10(8P23.1) WILD-TYPE
  NO                            4                             1
  YES                          55                           101

Clustering(11) Variable = Amp Peak 11(8q24.21) mutation analysis
D11V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 11(8Q24.21) MUTATED   61 12
  AMP PEAK 11(8Q24.21) WILD-TYPE 47  4
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                            73                             51 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                            12                              4 
$`AMP PEAK 11(8Q24.21) MUTATED`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6565 TCGA-BR-6705 
        5.62         0.95         1.41         1.35         0.62         1.71 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        0.99         1.22         1.12         0.76         0.66         0.26 
TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        1.48         1.25         0.13         1.05         0.82         0.69 
TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-7957 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 
        4.54         0.95         0.69         0.36         0.30         0.07 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
       20.02         3.02        15.95        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5717 
       21.99         1.02        18.94         7.07        12.00         6.94 
TCGA-CG-5718 TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
        1.02         0.95        12.03        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5578 TCGA-D7-5579 
        4.01        55.04        21.07         7.99         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6528 
        9.80         9.63         0.69         5.95         6.61         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        3.65         4.70         4.04         2.93         4.27         0.62 
TCGA-F1-6177 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-HJ-7597 TCGA-IN-7808 
        6.54        72.23         0.39         0.20        26.43         3.55 
TCGA-IP-7968 
        2.53 

$`AMP PEAK 11(8Q24.21) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6706 
        0.10         1.35         0.85         0.82         0.62         2.17 
TCGA-BR-6710 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7958 
        0.66         1.22         0.46         0.16         0.99         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 
        1.55         1.48         0.76         0.82         0.69         0.49 
TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4465 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
       27.02         1.02         8.98         1.02         1.02         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5725 TCGA-D7-5577 
        1.02         0.99         5.98        70.06        15.02         8.65 
TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6527 TCGA-EQ-8122 TCGA-F1-6874 
       15.65         8.19         6.90         4.14         7.79         2.01 
TCGA-FP-7916 TCGA-FP-7998 TCGA-IN-7806 
        3.02         3.58         6.87 

  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                          0.07                           0.10 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                         72.23                          70.06 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                          4.01                           1.02 
[1] "0.1 - 72.2 (4.0)" "0.1 - 70.1 (1.0)"
                    TCGA-B7-5816                     TCGA-B7-5818 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
[1] "hr=" "1.3"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(8Q24.21) MUTATED     39   63
  AMP PEAK 11(8Q24.21) WILD-TYPE   26   33
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  FEMALE                           39                             26
  MALE                             63                             33
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 11(8Q24.21) MUTATED                                       8
  AMP PEAK 11(8Q24.21) WILD-TYPE                                    11
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 11(8Q24.21) MUTATED                                                       53
  AMP PEAK 11(8Q24.21) WILD-TYPE                                                     26
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 11(8Q24.21) MUTATED                                           1
  AMP PEAK 11(8Q24.21) WILD-TYPE                                         0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 11(8Q24.21) MUTATED                                                   5
  AMP PEAK 11(8Q24.21) WILD-TYPE                                                 4
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 11(8Q24.21) MUTATED                                                    1
  AMP PEAK 11(8Q24.21) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 11(8Q24.21) MUTATED                                                  8
  AMP PEAK 11(8Q24.21) WILD-TYPE                                                2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 11(8Q24.21) MUTATED                                                                       22
  AMP PEAK 11(8Q24.21) WILD-TYPE                                                                     13
D11V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 11(8Q24.21) MUTATED    5 36 41 11
  AMP PEAK 11(8Q24.21) WILD-TYPE  1 17 18 22
D11V5, multiclass
    clus
vv   AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  T1                            5                              1
  T2                           36                             17
  T3                           41                             18
  T4                           11                             22
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 11(8Q24.21) MUTATED   31 33 18 10
  AMP PEAK 11(8Q24.21) WILD-TYPE 19 24  6  9
D11V6, multiclass
    clus
vv   AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  N0                           31                             19
  N1                           33                             24
  N2                           18                              6
  N3                           10                              9
                                vv
clus                             M0 M1 MX
  AMP PEAK 11(8Q24.21) MUTATED   84 10  8
  AMP PEAK 11(8Q24.21) WILD-TYPE 48  8  3
D11V7, multiclass
    clus
vv   AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  M0                           84                             48
  M1                           10                              8
  MX                            8                              3
                                vv
clus                              I II III IV
  AMP PEAK 11(8Q24.21) MUTATED   16 29  25 18
  AMP PEAK 11(8Q24.21) WILD-TYPE  9 14  23 11
D11V8, multiclass
     clus
vv    AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  I                             16                              9
  II                            29                             14
  III                           25                             23
  IV                            18                             11
D11V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 11(8Q24.21) MUTATED      3   99
  AMP PEAK 11(8Q24.21) WILD-TYPE    2   57
     clus
vv    AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  NO                             3                              2
  YES                           99                             57

Clustering(12) Variable = Amp Peak 12(9p24.1) mutation analysis
D12V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 12(9P24.1) MUTATED   12  3
  AMP PEAK 12(9P24.1) WILD-TYPE 96 13
  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                           15                           109 
  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                            3                            13 
$`AMP PEAK 12(9P24.1) MUTATED`
TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-7707 TCGA-CD-5798 TCGA-CD-5801 
        2.17         0.99         1.22         0.13         0.82         0.49 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4460 TCGA-CG-4477 TCGA-D7-6528 TCGA-D7-6818 
       52.96         8.05        21.99         1.02         1.68         4.04 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6875 
        4.27         0.62        72.23 

$`AMP PEAK 12(9P24.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6710 
        0.85         0.82         0.62         0.62         1.71         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 
        0.46         1.25         1.05         0.82         0.69         0.16 
TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        4.54         0.99         0.95         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 
        1.48         0.76         0.69         0.36         0.30         0.07 
TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4438 
       20.02         3.02        27.02        15.95         1.02        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
        1.02         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         6.94         1.02         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
        0.95        70.06        12.03        15.02        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       65.10         4.01        55.04        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        3.58         4.54         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 
        6.90         0.69         5.95         6.61         4.14         3.65 
TCGA-D7-6817 TCGA-D7-6820 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 
        4.70         2.93         7.79         6.54         2.01         0.39 
TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
        0.20         3.02         3.58        26.43         6.87         3.55 
TCGA-IP-7968 
        2.53 

  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                         0.13                          0.07 
  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                        72.23                         70.06 
  AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE 
                         1.68                          1.48 
[1] "0.1 - 72.2 (1.7)" "0.1 - 70.1 (1.5)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 12(9P24.1) MUTATED"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 12(9P24.1) MUTATED"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 12(9P24.1) MUTATED"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 12(9P24.1) MUTATED"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 12(9P24.1) MUTATED"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 12(9P24.1) MUTATED" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 12(9P24.1) MUTATED"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 12(9P24.1) WILD-TYPE"   "AMP PEAK 12(9P24.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"AMP PEAK 12(9P24.1) WILD-TYPE" "AMP PEAK 12(9P24.1) WILD-TYPE" 
[1] "hr=" "1.1"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(9P24.1) MUTATED      8   14
  AMP PEAK 12(9P24.1) WILD-TYPE   57   82
        clus
vv       AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  FEMALE                           8                            57
  MALE                            14                            82
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 12(9P24.1) MUTATED                                       1
  AMP PEAK 12(9P24.1) WILD-TYPE                                    18
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 12(9P24.1) MUTATED                                                       12
  AMP PEAK 12(9P24.1) WILD-TYPE                                                     67
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 12(9P24.1) MUTATED                                           0
  AMP PEAK 12(9P24.1) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 12(9P24.1) MUTATED                                                   2
  AMP PEAK 12(9P24.1) WILD-TYPE                                                 7
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 12(9P24.1) MUTATED                                                    0
  AMP PEAK 12(9P24.1) WILD-TYPE                                                  3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 12(9P24.1) MUTATED                                                  2
  AMP PEAK 12(9P24.1) WILD-TYPE                                                8
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 12(9P24.1) MUTATED                                                                        5
  AMP PEAK 12(9P24.1) WILD-TYPE                                                                     30
D12V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 12(9P24.1) MUTATED    2 10  7  2
  AMP PEAK 12(9P24.1) WILD-TYPE  4 43 52 31
D12V5, multiclass
    clus
vv   AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  T1                           2                             4
  T2                          10                            43
  T3                           7                            52
  T4                           2                            31
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK 12(9P24.1) MUTATED   10  7  1  2
  AMP PEAK 12(9P24.1) WILD-TYPE 40 50 23 17
D12V6, multiclass
    clus
vv   AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  N0                          10                            40
  N1                           7                            50
  N2                           1                            23
  N3                           2                            17
                               vv
clus                             M0  M1  MX
  AMP PEAK 12(9P24.1) MUTATED    19   2   1
  AMP PEAK 12(9P24.1) WILD-TYPE 113  16  10
D12V7, multiclass
    clus
vv   AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  M0                          19                           113
  M1                           2                            16
  MX                           1                            10
                               vv
clus                             I II III IV
  AMP PEAK 12(9P24.1) MUTATED    8  4   4  3
  AMP PEAK 12(9P24.1) WILD-TYPE 17 39  44 26
D12V8, multiclass
     clus
vv    AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  I                             8                            17
  II                            4                            39
  III                           4                            44
  IV                            3                            26
D12V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 12(9P24.1) MUTATED      2   20
  AMP PEAK 12(9P24.1) WILD-TYPE    3  136
     clus
vv    AMP PEAK 12(9P24.1) MUTATED AMP PEAK 12(9P24.1) WILD-TYPE
  NO                            2                             3
  YES                          20                           136

Clustering(13) Variable = Amp Peak 13(9q34.3) mutation analysis
D13V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 13(9Q34.3) MUTATED   22  3
  AMP PEAK 13(9Q34.3) WILD-TYPE 86 13
  AMP PEAK 13(9Q34.3) MUTATED AMP PEAK 13(9Q34.3) WILD-TYPE 
                           25                            99 
  AMP PEAK 13(9Q34.3) MUTATED AMP PEAK 13(9Q34.3) WILD-TYPE 
                            3                            13 
$`AMP PEAK 13(9Q34.3) MUTATED`
TCGA-BR-6564 TCGA-BR-6707 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 
        0.82         0.99         1.48         1.25         0.13         1.05 
TCGA-BR-7717 TCGA-CD-5800 TCGA-CD-5801 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4436 
        0.69         0.36         0.49         3.02        27.02        52.96 
TCGA-CG-4449 TCGA-CG-4466 TCGA-CG-5718 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6526 
       19.07        18.94         1.02         3.58         4.54         6.61 
TCGA-D7-6528 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6875 TCGA-HJ-7597 
        1.68         4.04         2.93         0.62        72.23        26.43 
TCGA-IN-7808 
        3.55 

$`AMP PEAK 13(9Q34.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6709 
        0.85         0.62         0.62         1.71         2.17         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7703 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 
        0.46         0.82         0.16         4.54         0.99         0.95 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.69         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 
        0.26         1.18         1.55         1.48         0.76         0.82 
TCGA-CD-5799 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4305 TCGA-CG-4306 
        0.69         0.30         0.07        20.02        15.95         1.02 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 
       12.03        21.99         1.02         8.98         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         1.02         6.94         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       31.04        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        8.65         9.80        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6822 
        0.69         5.95         4.14         3.65         4.70         4.27 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 
        7.79         6.54         2.01         0.39         0.20         3.02 
TCGA-FP-7998 TCGA-IN-7806 TCGA-IP-7968 
        3.58         6.87         2.53 

  AMP PEAK 13(9Q34.3) MUTATED AMP PEAK 13(9Q34.3) WILD-TYPE 
                         0.13                          0.07 
  AMP PEAK 13(9Q34.3) MUTATED AMP PEAK 13(9Q34.3) WILD-TYPE 
                        72.23                         70.06 
  AMP PEAK 13(9Q34.3) MUTATED AMP PEAK 13(9Q34.3) WILD-TYPE 
                         2.93                          1.41 
[1] "0.1 - 72.2 (2.9)" "0.1 - 70.1 (1.4)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "AMP PEAK 13(9Q34.3) MUTATED"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 13(9Q34.3) WILD-TYPE"   "AMP PEAK 13(9Q34.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 13(9Q34.3) WILD-TYPE" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 13(9Q34.3) MUTATED" "AMP PEAK 13(9Q34.3) WILD-TYPE" 
[1] "hr=" "2.1"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(9Q34.3) MUTATED     16   23
  AMP PEAK 13(9Q34.3) WILD-TYPE   49   73
        clus
vv       AMP PEAK 13(9Q34.3) MUTATED AMP PEAK 13(9Q34.3) WILD-TYPE
  FEMALE                          16                            49
  MALE                            23                            73
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 13(9Q34.3) MUTATED                                       3
  AMP PEAK 13(9Q34.3) WILD-TYPE                                    16
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 13(9Q34.3) MUTATED                                                       20
  AMP PEAK 13(9Q34.3) WILD-TYPE                                                     59
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 13(9Q34.3) MUTATED                                           1
  AMP PEAK 13(9Q34.3) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 13(9Q34.3) MUTATED                                                   4
  AMP PEAK 13(9Q34.3) WILD-TYPE                                                 5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 13(9Q34.3) MUTATED                                                    1
  AMP PEAK 13(9Q34.3) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 13(9Q34.3) MUTATED                                                  4
  AMP PEAK 13(9Q34.3) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 13(9Q34.3) MUTATED                                                                        5
  AMP PEAK 13(9Q34.3) WILD-TYPE                                                                     30
D13V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 13(9Q34.3) MUTATED    2 13 16  4
  AMP PEAK 13(9Q34.3) WILD-TYPE  4 40 43 29
D13V5, multiclass
    clus
vv   AMP PEAK 13(9Q34.3) MUTATED AMP PEAK 13(9Q34.3) WILD-TYPE
  T1                           2                             4
  T2                          13                            40
  T3                          16                            43
  T4                           4                            29
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK 13(9Q34.3) MUTATED   13 15  3  5
  AMP PEAK 13(9Q34.3) WILD-TYPE 37 42 21 14
D13V6, multiclass
    clus
vv   AMP PEAK 13(9Q34.3) MUTATED AMP PEAK 13(9Q34.3) WILD-TYPE
  N0                          13                            37
  N1                          15                            42
  N2                           3                            21
  N3                           5                            14
                               vv
clus                            M0 M1 MX
  AMP PEAK 13(9Q34.3) MUTATED   34  3  2
  AMP PEAK 13(9Q34.3) WILD-TYPE 98 15  9
D13V7, multiclass
    clus
vv   AMP PEAK 13(9Q34.3) MUTATED AMP PEAK 13(9Q34.3) WILD-TYPE
  M0                          34                            98
  M1                           3                            15
  MX                           2                             9
                               vv
clus                             I II III IV
  AMP PEAK 13(9Q34.3) MUTATED    8 13   7  5
  AMP PEAK 13(9Q34.3) WILD-TYPE 17 30  41 24
D13V8, multiclass
     clus
vv    AMP PEAK 13(9Q34.3) MUTATED AMP PEAK 13(9Q34.3) WILD-TYPE
  I                             8                            17
  II                           13                            30
  III                           7                            41
  IV                            5                            24
D13V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(9Q34.3) MUTATED      3   36
  AMP PEAK 13(9Q34.3) WILD-TYPE    2  120
     clus
vv    AMP PEAK 13(9Q34.3) MUTATED AMP PEAK 13(9Q34.3) WILD-TYPE
  NO                            3                             2
  YES                          36                           120

Clustering(14) Variable = Amp Peak 14(10q26.13) mutation analysis
D14V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 14(10Q26.13) MUTATED   22  3
  AMP PEAK 14(10Q26.13) WILD-TYPE 86 13
  AMP PEAK 14(10Q26.13) MUTATED AMP PEAK 14(10Q26.13) WILD-TYPE 
                             25                              99 
  AMP PEAK 14(10Q26.13) MUTATED AMP PEAK 14(10Q26.13) WILD-TYPE 
                              3                              13 
$`AMP PEAK 14(10Q26.13) MUTATED`
TCGA-BR-6457 TCGA-BR-6564 TCGA-BR-6803 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7715 
        1.35         0.82         0.66         1.48         1.25         1.05 
TCGA-BR-7716 TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4443 TCGA-CG-4449 
        0.82         0.49        20.02        27.02        29.98        19.07 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5718 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-6519 
        7.07        12.00         1.02         4.01        55.04        15.65 
TCGA-D7-6520 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6818 TCGA-EQ-5647 TCGA-F1-6875 
        9.63         6.61         1.68         4.04         0.62        72.23 
TCGA-FP-7735 
        0.39 

$`AMP PEAK 14(10Q26.13) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6458 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 
        0.66         1.12         0.76         0.26         1.22         0.46 
TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 
        0.13         0.69         0.16         4.54         0.99         0.95 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.69         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 
        0.26         1.18         1.55         1.48         0.76         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4305 
        0.69         0.36         0.30         0.07         3.02        15.95 
TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 
        1.02        52.96         8.05        54.05         4.01        14.01 
TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       47.05        12.03        21.99         1.02         8.98        18.94 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         1.02         6.94         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
       31.04        65.10        21.07         7.99         8.65         3.58 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
        4.54         9.80         8.19         6.90         0.69         5.95 
TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-8122 
        4.14         3.65         4.70         2.93         4.27         7.79 
TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 
        6.54         2.01         0.20         3.02         3.58        26.43 
TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        6.87         3.55         2.53 

  AMP PEAK 14(10Q26.13) MUTATED AMP PEAK 14(10Q26.13) WILD-TYPE 
                           0.39                            0.07 
  AMP PEAK 14(10Q26.13) MUTATED AMP PEAK 14(10Q26.13) WILD-TYPE 
                          72.23                           70.06 
  AMP PEAK 14(10Q26.13) MUTATED AMP PEAK 14(10Q26.13) WILD-TYPE 
                           4.01                            1.41 
[1] "0.4 - 72.2 (4.0)" "0.1 - 70.1 (1.4)"
                     TCGA-B7-5816                      TCGA-B7-5818 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "AMP PEAK 14(10Q26.13) MUTATED"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4469                      TCGA-CG-4472 
  "AMP PEAK 14(10Q26.13) MUTATED"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6818                      TCGA-D7-6820 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-FP-7735                      TCGA-FP-7829 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "AMP PEAK 14(10Q26.13) MUTATED"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4469                      TCGA-CG-4472 
  "AMP PEAK 14(10Q26.13) MUTATED"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6818                      TCGA-D7-6820 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-FP-7735                      TCGA-FP-7829 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "AMP PEAK 14(10Q26.13) MUTATED"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-4469                      TCGA-CG-4472 
  "AMP PEAK 14(10Q26.13) MUTATED"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6818                      TCGA-D7-6820 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"AMP PEAK 14(10Q26.13) WILD-TYPE"   "AMP PEAK 14(10Q26.13) MUTATED" 
                     TCGA-FP-7735                      TCGA-FP-7829 
  "AMP PEAK 14(10Q26.13) MUTATED" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"AMP PEAK 14(10Q26.13) WILD-TYPE" "AMP PEAK 14(10Q26.13) WILD-TYPE" 
[1] "hr=" "2.7"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 14(10Q26.13) MUTATED     15   18
  AMP PEAK 14(10Q26.13) WILD-TYPE   50   78
        clus
vv       AMP PEAK 14(10Q26.13) MUTATED AMP PEAK 14(10Q26.13) WILD-TYPE
  FEMALE                            15                              50
  MALE                              18                              78
                                 vv
clus                              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 14(10Q26.13) MUTATED                                       3
  AMP PEAK 14(10Q26.13) WILD-TYPE                                    16
                                 vv
clus                              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 14(10Q26.13) MUTATED                                                       19
  AMP PEAK 14(10Q26.13) WILD-TYPE                                                     60
                                 vv
clus                              STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 14(10Q26.13) MUTATED                                           0
  AMP PEAK 14(10Q26.13) WILD-TYPE                                         1
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 14(10Q26.13) MUTATED                                                   1
  AMP PEAK 14(10Q26.13) WILD-TYPE                                                 8
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 14(10Q26.13) MUTATED                                                    0
  AMP PEAK 14(10Q26.13) WILD-TYPE                                                  3
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 14(10Q26.13) MUTATED                                                  3
  AMP PEAK 14(10Q26.13) WILD-TYPE                                                7
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 14(10Q26.13) MUTATED                                                                        6
  AMP PEAK 14(10Q26.13) WILD-TYPE                                                                     29
D14V4, multiclass
                                 vv
clus                              T1 T2 T3 T4
  AMP PEAK 14(10Q26.13) MUTATED    1 12 13  4
  AMP PEAK 14(10Q26.13) WILD-TYPE  5 41 46 29
D14V5, multiclass
    clus
vv   AMP PEAK 14(10Q26.13) MUTATED AMP PEAK 14(10Q26.13) WILD-TYPE
  T1                             1                               5
  T2                            12                              41
  T3                            13                              46
  T4                             4                              29
                                 vv
clus                              N0 N1 N2 N3
  AMP PEAK 14(10Q26.13) MUTATED   11 12  4  4
  AMP PEAK 14(10Q26.13) WILD-TYPE 39 45 20 15
D14V6, multiclass
    clus
vv   AMP PEAK 14(10Q26.13) MUTATED AMP PEAK 14(10Q26.13) WILD-TYPE
  N0                            11                              39
  N1                            12                              45
  N2                             4                              20
  N3                             4                              15
                                 vv
clus                               M0  M1  MX
  AMP PEAK 14(10Q26.13) MUTATED    29   2   2
  AMP PEAK 14(10Q26.13) WILD-TYPE 103  16   9
D14V7, multiclass
    clus
vv   AMP PEAK 14(10Q26.13) MUTATED AMP PEAK 14(10Q26.13) WILD-TYPE
  M0                            29                             103
  M1                             2                              16
  MX                             2                               9
                                 vv
clus                               I II III IV
  AMP PEAK 14(10Q26.13) MUTATED    6  8   8  8
  AMP PEAK 14(10Q26.13) WILD-TYPE 19 35  40 21
D14V8, multiclass
     clus
vv    AMP PEAK 14(10Q26.13) MUTATED AMP PEAK 14(10Q26.13) WILD-TYPE
  I                               6                              19
  II                              8                              35
  III                             8                              40
  IV                              8                              21
D14V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 14(10Q26.13) MUTATED      2   31
  AMP PEAK 14(10Q26.13) WILD-TYPE    3  125
     clus
vv    AMP PEAK 14(10Q26.13) MUTATED AMP PEAK 14(10Q26.13) WILD-TYPE
  NO                              2                               3
  YES                            31                             125

Clustering(15) Variable = Amp Peak 15(11p13) mutation analysis
D15V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 15(11P13) MUTATED   15  2
  AMP PEAK 15(11P13) WILD-TYPE 93 14
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                          17                          107 
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                           2                           14 
$`AMP PEAK 15(11P13) MUTATED`
TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-7717 TCGA-BR-7901 
        0.10         1.41         1.35         0.82         0.69         0.95 
TCGA-CG-4300 TCGA-CG-4438 TCGA-CG-4449 TCGA-CG-4472 TCGA-CG-5717 TCGA-CG-5722 
       20.02        54.05        19.07        12.00         6.94         0.95 
TCGA-D7-6520 TCGA-D7-6822 TCGA-EQ-5647 TCGA-FP-7916 TCGA-IN-7808 
        9.63         4.27         0.62         3.02         3.55 

$`AMP PEAK 15(11P13) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 
        5.62         0.95         1.35         0.85         0.62         0.62 
TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 
        1.71         2.17         0.99         1.22         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        0.76         0.66         0.26         1.22         1.48         0.46 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 
        1.25         0.13         1.05         0.82         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.99         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.82         0.69         0.36         0.49         0.30         0.07 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4460 
        4.01        14.01        29.98        47.05        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 
        1.02         8.98        18.94         7.07         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5723 
        1.02         1.02         1.02         0.99         5.98        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
        9.80        15.65         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        6.61         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 
        2.93         7.79         6.54         2.01        72.23         0.39 
TCGA-FP-7829 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
        0.20         3.58        26.43         6.87         2.53 

  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                        0.10                         0.07 
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                       54.05                        72.23 
  AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE 
                        3.02                         1.48 
[1] "0.1 - 54.0 (3.0)" "0.1 - 72.2 (1.5)"
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6527                   TCGA-D7-6528 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 15(11P13) MUTATED"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6527                   TCGA-D7-6528 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 15(11P13) MUTATED"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 15(11P13) WILD-TYPE"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6527                   TCGA-D7-6528 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 15(11P13) MUTATED"   "AMP PEAK 15(11P13) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 15(11P13) WILD-TYPE" "AMP PEAK 15(11P13) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 15(11P13) MUTATED" "AMP PEAK 15(11P13) WILD-TYPE" 
[1] "hr=" "1"  
D15V2, continuous
D15V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 15(11P13) MUTATED      8   17
  AMP PEAK 15(11P13) WILD-TYPE   57   79
        clus
vv       AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  FEMALE                          8                           57
  MALE                           17                           79
                              vv
clus                           STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 15(11P13) MUTATED                                       3
  AMP PEAK 15(11P13) WILD-TYPE                                    16
                              vv
clus                           STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 15(11P13) MUTATED                                                       15
  AMP PEAK 15(11P13) WILD-TYPE                                                     64
                              vv
clus                           STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 15(11P13) MUTATED                                           0
  AMP PEAK 15(11P13) WILD-TYPE                                         1
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 15(11P13) MUTATED                                                   2
  AMP PEAK 15(11P13) WILD-TYPE                                                 7
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 15(11P13) MUTATED                                                    0
  AMP PEAK 15(11P13) WILD-TYPE                                                  3
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 15(11P13) MUTATED                                                  2
  AMP PEAK 15(11P13) WILD-TYPE                                                8
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 15(11P13) MUTATED                                                                        2
  AMP PEAK 15(11P13) WILD-TYPE                                                                     33
D15V4, multiclass
                              vv
clus                           T1 T2 T3 T4
  AMP PEAK 15(11P13) MUTATED    0  6 10  6
  AMP PEAK 15(11P13) WILD-TYPE  6 47 49 27
D15V5, multiclass
    clus
vv   AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  T1                          0                            6
  T2                          6                           47
  T3                         10                           49
  T4                          6                           27
                              vv
clus                           N0 N1 N2 N3
  AMP PEAK 15(11P13) MUTATED    2 11  5  4
  AMP PEAK 15(11P13) WILD-TYPE 48 46 19 15
D15V6, multiclass
    clus
vv   AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  N0                          2                           48
  N1                         11                           46
  N2                          5                           19
  N3                          4                           15
                              vv
clus                            M0  M1  MX
  AMP PEAK 15(11P13) MUTATED    20   3   2
  AMP PEAK 15(11P13) WILD-TYPE 112  15   9
D15V7, multiclass
    clus
vv   AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  M0                         20                          112
  M1                          3                           15
  MX                          2                            9
                              vv
clus                            I II III IV
  AMP PEAK 15(11P13) MUTATED    2  4   8  7
  AMP PEAK 15(11P13) WILD-TYPE 23 39  40 22
D15V8, multiclass
     clus
vv    AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  I                            2                           23
  II                           4                           39
  III                          8                           40
  IV                           7                           22
D15V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 15(11P13) MUTATED      1   24
  AMP PEAK 15(11P13) WILD-TYPE    4  132
     clus
vv    AMP PEAK 15(11P13) MUTATED AMP PEAK 15(11P13) WILD-TYPE
  NO                           1                            4
  YES                         24                          132

Clustering(16) Variable = Amp Peak 16(11q13.3) mutation analysis
D16V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 16(11Q13.3) MUTATED   14  2
  AMP PEAK 16(11Q13.3) WILD-TYPE 94 14
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                            16                            108 
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                             2                             14 
$`AMP PEAK 16(11Q13.3) MUTATED`
TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-7704 TCGA-BR-7717 TCGA-BR-7901 TCGA-CD-5799 
        1.41         1.35         1.25         0.69         0.95         0.69 
TCGA-CG-4300 TCGA-CG-4438 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4472 
       20.02        54.05        47.05        19.07        12.03        12.00 
TCGA-CG-5722 TCGA-CG-5724 TCGA-EQ-8122 TCGA-F1-6875 
        0.95        12.03         7.79        72.23 

$`AMP PEAK 16(11Q13.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.10         0.95         1.35         0.85         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7722 
        1.48         0.46         0.13         1.05         0.82         0.16 
TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        4.54         0.99         0.69         0.16         1.08         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        1.32         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.26         0.43         0.26         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        0.76         0.82         0.36         0.49         0.30         0.07 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
        4.01        14.01        29.98        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
       18.94         7.07         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5725 
        1.02         1.02         0.99         5.98        70.06        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 
        4.27         0.62         6.54         2.01         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        3.02         3.58        26.43         6.87         3.55         2.53 

  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                          0.69                           0.07 
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                         72.23                          70.06 
  AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE 
                         9.895                          1.480 
[1] "0.7 - 72.2 (9.9)" "0.1 - 70.1 (1.5)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 16(11Q13.3) MUTATED"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 16(11Q13.3) MUTATED"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 16(11Q13.3) MUTATED"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "AMP PEAK 16(11Q13.3) MUTATED" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 16(11Q13.3) WILD-TYPE"   "AMP PEAK 16(11Q13.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 16(11Q13.3) WILD-TYPE" "AMP PEAK 16(11Q13.3) WILD-TYPE" 
[1] "hr=" "4.3"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(11Q13.3) MUTATED      7   21
  AMP PEAK 16(11Q13.3) WILD-TYPE   58   75
        clus
vv       AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  FEMALE                            7                             58
  MALE                             21                             75
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 16(11Q13.3) MUTATED                                       2
  AMP PEAK 16(11Q13.3) WILD-TYPE                                    17
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 16(11Q13.3) MUTATED                                                       15
  AMP PEAK 16(11Q13.3) WILD-TYPE                                                     64
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 16(11Q13.3) MUTATED                                           0
  AMP PEAK 16(11Q13.3) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 16(11Q13.3) MUTATED                                                   3
  AMP PEAK 16(11Q13.3) WILD-TYPE                                                 6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 16(11Q13.3) MUTATED                                                    0
  AMP PEAK 16(11Q13.3) WILD-TYPE                                                  3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 16(11Q13.3) MUTATED                                                  0
  AMP PEAK 16(11Q13.3) WILD-TYPE                                               10
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 16(11Q13.3) MUTATED                                                                        6
  AMP PEAK 16(11Q13.3) WILD-TYPE                                                                     29
D16V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 16(11Q13.3) MUTATED    1  6 12  5
  AMP PEAK 16(11Q13.3) WILD-TYPE  5 47 47 28
D16V5, multiclass
    clus
vv   AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  T1                            1                              5
  T2                            6                             47
  T3                           12                             47
  T4                            5                             28
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 16(11Q13.3) MUTATED    5 11  5  3
  AMP PEAK 16(11Q13.3) WILD-TYPE 45 46 19 16
D16V6, multiclass
    clus
vv   AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  N0                            5                             45
  N1                           11                             46
  N2                            5                             19
  N3                            3                             16
                                vv
clus                              M0  M1  MX
  AMP PEAK 16(11Q13.3) MUTATED    24   2   2
  AMP PEAK 16(11Q13.3) WILD-TYPE 108  16   9
D16V7, multiclass
    clus
vv   AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  M0                           24                            108
  M1                            2                             16
  MX                            2                              9
                                vv
clus                              I II III IV
  AMP PEAK 16(11Q13.3) MUTATED    2  8   6  7
  AMP PEAK 16(11Q13.3) WILD-TYPE 23 35  42 22
D16V8, multiclass
     clus
vv    AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  I                              2                             23
  II                             8                             35
  III                            6                             42
  IV                             7                             22
D16V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(11Q13.3) MUTATED      1   27
  AMP PEAK 16(11Q13.3) WILD-TYPE    4  129
     clus
vv    AMP PEAK 16(11Q13.3) MUTATED AMP PEAK 16(11Q13.3) WILD-TYPE
  NO                             1                              4
  YES                           27                            129

Clustering(17) Variable = Amp Peak 17(12p12.1) mutation analysis
D17V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 17(12P12.1) MUTATED   28  3
  AMP PEAK 17(12P12.1) WILD-TYPE 80 13
  AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE 
                            31                             93 
  AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE 
                             3                             13 
$`AMP PEAK 17(12P12.1) MUTATED`
TCGA-BR-6563 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6709 TCGA-BR-6801 TCGA-BR-7723 
        0.85         0.62         1.71         1.22         1.12         4.54 
TCGA-BR-7901 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5802 TCGA-CG-4300 TCGA-CG-4444 
        0.95         0.82         0.69         0.30        20.02        47.05 
TCGA-CG-4460 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5727 
       21.99        12.00         1.02         0.95        12.03        31.04 
TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6526 TCGA-D7-6817 
        3.58         9.80        15.65         8.19         6.61         4.70 
TCGA-D7-6820 TCGA-EQ-5647 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7998 TCGA-IN-7808 
        2.93         0.62         0.39         0.20         3.58         3.55 
TCGA-IP-7968 
        2.53 

$`AMP PEAK 17(12P12.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6802 
        0.82         0.62         2.17         0.99         0.66         0.76 
TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 
        0.66         0.26         1.22         1.48         0.46         1.25 
TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 
        0.13         1.05         0.82         0.69         0.16         0.99 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.69         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5800 
        0.26         1.18         1.55         1.48         0.76         0.36 
TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.49         0.07         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       19.07        12.03         1.02         8.98        18.94         7.07 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5730 
        5.98        70.06        15.02        28.96        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6520 
       55.04        21.07         7.99         8.65         4.54         9.63 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        6.90         0.69         5.95         4.14         1.68         3.65 
TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        4.04         4.27         7.79         6.54         2.01        72.23 
TCGA-FP-7916 TCGA-HJ-7597 TCGA-IN-7806 
        3.02        26.43         6.87 

  AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE 
                          0.20                           0.07 
  AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE 
                         47.05                          72.23 
  AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE 
                          2.93                           1.41 
[1] "0.2 - 47.0 (2.9)" "0.1 - 72.2 (1.4)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 17(12P12.1) MUTATED" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 17(12P12.1) WILD-TYPE"   "AMP PEAK 17(12P12.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 17(12P12.1) WILD-TYPE" "AMP PEAK 17(12P12.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 17(12P12.1) MUTATED"   "AMP PEAK 17(12P12.1) MUTATED" 
[1] "hr=" "1.3"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(12P12.1) MUTATED     13   24
  AMP PEAK 17(12P12.1) WILD-TYPE   52   72
        clus
vv       AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  FEMALE                           13                             52
  MALE                             24                             72
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 17(12P12.1) MUTATED                                       7
  AMP PEAK 17(12P12.1) WILD-TYPE                                    12
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 17(12P12.1) MUTATED                                                       18
  AMP PEAK 17(12P12.1) WILD-TYPE                                                     61
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 17(12P12.1) MUTATED                                           0
  AMP PEAK 17(12P12.1) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 17(12P12.1) MUTATED                                                   2
  AMP PEAK 17(12P12.1) WILD-TYPE                                                 7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 17(12P12.1) MUTATED                                                    0
  AMP PEAK 17(12P12.1) WILD-TYPE                                                  3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 17(12P12.1) MUTATED                                                  4
  AMP PEAK 17(12P12.1) WILD-TYPE                                                6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 17(12P12.1) MUTATED                                                                        4
  AMP PEAK 17(12P12.1) WILD-TYPE                                                                     31
D17V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 17(12P12.1) MUTATED    0  8 21  7
  AMP PEAK 17(12P12.1) WILD-TYPE  6 45 38 26
D17V5, multiclass
    clus
vv   AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  T1                            0                              6
  T2                            8                             45
  T3                           21                             38
  T4                            7                             26
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 17(12P12.1) MUTATED    7 12 12  6
  AMP PEAK 17(12P12.1) WILD-TYPE 43 45 12 13
D17V6, multiclass
    clus
vv   AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  N0                            7                             43
  N1                           12                             45
  N2                           12                             12
  N3                            6                             13
                                vv
clus                              M0  M1  MX
  AMP PEAK 17(12P12.1) MUTATED    28   6   3
  AMP PEAK 17(12P12.1) WILD-TYPE 104  12   8
D17V7, multiclass
    clus
vv   AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  M0                           28                            104
  M1                            6                             12
  MX                            3                              8
                                vv
clus                              I II III IV
  AMP PEAK 17(12P12.1) MUTATED    1  9  18  8
  AMP PEAK 17(12P12.1) WILD-TYPE 24 34  30 21
D17V8, multiclass
     clus
vv    AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  I                              1                             24
  II                             9                             34
  III                           18                             30
  IV                             8                             21
D17V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(12P12.1) MUTATED      0   37
  AMP PEAK 17(12P12.1) WILD-TYPE    5  119
     clus
vv    AMP PEAK 17(12P12.1) MUTATED AMP PEAK 17(12P12.1) WILD-TYPE
  NO                             0                              5
  YES                           37                            119

Clustering(18) Variable = Amp Peak 18(12q15) mutation analysis
D18V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 18(12Q15) MUTATED   24  3
  AMP PEAK 18(12Q15) WILD-TYPE 84 13
  AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE 
                          27                           97 
  AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE 
                           3                           13 
$`AMP PEAK 18(12Q15) MUTATED`
TCGA-BR-6563 TCGA-BR-6566 TCGA-BR-7723 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5802 
        0.85         0.62         4.54         0.82         0.69         0.30 
TCGA-CG-4301 TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4472 TCGA-CG-4474 
        3.02        47.05        12.03        21.99        12.00         1.02 
TCGA-CG-5722 TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-6518 
        0.95        15.02        31.04        55.04         3.58         9.80 
TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6817 TCGA-EQ-5647 
       15.65         8.19         6.61         4.14         4.70         0.62 
TCGA-FP-7916 TCGA-FP-7998 TCGA-IN-7808 
        3.02         3.58         3.55 

$`AMP PEAK 18(12Q15) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.48         0.46         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 
        0.69         0.16         0.99         0.95         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5803 
        1.55         1.48         0.76         0.36         0.49         0.07 
TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
       20.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4462 
       54.05         4.01        14.01        29.98        19.07         1.02 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        8.98        18.94         7.07         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5724 
        1.02         1.02         0.99         5.98        70.06        12.03 
TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       28.96        65.10         4.01        21.07         7.99         8.65 
TCGA-D7-5579 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6528 
        4.54         9.63         6.90         0.69         5.95         1.68 
TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6177 
        3.65         4.04         2.93         4.27         7.79         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-HJ-7597 TCGA-IN-7806 
        2.01        72.23         0.39         0.20        26.43         6.87 
TCGA-IP-7968 
        2.53 

  AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE 
                        0.30                         0.07 
  AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE 
                       55.04                        72.23 
  AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE 
                        4.14                         1.32 
[1] "0.3 - 55.0 (4.1)" "0.1 - 72.2 (1.3)"
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
  "AMP PEAK 18(12Q15) MUTATED"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4474                   TCGA-CG-4477 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
  "AMP PEAK 18(12Q15) MUTATED"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 18(12Q15) MUTATED"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
  "AMP PEAK 18(12Q15) MUTATED"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4474                   TCGA-CG-4477 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
  "AMP PEAK 18(12Q15) MUTATED"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 18(12Q15) MUTATED"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
  "AMP PEAK 18(12Q15) MUTATED"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-4474                   TCGA-CG-4477 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
  "AMP PEAK 18(12Q15) MUTATED"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
"AMP PEAK 18(12Q15) WILD-TYPE"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 18(12Q15) MUTATED"   "AMP PEAK 18(12Q15) MUTATED" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 18(12Q15) WILD-TYPE" "AMP PEAK 18(12Q15) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 18(12Q15) MUTATED" "AMP PEAK 18(12Q15) WILD-TYPE" 
[1] "hr=" "1.6"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(12Q15) MUTATED     12   23
  AMP PEAK 18(12Q15) WILD-TYPE   53   73
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  FEMALE                         12                           53
  MALE                           23                           73
                              vv
clus                           STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 18(12Q15) MUTATED                                       7
  AMP PEAK 18(12Q15) WILD-TYPE                                    12
                              vv
clus                           STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 18(12Q15) MUTATED                                                       14
  AMP PEAK 18(12Q15) WILD-TYPE                                                     65
                              vv
clus                           STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 18(12Q15) MUTATED                                           0
  AMP PEAK 18(12Q15) WILD-TYPE                                         1
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 18(12Q15) MUTATED                                                   2
  AMP PEAK 18(12Q15) WILD-TYPE                                                 7
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 18(12Q15) MUTATED                                                    1
  AMP PEAK 18(12Q15) WILD-TYPE                                                  2
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 18(12Q15) MUTATED                                                  3
  AMP PEAK 18(12Q15) WILD-TYPE                                                7
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 18(12Q15) MUTATED                                                                        5
  AMP PEAK 18(12Q15) WILD-TYPE                                                                     30
D18V4, multiclass
                              vv
clus                           T1 T2 T3 T4
  AMP PEAK 18(12Q15) MUTATED    0 12 13  8
  AMP PEAK 18(12Q15) WILD-TYPE  6 41 46 25
D18V5, multiclass
    clus
vv   AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  T1                          0                            6
  T2                         12                           41
  T3                         13                           46
  T4                          8                           25
                              vv
clus                           N0 N1 N2 N3
  AMP PEAK 18(12Q15) MUTATED    8 11  8  7
  AMP PEAK 18(12Q15) WILD-TYPE 42 46 16 12
D18V6, multiclass
    clus
vv   AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  N0                          8                           42
  N1                         11                           46
  N2                          8                           16
  N3                          7                           12
                              vv
clus                            M0  M1  MX
  AMP PEAK 18(12Q15) MUTATED    26   6   3
  AMP PEAK 18(12Q15) WILD-TYPE 106  12   8
D18V7, multiclass
    clus
vv   AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  M0                         26                          106
  M1                          6                           12
  MX                          3                            8
                              vv
clus                            I II III IV
  AMP PEAK 18(12Q15) MUTATED    3 11  10  9
  AMP PEAK 18(12Q15) WILD-TYPE 22 32  38 20
D18V8, multiclass
     clus
vv    AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  I                            3                           22
  II                          11                           32
  III                         10                           38
  IV                           9                           20
D18V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 18(12Q15) MUTATED      2   33
  AMP PEAK 18(12Q15) WILD-TYPE    3  123
     clus
vv    AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  NO                           2                            3
  YES                         33                          123

Clustering(19) Variable = Amp Peak 19(13q12.3) mutation analysis
D19V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 19(13Q12.3) MUTATED   39  5
  AMP PEAK 19(13Q12.3) WILD-TYPE 69 11
  AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE 
                            44                             80 
  AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE 
                             5                             11 
$`AMP PEAK 19(13Q12.3) MUTATED`
TCGA-B7-5818 TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6801 
        0.10         0.85         0.62         0.62         1.71         1.12 
TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7901 TCGA-CD-5799 
        1.48         1.25         0.69         4.54         0.95         0.69 
TCGA-CD-5800 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 
        0.36        20.02         3.02        15.95        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4444 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5719 
       54.05        47.05         7.07        12.00         1.02         1.02 
TCGA-CG-5724 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 
       12.03        31.04         4.01        55.04         7.99         8.65 
TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6524 TCGA-D7-6526 TCGA-D7-6815 
        3.58         9.80         8.19         0.69         6.61         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6875 TCGA-FP-7735 
        4.70         4.04         2.93         0.62        72.23         0.39 
TCGA-FP-7829 TCGA-IN-7808 
        0.20         3.55 

$`AMP PEAK 19(13Q12.3) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.95         1.41         1.35         1.35         0.82 
TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6803 
        2.17         0.99         1.22         0.66         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        0.26         1.22         0.46         0.13         1.05         0.82 
TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        0.16         0.99         0.69         0.16         1.08         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        1.32         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.26         0.43         0.26         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4304 
        0.76         0.82         0.49         0.30         0.07        27.02 
TCGA-CG-4306 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 
        1.02         4.01        14.01        29.98        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4477 TCGA-CG-5716 
       21.99         1.02         8.98        18.94         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        6.94         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-5579 TCGA-D7-6519 
       15.02        28.96        65.10        21.07         4.54        15.65 
TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6822 
        9.63         6.90         5.95         4.14         1.68         4.27 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 
        7.79         6.54         2.01         3.02         3.58        26.43 
TCGA-IN-7806 TCGA-IP-7968 
        6.87         2.53 

  AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE 
                          0.10                           0.07 
  AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE 
                         72.23                          70.06 
  AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE 
                         3.615                          1.270 
[1] "0.1 - 72.2 (3.6)" "0.1 - 70.1 (1.3)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 19(13Q12.3) WILD-TYPE"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 19(13Q12.3) MUTATED"   "AMP PEAK 19(13Q12.3) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 19(13Q12.3) WILD-TYPE" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 19(13Q12.3) MUTATED" "AMP PEAK 19(13Q12.3) WILD-TYPE" 
[1] "hr=" "2.2"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(13Q12.3) MUTATED     18   40
  AMP PEAK 19(13Q12.3) WILD-TYPE   47   56
        clus
vv       AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  FEMALE                           18                             47
  MALE                             40                             56
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 19(13Q12.3) MUTATED                                       9
  AMP PEAK 19(13Q12.3) WILD-TYPE                                    10
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 19(13Q12.3) MUTATED                                                       26
  AMP PEAK 19(13Q12.3) WILD-TYPE                                                     53
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 19(13Q12.3) MUTATED                                           0
  AMP PEAK 19(13Q12.3) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 19(13Q12.3) MUTATED                                                   2
  AMP PEAK 19(13Q12.3) WILD-TYPE                                                 7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 19(13Q12.3) MUTATED                                                    1
  AMP PEAK 19(13Q12.3) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 19(13Q12.3) MUTATED                                                  6
  AMP PEAK 19(13Q12.3) WILD-TYPE                                                4
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 19(13Q12.3) MUTATED                                                                       12
  AMP PEAK 19(13Q12.3) WILD-TYPE                                                                     23
D19V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 19(13Q12.3) MUTATED    1 23 20  9
  AMP PEAK 19(13Q12.3) WILD-TYPE  5 30 39 24
D19V5, multiclass
    clus
vv   AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  T1                            1                              5
  T2                           23                             30
  T3                           20                             39
  T4                            9                             24
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 19(13Q12.3) MUTATED   13 18 10 11
  AMP PEAK 19(13Q12.3) WILD-TYPE 37 39 14  8
D19V6, multiclass
    clus
vv   AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  N0                           13                             37
  N1                           18                             39
  N2                           10                             14
  N3                           11                              8
                                vv
clus                             M0 M1 MX
  AMP PEAK 19(13Q12.3) MUTATED   49  7  2
  AMP PEAK 19(13Q12.3) WILD-TYPE 83 11  9
D19V7, multiclass
    clus
vv   AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  M0                           49                             83
  M1                            7                             11
  MX                            2                              9
                                vv
clus                              I II III IV
  AMP PEAK 19(13Q12.3) MUTATED    5 15  17 14
  AMP PEAK 19(13Q12.3) WILD-TYPE 20 28  31 15
D19V8, multiclass
     clus
vv    AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  I                              5                             20
  II                            15                             28
  III                           17                             31
  IV                            14                             15
D19V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(13Q12.3) MUTATED      2   56
  AMP PEAK 19(13Q12.3) WILD-TYPE    3  100
     clus
vv    AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  NO                             2                              3
  YES                           56                            100

Clustering(20) Variable = Amp Peak 20(13q22.1) mutation analysis
D20V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 20(13Q22.1) MUTATED   43  7
  AMP PEAK 20(13Q22.1) WILD-TYPE 65  9
  AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE 
                            50                             74 
  AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE 
                             7                              9 
$`AMP PEAK 20(13Q22.1) MUTATED`
TCGA-B7-5818 TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6707 TCGA-BR-6801 
        0.10         0.85         0.62         0.62         0.99         1.12 
TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7723 
        1.48         1.25         1.05         0.82         0.69         4.54 
TCGA-BR-7901 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CG-4300 TCGA-CG-4305 
        0.95         0.69         0.36         0.30        20.02        15.95 
TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4469 
        1.02        52.96        54.05         4.01        29.98         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5721 TCGA-CG-5723 
       12.00         1.02         1.02         1.02         5.98        70.06 
TCGA-CG-5725 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
       15.02         4.01        55.04         7.99         8.65         3.58 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6524 TCGA-D7-6526 TCGA-D7-6527 
        4.54         9.80         8.19         0.69         6.61         4.14 
TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6875 
        3.65         4.04         2.93         4.27         0.62        72.23 
TCGA-FP-7829 TCGA-IP-7968 
        0.20         2.53 

$`AMP PEAK 20(13Q22.1) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 
        5.62         0.95         1.41         1.35         1.35         0.82 
TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6803 
        1.71         2.17         1.22         0.66         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7722 TCGA-BR-7851 
        0.26         1.22         0.46         0.13         0.16         0.99 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.69         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 
        0.26         1.18         1.55         1.48         0.76         0.82 
TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4437 TCGA-CG-4441 
        0.49         0.07         3.02        27.02         8.05        14.01 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5720 TCGA-CG-5722 
       18.94         1.02         1.02         6.94         0.99         0.95 
TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-6519 
       12.03        28.96        31.04        65.10        21.07        15.65 
TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6525 TCGA-D7-6528 TCGA-D7-6817 TCGA-EQ-8122 
        9.63         6.90         5.95         1.68         4.70         7.79 
TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 
        6.54         2.01         0.39         3.02         3.58        26.43 
TCGA-IN-7806 TCGA-IN-7808 
        6.87         3.55 

  AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE 
                          0.10                           0.07 
  AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE 
                         72.23                          65.10 
  AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE 
                         3.615                          1.350 
[1] "0.1 - 72.2 (3.6)" "0.1 - 65.1 (1.4)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 20(13Q22.1) MUTATED" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 20(13Q22.1) MUTATED"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 20(13Q22.1) WILD-TYPE" "AMP PEAK 20(13Q22.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 20(13Q22.1) WILD-TYPE"   "AMP PEAK 20(13Q22.1) MUTATED" 
[1] "hr=" "1.2"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(13Q22.1) MUTATED     19   46
  AMP PEAK 20(13Q22.1) WILD-TYPE   46   50
        clus
vv       AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  FEMALE                           19                             46
  MALE                             46                             50
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 20(13Q22.1) MUTATED                                       7
  AMP PEAK 20(13Q22.1) WILD-TYPE                                    12
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 20(13Q22.1) MUTATED                                                       33
  AMP PEAK 20(13Q22.1) WILD-TYPE                                                     46
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 20(13Q22.1) MUTATED                                           0
  AMP PEAK 20(13Q22.1) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 20(13Q22.1) MUTATED                                                   2
  AMP PEAK 20(13Q22.1) WILD-TYPE                                                 7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 20(13Q22.1) MUTATED                                                    2
  AMP PEAK 20(13Q22.1) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 20(13Q22.1) MUTATED                                                  6
  AMP PEAK 20(13Q22.1) WILD-TYPE                                                4
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 20(13Q22.1) MUTATED                                                                       14
  AMP PEAK 20(13Q22.1) WILD-TYPE                                                                     21
D20V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 20(13Q22.1) MUTATED    2 23 22 10
  AMP PEAK 20(13Q22.1) WILD-TYPE  4 30 37 23
D20V5, multiclass
    clus
vv   AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  T1                            2                              4
  T2                           23                             30
  T3                           22                             37
  T4                           10                             23
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 20(13Q22.1) MUTATED   17 23 11  8
  AMP PEAK 20(13Q22.1) WILD-TYPE 33 34 13 11
D20V6, multiclass
    clus
vv   AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  N0                           17                             33
  N1                           23                             34
  N2                           11                             13
  N3                            8                             11
                                vv
clus                             M0 M1 MX
  AMP PEAK 20(13Q22.1) MUTATED   57  6  2
  AMP PEAK 20(13Q22.1) WILD-TYPE 75 12  9
D20V7, multiclass
    clus
vv   AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  M0                           57                             75
  M1                            6                             12
  MX                            2                              9
                                vv
clus                              I II III IV
  AMP PEAK 20(13Q22.1) MUTATED    7 20  13 15
  AMP PEAK 20(13Q22.1) WILD-TYPE 18 23  35 14
D20V8, multiclass
     clus
vv    AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  I                              7                             18
  II                            20                             23
  III                           13                             35
  IV                            15                             14
D20V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(13Q22.1) MUTATED      2   63
  AMP PEAK 20(13Q22.1) WILD-TYPE    3   93
     clus
vv    AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  NO                             2                              3
  YES                           63                             93

Clustering(21) Variable = Amp Peak 21(15q26.1) mutation analysis
D21V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 21(15Q26.1) MUTATED   26  5
  AMP PEAK 21(15Q26.1) WILD-TYPE 82 11
  AMP PEAK 21(15Q26.1) MUTATED AMP PEAK 21(15Q26.1) WILD-TYPE 
                            31                             93 
  AMP PEAK 21(15Q26.1) MUTATED AMP PEAK 21(15Q26.1) WILD-TYPE 
                             5                             11 
$`AMP PEAK 21(15Q26.1) MUTATED`
TCGA-BR-6458 TCGA-BR-6709 TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7717 TCGA-CD-5799 
        1.35         1.22         1.48         1.05         0.69         0.69 
TCGA-CD-5800 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4474 TCGA-CG-5717 TCGA-CG-5719 
        0.36        47.05        19.07         1.02         6.94         1.02 
TCGA-CG-5724 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5579 
       12.03        31.04         4.01        55.04         7.99         4.54 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6525 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6818 
       15.65         9.63         5.95         1.68         3.65         4.04 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-7829 TCGA-IN-7808 
        4.27         0.62         7.79        72.23         0.20         3.55 
TCGA-IP-7968 
        2.53 

$`AMP PEAK 21(15Q26.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 
        0.46         1.25         0.13         0.82         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        0.99         0.95         0.69         0.16         1.08         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        1.32         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.26         0.43         0.26         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 
        0.76         0.82         0.49         0.30         0.07        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 
        3.02        27.02        15.95         1.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4455 TCGA-CG-4460 
       54.05         4.01        14.01        29.98        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4477 
        1.02         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-5716 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-5577 TCGA-D7-5578 
       15.02        28.96        65.10        21.07         8.65         3.58 
TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6526 TCGA-D7-6527 
        9.80         8.19         6.90         0.69         6.61         4.14 
TCGA-D7-6817 TCGA-D7-6820 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7916 
        4.70         2.93         6.54         2.01         0.39         3.02 
TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7806 
        3.58        26.43         6.87 

  AMP PEAK 21(15Q26.1) MUTATED AMP PEAK 21(15Q26.1) WILD-TYPE 
                          0.20                           0.07 
  AMP PEAK 21(15Q26.1) MUTATED AMP PEAK 21(15Q26.1) WILD-TYPE 
                         72.23                          70.06 
  AMP PEAK 21(15Q26.1) MUTATED AMP PEAK 21(15Q26.1) WILD-TYPE 
                          4.01                           1.25 
[1] "0.2 - 72.2 (4.0)" "0.1 - 70.1 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 21(15Q26.1) MUTATED"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 21(15Q26.1) MUTATED"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 21(15Q26.1) MUTATED"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 21(15Q26.1) MUTATED"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 21(15Q26.1) MUTATED"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "AMP PEAK 21(15Q26.1) MUTATED" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 21(15Q26.1) WILD-TYPE"   "AMP PEAK 21(15Q26.1) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"AMP PEAK 21(15Q26.1) WILD-TYPE" "AMP PEAK 21(15Q26.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 21(15Q26.1) MUTATED"   "AMP PEAK 21(15Q26.1) MUTATED" 
[1] "hr=" "1.2"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(15Q26.1) MUTATED     13   27
  AMP PEAK 21(15Q26.1) WILD-TYPE   52   69
        clus
vv       AMP PEAK 21(15Q26.1) MUTATED AMP PEAK 21(15Q26.1) WILD-TYPE
  FEMALE                           13                             52
  MALE                             27                             69
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 21(15Q26.1) MUTATED                                       7
  AMP PEAK 21(15Q26.1) WILD-TYPE                                    12
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 21(15Q26.1) MUTATED                                                       15
  AMP PEAK 21(15Q26.1) WILD-TYPE                                                     64
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 21(15Q26.1) MUTATED                                           0
  AMP PEAK 21(15Q26.1) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 21(15Q26.1) MUTATED                                                   4
  AMP PEAK 21(15Q26.1) WILD-TYPE                                                 5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 21(15Q26.1) MUTATED                                                    1
  AMP PEAK 21(15Q26.1) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 21(15Q26.1) MUTATED                                                  4
  AMP PEAK 21(15Q26.1) WILD-TYPE                                                6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 21(15Q26.1) MUTATED                                                                        7
  AMP PEAK 21(15Q26.1) WILD-TYPE                                                                     28
D21V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 21(15Q26.1) MUTATED    0 16 17  5
  AMP PEAK 21(15Q26.1) WILD-TYPE  6 37 42 28
D21V5, multiclass
    clus
vv   AMP PEAK 21(15Q26.1) MUTATED AMP PEAK 21(15Q26.1) WILD-TYPE
  T1                            0                              6
  T2                           16                             37
  T3                           17                             42
  T4                            5                             28
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 21(15Q26.1) MUTATED   10 13  8  7
  AMP PEAK 21(15Q26.1) WILD-TYPE 40 44 16 12
D21V6, multiclass
    clus
vv   AMP PEAK 21(15Q26.1) MUTATED AMP PEAK 21(15Q26.1) WILD-TYPE
  N0                           10                             40
  N1                           13                             44
  N2                            8                             16
  N3                            7                             12
                                vv
clus                              M0  M1  MX
  AMP PEAK 21(15Q26.1) MUTATED    31   6   3
  AMP PEAK 21(15Q26.1) WILD-TYPE 101  12   8
D21V7, multiclass
    clus
vv   AMP PEAK 21(15Q26.1) MUTATED AMP PEAK 21(15Q26.1) WILD-TYPE
  M0                           31                            101
  M1                            6                             12
  MX                            3                              8
                                vv
clus                              I II III IV
  AMP PEAK 21(15Q26.1) MUTATED    4 12  12  9
  AMP PEAK 21(15Q26.1) WILD-TYPE 21 31  36 20
D21V8, multiclass
     clus
vv    AMP PEAK 21(15Q26.1) MUTATED AMP PEAK 21(15Q26.1) WILD-TYPE
  I                              4                             21
  II                            12                             31
  III                           12                             36
  IV                             9                             20
D21V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(15Q26.1) MUTATED      2   38
  AMP PEAK 21(15Q26.1) WILD-TYPE    3  118
     clus
vv    AMP PEAK 21(15Q26.1) MUTATED AMP PEAK 21(15Q26.1) WILD-TYPE
  NO                             2                              3
  YES                           38                            118

Clustering(22) Variable = Amp Peak 22(17q12) mutation analysis
D22V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 22(17Q12) MUTATED   30  6
  AMP PEAK 22(17Q12) WILD-TYPE 78 10
  AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE 
                          36                           88 
  AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE 
                           6                           10 
$`AMP PEAK 22(17Q12) MUTATED`
TCGA-B7-5818 TCGA-BR-6565 TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7717 TCGA-CD-5799 
        0.10         0.62         1.48         1.05         0.69         0.69 
TCGA-CD-5800 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4436 TCGA-CG-4440 TCGA-CG-4444 
        0.36        20.02         3.02        52.96         4.01        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-5716 TCGA-CG-5719 
       19.07        12.03        21.99        18.94         1.02         1.02 
TCGA-CG-5722 TCGA-CG-5724 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-6521 TCGA-D7-6525 
        0.95        12.03         4.01        55.04         8.19         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 
        6.61         4.14         3.65         4.70         2.93         4.27 
TCGA-EQ-5647 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 TCGA-HJ-7597 TCGA-IP-7968 
        0.62        72.23         0.39         3.02        26.43         2.53 

$`AMP PEAK 22(17Q12) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 
        5.62         0.95         1.41         1.35         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 
        0.46         1.25         0.13         0.82         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        0.99         0.95         0.69         0.16         1.08         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        1.32         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.26         0.43         0.26         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4304 
        0.76         0.82         0.49         0.30         0.07        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4443 
       15.95         1.02         8.05        54.05        14.01        29.98 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 
        1.02         8.98         7.07        12.00         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5725 
        6.94         1.02         0.99         5.98        70.06        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       28.96        31.04        65.10        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 
        3.58         4.54         9.80        15.65         9.63         6.90 
TCGA-D7-6524 TCGA-D7-6528 TCGA-D7-6818 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 
        0.69         1.68         4.04         7.79         6.54         2.01 
TCGA-FP-7829 TCGA-FP-7998 TCGA-IN-7806 TCGA-IN-7808 
        0.20         3.58         6.87         3.55 

  AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE 
                        0.10                         0.07 
  AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE 
                       72.23                        70.06 
  AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE 
                       4.010                        1.235 
[1] "0.1 - 72.2 (4.0)" "0.1 - 70.1 (1.2)"
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-FP-7735                   TCGA-FP-7829 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-FP-7735                   TCGA-FP-7829 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 22(17Q12) MUTATED"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 22(17Q12) WILD-TYPE" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
                  TCGA-FP-7735                   TCGA-FP-7829 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
  "AMP PEAK 22(17Q12) MUTATED" "AMP PEAK 22(17Q12) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"AMP PEAK 22(17Q12) WILD-TYPE"   "AMP PEAK 22(17Q12) MUTATED" 
[1] "hr=" "1.3"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 22(17Q12) MUTATED     13   30
  AMP PEAK 22(17Q12) WILD-TYPE   52   66
        clus
vv       AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  FEMALE                         13                           52
  MALE                           30                           66
                              vv
clus                           STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 22(17Q12) MUTATED                                       5
  AMP PEAK 22(17Q12) WILD-TYPE                                    14
                              vv
clus                           STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 22(17Q12) MUTATED                                                       17
  AMP PEAK 22(17Q12) WILD-TYPE                                                     62
                              vv
clus                           STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 22(17Q12) MUTATED                                           1
  AMP PEAK 22(17Q12) WILD-TYPE                                         0
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 22(17Q12) MUTATED                                                   2
  AMP PEAK 22(17Q12) WILD-TYPE                                                 7
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 22(17Q12) MUTATED                                                    2
  AMP PEAK 22(17Q12) WILD-TYPE                                                  1
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 22(17Q12) MUTATED                                                  5
  AMP PEAK 22(17Q12) WILD-TYPE                                                5
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 22(17Q12) MUTATED                                                                        9
  AMP PEAK 22(17Q12) WILD-TYPE                                                                     26
D22V4, multiclass
                              vv
clus                           T1 T2 T3 T4
  AMP PEAK 22(17Q12) MUTATED    0 20 14  7
  AMP PEAK 22(17Q12) WILD-TYPE  6 33 45 26
D22V5, multiclass
    clus
vv   AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  T1                          0                            6
  T2                         20                           33
  T3                         14                           45
  T4                          7                           26
                              vv
clus                           N0 N1 N2 N3
  AMP PEAK 22(17Q12) MUTATED   14 11  9  6
  AMP PEAK 22(17Q12) WILD-TYPE 36 46 15 13
D22V6, multiclass
    clus
vv   AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  N0                         14                           36
  N1                         11                           46
  N2                          9                           15
  N3                          6                           13
                              vv
clus                            M0  M1  MX
  AMP PEAK 22(17Q12) MUTATED    28   9   6
  AMP PEAK 22(17Q12) WILD-TYPE 104   9   5
D22V7, multiclass
    clus
vv   AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  M0                         28                          104
  M1                          9                            9
  MX                          6                            5
                              vv
clus                            I II III IV
  AMP PEAK 22(17Q12) MUTATED    8 11  10 11
  AMP PEAK 22(17Q12) WILD-TYPE 17 32  38 18
D22V8, multiclass
     clus
vv    AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  I                            8                           17
  II                          11                           32
  III                         10                           38
  IV                          11                           18
D22V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 22(17Q12) MUTATED      2   41
  AMP PEAK 22(17Q12) WILD-TYPE    3  115
     clus
vv    AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  NO                           2                            3
  YES                         41                          115

Clustering(23) Variable = Amp Peak 23(18q11.2) mutation analysis
D23V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 23(18Q11.2) MUTATED   22  8
  AMP PEAK 23(18Q11.2) WILD-TYPE 86  8
  AMP PEAK 23(18Q11.2) MUTATED AMP PEAK 23(18Q11.2) WILD-TYPE 
                            30                             94 
  AMP PEAK 23(18Q11.2) MUTATED AMP PEAK 23(18Q11.2) WILD-TYPE 
                             8                              8 
$`AMP PEAK 23(18Q11.2) MUTATED`
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-7715 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7901 
        0.82         0.62         1.05         0.16         4.54         0.95 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4440 
        0.82         0.69         0.36        20.02         3.02         4.01 
TCGA-CG-4441 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
       14.01        19.07        21.99         7.07        12.00         1.02 
TCGA-CG-5724 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 
       12.03         4.54         9.80         8.19         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6817 TCGA-EQ-5647 TCGA-F1-6875 TCGA-HJ-7597 
        4.14         1.68         4.70         0.62        72.23        26.43 

$`AMP PEAK 23(18Q11.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.85         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7717 
        1.48         0.46         1.25         0.13         0.82         0.69 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.99         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.49         0.30         0.07        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4455 
       52.96         8.05        54.05        29.98        47.05        12.03 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        1.02         8.98        18.94         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6519 TCGA-D7-6520 
       21.07         7.99         8.65         3.58        15.65         9.63 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        6.90         0.69         3.65         4.04         2.93         4.27 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 
        7.79         6.54         2.01         0.39         0.20         3.02 
TCGA-FP-7998 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        3.58         6.87         3.55         2.53 

  AMP PEAK 23(18Q11.2) MUTATED AMP PEAK 23(18Q11.2) WILD-TYPE 
                          0.16                           0.07 
  AMP PEAK 23(18Q11.2) MUTATED AMP PEAK 23(18Q11.2) WILD-TYPE 
                         72.23                          70.06 
  AMP PEAK 23(18Q11.2) MUTATED AMP PEAK 23(18Q11.2) WILD-TYPE 
                         4.540                          1.335 
[1] "0.2 - 72.2 (4.5)" "0.1 - 70.1 (1.3)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 23(18Q11.2) MUTATED"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"AMP PEAK 23(18Q11.2) WILD-TYPE"   "AMP PEAK 23(18Q11.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 23(18Q11.2) MUTATED" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"AMP PEAK 23(18Q11.2) WILD-TYPE" "AMP PEAK 23(18Q11.2) WILD-TYPE" 
[1] "hr=" "2.5"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(18Q11.2) MUTATED     14   30
  AMP PEAK 23(18Q11.2) WILD-TYPE   51   66
        clus
vv       AMP PEAK 23(18Q11.2) MUTATED AMP PEAK 23(18Q11.2) WILD-TYPE
  FEMALE                           14                             51
  MALE                             30                             66
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 23(18Q11.2) MUTATED                                       6
  AMP PEAK 23(18Q11.2) WILD-TYPE                                    13
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 23(18Q11.2) MUTATED                                                       22
  AMP PEAK 23(18Q11.2) WILD-TYPE                                                     57
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 23(18Q11.2) MUTATED                                           1
  AMP PEAK 23(18Q11.2) WILD-TYPE                                         0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 23(18Q11.2) MUTATED                                                   4
  AMP PEAK 23(18Q11.2) WILD-TYPE                                                 5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 23(18Q11.2) MUTATED                                                    2
  AMP PEAK 23(18Q11.2) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 23(18Q11.2) MUTATED                                                  3
  AMP PEAK 23(18Q11.2) WILD-TYPE                                                7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 23(18Q11.2) MUTATED                                                                        5
  AMP PEAK 23(18Q11.2) WILD-TYPE                                                                     30
D23V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 23(18Q11.2) MUTATED    0 13 19  6
  AMP PEAK 23(18Q11.2) WILD-TYPE  6 40 40 27
D23V5, multiclass
    clus
vv   AMP PEAK 23(18Q11.2) MUTATED AMP PEAK 23(18Q11.2) WILD-TYPE
  T1                            0                              6
  T2                           13                             40
  T3                           19                             40
  T4                            6                             27
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 23(18Q11.2) MUTATED    9 15  8  8
  AMP PEAK 23(18Q11.2) WILD-TYPE 41 42 16 11
D23V6, multiclass
    clus
vv   AMP PEAK 23(18Q11.2) MUTATED AMP PEAK 23(18Q11.2) WILD-TYPE
  N0                            9                             41
  N1                           15                             42
  N2                            8                             16
  N3                            8                             11
                                vv
clus                             M0 M1 MX
  AMP PEAK 23(18Q11.2) MUTATED   34  6  4
  AMP PEAK 23(18Q11.2) WILD-TYPE 98 12  7
D23V7, multiclass
    clus
vv   AMP PEAK 23(18Q11.2) MUTATED AMP PEAK 23(18Q11.2) WILD-TYPE
  M0                           34                             98
  M1                            6                             12
  MX                            4                              7
                                vv
clus                              I II III IV
  AMP PEAK 23(18Q11.2) MUTATED    4 10  13 10
  AMP PEAK 23(18Q11.2) WILD-TYPE 21 33  35 19
D23V8, multiclass
     clus
vv    AMP PEAK 23(18Q11.2) MUTATED AMP PEAK 23(18Q11.2) WILD-TYPE
  I                              4                             21
  II                            10                             33
  III                           13                             35
  IV                            10                             19
D23V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(18Q11.2) MUTATED      3   41
  AMP PEAK 23(18Q11.2) WILD-TYPE    2  115
     clus
vv    AMP PEAK 23(18Q11.2) MUTATED AMP PEAK 23(18Q11.2) WILD-TYPE
  NO                             3                              2
  YES                           41                            115

Clustering(24) Variable = Amp Peak 24(19q12) mutation analysis
D24V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 24(19Q12) MUTATED   29  3
  AMP PEAK 24(19Q12) WILD-TYPE 79 13
  AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE 
                          32                           92 
  AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE 
                           3                           13 
$`AMP PEAK 24(19Q12) MUTATED`
TCGA-BR-6458 TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-7901 
        1.35         1.48         1.05         0.82         4.54         0.95 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CG-4438 TCGA-CG-4444 TCGA-CG-4449 
        0.36         0.49         0.30        54.05        47.05        19.07 
TCGA-CG-4460 TCGA-CG-4474 TCGA-CG-5722 TCGA-CG-5730 TCGA-D7-5577 TCGA-D7-5578 
       21.99         1.02         0.95         4.01         8.65         3.58 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6526 TCGA-D7-6527 
        4.54         9.80         9.63         8.19         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6875 TCGA-FP-7735 
        1.68         4.04         4.27         0.62        72.23         0.39 
TCGA-FP-7916 TCGA-IN-7808 
        3.02         3.55 

$`AMP PEAK 24(19Q12) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 
        1.22         0.46         1.25         0.13         0.69         0.16 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.99         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
        0.82         0.69         0.07        20.02         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4441 
       15.95         1.02        52.96         8.05         4.01        14.01 
TCGA-CG-4443 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       29.98        12.03         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
       12.00         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        0.99         5.98        70.06        12.03        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-6519 
       31.04        65.10        55.04        21.07         7.99        15.65 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 
        6.90         0.69         5.95         3.65         4.70         2.93 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7829 TCGA-FP-7998 TCGA-HJ-7597 
        7.79         6.54         2.01         0.20         3.58        26.43 
TCGA-IN-7806 TCGA-IP-7968 
        6.87         2.53 

  AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE 
                        0.30                         0.07 
  AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE 
                       72.23                        70.06 
  AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE 
                       3.795                        1.285 
[1] "0.3 - 72.2 (3.8)" "0.1 - 70.1 (1.3)"
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CD-5802                   TCGA-CD-5803 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-5578                   TCGA-D7-5579 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6518                   TCGA-D7-6519 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-FP-7735                   TCGA-FP-7829 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CD-5802                   TCGA-CD-5803 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-5578                   TCGA-D7-5579 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6518                   TCGA-D7-6519 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-FP-7735                   TCGA-FP-7829 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CD-5802                   TCGA-CD-5803 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4304                   TCGA-CG-4305 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-5578                   TCGA-D7-5579 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6518                   TCGA-D7-6519 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "AMP PEAK 24(19Q12) MUTATED"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"AMP PEAK 24(19Q12) WILD-TYPE"   "AMP PEAK 24(19Q12) MUTATED" 
                  TCGA-FP-7735                   TCGA-FP-7829 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"AMP PEAK 24(19Q12) WILD-TYPE" "AMP PEAK 24(19Q12) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
  "AMP PEAK 24(19Q12) MUTATED" "AMP PEAK 24(19Q12) WILD-TYPE" 
[1] "hr=" "2.5"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 24(19Q12) MUTATED     16   28
  AMP PEAK 24(19Q12) WILD-TYPE   49   68
        clus
vv       AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  FEMALE                         16                           49
  MALE                           28                           68
                              vv
clus                           STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 24(19Q12) MUTATED                                       6
  AMP PEAK 24(19Q12) WILD-TYPE                                    13
                              vv
clus                           STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 24(19Q12) MUTATED                                                       21
  AMP PEAK 24(19Q12) WILD-TYPE                                                     58
                              vv
clus                           STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 24(19Q12) MUTATED                                           0
  AMP PEAK 24(19Q12) WILD-TYPE                                         1
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 24(19Q12) MUTATED                                                   3
  AMP PEAK 24(19Q12) WILD-TYPE                                                 6
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 24(19Q12) MUTATED                                                    2
  AMP PEAK 24(19Q12) WILD-TYPE                                                  1
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 24(19Q12) MUTATED                                                  6
  AMP PEAK 24(19Q12) WILD-TYPE                                                4
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 24(19Q12) MUTATED                                                                        4
  AMP PEAK 24(19Q12) WILD-TYPE                                                                     31
D24V4, multiclass
                              vv
clus                           T1 T2 T3 T4
  AMP PEAK 24(19Q12) MUTATED    0 16 19  6
  AMP PEAK 24(19Q12) WILD-TYPE  6 37 40 27
D24V5, multiclass
    clus
vv   AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  T1                          0                            6
  T2                         16                           37
  T3                         19                           40
  T4                          6                           27
                              vv
clus                           N0 N1 N2 N3
  AMP PEAK 24(19Q12) MUTATED   10 13 10  7
  AMP PEAK 24(19Q12) WILD-TYPE 40 44 14 12
D24V6, multiclass
    clus
vv   AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  N0                         10                           40
  N1                         13                           44
  N2                         10                           14
  N3                          7                           12
                              vv
clus                           M0 M1 MX
  AMP PEAK 24(19Q12) MUTATED   34  6  4
  AMP PEAK 24(19Q12) WILD-TYPE 98 12  7
D24V7, multiclass
    clus
vv   AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  M0                         34                           98
  M1                          6                           12
  MX                          4                            7
                              vv
clus                            I II III IV
  AMP PEAK 24(19Q12) MUTATED    5 13  11 10
  AMP PEAK 24(19Q12) WILD-TYPE 20 30  37 19
D24V8, multiclass
     clus
vv    AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  I                            5                           20
  II                          13                           30
  III                         11                           37
  IV                          10                           19
D24V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 24(19Q12) MUTATED      4   40
  AMP PEAK 24(19Q12) WILD-TYPE    1  116
     clus
vv    AMP PEAK 24(19Q12) MUTATED AMP PEAK 24(19Q12) WILD-TYPE
  NO                           4                            1
  YES                         40                          116

Clustering(25) Variable = Amp Peak 25(20q13.2) mutation analysis
D25V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 25(20Q13.2) MUTATED   64 11
  AMP PEAK 25(20Q13.2) WILD-TYPE 44  5
  AMP PEAK 25(20Q13.2) MUTATED AMP PEAK 25(20Q13.2) WILD-TYPE 
                            75                             49 
  AMP PEAK 25(20Q13.2) MUTATED AMP PEAK 25(20Q13.2) WILD-TYPE 
                            11                              5 
$`AMP PEAK 25(20Q13.2) MUTATED`
TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 
        1.41         1.35         1.35         0.85         0.82         0.62 
TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6801 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        2.17         0.99         1.12         0.26         1.22         1.48 
TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 
        1.25         1.05         0.82         0.69         0.16         4.54 
TCGA-BR-7901 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4301 
        0.95         0.69         0.36         0.49        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
       27.02        15.95        52.96         8.05        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5722 
       18.94         7.07        12.00         1.02         1.02         0.95 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 
       12.03        15.02        28.96        31.04         4.01        55.04 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        9.63         8.19         5.95         6.61         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6874 
        3.65         4.70         2.93         4.27         0.62         2.01 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 
       72.23         0.39         0.20         3.02         3.58        26.43 
TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        6.87         3.55         2.53 

$`AMP PEAK 25(20Q13.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6709 
        5.62         0.10         0.95         0.62         1.71         1.22 
TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7851 
        0.66         0.76         0.66         0.46         0.13         0.99 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.69         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 
        0.26         1.18         1.55         1.48         0.76         0.82 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4306 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4474 
        0.30         0.07         1.02         1.02         8.98         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5723 
        1.02         1.02         6.94         0.99         5.98        70.06 
TCGA-CG-5728 TCGA-CG-5733 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6818 TCGA-EQ-8122 
       65.10        21.07         6.90         0.69         4.04         7.79 
TCGA-F1-6177 
        6.54 

  AMP PEAK 25(20Q13.2) MUTATED AMP PEAK 25(20Q13.2) WILD-TYPE 
                          0.16                           0.07 
  AMP PEAK 25(20Q13.2) MUTATED AMP PEAK 25(20Q13.2) WILD-TYPE 
                         72.23                          70.06 
  AMP PEAK 25(20Q13.2) MUTATED AMP PEAK 25(20Q13.2) WILD-TYPE 
                          4.01                           0.99 
[1] "0.2 - 72.2 (4.0)" "0.1 - 70.1 (1.0)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "AMP PEAK 25(20Q13.2) MUTATED" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"AMP PEAK 25(20Q13.2) WILD-TYPE"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"AMP PEAK 25(20Q13.2) WILD-TYPE" "AMP PEAK 25(20Q13.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "AMP PEAK 25(20Q13.2) MUTATED"   "AMP PEAK 25(20Q13.2) MUTATED" 
[1] "hr=" "2.1"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 25(20Q13.2) MUTATED     31   68
  AMP PEAK 25(20Q13.2) WILD-TYPE   34   28
        clus
vv       AMP PEAK 25(20Q13.2) MUTATED AMP PEAK 25(20Q13.2) WILD-TYPE
  FEMALE                           31                             34
  MALE                             68                             28
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 25(20Q13.2) MUTATED                                      10
  AMP PEAK 25(20Q13.2) WILD-TYPE                                     9
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 25(20Q13.2) MUTATED                                                       47
  AMP PEAK 25(20Q13.2) WILD-TYPE                                                     32
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 25(20Q13.2) MUTATED                                           1
  AMP PEAK 25(20Q13.2) WILD-TYPE                                         0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 25(20Q13.2) MUTATED                                                   5
  AMP PEAK 25(20Q13.2) WILD-TYPE                                                 4
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 25(20Q13.2) MUTATED                                                    2
  AMP PEAK 25(20Q13.2) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 25(20Q13.2) MUTATED                                                 10
  AMP PEAK 25(20Q13.2) WILD-TYPE                                                0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 25(20Q13.2) MUTATED                                                                       21
  AMP PEAK 25(20Q13.2) WILD-TYPE                                                                     14
D25V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  AMP PEAK 25(20Q13.2) MUTATED    3 37 41 12
  AMP PEAK 25(20Q13.2) WILD-TYPE  3 16 18 21
D25V5, multiclass
    clus
vv   AMP PEAK 25(20Q13.2) MUTATED AMP PEAK 25(20Q13.2) WILD-TYPE
  T1                            3                              3
  T2                           37                             16
  T3                           41                             18
  T4                           12                             21
                                vv
clus                             N0 N1 N2 N3
  AMP PEAK 25(20Q13.2) MUTATED   26 37 15 13
  AMP PEAK 25(20Q13.2) WILD-TYPE 24 20  9  6
D25V6, multiclass
    clus
vv   AMP PEAK 25(20Q13.2) MUTATED AMP PEAK 25(20Q13.2) WILD-TYPE
  N0                           26                             24
  N1                           37                             20
  N2                           15                              9
  N3                           13                              6
                                vv
clus                             M0 M1 MX
  AMP PEAK 25(20Q13.2) MUTATED   81 10  8
  AMP PEAK 25(20Q13.2) WILD-TYPE 51  8  3
D25V7, multiclass
    clus
vv   AMP PEAK 25(20Q13.2) MUTATED AMP PEAK 25(20Q13.2) WILD-TYPE
  M0                           81                             51
  M1                           10                              8
  MX                            8                              3
                                vv
clus                              I II III IV
  AMP PEAK 25(20Q13.2) MUTATED   14 25  33 17
  AMP PEAK 25(20Q13.2) WILD-TYPE 11 18  15 12
D25V8, multiclass
     clus
vv    AMP PEAK 25(20Q13.2) MUTATED AMP PEAK 25(20Q13.2) WILD-TYPE
  I                             14                             11
  II                            25                             18
  III                           33                             15
  IV                            17                             12
D25V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 25(20Q13.2) MUTATED      3   96
  AMP PEAK 25(20Q13.2) WILD-TYPE    2   60
     clus
vv    AMP PEAK 25(20Q13.2) MUTATED AMP PEAK 25(20Q13.2) WILD-TYPE
  NO                             3                              2
  YES                           96                             60

Clustering(26) Variable = Amp Peak 26(Xq27.3) mutation analysis
D26V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 26(XQ27.3) MUTATED   18  6
  AMP PEAK 26(XQ27.3) WILD-TYPE 90 10
  AMP PEAK 26(XQ27.3) MUTATED AMP PEAK 26(XQ27.3) WILD-TYPE 
                           24                           100 
  AMP PEAK 26(XQ27.3) MUTATED AMP PEAK 26(XQ27.3) WILD-TYPE 
                            6                            10 
$`AMP PEAK 26(XQ27.3) MUTATED`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6801 TCGA-BR-7704 TCGA-BR-7717 TCGA-CG-4300 
        0.10         1.35         1.12         1.25         0.69        20.02 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4460 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5720 
        8.05        54.05        21.99         7.07        12.00         0.99 
TCGA-CG-5727 TCGA-CG-5734 TCGA-D7-5579 TCGA-D7-6521 TCGA-D7-6526 TCGA-D7-6528 
       31.04         7.99         4.54         8.19         6.61         1.68 
TCGA-D7-6815 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6875 TCGA-FP-7735 TCGA-IN-7808 
        3.65         4.27         0.62        72.23         0.39         3.55 

$`AMP PEAK 26(XQ27.3) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.95         1.41         1.35         0.85         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        0.66         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 
        0.46         0.13         1.05         0.82         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        0.99         0.95         0.69         0.16         1.08         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        1.32         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.26         0.43         0.26         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 
        0.76         0.82         0.69         0.36         0.49         0.30 
TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
        0.07         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
        1.02         8.98        18.94         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        6.94         1.02         1.02         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       12.03        15.02        28.96        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
       21.07         8.65         3.58         9.80        15.65         9.63 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6817 TCGA-D7-6818 
        6.90         0.69         5.95         4.14         4.70         4.04 
TCGA-D7-6820 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7829 TCGA-FP-7916 
        2.93         7.79         6.54         2.01         0.20         3.02 
TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
        3.58        26.43         6.87         2.53 

  AMP PEAK 26(XQ27.3) MUTATED AMP PEAK 26(XQ27.3) WILD-TYPE 
                         0.10                          0.07 
  AMP PEAK 26(XQ27.3) MUTATED AMP PEAK 26(XQ27.3) WILD-TYPE 
                        72.23                         70.06 
  AMP PEAK 26(XQ27.3) MUTATED AMP PEAK 26(XQ27.3) WILD-TYPE 
                        4.405                         1.335 
[1] "0.1 - 72.2 (4.4)" "0.1 - 70.1 (1.3)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK 26(XQ27.3) MUTATED"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 26(XQ27.3) MUTATED"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 26(XQ27.3) MUTATED"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK 26(XQ27.3) MUTATED"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 26(XQ27.3) MUTATED"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 26(XQ27.3) MUTATED"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "AMP PEAK 26(XQ27.3) MUTATED"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "AMP PEAK 26(XQ27.3) MUTATED"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "AMP PEAK 26(XQ27.3) MUTATED"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"AMP PEAK 26(XQ27.3) WILD-TYPE"   "AMP PEAK 26(XQ27.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"AMP PEAK 26(XQ27.3) WILD-TYPE" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "AMP PEAK 26(XQ27.3) MUTATED" "AMP PEAK 26(XQ27.3) WILD-TYPE" 
[1] "hr=" "1.4"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 26(XQ27.3) MUTATED     12   20
  AMP PEAK 26(XQ27.3) WILD-TYPE   53   76
        clus
vv       AMP PEAK 26(XQ27.3) MUTATED AMP PEAK 26(XQ27.3) WILD-TYPE
  FEMALE                          12                            53
  MALE                            20                            76
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  AMP PEAK 26(XQ27.3) MUTATED                                       3
  AMP PEAK 26(XQ27.3) WILD-TYPE                                    16
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 26(XQ27.3) MUTATED                                                       14
  AMP PEAK 26(XQ27.3) WILD-TYPE                                                     65
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  AMP PEAK 26(XQ27.3) MUTATED                                           0
  AMP PEAK 26(XQ27.3) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  AMP PEAK 26(XQ27.3) MUTATED                                                   2
  AMP PEAK 26(XQ27.3) WILD-TYPE                                                 7
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  AMP PEAK 26(XQ27.3) MUTATED                                                    0
  AMP PEAK 26(XQ27.3) WILD-TYPE                                                  3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  AMP PEAK 26(XQ27.3) MUTATED                                                  4
  AMP PEAK 26(XQ27.3) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  AMP PEAK 26(XQ27.3) MUTATED                                                                        8
  AMP PEAK 26(XQ27.3) WILD-TYPE                                                                     27
D26V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  AMP PEAK 26(XQ27.3) MUTATED    1 11 11  7
  AMP PEAK 26(XQ27.3) WILD-TYPE  5 42 48 26
D26V5, multiclass
    clus
vv   AMP PEAK 26(XQ27.3) MUTATED AMP PEAK 26(XQ27.3) WILD-TYPE
  T1                           1                             5
  T2                          11                            42
  T3                          11                            48
  T4                           7                            26
                               vv
clus                            N0 N1 N2 N3
  AMP PEAK 26(XQ27.3) MUTATED   10 10  7  4
  AMP PEAK 26(XQ27.3) WILD-TYPE 40 47 17 15
D26V6, multiclass
    clus
vv   AMP PEAK 26(XQ27.3) MUTATED AMP PEAK 26(XQ27.3) WILD-TYPE
  N0                          10                            40
  N1                          10                            47
  N2                           7                            17
  N3                           4                            15
                               vv
clus                             M0  M1  MX
  AMP PEAK 26(XQ27.3) MUTATED    28   3   1
  AMP PEAK 26(XQ27.3) WILD-TYPE 104  15  10
D26V7, multiclass
    clus
vv   AMP PEAK 26(XQ27.3) MUTATED AMP PEAK 26(XQ27.3) WILD-TYPE
  M0                          28                           104
  M1                           3                            15
  MX                           1                            10
                               vv
clus                             I II III IV
  AMP PEAK 26(XQ27.3) MUTATED    7  5   9  8
  AMP PEAK 26(XQ27.3) WILD-TYPE 18 38  39 21
D26V8, multiclass
     clus
vv    AMP PEAK 26(XQ27.3) MUTATED AMP PEAK 26(XQ27.3) WILD-TYPE
  I                             7                            18
  II                            5                            38
  III                           9                            39
  IV                            8                            21
D26V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 26(XQ27.3) MUTATED      1   31
  AMP PEAK 26(XQ27.3) WILD-TYPE    4  125
     clus
vv    AMP PEAK 26(XQ27.3) MUTATED AMP PEAK 26(XQ27.3) WILD-TYPE
  NO                            1                             4
  YES                          31                           125

Clustering(27) Variable = Del Peak  1(1p36.11) mutation analysis
D27V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.11) MUTATED   23  5
  DEL PEAK  1(1P36.11) WILD-TYPE 85 11
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                            28                             96 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                             5                             11 
$`DEL PEAK  1(1P36.11) MUTATED`
TCGA-B7-5816 TCGA-BR-6458 TCGA-BR-6565 TCGA-CD-5799 TCGA-CG-4300 TCGA-CG-4301 
        5.62         1.35         0.62         0.69        20.02         3.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
       52.96         8.05        54.05        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5725 
       19.07         7.07         1.02         1.02        12.03        15.02 
TCGA-CG-5730 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        4.01         4.54        15.65         6.61         4.14         1.68 
TCGA-D7-6817 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 
        4.70         4.27         0.62         7.79 

$`DEL PEAK  1(1P36.11) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 
        0.10         0.95         1.41         1.35         0.85         0.82 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        0.46         1.25         0.13         1.05         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 
        0.16         4.54         0.99         0.95         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 
        1.55         1.48         0.76         0.82         0.36         0.49 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4440 
        0.30         0.07        27.02        15.95         1.02         4.01 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4472 
       12.03        21.99         1.02         8.98        18.94        12.00 
TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 
        1.02         1.02         6.94         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 
        0.95        70.06        28.96        31.04        65.10        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6520 
       21.07         7.99         8.65         3.58         9.80         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6815 TCGA-D7-6818 
        8.19         6.90         0.69         5.95         3.65         4.04 
TCGA-D7-6820 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
        2.93         6.54         2.01        72.23         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        3.02         3.58        26.43         6.87         3.55         2.53 

  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                          0.62                           0.07 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                         54.05                          72.23 
  DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE 
                         6.115                          1.200 
[1] "0.6 - 54.0 (6.1)" "0.1 - 72.2 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK  1(1P36.11) WILD-TYPE"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK  1(1P36.11) MUTATED"   "DEL PEAK  1(1P36.11) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK  1(1P36.11) MUTATED" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK  1(1P36.11) WILD-TYPE" "DEL PEAK  1(1P36.11) WILD-TYPE" 
[1] "hr=" "1.1"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) MUTATED     14   26
  DEL PEAK  1(1P36.11) WILD-TYPE   51   70
        clus
vv       DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  FEMALE                           14                             51
  MALE                             26                             70
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  1(1P36.11) MUTATED                                       3
  DEL PEAK  1(1P36.11) WILD-TYPE                                    16
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  1(1P36.11) MUTATED                                                       16
  DEL PEAK  1(1P36.11) WILD-TYPE                                                     63
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK  1(1P36.11) MUTATED                                           0
  DEL PEAK  1(1P36.11) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  1(1P36.11) MUTATED                                                   3
  DEL PEAK  1(1P36.11) WILD-TYPE                                                 6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  1(1P36.11) MUTATED                                                    1
  DEL PEAK  1(1P36.11) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  1(1P36.11) MUTATED                                                  5
  DEL PEAK  1(1P36.11) WILD-TYPE                                                5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  1(1P36.11) MUTATED                                                                       11
  DEL PEAK  1(1P36.11) WILD-TYPE                                                                     24
D27V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK  1(1P36.11) MUTATED    1 18 12  5
  DEL PEAK  1(1P36.11) WILD-TYPE  5 35 47 28
D27V5, multiclass
    clus
vv   DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  T1                            1                              5
  T2                           18                             35
  T3                           12                             47
  T4                            5                             28
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK  1(1P36.11) MUTATED   11 13  6  5
  DEL PEAK  1(1P36.11) WILD-TYPE 39 44 18 14
D27V6, multiclass
    clus
vv   DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  N0                           11                             39
  N1                           13                             44
  N2                            6                             18
  N3                            5                             14
                                vv
clus                             M0 M1 MX
  DEL PEAK  1(1P36.11) MUTATED   33  5  2
  DEL PEAK  1(1P36.11) WILD-TYPE 99 13  9
D27V7, multiclass
    clus
vv   DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  M0                           33                             99
  M1                            5                             13
  MX                            2                              9
                                vv
clus                              I II III IV
  DEL PEAK  1(1P36.11) MUTATED    7 10   9  8
  DEL PEAK  1(1P36.11) WILD-TYPE 18 33  39 21
D27V8, multiclass
     clus
vv    DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  I                              7                             18
  II                            10                             33
  III                            9                             39
  IV                             8                             21
D27V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.11) MUTATED      2   38
  DEL PEAK  1(1P36.11) WILD-TYPE    3  118
     clus
vv    DEL PEAK  1(1P36.11) MUTATED DEL PEAK  1(1P36.11) WILD-TYPE
  NO                             2                              3
  YES                           38                            118

Clustering(28) Variable = Del Peak  2(1p31.1) mutation analysis
D28V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  2(1P31.1) MUTATED   18  2
  DEL PEAK  2(1P31.1) WILD-TYPE 90 14
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                           20                           104 
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                            2                            14 
$`DEL PEAK  2(1P31.1) MUTATED`
TCGA-BR-6565 TCGA-BR-7703 TCGA-CD-5799 TCGA-CD-5802 TCGA-CG-4300 TCGA-CG-4301 
        0.62         0.46         0.69         0.30        20.02         3.02 
TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5730 TCGA-D7-5579 
       52.96        54.05         1.02        12.03         4.01         4.54 
TCGA-D7-6519 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6822 TCGA-EQ-5647 
       15.65         6.61         4.14         1.68         4.27         0.62 
TCGA-EQ-8122 TCGA-FP-7829 
        7.79         0.20 

$`DEL PEAK  2(1P31.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.85         0.82         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.22         1.48         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
        0.69         0.16         4.54         0.99         0.95         0.69 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.16         1.08         0.82         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.49         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5800 
        1.18         1.55         1.48         0.76         0.82         0.36 
TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 
        0.49         0.07        27.02        15.95         1.02         8.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       21.99         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 
        1.02         1.02         1.02         6.94         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
        5.98         0.95        70.06        15.02        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
       65.10        55.04        21.07         7.99         8.65         3.58 
TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
        9.80         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-F1-6177 TCGA-F1-6874 
        3.65         4.70         4.04         2.93         6.54         2.01 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7806 
       72.23         0.39         3.02         3.58        26.43         6.87 
TCGA-IN-7808 TCGA-IP-7968 
        3.55         2.53 

  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                         0.20                          0.07 
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                        54.05                         72.23 
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                        4.075                         1.380 
[1] "0.2 - 54.0 (4.1)" "0.1 - 72.2 (1.4)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  2(1P31.1) MUTATED"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK  2(1P31.1) MUTATED"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  2(1P31.1) MUTATED"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  2(1P31.1) MUTATED"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK  2(1P31.1) MUTATED"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  2(1P31.1) MUTATED"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  2(1P31.1) MUTATED"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK  2(1P31.1) MUTATED"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  2(1P31.1) MUTATED"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  2(1P31.1) MUTATED" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  2(1P31.1) WILD-TYPE"   "DEL PEAK  2(1P31.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  2(1P31.1) WILD-TYPE" "DEL PEAK  2(1P31.1) WILD-TYPE" 
[1] "hr=" "1.4"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P31.1) MUTATED      9   17
  DEL PEAK  2(1P31.1) WILD-TYPE   56   79
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  FEMALE                           9                            56
  MALE                            17                            79
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  2(1P31.1) MUTATED                                       2
  DEL PEAK  2(1P31.1) WILD-TYPE                                    17
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  2(1P31.1) MUTATED                                                       10
  DEL PEAK  2(1P31.1) WILD-TYPE                                                     69
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK  2(1P31.1) MUTATED                                           0
  DEL PEAK  2(1P31.1) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  2(1P31.1) MUTATED                                                   2
  DEL PEAK  2(1P31.1) WILD-TYPE                                                 7
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  2(1P31.1) MUTATED                                                    2
  DEL PEAK  2(1P31.1) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  2(1P31.1) MUTATED                                                  4
  DEL PEAK  2(1P31.1) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  2(1P31.1) MUTATED                                                                        6
  DEL PEAK  2(1P31.1) WILD-TYPE                                                                     29
D28V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  2(1P31.1) MUTATED    1  9 10  4
  DEL PEAK  2(1P31.1) WILD-TYPE  5 44 49 29
D28V5, multiclass
    clus
vv   DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  T1                           1                             5
  T2                           9                            44
  T3                          10                            49
  T4                           4                            29
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK  2(1P31.1) MUTATED    8  9  4  2
  DEL PEAK  2(1P31.1) WILD-TYPE 42 48 20 17
D28V6, multiclass
    clus
vv   DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  N0                           8                            42
  N1                           9                            48
  N2                           4                            20
  N3                           2                            17
                               vv
clus                             M0  M1  MX
  DEL PEAK  2(1P31.1) MUTATED    20   5   1
  DEL PEAK  2(1P31.1) WILD-TYPE 112  13  10
D28V7, multiclass
    clus
vv   DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  M0                          20                           112
  M1                           5                            13
  MX                           1                            10
                               vv
clus                             I II III IV
  DEL PEAK  2(1P31.1) MUTATED    4  8   5  6
  DEL PEAK  2(1P31.1) WILD-TYPE 21 35  43 23
D28V8, multiclass
     clus
vv    DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  I                             4                            21
  II                            8                            35
  III                           5                            43
  IV                            6                            23
D28V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P31.1) MUTATED      1   25
  DEL PEAK  2(1P31.1) WILD-TYPE    4  131
     clus
vv    DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  NO                            1                             4
  YES                          25                           131

Clustering(29) Variable = Del Peak  3(1q44) mutation analysis
D29V1, survival
                             sevent
clus2                           0   1
  DEL PEAK  3(1Q44) MUTATED     5   4
  DEL PEAK  3(1Q44) WILD-TYPE 103  12
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                          9                         115 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                          4                          12 
$`DEL PEAK  3(1Q44) MUTATED`
TCGA-CD-5801 TCGA-CG-4306 TCGA-CG-4441 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 
        0.49         1.02        14.01        18.94         7.07         1.02 
TCGA-CG-5724 TCGA-D7-6519 TCGA-IP-7968 
       12.03        15.65         2.53 

$`DEL PEAK  3(1Q44) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.85         0.82         0.62         0.62         1.71         2.17 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 
        0.99         1.22         0.66         1.12         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 
        0.26         1.22         1.48         0.46         1.25         0.13 
TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        1.05         0.82         0.69         0.16         4.54         0.99 
TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.95         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 
        0.82         0.69         0.36         0.30         0.07        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
        3.02        27.02        15.95        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
        4.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 
        1.02         8.98        12.00         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 
       15.02        28.96        31.04        65.10         4.01        55.04 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       21.07         7.99         8.65         3.58         4.54         9.80 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        4.27         0.62         7.79         6.54         2.01        72.23 
TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7806 
        0.39         0.20         3.02         3.58        26.43         6.87 
TCGA-IN-7808 
        3.55 

  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                       0.49                        0.07 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                      18.94                       72.23 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                       7.07                        1.48 
[1] "0.5 - 18.9 (7.1)" "0.1 - 72.2 (1.5)"
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-4443                  TCGA-CG-4444 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-4443                  TCGA-CG-4444 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7723                  TCGA-BR-7851 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-4443                  TCGA-CG-4444 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK  3(1Q44) MUTATED" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"DEL PEAK  3(1Q44) WILD-TYPE" "DEL PEAK  3(1Q44) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK  3(1Q44) WILD-TYPE"   "DEL PEAK  3(1Q44) MUTATED" 
[1] "hr=" "4.1"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(1Q44) MUTATED      4    8
  DEL PEAK  3(1Q44) WILD-TYPE   61   88
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  FEMALE                         4                          61
  MALE                           8                          88
                             vv
clus                          STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  3(1Q44) MUTATED                                       2
  DEL PEAK  3(1Q44) WILD-TYPE                                    17
                             vv
clus                          STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  3(1Q44) MUTATED                                                        5
  DEL PEAK  3(1Q44) WILD-TYPE                                                     74
                             vv
clus                          STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK  3(1Q44) MUTATED                                           0
  DEL PEAK  3(1Q44) WILD-TYPE                                         1
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  3(1Q44) MUTATED                                                   0
  DEL PEAK  3(1Q44) WILD-TYPE                                                 9
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  3(1Q44) MUTATED                                                    0
  DEL PEAK  3(1Q44) WILD-TYPE                                                  3
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  3(1Q44) MUTATED                                                  0
  DEL PEAK  3(1Q44) WILD-TYPE                                               10
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  3(1Q44) MUTATED                                                                        4
  DEL PEAK  3(1Q44) WILD-TYPE                                                                     31
D29V4, multiclass
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK  3(1Q44) MUTATED    0  4  7  0
  DEL PEAK  3(1Q44) WILD-TYPE  6 49 52 33
D29V5, multiclass
    clus
vv   DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  T1                         0                           6
  T2                         4                          49
  T3                         7                          52
  T4                         0                          33
                             vv
clus                          N0 N1 N2 N3
  DEL PEAK  3(1Q44) MUTATED    2  4  3  2
  DEL PEAK  3(1Q44) WILD-TYPE 48 53 21 17
D29V6, multiclass
    clus
vv   DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  N0                         2                          48
  N1                         4                          53
  N2                         3                          21
  N3                         2                          17
                             vv
clus                           M0  M1  MX
  DEL PEAK  3(1Q44) MUTATED     9   2   1
  DEL PEAK  3(1Q44) WILD-TYPE 123  16  10
D29V7, multiclass
    clus
vv   DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  M0                         9                         123
  M1                         2                          16
  MX                         1                          10
                             vv
clus                           I II III IV
  DEL PEAK  3(1Q44) MUTATED    2  2   4  3
  DEL PEAK  3(1Q44) WILD-TYPE 23 41  44 26
D29V8, multiclass
     clus
vv    DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  I                           2                          23
  II                          2                          41
  III                         4                          44
  IV                          3                          26
D29V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(1Q44) MUTATED      0   12
  DEL PEAK  3(1Q44) WILD-TYPE    5  144
     clus
vv    DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  NO                          0                           5
  YES                        12                         144

Clustering(30) Variable = Del Peak  4(2q32.1) mutation analysis
D30V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  4(2Q32.1) MUTATED    9  4
  DEL PEAK  4(2Q32.1) WILD-TYPE 99 12
  DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE 
                           13                           111 
  DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE 
                            4                            12 
$`DEL PEAK  4(2Q32.1) MUTATED`
TCGA-BR-6458 TCGA-BR-6565 TCGA-CG-4300 TCGA-CG-4444 TCGA-CG-4462 TCGA-CG-4472 
        1.35         0.62        20.02        47.05         1.02        12.00 
TCGA-CG-5720 TCGA-CG-5724 TCGA-CG-5725 TCGA-D7-5578 TCGA-D7-5579 TCGA-EQ-8122 
        0.99        12.03        15.02         3.58         4.54         7.79 
TCGA-HJ-7597 
       26.43 

$`DEL PEAK  4(2Q32.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.48         0.46         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
        0.69         0.16         4.54         0.99         0.95         0.69 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.16         1.08         0.82         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.49         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 
        1.18         1.55         1.48         0.76         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 
        0.36         0.49         0.30         0.07         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
       15.95         1.02        52.96         8.05        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4465 
       14.01        29.98        19.07        12.03        21.99         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
       18.94         7.07         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 
        1.02         1.02         5.98         0.95        70.06        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       31.04        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        8.65         9.80        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        0.69         5.95         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         0.62         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        2.01        72.23         0.39         0.20         3.02         3.58 
TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        6.87         3.55         2.53 

  DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE 
                         0.62                          0.07 
  DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE 
                        47.05                         72.23 
  DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE 
                         7.79                          1.41 
[1] "0.6 - 47.0 (7.8)" "0.1 - 72.2 (1.4)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  4(2Q32.1) MUTATED"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  4(2Q32.1) MUTATED"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  4(2Q32.1) MUTATED"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  4(2Q32.1) MUTATED"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  4(2Q32.1) WILD-TYPE"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  4(2Q32.1) MUTATED"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  4(2Q32.1) MUTATED"   "DEL PEAK  4(2Q32.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  4(2Q32.1) MUTATED" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  4(2Q32.1) WILD-TYPE" "DEL PEAK  4(2Q32.1) WILD-TYPE" 
[1] "hr=" "1.8"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q32.1) MUTATED      7   12
  DEL PEAK  4(2Q32.1) WILD-TYPE   58   84
        clus
vv       DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  FEMALE                           7                            58
  MALE                            12                            84
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  4(2Q32.1) MUTATED                                       2
  DEL PEAK  4(2Q32.1) WILD-TYPE                                    17
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  4(2Q32.1) MUTATED                                                        9
  DEL PEAK  4(2Q32.1) WILD-TYPE                                                     70
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK  4(2Q32.1) MUTATED                                           1
  DEL PEAK  4(2Q32.1) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  4(2Q32.1) MUTATED                                                   2
  DEL PEAK  4(2Q32.1) WILD-TYPE                                                 7
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  4(2Q32.1) MUTATED                                                    0
  DEL PEAK  4(2Q32.1) WILD-TYPE                                                  3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  4(2Q32.1) MUTATED                                                  1
  DEL PEAK  4(2Q32.1) WILD-TYPE                                                9
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  4(2Q32.1) MUTATED                                                                        1
  DEL PEAK  4(2Q32.1) WILD-TYPE                                                                     34
D30V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  4(2Q32.1) MUTATED    0  5 10  2
  DEL PEAK  4(2Q32.1) WILD-TYPE  6 48 49 31
D30V5, multiclass
    clus
vv   DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  T1                           0                             6
  T2                           5                            48
  T3                          10                            49
  T4                           2                            31
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK  4(2Q32.1) MUTATED    4  5  4  4
  DEL PEAK  4(2Q32.1) WILD-TYPE 46 52 20 15
D30V6, multiclass
    clus
vv   DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  N0                           4                            46
  N1                           5                            52
  N2                           4                            20
  N3                           4                            15
                               vv
clus                             M0  M1  MX
  DEL PEAK  4(2Q32.1) MUTATED    14   2   3
  DEL PEAK  4(2Q32.1) WILD-TYPE 118  16   8
D30V7, multiclass
    clus
vv   DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  M0                          14                           118
  M1                           2                            16
  MX                           3                             8
                               vv
clus                             I II III IV
  DEL PEAK  4(2Q32.1) MUTATED    3  6   3  4
  DEL PEAK  4(2Q32.1) WILD-TYPE 22 37  45 25
D30V8, multiclass
     clus
vv    DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  I                             3                            22
  II                            6                            37
  III                           3                            45
  IV                            4                            25
D30V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q32.1) MUTATED      1   18
  DEL PEAK  4(2Q32.1) WILD-TYPE    4  138
     clus
vv    DEL PEAK  4(2Q32.1) MUTATED DEL PEAK  4(2Q32.1) WILD-TYPE
  NO                            1                             4
  YES                          18                           138

Clustering(31) Variable = Del Peak  5(2q33.3) mutation analysis
D31V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  5(2Q33.3) MUTATED   10  3
  DEL PEAK  5(2Q33.3) WILD-TYPE 98 13
  DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE 
                           13                           111 
  DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE 
                            3                            13 
$`DEL PEAK  5(2Q33.3) MUTATED`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-7901 TCGA-CG-4300 TCGA-CG-4462 
        1.35         0.62         1.22         0.95        20.02         1.02 
TCGA-CG-5720 TCGA-CG-5724 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6528 TCGA-EQ-8122 
        0.99        12.03         3.58         4.54         1.68         7.79 
TCGA-HJ-7597 
       26.43 

$`DEL PEAK  5(2Q33.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 
        0.82         0.62         1.71         2.17         0.99         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        0.46         1.25         0.13         1.05         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         4.54         0.99         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 
        1.48         0.76         0.82         0.69         0.36         0.49 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.30         0.07         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4465 TCGA-CG-4466 
       47.05        19.07        12.03        21.99         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 
        1.02         1.02         5.98         0.95        70.06        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        7.99         8.65         9.80        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 
        6.90         0.69         5.95         6.61         4.14         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        4.70         4.04         2.93         4.27         0.62         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        2.01        72.23         0.39         0.20         3.02         3.58 
TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        6.87         3.55         2.53 

  DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE 
                         0.62                          0.07 
  DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE 
                        26.43                         72.23 
  DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE 
                         1.68                          1.48 
[1] "0.6 - 26.4 (1.7)" "0.1 - 72.2 (1.5)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  5(2Q33.3) MUTATED"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  5(2Q33.3) MUTATED"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  5(2Q33.3) MUTATED"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  5(2Q33.3) WILD-TYPE"   "DEL PEAK  5(2Q33.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  5(2Q33.3) MUTATED" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  5(2Q33.3) WILD-TYPE" "DEL PEAK  5(2Q33.3) WILD-TYPE" 
[1] "hr=" "2.3"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(2Q33.3) MUTATED      8    8
  DEL PEAK  5(2Q33.3) WILD-TYPE   57   88
        clus
vv       DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  FEMALE                           8                            57
  MALE                             8                            88
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  5(2Q33.3) MUTATED                                       2
  DEL PEAK  5(2Q33.3) WILD-TYPE                                    17
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  5(2Q33.3) MUTATED                                                        7
  DEL PEAK  5(2Q33.3) WILD-TYPE                                                     72
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK  5(2Q33.3) MUTATED                                           1
  DEL PEAK  5(2Q33.3) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  5(2Q33.3) MUTATED                                                   2
  DEL PEAK  5(2Q33.3) WILD-TYPE                                                 7
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  5(2Q33.3) MUTATED                                                    0
  DEL PEAK  5(2Q33.3) WILD-TYPE                                                  3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  5(2Q33.3) MUTATED                                                  2
  DEL PEAK  5(2Q33.3) WILD-TYPE                                                8
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  5(2Q33.3) MUTATED                                                                        1
  DEL PEAK  5(2Q33.3) WILD-TYPE                                                                     34
D31V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  5(2Q33.3) MUTATED    0  5 10  1
  DEL PEAK  5(2Q33.3) WILD-TYPE  6 48 49 32
D31V5, multiclass
    clus
vv   DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  T1                           0                             6
  T2                           5                            48
  T3                          10                            49
  T4                           1                            32
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK  5(2Q33.3) MUTATED    5  3  4  4
  DEL PEAK  5(2Q33.3) WILD-TYPE 45 54 20 15
D31V6, multiclass
    clus
vv   DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  N0                           5                            45
  N1                           3                            54
  N2                           4                            20
  N3                           4                            15
                               vv
clus                             M0  M1  MX
  DEL PEAK  5(2Q33.3) MUTATED    11   2   3
  DEL PEAK  5(2Q33.3) WILD-TYPE 121  16   8
D31V7, multiclass
    clus
vv   DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  M0                          11                           121
  M1                           2                            16
  MX                           3                             8
                               vv
clus                             I II III IV
  DEL PEAK  5(2Q33.3) MUTATED    4  5   4  3
  DEL PEAK  5(2Q33.3) WILD-TYPE 21 38  44 26
D31V8, multiclass
     clus
vv    DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  I                             4                            21
  II                            5                            38
  III                           4                            44
  IV                            3                            26
D31V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(2Q33.3) MUTATED      2   14
  DEL PEAK  5(2Q33.3) WILD-TYPE    3  142
     clus
vv    DEL PEAK  5(2Q33.3) MUTATED DEL PEAK  5(2Q33.3) WILD-TYPE
  NO                            2                             3
  YES                          14                           142

Clustering(32) Variable = Del Peak  6(2q37.2) mutation analysis
D32V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  6(2Q37.2) MUTATED   17  2
  DEL PEAK  6(2Q37.2) WILD-TYPE 91 14
  DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE 
                           19                           105 
  DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE 
                            2                            14 
$`DEL PEAK  6(2Q37.2) MUTATED`
TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-7704 TCGA-BR-7901 TCGA-CD-5800 TCGA-CG-4300 
        0.62         1.22         1.25         0.95         0.36        20.02 
TCGA-CG-4437 TCGA-CG-4441 TCGA-CG-4449 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-5719 
        8.05        14.01        19.07        18.94        12.00         1.02 
TCGA-D7-5578 TCGA-D7-6519 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6822 TCGA-EQ-8122 
        3.58        15.65         1.68         3.65         4.27         7.79 
TCGA-HJ-7597 
       26.43 

$`DEL PEAK  6(2Q37.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.85         0.82         0.62         1.71         2.17         0.99 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        1.48         0.46         0.13         1.05         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         4.54         0.99         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5802 
        1.48         0.76         0.82         0.69         0.49         0.30 
TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
        0.07         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4460 
       54.05         4.01        29.98        47.05        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
        1.02         8.98         7.07         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        6.94         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6518 
       55.04        21.07         7.99         8.65         4.54         9.80 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
        9.63         8.19         6.90         0.69         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6177 
        4.14         4.70         4.04         2.93         0.62         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        2.01        72.23         0.39         0.20         3.02         3.58 
TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        6.87         3.55         2.53 

  DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE 
                         0.36                          0.07 
  DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE 
                        26.43                         72.23 
  DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE 
                         4.27                          1.35 
[1] "0.4 - 26.4 (4.3)" "0.1 - 72.2 (1.4)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  6(2Q37.2) WILD-TYPE"   "DEL PEAK  6(2Q37.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  6(2Q37.2) MUTATED" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  6(2Q37.2) WILD-TYPE" "DEL PEAK  6(2Q37.2) WILD-TYPE" 
[1] "hr=" "1.5"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(2Q37.2) MUTATED     11   11
  DEL PEAK  6(2Q37.2) WILD-TYPE   54   85
        clus
vv       DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  FEMALE                          11                            54
  MALE                            11                            85
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  6(2Q37.2) MUTATED                                       2
  DEL PEAK  6(2Q37.2) WILD-TYPE                                    17
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  6(2Q37.2) MUTATED                                                        5
  DEL PEAK  6(2Q37.2) WILD-TYPE                                                     74
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK  6(2Q37.2) MUTATED                                           1
  DEL PEAK  6(2Q37.2) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  6(2Q37.2) MUTATED                                                   1
  DEL PEAK  6(2Q37.2) WILD-TYPE                                                 8
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  6(2Q37.2) MUTATED                                                    1
  DEL PEAK  6(2Q37.2) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  6(2Q37.2) MUTATED                                                  4
  DEL PEAK  6(2Q37.2) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  6(2Q37.2) MUTATED                                                                        7
  DEL PEAK  6(2Q37.2) WILD-TYPE                                                                     28
D32V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  6(2Q37.2) MUTATED    1 10  8  3
  DEL PEAK  6(2Q37.2) WILD-TYPE  5 43 51 30
D32V5, multiclass
    clus
vv   DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  T1                           1                             5
  T2                          10                            43
  T3                           8                            51
  T4                           3                            30
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK  6(2Q37.2) MUTATED   10  6  5  1
  DEL PEAK  6(2Q37.2) WILD-TYPE 40 51 19 18
D32V6, multiclass
    clus
vv   DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  N0                          10                            40
  N1                           6                            51
  N2                           5                            19
  N3                           1                            18
                               vv
clus                             M0  M1  MX
  DEL PEAK  6(2Q37.2) MUTATED    18   1   3
  DEL PEAK  6(2Q37.2) WILD-TYPE 114  17   8
D32V7, multiclass
    clus
vv   DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  M0                          18                           114
  M1                           1                            17
  MX                           3                             8
                               vv
clus                             I II III IV
  DEL PEAK  6(2Q37.2) MUTATED    6  7   7  2
  DEL PEAK  6(2Q37.2) WILD-TYPE 19 36  41 27
D32V8, multiclass
     clus
vv    DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  I                             6                            19
  II                            7                            36
  III                           7                            41
  IV                            2                            27
D32V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(2Q37.2) MUTATED      1   21
  DEL PEAK  6(2Q37.2) WILD-TYPE    4  135
     clus
vv    DEL PEAK  6(2Q37.2) MUTATED DEL PEAK  6(2Q37.2) WILD-TYPE
  NO                            1                             4
  YES                          21                           135

Clustering(33) Variable = Del Peak  7(3p26.1) mutation analysis
D33V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  7(3P26.1) MUTATED   28  3
  DEL PEAK  7(3P26.1) WILD-TYPE 80 13
  DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE 
                           31                            93 
  DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE 
                            3                            13 
$`DEL PEAK  7(3P26.1) MUTATED`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-6803 TCGA-BR-7715 TCGA-BR-7716 
        1.35         0.62         1.71         0.66         1.05         0.82 
TCGA-BR-7957 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4301 
        0.69         0.69         0.36         0.49        20.02         3.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4444 TCGA-CG-4455 
       52.96         8.05        54.05         4.01        47.05        12.03 
TCGA-CG-4466 TCGA-CG-5718 TCGA-CG-5725 TCGA-CG-5730 TCGA-D7-5578 TCGA-D7-6525 
       18.94         1.02        15.02         4.01         3.58         5.95 
TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6817 TCGA-EQ-5647 TCGA-FP-7829 TCGA-FP-7916 
        6.61         1.68         4.70         0.62         0.20         3.02 
TCGA-IN-7806 
        6.87 

$`DEL PEAK  7(3P26.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.82         0.62         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        1.12         0.76         0.26         1.22         1.48         0.46 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        1.25         0.13         0.69         0.16         4.54         0.99 
TCGA-BR-7901 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.95         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 
        0.26         1.18         1.55         1.48         0.76         0.82 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4441 
        0.30         0.07        27.02        15.95         1.02        14.01 
TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 
       29.98        19.07        21.99         1.02         8.98         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 
        0.99         5.98         0.95        70.06        12.03        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       31.04        65.10        55.04        21.07         7.99         8.65 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        4.54         9.80        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        0.69         4.14         3.65         4.04         2.93         4.27 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7998 
        7.79         6.54         2.01        72.23         0.39         3.58 
TCGA-HJ-7597 TCGA-IN-7808 TCGA-IP-7968 
       26.43         3.55         2.53 

  DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE 
                         0.20                          0.07 
  DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE 
                        54.05                         72.23 
  DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE 
                         3.02                          1.35 
[1] "0.2 - 54.0 (3.0)" "0.1 - 72.2 (1.4)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK  7(3P26.1) MUTATED"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK  7(3P26.1) MUTATED" "DEL PEAK  7(3P26.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK  7(3P26.1) WILD-TYPE"   "DEL PEAK  7(3P26.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  7(3P26.1) WILD-TYPE" "DEL PEAK  7(3P26.1) WILD-TYPE" 
[1] "hr=" "1.4"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(3P26.1) MUTATED     17   21
  DEL PEAK  7(3P26.1) WILD-TYPE   48   75
        clus
vv       DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  FEMALE                          17                            48
  MALE                            21                            75
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  7(3P26.1) MUTATED                                       5
  DEL PEAK  7(3P26.1) WILD-TYPE                                    14
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  7(3P26.1) MUTATED                                                       16
  DEL PEAK  7(3P26.1) WILD-TYPE                                                     63
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK  7(3P26.1) MUTATED                                           0
  DEL PEAK  7(3P26.1) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  7(3P26.1) MUTATED                                                   2
  DEL PEAK  7(3P26.1) WILD-TYPE                                                 7
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  7(3P26.1) MUTATED                                                    1
  DEL PEAK  7(3P26.1) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  7(3P26.1) MUTATED                                                  4
  DEL PEAK  7(3P26.1) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  7(3P26.1) MUTATED                                                                        9
  DEL PEAK  7(3P26.1) WILD-TYPE                                                                     26
D33V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  7(3P26.1) MUTATED    0 13 17  6
  DEL PEAK  7(3P26.1) WILD-TYPE  6 40 42 27
D33V5, multiclass
    clus
vv   DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  T1                           0                             6
  T2                          13                            40
  T3                          17                            42
  T4                           6                            27
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK  7(3P26.1) MUTATED    9 14  8  5
  DEL PEAK  7(3P26.1) WILD-TYPE 41 43 16 14
D33V6, multiclass
    clus
vv   DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  N0                           9                            41
  N1                          14                            43
  N2                           8                            16
  N3                           5                            14
                               vv
clus                             M0  M1  MX
  DEL PEAK  7(3P26.1) MUTATED    30   5   3
  DEL PEAK  7(3P26.1) WILD-TYPE 102  13   8
D33V7, multiclass
    clus
vv   DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  M0                          30                           102
  M1                           5                            13
  MX                           3                             8
                               vv
clus                             I II III IV
  DEL PEAK  7(3P26.1) MUTATED    5 10  13  7
  DEL PEAK  7(3P26.1) WILD-TYPE 20 33  35 22
D33V8, multiclass
     clus
vv    DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  I                             5                            20
  II                           10                            33
  III                          13                            35
  IV                            7                            22
D33V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(3P26.1) MUTATED      1   37
  DEL PEAK  7(3P26.1) WILD-TYPE    4  119
     clus
vv    DEL PEAK  7(3P26.1) MUTATED DEL PEAK  7(3P26.1) WILD-TYPE
  NO                            1                             4
  YES                          37                           119

Clustering(34) Variable = Del Peak  8(3p14.2) mutation analysis
D34V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  8(3P14.2) MUTATED   38  6
  DEL PEAK  8(3P14.2) WILD-TYPE 70 10
  DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE 
                           44                            80 
  DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE 
                            6                            10 
$`DEL PEAK  8(3P14.2) MUTATED`
TCGA-B7-5816 TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-6803 TCGA-BR-6852 
        5.62         1.35         0.62         1.71         0.66         0.26 
TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7901 TCGA-BR-7957 TCGA-CD-5799 
        1.05         0.82         0.16         0.95         0.69         0.69 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4436 
        0.36         0.49        20.02         3.02        15.95        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4444 TCGA-CG-4455 
        8.05        54.05         4.01        14.01        47.05        12.03 
TCGA-CG-4466 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5730 
       18.94         1.02         1.02        12.03        15.02         4.01 
TCGA-D7-5577 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.65        15.65         9.63         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6822 TCGA-EQ-5647 TCGA-FP-7829 TCGA-FP-7916 
        1.68         4.70         4.27         0.62         0.20         3.02 
TCGA-HJ-7597 TCGA-IN-7806 
       26.43         6.87 

$`DEL PEAK  8(3P14.2) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 
        0.10         0.95         1.41         1.35         0.85         0.82 
TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 
        0.62         2.17         0.99         1.22         0.66         1.12 
TCGA-BR-6802 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 
        0.76         1.22         1.48         0.46         1.25         0.13 
TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        0.69         4.54         0.99         0.16         1.08         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        1.32         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.26         0.43         0.26         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4304 TCGA-CG-4306 
        0.76         0.82         0.30         0.07        27.02         1.02 
TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 
       29.98        19.07        21.99         1.02         8.98         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5720 
       12.00         1.02         1.02         1.02         6.94         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
        5.98         0.95        70.06        28.96        31.04        65.10 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
       55.04        21.07         7.99         3.58         4.54         9.80 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 
        8.19         6.90         0.69         3.65         4.04         2.93 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7998 
        7.79         6.54         2.01        72.23         0.39         3.58 
TCGA-IN-7808 TCGA-IP-7968 
        3.55         2.53 

  DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE 
                         0.16                          0.07 
  DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE 
                        54.05                         72.23 
  DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE 
                        4.075                         1.235 
[1] "0.2 - 54.0 (4.1)" "0.1 - 72.2 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK  8(3P14.2) WILD-TYPE"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK  8(3P14.2) MUTATED" "DEL PEAK  8(3P14.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK  8(3P14.2) MUTATED"   "DEL PEAK  8(3P14.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK  8(3P14.2) WILD-TYPE" "DEL PEAK  8(3P14.2) WILD-TYPE" 
[1] "hr=" "1"  
D34V2, continuous
D34V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(3P14.2) MUTATED     24   27
  DEL PEAK  8(3P14.2) WILD-TYPE   41   69
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  FEMALE                          24                            41
  MALE                            27                            69
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  8(3P14.2) MUTATED                                       8
  DEL PEAK  8(3P14.2) WILD-TYPE                                    11
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  8(3P14.2) MUTATED                                                       20
  DEL PEAK  8(3P14.2) WILD-TYPE                                                     59
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK  8(3P14.2) MUTATED                                           1
  DEL PEAK  8(3P14.2) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  8(3P14.2) MUTATED                                                   2
  DEL PEAK  8(3P14.2) WILD-TYPE                                                 7
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  8(3P14.2) MUTATED                                                    2
  DEL PEAK  8(3P14.2) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  8(3P14.2) MUTATED                                                  6
  DEL PEAK  8(3P14.2) WILD-TYPE                                                4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  8(3P14.2) MUTATED                                                                       11
  DEL PEAK  8(3P14.2) WILD-TYPE                                                                     24
D34V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK  8(3P14.2) MUTATED    0 21 21  8
  DEL PEAK  8(3P14.2) WILD-TYPE  6 32 38 25
D34V5, multiclass
    clus
vv   DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  T1                           0                             6
  T2                          21                            32
  T3                          21                            38
  T4                           8                            25
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK  8(3P14.2) MUTATED   14 20  9  7
  DEL PEAK  8(3P14.2) WILD-TYPE 36 37 15 12
D34V6, multiclass
    clus
vv   DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  N0                          14                            36
  N1                          20                            37
  N2                           9                            15
  N3                           7                            12
                               vv
clus                            M0 M1 MX
  DEL PEAK  8(3P14.2) MUTATED   41  7  3
  DEL PEAK  8(3P14.2) WILD-TYPE 91 11  8
D34V7, multiclass
    clus
vv   DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  M0                          41                            91
  M1                           7                            11
  MX                           3                             8
                               vv
clus                             I II III IV
  DEL PEAK  8(3P14.2) MUTATED    7 13  21  9
  DEL PEAK  8(3P14.2) WILD-TYPE 18 30  27 20
D34V8, multiclass
     clus
vv    DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  I                             7                            18
  II                           13                            30
  III                          21                            27
  IV                            9                            20
D34V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(3P14.2) MUTATED      2   49
  DEL PEAK  8(3P14.2) WILD-TYPE    3  107
     clus
vv    DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  NO                            2                             3
  YES                          49                           107

Clustering(35) Variable = Del Peak  9(3q26.31) mutation analysis
D35V1, survival
                                sevent
clus2                              0   1
  DEL PEAK  9(3Q26.31) MUTATED     8   1
  DEL PEAK  9(3Q26.31) WILD-TYPE 100  15
  DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE 
                             9                            115 
  DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE 
                             1                             15 
$`DEL PEAK  9(3Q26.31) MUTATED`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-7715 TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4466 
        1.35         0.62         1.05        54.05        14.01        18.94 
TCGA-D7-5578 TCGA-D7-6526 TCGA-IN-7806 
        3.58         6.61         6.87 

$`DEL PEAK  9(3Q26.31) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7717 
        1.48         0.46         1.25         0.13         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 
        0.16         4.54         0.99         0.95         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        1.55         1.48         0.76         0.82         0.69         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
        0.49         0.30         0.07        20.02         3.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4443 
       15.95         1.02        52.96         8.05         4.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       47.05        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       12.03        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6518 
       55.04        21.07         7.99         8.65         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        4.27         0.62         7.79         6.54         2.01        72.23 
TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7808 
        0.39         0.20         3.02         3.58        26.43         3.55 
TCGA-IP-7968 
        2.53 

  DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE 
                          0.62                           0.07 
  DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE 
                         54.05                          72.23 
  DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE 
                          6.61                           1.48 
[1] "0.6 - 54.0 (6.6)" "0.1 - 72.2 (1.5)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  9(3Q26.31) MUTATED" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK  9(3Q26.31) MUTATED" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK  9(3Q26.31) MUTATED" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  9(3Q26.31) MUTATED" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK  9(3Q26.31) MUTATED" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK  9(3Q26.31) MUTATED" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK  9(3Q26.31) MUTATED" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK  9(3Q26.31) MUTATED" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK  9(3Q26.31) MUTATED" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK  9(3Q26.31) WILD-TYPE"   "DEL PEAK  9(3Q26.31) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK  9(3Q26.31) WILD-TYPE" "DEL PEAK  9(3Q26.31) WILD-TYPE" 
[1] "hr=" "1.5"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(3Q26.31) MUTATED      5    8
  DEL PEAK  9(3Q26.31) WILD-TYPE   60   88
        clus
vv       DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  FEMALE                            5                             60
  MALE                              8                             88
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK  9(3Q26.31) MUTATED                                       1
  DEL PEAK  9(3Q26.31) WILD-TYPE                                    18
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  9(3Q26.31) MUTATED                                                        7
  DEL PEAK  9(3Q26.31) WILD-TYPE                                                     72
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK  9(3Q26.31) MUTATED                                           0
  DEL PEAK  9(3Q26.31) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK  9(3Q26.31) MUTATED                                                   0
  DEL PEAK  9(3Q26.31) WILD-TYPE                                                 9
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK  9(3Q26.31) MUTATED                                                    0
  DEL PEAK  9(3Q26.31) WILD-TYPE                                                  3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK  9(3Q26.31) MUTATED                                                  2
  DEL PEAK  9(3Q26.31) WILD-TYPE                                                8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK  9(3Q26.31) MUTATED                                                                        3
  DEL PEAK  9(3Q26.31) WILD-TYPE                                                                     32
D35V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK  9(3Q26.31) MUTATED    0  3  7  1
  DEL PEAK  9(3Q26.31) WILD-TYPE  6 50 52 32
D35V5, multiclass
    clus
vv   DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  T1                            0                              6
  T2                            3                             50
  T3                            7                             52
  T4                            1                             32
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK  9(3Q26.31) MUTATED    4  3  4  0
  DEL PEAK  9(3Q26.31) WILD-TYPE 46 54 20 19
D35V6, multiclass
    clus
vv   DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  N0                            4                             46
  N1                            3                             54
  N2                            4                             20
  N3                            0                             19
                                vv
clus                              M0  M1  MX
  DEL PEAK  9(3Q26.31) MUTATED    11   0   2
  DEL PEAK  9(3Q26.31) WILD-TYPE 121  18   9
D35V7, multiclass
    clus
vv   DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  M0                           11                            121
  M1                            0                             18
  MX                            2                              9
                                vv
clus                              I II III IV
  DEL PEAK  9(3Q26.31) MUTATED    2  4   3  1
  DEL PEAK  9(3Q26.31) WILD-TYPE 23 39  45 28
D35V8, multiclass
     clus
vv    DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  I                              2                             23
  II                             4                             39
  III                            3                             45
  IV                             1                             28
D35V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  9(3Q26.31) MUTATED      1   12
  DEL PEAK  9(3Q26.31) WILD-TYPE    4  144
     clus
vv    DEL PEAK  9(3Q26.31) MUTATED DEL PEAK  9(3Q26.31) WILD-TYPE
  NO                             1                              4
  YES                           12                            144

Clustering(36) Variable = Del Peak 10(4p16.3) mutation analysis
D36V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 10(4P16.3) MUTATED   31  5
  DEL PEAK 10(4P16.3) WILD-TYPE 77 11
  DEL PEAK 10(4P16.3) MUTATED DEL PEAK 10(4P16.3) WILD-TYPE 
                           36                            88 
  DEL PEAK 10(4P16.3) MUTATED DEL PEAK 10(4P16.3) WILD-TYPE 
                            5                            11 
$`DEL PEAK 10(4P16.3) MUTATED`
TCGA-BR-6565 TCGA-BR-6803 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7715 TCGA-BR-7716 
        0.62         0.66         1.48         0.46         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-7957 TCGA-CD-5802 TCGA-CD-5803 
        0.69         4.54         0.95         0.69         0.30         0.07 
TCGA-CG-4300 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4444 
       20.02        52.96         8.05        54.05         4.01        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-5725 TCGA-D7-6518 
       19.07        12.03        18.94         7.07        15.02         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6820 
       15.65         9.63         6.61         4.14         1.68         2.93 
TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-7916 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
        7.79        72.23         3.02        26.43         6.87         2.53 

$`DEL PEAK 10(4P16.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.85         0.82         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 
        1.22         0.66         1.12         0.76         0.26         1.22 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7958 TCGA-BR-7959 
        1.25         0.13         0.16         0.99         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 
        1.48         0.76         0.82         0.69         0.36         0.49 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4441 TCGA-CG-4443 
        3.02        27.02        15.95         1.02        14.01        29.98 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 
       21.99         1.02         8.98        12.00         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         6.94         1.02         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
        0.95        70.06        12.03        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
        4.01        55.04        21.07         7.99         8.65         3.58 
TCGA-D7-5579 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6815 
        4.54         8.19         6.90         0.69         5.95         3.65 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.70         4.04         4.27         0.62         6.54         2.01 
TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7998 TCGA-IN-7808 
        0.39         0.20         3.58         3.55 

  DEL PEAK 10(4P16.3) MUTATED DEL PEAK 10(4P16.3) WILD-TYPE 
                         0.07                          0.10 
  DEL PEAK 10(4P16.3) MUTATED DEL PEAK 10(4P16.3) WILD-TYPE 
                        72.23                         70.06 
  DEL PEAK 10(4P16.3) MUTATED DEL PEAK 10(4P16.3) WILD-TYPE 
                        5.575                         1.220 
[1] "0.1 - 72.2 (5.6)" "0.1 - 70.1 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 10(4P16.3) WILD-TYPE" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK 10(4P16.3) MUTATED" "DEL PEAK 10(4P16.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK 10(4P16.3) MUTATED"   "DEL PEAK 10(4P16.3) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 10(4P16.3) WILD-TYPE"   "DEL PEAK 10(4P16.3) MUTATED" 
[1] "hr=" "2"  
D36V2, continuous
D36V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(4P16.3) MUTATED     17   32
  DEL PEAK 10(4P16.3) WILD-TYPE   48   64
        clus
vv       DEL PEAK 10(4P16.3) MUTATED DEL PEAK 10(4P16.3) WILD-TYPE
  FEMALE                          17                            48
  MALE                            32                            64
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 10(4P16.3) MUTATED                                       6
  DEL PEAK 10(4P16.3) WILD-TYPE                                    13
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 10(4P16.3) MUTATED                                                       23
  DEL PEAK 10(4P16.3) WILD-TYPE                                                     56
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 10(4P16.3) MUTATED                                           1
  DEL PEAK 10(4P16.3) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 10(4P16.3) MUTATED                                                   3
  DEL PEAK 10(4P16.3) WILD-TYPE                                                 6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 10(4P16.3) MUTATED                                                    2
  DEL PEAK 10(4P16.3) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 10(4P16.3) MUTATED                                                  5
  DEL PEAK 10(4P16.3) WILD-TYPE                                                5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 10(4P16.3) MUTATED                                                                        8
  DEL PEAK 10(4P16.3) WILD-TYPE                                                                     27
D36V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 10(4P16.3) MUTATED    1 17 21  5
  DEL PEAK 10(4P16.3) WILD-TYPE  5 36 38 28
D36V5, multiclass
    clus
vv   DEL PEAK 10(4P16.3) MUTATED DEL PEAK 10(4P16.3) WILD-TYPE
  T1                           1                             5
  T2                          17                            36
  T3                          21                            38
  T4                           5                            28
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 10(4P16.3) MUTATED   13 18  8  6
  DEL PEAK 10(4P16.3) WILD-TYPE 37 39 16 13
D36V6, multiclass
    clus
vv   DEL PEAK 10(4P16.3) MUTATED DEL PEAK 10(4P16.3) WILD-TYPE
  N0                          13                            37
  N1                          18                            39
  N2                           8                            16
  N3                           6                            13
                               vv
clus                            M0 M1 MX
  DEL PEAK 10(4P16.3) MUTATED   42  2  5
  DEL PEAK 10(4P16.3) WILD-TYPE 90 16  6
D36V7, multiclass
    clus
vv   DEL PEAK 10(4P16.3) MUTATED DEL PEAK 10(4P16.3) WILD-TYPE
  M0                          42                            90
  M1                           2                            16
  MX                           5                             6
                               vv
clus                             I II III IV
  DEL PEAK 10(4P16.3) MUTATED    7 14  13  8
  DEL PEAK 10(4P16.3) WILD-TYPE 18 29  35 21
D36V8, multiclass
     clus
vv    DEL PEAK 10(4P16.3) MUTATED DEL PEAK 10(4P16.3) WILD-TYPE
  I                             7                            18
  II                           14                            29
  III                          13                            35
  IV                            8                            21
D36V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(4P16.3) MUTATED      2   47
  DEL PEAK 10(4P16.3) WILD-TYPE    3  109
     clus
vv    DEL PEAK 10(4P16.3) MUTATED DEL PEAK 10(4P16.3) WILD-TYPE
  NO                            2                             3
  YES                          47                           109

Clustering(37) Variable = Del Peak 11(4q22.1) mutation analysis
D37V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 11(4Q22.1) MUTATED   41  6
  DEL PEAK 11(4Q22.1) WILD-TYPE 67 10
  DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE 
                           47                            77 
  DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE 
                            6                            10 
$`DEL PEAK 11(4Q22.1) MUTATED`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6801 TCGA-BR-6803 TCGA-BR-7716 TCGA-BR-7717 
        1.35         0.62         1.12         0.66         0.82         0.69 
TCGA-BR-7957 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 
        0.69         0.69         0.36         0.30         0.07        20.02 
TCGA-CG-4301 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4444 
        3.02        52.96         8.05        54.05         4.01        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5720 
       19.07        12.03        18.94         7.07         1.02         0.99 
TCGA-CG-5724 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5577 TCGA-D7-5578 
       12.03        31.04         4.01        55.04         8.65         3.58 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        4.54         9.80        15.65         6.61         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6875 
        3.65         4.04         2.93         0.62         7.79        72.23 
TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-IN-7806 TCGA-IP-7968 
        0.39         0.20         3.02         6.87         2.53 

$`DEL PEAK 11(4Q22.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        0.66         0.76         0.26         1.22         1.48         0.46 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        1.25         0.13         1.05         0.16         4.54         0.99 
TCGA-BR-7901 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.95         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 
        0.26         1.18         1.55         1.48         0.76         0.82 
TCGA-CD-5801 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4441 TCGA-CG-4443 
        0.49        27.02        15.95         1.02        14.01        29.98 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 
       21.99         1.02         8.98        12.00         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        6.94         1.02         1.02         5.98         0.95        70.06 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-6520 
       15.02        28.96        65.10        21.07         7.99         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6817 TCGA-D7-6822 
        8.19         6.90         0.69         5.95         4.70         4.27 
TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7808 
        6.54         2.01         3.58        26.43         3.55 

  DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE 
                         0.07                          0.10 
  DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE 
                        72.23                         70.06 
  DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE 
                         4.01                          1.22 
[1] "0.1 - 72.2 (4.0)" "0.1 - 70.1 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 11(4Q22.1) WILD-TYPE" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
  "DEL PEAK 11(4Q22.1) MUTATED"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK 11(4Q22.1) MUTATED" "DEL PEAK 11(4Q22.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 11(4Q22.1) WILD-TYPE"   "DEL PEAK 11(4Q22.1) MUTATED" 
[1] "hr=" "1.8"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(4Q22.1) MUTATED     23   37
  DEL PEAK 11(4Q22.1) WILD-TYPE   42   59
        clus
vv       DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  FEMALE                          23                            42
  MALE                            37                            59
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 11(4Q22.1) MUTATED                                       8
  DEL PEAK 11(4Q22.1) WILD-TYPE                                    11
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 11(4Q22.1) MUTATED                                                       23
  DEL PEAK 11(4Q22.1) WILD-TYPE                                                     56
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 11(4Q22.1) MUTATED                                           0
  DEL PEAK 11(4Q22.1) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 11(4Q22.1) MUTATED                                                   5
  DEL PEAK 11(4Q22.1) WILD-TYPE                                                 4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 11(4Q22.1) MUTATED                                                    2
  DEL PEAK 11(4Q22.1) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 11(4Q22.1) MUTATED                                                  7
  DEL PEAK 11(4Q22.1) WILD-TYPE                                                3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 11(4Q22.1) MUTATED                                                                       13
  DEL PEAK 11(4Q22.1) WILD-TYPE                                                                     22
D37V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 11(4Q22.1) MUTATED    0 24 23  8
  DEL PEAK 11(4Q22.1) WILD-TYPE  6 29 36 25
D37V5, multiclass
    clus
vv   DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  T1                           0                             6
  T2                          24                            29
  T3                          23                            36
  T4                           8                            25
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 11(4Q22.1) MUTATED   15 21  9 11
  DEL PEAK 11(4Q22.1) WILD-TYPE 35 36 15  8
D37V6, multiclass
    clus
vv   DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  N0                          15                            35
  N1                          21                            36
  N2                           9                            15
  N3                          11                             8
                               vv
clus                            M0 M1 MX
  DEL PEAK 11(4Q22.1) MUTATED   49  6  5
  DEL PEAK 11(4Q22.1) WILD-TYPE 83 12  6
D37V7, multiclass
    clus
vv   DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  M0                          49                            83
  M1                           6                            12
  MX                           5                             6
                               vv
clus                             I II III IV
  DEL PEAK 11(4Q22.1) MUTATED    8 17  15 14
  DEL PEAK 11(4Q22.1) WILD-TYPE 17 26  33 15
D37V8, multiclass
     clus
vv    DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  I                             8                            17
  II                           17                            26
  III                          15                            33
  IV                           14                            15
D37V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(4Q22.1) MUTATED      4   56
  DEL PEAK 11(4Q22.1) WILD-TYPE    1  100
     clus
vv    DEL PEAK 11(4Q22.1) MUTATED DEL PEAK 11(4Q22.1) WILD-TYPE
  NO                            4                             1
  YES                          56                           100

Clustering(38) Variable = Del Peak 12(4q35.1) mutation analysis
D38V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 12(4Q35.1) MUTATED   43  4
  DEL PEAK 12(4Q35.1) WILD-TYPE 65 12
  DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE 
                           47                            77 
  DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE 
                            4                            12 
$`DEL PEAK 12(4Q35.1) MUTATED`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-6709 TCGA-BR-6803 TCGA-BR-7197 
        1.35         0.62         1.71         1.22         0.66         1.48 
TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-CD-5799 
        1.05         0.69         4.54         0.99         0.69         0.69 
TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 
        0.36         0.30         0.07        20.02         3.02        27.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4444 
       52.96         8.05        54.05         4.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-4477 TCGA-CG-5717 TCGA-CG-5719 
       19.07        12.03        18.94         1.02         6.94         1.02 
TCGA-CG-5725 TCGA-CG-5727 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6525 TCGA-D7-6526 
       15.02        31.04         3.58         9.80         5.95         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 TCGA-D7-6822 
        4.14         1.68         3.65         4.70         2.93         4.27 
TCGA-EQ-5647 TCGA-EQ-8122 TCGA-FP-7829 TCGA-FP-7916 TCGA-IP-7968 
        0.62         7.79         0.20         3.02         2.53 

$`DEL PEAK 12(4Q35.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 
        0.82         0.62         2.17         0.99         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 
        0.76         0.26         1.22         0.46         1.25         0.13 
TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7901 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        0.82         0.16         0.95         0.16         1.08         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        1.32         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.26         0.43         0.26         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5801 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4441 
        0.76         0.82         0.49        15.95         1.02        14.01 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
       21.99         1.02         8.98         7.07        12.00         1.02 
TCGA-CG-5716 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       12.03        28.96        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
        7.99         8.65         4.54        15.65         9.63         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6818 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        6.90         0.69         4.04         6.54         2.01        72.23 
TCGA-FP-7735 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
        0.39         3.58        26.43         6.87         3.55 

  DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE 
                         0.07                          0.10 
  DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE 
                        54.05                         72.23 
  DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE 
                         3.58                          1.18 
[1] "0.1 - 54.0 (3.6)" "0.1 - 72.2 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 12(4Q35.1) MUTATED"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
  "DEL PEAK 12(4Q35.1) MUTATED" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 12(4Q35.1) WILD-TYPE" "DEL PEAK 12(4Q35.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 12(4Q35.1) WILD-TYPE"   "DEL PEAK 12(4Q35.1) MUTATED" 
[1] "hr=" "2.3"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(4Q35.1) MUTATED     21   38
  DEL PEAK 12(4Q35.1) WILD-TYPE   44   58
        clus
vv       DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  FEMALE                          21                            44
  MALE                            38                            58
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 12(4Q35.1) MUTATED                                       5
  DEL PEAK 12(4Q35.1) WILD-TYPE                                    14
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 12(4Q35.1) MUTATED                                                       25
  DEL PEAK 12(4Q35.1) WILD-TYPE                                                     54
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 12(4Q35.1) MUTATED                                           0
  DEL PEAK 12(4Q35.1) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 12(4Q35.1) MUTATED                                                   4
  DEL PEAK 12(4Q35.1) WILD-TYPE                                                 5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 12(4Q35.1) MUTATED                                                    2
  DEL PEAK 12(4Q35.1) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 12(4Q35.1) MUTATED                                                  8
  DEL PEAK 12(4Q35.1) WILD-TYPE                                                2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 12(4Q35.1) MUTATED                                                                       13
  DEL PEAK 12(4Q35.1) WILD-TYPE                                                                     22
D38V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 12(4Q35.1) MUTATED    1 22 24  7
  DEL PEAK 12(4Q35.1) WILD-TYPE  5 31 35 26
D38V5, multiclass
    clus
vv   DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  T1                           1                             5
  T2                          22                            31
  T3                          24                            35
  T4                           7                            26
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 12(4Q35.1) MUTATED   19 17 12  7
  DEL PEAK 12(4Q35.1) WILD-TYPE 31 40 12 12
D38V6, multiclass
    clus
vv   DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  N0                          19                            31
  N1                          17                            40
  N2                          12                            12
  N3                           7                            12
                               vv
clus                            M0 M1 MX
  DEL PEAK 12(4Q35.1) MUTATED   50  5  4
  DEL PEAK 12(4Q35.1) WILD-TYPE 82 13  7
D38V7, multiclass
    clus
vv   DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  M0                          50                            82
  M1                           5                            13
  MX                           4                             7
                               vv
clus                             I II III IV
  DEL PEAK 12(4Q35.1) MUTATED    9 22  13  9
  DEL PEAK 12(4Q35.1) WILD-TYPE 16 21  35 20
D38V8, multiclass
     clus
vv    DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  I                             9                            16
  II                           22                            21
  III                          13                            35
  IV                            9                            20
D38V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(4Q35.1) MUTATED      3   56
  DEL PEAK 12(4Q35.1) WILD-TYPE    2  100
     clus
vv    DEL PEAK 12(4Q35.1) MUTATED DEL PEAK 12(4Q35.1) WILD-TYPE
  NO                            3                             2
  YES                          56                           100

Clustering(39) Variable = Del Peak 13(5q11.2) mutation analysis
D39V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 13(5Q11.2) MUTATED   32  5
  DEL PEAK 13(5Q11.2) WILD-TYPE 76 11
  DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE 
                           37                            87 
  DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE 
                            5                            11 
$`DEL PEAK 13(5Q11.2) MUTATED`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7901 
        1.35         0.62         1.22         1.05         0.82         0.95 
TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5802 TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4440 
        0.36         0.49         0.30        27.02        52.96         4.01 
TCGA-CG-4441 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-4477 
       14.01        47.05        19.07        12.03        18.94         1.02 
TCGA-CG-5718 TCGA-CG-5725 TCGA-CG-5732 TCGA-D7-5579 TCGA-D7-6520 TCGA-D7-6525 
        1.02        15.02        55.04         4.54         9.63         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 
        6.61         4.14         1.68         3.65         4.70         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6875 TCGA-FP-7829 TCGA-IN-7806 
        4.27         0.62         7.79        72.23         0.20         6.87 
TCGA-IP-7968 
        2.53 

$`DEL PEAK 13(5Q11.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 
        0.82         0.62         1.71         2.17         0.99         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 
        0.46         1.25         0.13         0.69         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.99         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4305 
        0.82         0.69         0.07        20.02         3.02        15.95 
TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4443 TCGA-CG-4460 TCGA-CG-4462 
        1.02         8.05        54.05        29.98        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 
        8.98         7.07        12.00         1.02         1.02         6.94 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 
       28.96        31.04        65.10         4.01        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6522 
        8.65         3.58         9.80        15.65         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6818 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7916 
        0.69         4.04         6.54         2.01         0.39         3.02 
TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7808 
        3.58        26.43         3.55 

  DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE 
                         0.20                          0.07 
  DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE 
                        72.23                         70.06 
  DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE 
                         4.14                          1.25 
[1] "0.2 - 72.2 (4.1)" "0.1 - 70.1 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 13(5Q11.2) MUTATED"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 13(5Q11.2) MUTATED" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 13(5Q11.2) WILD-TYPE" "DEL PEAK 13(5Q11.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 13(5Q11.2) WILD-TYPE"   "DEL PEAK 13(5Q11.2) MUTATED" 
[1] "hr=" "1.7"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(5Q11.2) MUTATED     17   28
  DEL PEAK 13(5Q11.2) WILD-TYPE   48   68
        clus
vv       DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  FEMALE                          17                            48
  MALE                            28                            68
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 13(5Q11.2) MUTATED                                       2
  DEL PEAK 13(5Q11.2) WILD-TYPE                                    17
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 13(5Q11.2) MUTATED                                                       19
  DEL PEAK 13(5Q11.2) WILD-TYPE                                                     60
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 13(5Q11.2) MUTATED                                           0
  DEL PEAK 13(5Q11.2) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 13(5Q11.2) MUTATED                                                   5
  DEL PEAK 13(5Q11.2) WILD-TYPE                                                 4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 13(5Q11.2) MUTATED                                                    2
  DEL PEAK 13(5Q11.2) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 13(5Q11.2) MUTATED                                                  7
  DEL PEAK 13(5Q11.2) WILD-TYPE                                                3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 13(5Q11.2) MUTATED                                                                        8
  DEL PEAK 13(5Q11.2) WILD-TYPE                                                                     27
D39V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 13(5Q11.2) MUTATED    1 21 18  2
  DEL PEAK 13(5Q11.2) WILD-TYPE  5 32 41 31
D39V5, multiclass
    clus
vv   DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  T1                           1                             5
  T2                          21                            32
  T3                          18                            41
  T4                           2                            31
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 13(5Q11.2) MUTATED   12 16  9  5
  DEL PEAK 13(5Q11.2) WILD-TYPE 38 41 15 14
D39V6, multiclass
    clus
vv   DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  N0                          12                            38
  N1                          16                            41
  N2                           9                            15
  N3                           5                            14
                               vv
clus                            M0 M1 MX
  DEL PEAK 13(5Q11.2) MUTATED   41  2  2
  DEL PEAK 13(5Q11.2) WILD-TYPE 91 16  9
D39V7, multiclass
    clus
vv   DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  M0                          41                            91
  M1                           2                            16
  MX                           2                             9
                               vv
clus                             I II III IV
  DEL PEAK 13(5Q11.2) MUTATED    8 13  15  5
  DEL PEAK 13(5Q11.2) WILD-TYPE 17 30  33 24
D39V8, multiclass
     clus
vv    DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  I                             8                            17
  II                           13                            30
  III                          15                            33
  IV                            5                            24
D39V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(5Q11.2) MUTATED      2   43
  DEL PEAK 13(5Q11.2) WILD-TYPE    3  113
     clus
vv    DEL PEAK 13(5Q11.2) MUTATED DEL PEAK 13(5Q11.2) WILD-TYPE
  NO                            2                             3
  YES                          43                           113

Clustering(40) Variable = Del Peak 14(6p25.3) mutation analysis
D40V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 14(6P25.3) MUTATED   24  2
  DEL PEAK 14(6P25.3) WILD-TYPE 84 14
  DEL PEAK 14(6P25.3) MUTATED DEL PEAK 14(6P25.3) WILD-TYPE 
                           26                            98 
  DEL PEAK 14(6P25.3) MUTATED DEL PEAK 14(6P25.3) WILD-TYPE 
                            2                            14 
$`DEL PEAK 14(6P25.3) MUTATED`
TCGA-B7-5816 TCGA-BR-6458 TCGA-BR-6709 TCGA-BR-6803 TCGA-BR-7716 TCGA-BR-7901 
        5.62         1.35         1.22         0.66         0.82         0.95 
TCGA-CD-5800 TCGA-CD-5802 TCGA-CG-4437 TCGA-CG-4466 TCGA-CG-4477 TCGA-CG-5719 
        0.36         0.30         8.05        18.94         1.02         1.02 
TCGA-CG-5724 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-6518 
       12.03        31.04        65.10        55.04         3.58         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6528 TCGA-D7-6815 
       15.65         9.63         8.19         5.95         1.68         3.65 
TCGA-D7-6822 TCGA-HJ-7597 
        4.27        26.43 

$`DEL PEAK 14(6P25.3) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 
        0.10         0.95         1.41         1.35         0.85         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 
        0.62         0.62         1.71         2.17         0.99         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        1.12         0.76         0.26         1.22         1.48         0.46 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 
        1.25         0.13         1.05         0.69         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.99         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 
        0.82         0.69         0.49         0.07        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 
       27.02        15.95         1.02        52.96        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 
        1.02         8.98         7.07        12.00         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        6.94         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       15.02        28.96         4.01        21.07         7.99         8.65 
TCGA-D7-5579 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6817 
        4.54         6.90         0.69         6.61         4.14         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 
        4.04         2.93         0.62         7.79         6.54         2.01 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-IN-7806 
       72.23         0.39         0.20         3.02         3.58         6.87 
TCGA-IN-7808 TCGA-IP-7968 
        3.55         2.53 

  DEL PEAK 14(6P25.3) MUTATED DEL PEAK 14(6P25.3) WILD-TYPE 
                         0.30                          0.07 
  DEL PEAK 14(6P25.3) MUTATED DEL PEAK 14(6P25.3) WILD-TYPE 
                        65.10                         72.23 
  DEL PEAK 14(6P25.3) MUTATED DEL PEAK 14(6P25.3) WILD-TYPE 
                        4.945                         1.335 
[1] "0.3 - 65.1 (4.9)" "0.1 - 72.2 (1.3)"
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 14(6P25.3) MUTATED"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 14(6P25.3) MUTATED"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 14(6P25.3) MUTATED"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 14(6P25.3) MUTATED"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-CG-5728                    TCGA-CG-5730 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 14(6P25.3) MUTATED"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 14(6P25.3) MUTATED"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 14(6P25.3) WILD-TYPE"   "DEL PEAK 14(6P25.3) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
  "DEL PEAK 14(6P25.3) MUTATED" "DEL PEAK 14(6P25.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 14(6P25.3) WILD-TYPE" "DEL PEAK 14(6P25.3) WILD-TYPE" 
[1] "hr=" "2.8"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(6P25.3) MUTATED     17   17
  DEL PEAK 14(6P25.3) WILD-TYPE   48   79
        clus
vv       DEL PEAK 14(6P25.3) MUTATED DEL PEAK 14(6P25.3) WILD-TYPE
  FEMALE                          17                            48
  MALE                            17                            79
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 14(6P25.3) MUTATED                                       7
  DEL PEAK 14(6P25.3) WILD-TYPE                                    12
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 14(6P25.3) MUTATED                                                       11
  DEL PEAK 14(6P25.3) WILD-TYPE                                                     68
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 14(6P25.3) MUTATED                                           1
  DEL PEAK 14(6P25.3) WILD-TYPE                                         0
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 14(6P25.3) MUTATED                                                   1
  DEL PEAK 14(6P25.3) WILD-TYPE                                                 8
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 14(6P25.3) MUTATED                                                    1
  DEL PEAK 14(6P25.3) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 14(6P25.3) MUTATED                                                  6
  DEL PEAK 14(6P25.3) WILD-TYPE                                                4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 14(6P25.3) MUTATED                                                                        7
  DEL PEAK 14(6P25.3) WILD-TYPE                                                                     28
D40V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 14(6P25.3) MUTATED    0 16 13  3
  DEL PEAK 14(6P25.3) WILD-TYPE  6 37 46 30
D40V5, multiclass
    clus
vv   DEL PEAK 14(6P25.3) MUTATED DEL PEAK 14(6P25.3) WILD-TYPE
  T1                           0                             6
  T2                          16                            37
  T3                          13                            46
  T4                           3                            30
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 14(6P25.3) MUTATED   12  7  6  4
  DEL PEAK 14(6P25.3) WILD-TYPE 38 50 18 15
D40V6, multiclass
    clus
vv   DEL PEAK 14(6P25.3) MUTATED DEL PEAK 14(6P25.3) WILD-TYPE
  N0                          12                            38
  N1                           7                            50
  N2                           6                            18
  N3                           4                            15
                               vv
clus                             M0  M1  MX
  DEL PEAK 14(6P25.3) MUTATED    28   2   4
  DEL PEAK 14(6P25.3) WILD-TYPE 104  16   7
D40V7, multiclass
    clus
vv   DEL PEAK 14(6P25.3) MUTATED DEL PEAK 14(6P25.3) WILD-TYPE
  M0                          28                           104
  M1                           2                            16
  MX                           4                             7
                               vv
clus                             I II III IV
  DEL PEAK 14(6P25.3) MUTATED    6  8   9  6
  DEL PEAK 14(6P25.3) WILD-TYPE 19 35  39 23
D40V8, multiclass
     clus
vv    DEL PEAK 14(6P25.3) MUTATED DEL PEAK 14(6P25.3) WILD-TYPE
  I                             6                            19
  II                            8                            35
  III                           9                            39
  IV                            6                            23
D40V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(6P25.3) MUTATED      1   33
  DEL PEAK 14(6P25.3) WILD-TYPE    4  123
     clus
vv    DEL PEAK 14(6P25.3) MUTATED DEL PEAK 14(6P25.3) WILD-TYPE
  NO                            1                             4
  YES                          33                           123

Clustering(41) Variable = Del Peak 15(6q26) mutation analysis
D41V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 15(6Q26) MUTATED   21  6
  DEL PEAK 15(6Q26) WILD-TYPE 87 10
  DEL PEAK 15(6Q26) MUTATED DEL PEAK 15(6Q26) WILD-TYPE 
                         27                          97 
  DEL PEAK 15(6Q26) MUTATED DEL PEAK 15(6Q26) WILD-TYPE 
                          6                          10 
$`DEL PEAK 15(6Q26) MUTATED`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 
        1.35         0.62         1.22         0.82         0.16         4.54 
TCGA-CD-5800 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4437 TCGA-CG-4440 
        0.36         0.07         3.02        15.95         8.05         4.01 
TCGA-CG-4443 TCGA-CG-4455 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-5717 TCGA-CG-5719 
       29.98        12.03         7.07        12.00         6.94         1.02 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-6519 TCGA-D7-6521 
       12.03        15.02        55.04         3.58        15.65         8.19 
TCGA-D7-6525 TCGA-D7-6526 TCGA-HJ-7597 
        5.95         6.61        26.43 

$`DEL PEAK 15(6Q26) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 
        0.82         0.62         1.71         2.17         0.99         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7851 
        0.46         1.25         0.13         1.05         0.69         0.99 
TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.95         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5802 TCGA-CG-4300 TCGA-CG-4304 
        0.82         0.69         0.49         0.30        20.02        27.02 
TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4444 TCGA-CG-4449 
        1.02        52.96        54.05        14.01        47.05        19.07 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4474 TCGA-CG-4477 
       21.99         1.02         8.98        18.94         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 
       28.96        31.04        65.10         4.01        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 
        8.65         4.54         9.80         9.63         6.90         0.69 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        4.27         0.62         7.79         6.54         2.01        72.23 
TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-IN-7806 TCGA-IN-7808 
        0.39         0.20         3.02         3.58         6.87         3.55 
TCGA-IP-7968 
        2.53 

  DEL PEAK 15(6Q26) MUTATED DEL PEAK 15(6Q26) WILD-TYPE 
                       0.07                        0.10 
  DEL PEAK 15(6Q26) MUTATED DEL PEAK 15(6Q26) WILD-TYPE 
                      55.04                       72.23 
  DEL PEAK 15(6Q26) MUTATED DEL PEAK 15(6Q26) WILD-TYPE 
                       6.61                        1.25 
[1] "0.1 - 55.0 (6.6)" "0.1 - 72.2 (1.2)"
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4469                  TCGA-CG-4472 
  "DEL PEAK 15(6Q26) MUTATED"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 15(6Q26) MUTATED"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 15(6Q26) MUTATED"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4469                  TCGA-CG-4472 
  "DEL PEAK 15(6Q26) MUTATED"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 15(6Q26) MUTATED"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 15(6Q26) MUTATED"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-4469                  TCGA-CG-4472 
  "DEL PEAK 15(6Q26) MUTATED"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 15(6Q26) MUTATED"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
"DEL PEAK 15(6Q26) WILD-TYPE"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 15(6Q26) MUTATED"   "DEL PEAK 15(6Q26) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
  "DEL PEAK 15(6Q26) MUTATED" "DEL PEAK 15(6Q26) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 15(6Q26) WILD-TYPE" "DEL PEAK 15(6Q26) WILD-TYPE" 
[1] "hr=" "1.6"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 15(6Q26) MUTATED     14   21
  DEL PEAK 15(6Q26) WILD-TYPE   51   75
        clus
vv       DEL PEAK 15(6Q26) MUTATED DEL PEAK 15(6Q26) WILD-TYPE
  FEMALE                        14                          51
  MALE                          21                          75
                             vv
clus                          STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 15(6Q26) MUTATED                                       5
  DEL PEAK 15(6Q26) WILD-TYPE                                    14
                             vv
clus                          STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 15(6Q26) MUTATED                                                       16
  DEL PEAK 15(6Q26) WILD-TYPE                                                     63
                             vv
clus                          STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 15(6Q26) MUTATED                                           1
  DEL PEAK 15(6Q26) WILD-TYPE                                         0
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 15(6Q26) MUTATED                                                   2
  DEL PEAK 15(6Q26) WILD-TYPE                                                 7
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 15(6Q26) MUTATED                                                    1
  DEL PEAK 15(6Q26) WILD-TYPE                                                  2
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 15(6Q26) MUTATED                                                  3
  DEL PEAK 15(6Q26) WILD-TYPE                                                7
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 15(6Q26) MUTATED                                                                        6
  DEL PEAK 15(6Q26) WILD-TYPE                                                                     29
D41V4, multiclass
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK 15(6Q26) MUTATED    1 13 15  5
  DEL PEAK 15(6Q26) WILD-TYPE  5 40 44 28
D41V5, multiclass
    clus
vv   DEL PEAK 15(6Q26) MUTATED DEL PEAK 15(6Q26) WILD-TYPE
  T1                         1                           5
  T2                        13                          40
  T3                        15                          44
  T4                         5                          28
                             vv
clus                          N0 N1 N2 N3
  DEL PEAK 15(6Q26) MUTATED    8 14  6  6
  DEL PEAK 15(6Q26) WILD-TYPE 42 43 18 13
D41V6, multiclass
    clus
vv   DEL PEAK 15(6Q26) MUTATED DEL PEAK 15(6Q26) WILD-TYPE
  N0                         8                          42
  N1                        14                          43
  N2                         6                          18
  N3                         6                          13
                             vv
clus                           M0  M1  MX
  DEL PEAK 15(6Q26) MUTATED    29   4   2
  DEL PEAK 15(6Q26) WILD-TYPE 103  14   9
D41V7, multiclass
    clus
vv   DEL PEAK 15(6Q26) MUTATED DEL PEAK 15(6Q26) WILD-TYPE
  M0                        29                         103
  M1                         4                          14
  MX                         2                           9
                             vv
clus                           I II III IV
  DEL PEAK 15(6Q26) MUTATED    4 10  10  9
  DEL PEAK 15(6Q26) WILD-TYPE 21 33  38 20
D41V8, multiclass
     clus
vv    DEL PEAK 15(6Q26) MUTATED DEL PEAK 15(6Q26) WILD-TYPE
  I                           4                          21
  II                         10                          33
  III                        10                          38
  IV                          9                          20
D41V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 15(6Q26) MUTATED      2   33
  DEL PEAK 15(6Q26) WILD-TYPE    3  123
     clus
vv    DEL PEAK 15(6Q26) MUTATED DEL PEAK 15(6Q26) WILD-TYPE
  NO                          2                           3
  YES                        33                         123

Clustering(42) Variable = Del Peak 16(6q27) mutation analysis
D42V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 16(6Q27) MUTATED   21  5
  DEL PEAK 16(6Q27) WILD-TYPE 87 11
  DEL PEAK 16(6Q27) MUTATED DEL PEAK 16(6Q27) WILD-TYPE 
                         26                          98 
  DEL PEAK 16(6Q27) MUTATED DEL PEAK 16(6Q27) WILD-TYPE 
                          5                          11 
$`DEL PEAK 16(6Q27) MUTATED`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7723 
        1.35         0.62         1.22         0.82         0.16         4.54 
TCGA-CD-5800 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4443 
        0.36         0.07         3.02         8.05         4.01        29.98 
TCGA-CG-4455 TCGA-CG-4472 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5725 
       12.03        12.00         6.94         1.02        12.03        15.02 
TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6525 
       55.04         3.58        15.65         9.63         8.19         5.95 
TCGA-D7-6526 TCGA-HJ-7597 
        6.61        26.43 

$`DEL PEAK 16(6Q27) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 
        0.82         0.62         1.71         2.17         0.99         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7851 
        0.46         1.25         0.13         1.05         0.69         0.99 
TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.95         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5802 TCGA-CG-4300 TCGA-CG-4304 
        0.82         0.69         0.49         0.30        20.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4444 
       15.95         1.02        52.96        54.05        14.01        47.05 
TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       19.07        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5718 TCGA-CG-5720 TCGA-CG-5721 
        1.02         1.02         1.02         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
        0.95        70.06        28.96        31.04        65.10         4.01 
TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6522 
       21.07         7.99         8.65         4.54         9.80         6.90 
TCGA-D7-6524 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
        0.69         4.14         1.68         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 
        2.93         4.27         0.62         7.79         6.54         2.01 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-IN-7806 
       72.23         0.39         0.20         3.02         3.58         6.87 
TCGA-IN-7808 TCGA-IP-7968 
        3.55         2.53 

  DEL PEAK 16(6Q27) MUTATED DEL PEAK 16(6Q27) WILD-TYPE 
                       0.07                        0.10 
  DEL PEAK 16(6Q27) MUTATED DEL PEAK 16(6Q27) WILD-TYPE 
                      55.04                       72.23 
  DEL PEAK 16(6Q27) MUTATED DEL PEAK 16(6Q27) WILD-TYPE 
                      6.280                       1.285 
[1] "0.1 - 55.0 (6.3)" "0.1 - 72.2 (1.3)"
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 16(6Q27) MUTATED"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
  "DEL PEAK 16(6Q27) MUTATED"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 16(6Q27) MUTATED"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 16(6Q27) MUTATED"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
  "DEL PEAK 16(6Q27) MUTATED"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 16(6Q27) MUTATED"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4449                  TCGA-CG-4455 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-5718                  TCGA-CG-5719 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 16(6Q27) MUTATED"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6518                  TCGA-D7-6519 
"DEL PEAK 16(6Q27) WILD-TYPE"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
  "DEL PEAK 16(6Q27) MUTATED"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 16(6Q27) MUTATED"   "DEL PEAK 16(6Q27) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-FP-7916                  TCGA-FP-7998 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
  "DEL PEAK 16(6Q27) MUTATED" "DEL PEAK 16(6Q27) WILD-TYPE" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 16(6Q27) WILD-TYPE" "DEL PEAK 16(6Q27) WILD-TYPE" 
[1] "hr=" "1.3"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 16(6Q27) MUTATED     13   21
  DEL PEAK 16(6Q27) WILD-TYPE   52   75
        clus
vv       DEL PEAK 16(6Q27) MUTATED DEL PEAK 16(6Q27) WILD-TYPE
  FEMALE                        13                          52
  MALE                          21                          75
                             vv
clus                          STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 16(6Q27) MUTATED                                       5
  DEL PEAK 16(6Q27) WILD-TYPE                                    14
                             vv
clus                          STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 16(6Q27) MUTATED                                                       15
  DEL PEAK 16(6Q27) WILD-TYPE                                                     64
                             vv
clus                          STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 16(6Q27) MUTATED                                           1
  DEL PEAK 16(6Q27) WILD-TYPE                                         0
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 16(6Q27) MUTATED                                                   2
  DEL PEAK 16(6Q27) WILD-TYPE                                                 7
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 16(6Q27) MUTATED                                                    1
  DEL PEAK 16(6Q27) WILD-TYPE                                                  2
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 16(6Q27) MUTATED                                                  4
  DEL PEAK 16(6Q27) WILD-TYPE                                                6
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 16(6Q27) MUTATED                                                                        5
  DEL PEAK 16(6Q27) WILD-TYPE                                                                     30
D42V4, multiclass
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK 16(6Q27) MUTATED    1 13 14  5
  DEL PEAK 16(6Q27) WILD-TYPE  5 40 45 28
D42V5, multiclass
    clus
vv   DEL PEAK 16(6Q27) MUTATED DEL PEAK 16(6Q27) WILD-TYPE
  T1                         1                           5
  T2                        13                          40
  T3                        14                          45
  T4                         5                          28
                             vv
clus                          N0 N1 N2 N3
  DEL PEAK 16(6Q27) MUTATED    8 12  7  5
  DEL PEAK 16(6Q27) WILD-TYPE 42 45 17 14
D42V6, multiclass
    clus
vv   DEL PEAK 16(6Q27) MUTATED DEL PEAK 16(6Q27) WILD-TYPE
  N0                         8                          42
  N1                        12                          45
  N2                         7                          17
  N3                         5                          14
                             vv
clus                           M0  M1  MX
  DEL PEAK 16(6Q27) MUTATED    27   4   3
  DEL PEAK 16(6Q27) WILD-TYPE 105  14   8
D42V7, multiclass
    clus
vv   DEL PEAK 16(6Q27) MUTATED DEL PEAK 16(6Q27) WILD-TYPE
  M0                        27                         105
  M1                         4                          14
  MX                         3                           8
                             vv
clus                           I II III IV
  DEL PEAK 16(6Q27) MUTATED    4  9  10  8
  DEL PEAK 16(6Q27) WILD-TYPE 21 34  38 21
D42V8, multiclass
     clus
vv    DEL PEAK 16(6Q27) MUTATED DEL PEAK 16(6Q27) WILD-TYPE
  I                           4                          21
  II                          9                          34
  III                        10                          38
  IV                          8                          21
D42V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 16(6Q27) MUTATED      2   32
  DEL PEAK 16(6Q27) WILD-TYPE    3  124
     clus
vv    DEL PEAK 16(6Q27) MUTATED DEL PEAK 16(6Q27) WILD-TYPE
  NO                          2                           3
  YES                        32                         124

Clustering(43) Variable = Del Peak 17(7q31.1) mutation analysis
D43V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 17(7Q31.1) MUTATED   14  1
  DEL PEAK 17(7Q31.1) WILD-TYPE 94 15
  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                           15                           109 
  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                            1                            15 
$`DEL PEAK 17(7Q31.1) MUTATED`
TCGA-BR-6564 TCGA-BR-6706 TCGA-BR-7723 TCGA-CG-4301 TCGA-CG-4437 TCGA-CG-4438 
        0.82         2.17         4.54         3.02         8.05        54.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4472 TCGA-D7-6815 TCGA-D7-6820 TCGA-EQ-8122 
       19.07        12.03        12.00         3.65         2.93         7.79 
TCGA-F1-6875 TCGA-FP-7829 TCGA-IP-7968 
       72.23         0.20         2.53 

$`DEL PEAK 17(7Q31.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6707 TCGA-BR-6709 
        0.85         0.62         0.62         1.71         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.48         0.46         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 
        0.69         0.16         0.99         0.95         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 
        1.55         1.48         0.76         0.82         0.69         0.36 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 
        0.49         0.30         0.07        20.02        27.02        15.95 
TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        1.02        52.96         4.01        14.01        29.98        47.05 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4474 
       21.99         1.02         8.98        18.94         7.07         1.02 
TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
        1.02         1.02         6.94         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 
        5.98         0.95        70.06        12.03        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       31.04        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        8.65         3.58         4.54         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 
        1.68         4.70         4.04         4.27         0.62         6.54 
TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7806 
        2.01         0.39         3.02         3.58        26.43         6.87 
TCGA-IN-7808 
        3.55 

  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                         0.20                          0.07 
  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                        72.23                         70.06 
  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                         4.54                          1.32 
[1] "0.2 - 72.2 (4.5)" "0.1 - 70.1 (1.3)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 17(7Q31.1) MUTATED" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 17(7Q31.1) MUTATED"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 17(7Q31.1) MUTATED"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 17(7Q31.1) MUTATED" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 17(7Q31.1) MUTATED" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 17(7Q31.1) MUTATED" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 17(7Q31.1) MUTATED"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 17(7Q31.1) MUTATED"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 17(7Q31.1) MUTATED" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 17(7Q31.1) MUTATED" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 17(7Q31.1) MUTATED" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 17(7Q31.1) MUTATED"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 17(7Q31.1) MUTATED"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 17(7Q31.1) MUTATED" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 17(7Q31.1) MUTATED" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 17(7Q31.1) WILD-TYPE" "DEL PEAK 17(7Q31.1) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 17(7Q31.1) WILD-TYPE"   "DEL PEAK 17(7Q31.1) MUTATED" 
[1] "hr="     "2.4e+08"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 17(7Q31.1) MUTATED      5   14
  DEL PEAK 17(7Q31.1) WILD-TYPE   60   82
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  FEMALE                           5                            60
  MALE                            14                            82
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 17(7Q31.1) MUTATED                                       0
  DEL PEAK 17(7Q31.1) WILD-TYPE                                    19
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 17(7Q31.1) MUTATED                                                        9
  DEL PEAK 17(7Q31.1) WILD-TYPE                                                     70
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 17(7Q31.1) MUTATED                                           0
  DEL PEAK 17(7Q31.1) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 17(7Q31.1) MUTATED                                                   3
  DEL PEAK 17(7Q31.1) WILD-TYPE                                                 6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 17(7Q31.1) MUTATED                                                    0
  DEL PEAK 17(7Q31.1) WILD-TYPE                                                  3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 17(7Q31.1) MUTATED                                                  2
  DEL PEAK 17(7Q31.1) WILD-TYPE                                                8
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 17(7Q31.1) MUTATED                                                                        3
  DEL PEAK 17(7Q31.1) WILD-TYPE                                                                     32
D43V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 17(7Q31.1) MUTATED    0  6  9  3
  DEL PEAK 17(7Q31.1) WILD-TYPE  6 47 50 30
D43V5, multiclass
    clus
vv   DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  T1                           0                             6
  T2                           6                            47
  T3                           9                            50
  T4                           3                            30
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 17(7Q31.1) MUTATED    1 13  4  0
  DEL PEAK 17(7Q31.1) WILD-TYPE 49 44 20 19
D43V6, multiclass
    clus
vv   DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  N0                           1                            49
  N1                          13                            44
  N2                           4                            20
  N3                           0                            19
                               vv
clus                             M0  M1  MX
  DEL PEAK 17(7Q31.1) MUTATED    16   1   2
  DEL PEAK 17(7Q31.1) WILD-TYPE 116  17   9
D43V7, multiclass
    clus
vv   DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  M0                          16                           116
  M1                           1                            17
  MX                           2                             9
                               vv
clus                             I II III IV
  DEL PEAK 17(7Q31.1) MUTATED    1  7   7  3
  DEL PEAK 17(7Q31.1) WILD-TYPE 24 36  41 26
D43V8, multiclass
     clus
vv    DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  I                             1                            24
  II                            7                            36
  III                           7                            41
  IV                            3                            26
D43V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 17(7Q31.1) MUTATED      0   19
  DEL PEAK 17(7Q31.1) WILD-TYPE    5  137
     clus
vv    DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  NO                            0                             5
  YES                          19                           137

Clustering(44) Variable = Del Peak 18(7q36.3) mutation analysis
D44V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 18(7Q36.3) MUTATED   21  1
  DEL PEAK 18(7Q36.3) WILD-TYPE 87 15
  DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE 
                           22                           102 
  DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE 
                            1                            15 
$`DEL PEAK 18(7Q36.3) MUTATED`
TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-7723 TCGA-BR-7901 TCGA-CD-5802 TCGA-CG-4301 
        1.35         0.82         4.54         0.95         0.30         3.02 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4472 TCGA-CG-5724 
        8.05        54.05        19.07        12.03        12.00        12.03 
TCGA-D7-6519 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 
       15.65         5.95         6.61         3.65         4.70         4.04 
TCGA-D7-6820 TCGA-EQ-8122 TCGA-FP-7829 TCGA-IN-7808 
        2.93         7.79         0.20         3.55 

$`DEL PEAK 18(7Q36.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.48         0.46         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.69         0.16         0.99         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 
        1.48         0.76         0.82         0.69         0.36         0.49 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
        0.07        20.02        27.02        15.95         1.02        52.96 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4460 TCGA-CG-4462 
        4.01        14.01        29.98        47.05        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
        8.98        18.94         7.07         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       70.06        15.02        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6527 
        9.80         9.63         8.19         6.90         0.69         4.14 
TCGA-D7-6528 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        1.68         4.27         0.62         6.54         2.01        72.23 
TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
        0.39         3.02         3.58        26.43         6.87         2.53 

  DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE 
                         0.20                          0.07 
  DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE 
                        54.05                         72.23 
  DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE 
                        4.620                         1.235 
[1] "0.2 - 54.0 (4.6)" "0.1 - 72.2 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
  "DEL PEAK 18(7Q36.3) MUTATED"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 18(7Q36.3) WILD-TYPE"   "DEL PEAK 18(7Q36.3) MUTATED" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 18(7Q36.3) WILD-TYPE" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 18(7Q36.3) MUTATED" "DEL PEAK 18(7Q36.3) WILD-TYPE" 
[1] "hr=" "3.1"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(7Q36.3) MUTATED      9   20
  DEL PEAK 18(7Q36.3) WILD-TYPE   56   76
        clus
vv       DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE
  FEMALE                           9                            56
  MALE                            20                            76
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 18(7Q36.3) MUTATED                                       5
  DEL PEAK 18(7Q36.3) WILD-TYPE                                    14
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 18(7Q36.3) MUTATED                                                       12
  DEL PEAK 18(7Q36.3) WILD-TYPE                                                     67
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 18(7Q36.3) MUTATED                                           0
  DEL PEAK 18(7Q36.3) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 18(7Q36.3) MUTATED                                                   3
  DEL PEAK 18(7Q36.3) WILD-TYPE                                                 6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 18(7Q36.3) MUTATED                                                    0
  DEL PEAK 18(7Q36.3) WILD-TYPE                                                  3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 18(7Q36.3) MUTATED                                                  4
  DEL PEAK 18(7Q36.3) WILD-TYPE                                                6
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 18(7Q36.3) MUTATED                                                                        3
  DEL PEAK 18(7Q36.3) WILD-TYPE                                                                     32
D44V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 18(7Q36.3) MUTATED    0  9 15  3
  DEL PEAK 18(7Q36.3) WILD-TYPE  6 44 44 30
D44V5, multiclass
    clus
vv   DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE
  T1                           0                             6
  T2                           9                            44
  T3                          15                            44
  T4                           3                            30
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 18(7Q36.3) MUTATED    2 16  5  4
  DEL PEAK 18(7Q36.3) WILD-TYPE 48 41 19 15
D44V6, multiclass
    clus
vv   DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE
  N0                           2                            48
  N1                          16                            41
  N2                           5                            19
  N3                           4                            15
                               vv
clus                             M0  M1  MX
  DEL PEAK 18(7Q36.3) MUTATED    25   3   1
  DEL PEAK 18(7Q36.3) WILD-TYPE 107  15  10
D44V7, multiclass
    clus
vv   DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE
  M0                          25                           107
  M1                           3                            15
  MX                           1                            10
                               vv
clus                             I II III IV
  DEL PEAK 18(7Q36.3) MUTATED    0 11  11  5
  DEL PEAK 18(7Q36.3) WILD-TYPE 25 32  37 24
D44V8, multiclass
     clus
vv    DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE
  I                             0                            25
  II                           11                            32
  III                          11                            37
  IV                            5                            24
D44V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 18(7Q36.3) MUTATED      1   28
  DEL PEAK 18(7Q36.3) WILD-TYPE    4  128
     clus
vv    DEL PEAK 18(7Q36.3) MUTATED DEL PEAK 18(7Q36.3) WILD-TYPE
  NO                            1                             4
  YES                          28                           128

Clustering(45) Variable = Del Peak 19(8p23.2) mutation analysis
D45V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 19(8P23.2) MUTATED   27  4
  DEL PEAK 19(8P23.2) WILD-TYPE 81 12
  DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE 
                           31                            93 
  DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE 
                            4                            12 
$`DEL PEAK 19(8P23.2) MUTATED`
TCGA-BR-6457 TCGA-BR-6565 TCGA-BR-6705 TCGA-BR-6709 TCGA-BR-7197 TCGA-BR-7715 
        1.35         0.62         1.71         1.22         1.48         1.05 
TCGA-BR-7716 TCGA-BR-7723 TCGA-CD-5800 TCGA-CD-5802 TCGA-CG-4301 TCGA-CG-4436 
        0.82         4.54         0.36         0.30         3.02        52.96 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-5718 
       54.05         4.01        29.98        47.05        19.07         1.02 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-6518 
       12.03        15.02         4.01        55.04         3.58         9.80 
TCGA-D7-6521 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6177 
        8.19         6.61         1.68         2.93         0.62         6.54 
TCGA-IP-7968 
        2.53 

$`DEL PEAK 19(8P23.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6458 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 
        0.82         0.62         2.17         0.99         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 
        0.76         0.66         0.26         1.22         0.46         1.25 
TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
        0.13         0.69         0.16         0.99         0.95         0.69 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.16         1.08         0.82         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.49         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 
        1.18         1.55         1.48         0.76         0.82         0.69 
TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.49         0.07        20.02        27.02        15.95         1.02 
TCGA-CG-4437 TCGA-CG-4441 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
        8.05        14.01        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 
       18.94         7.07        12.00         1.02         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        6.94         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       28.96        31.04        65.10        21.07         7.99         8.65 
TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
        4.54        15.65         9.63         6.90         0.69         5.95 
TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-8122 
        4.14         3.65         4.70         4.04         4.27         7.79 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        2.01        72.23         0.39         0.20         3.02         3.58 
TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
       26.43         6.87         3.55 

  DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE 
                         0.30                          0.07 
  DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE 
                        55.04                         72.23 
  DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE 
                         3.58                          1.22 
[1] "0.3 - 55.0 (3.6)" "0.1 - 72.2 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 19(8P23.2) MUTATED"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 19(8P23.2) MUTATED"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 19(8P23.2) MUTATED"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 19(8P23.2) MUTATED"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 19(8P23.2) MUTATED"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 19(8P23.2) MUTATED"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 19(8P23.2) MUTATED"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 19(8P23.2) MUTATED"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 19(8P23.2) MUTATED"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 19(8P23.2) MUTATED" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 19(8P23.2) WILD-TYPE" "DEL PEAK 19(8P23.2) WILD-TYPE" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 19(8P23.2) WILD-TYPE"   "DEL PEAK 19(8P23.2) MUTATED" 
[1] "hr=" "1.4"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(8P23.2) MUTATED     13   27
  DEL PEAK 19(8P23.2) WILD-TYPE   52   69
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  FEMALE                          13                            52
  MALE                            27                            69
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 19(8P23.2) MUTATED                                       4
  DEL PEAK 19(8P23.2) WILD-TYPE                                    15
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 19(8P23.2) MUTATED                                                       19
  DEL PEAK 19(8P23.2) WILD-TYPE                                                     60
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 19(8P23.2) MUTATED                                           0
  DEL PEAK 19(8P23.2) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 19(8P23.2) MUTATED                                                   2
  DEL PEAK 19(8P23.2) WILD-TYPE                                                 7
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 19(8P23.2) MUTATED                                                    1
  DEL PEAK 19(8P23.2) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 19(8P23.2) MUTATED                                                  5
  DEL PEAK 19(8P23.2) WILD-TYPE                                                5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 19(8P23.2) MUTATED                                                                        7
  DEL PEAK 19(8P23.2) WILD-TYPE                                                                     28
D45V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 19(8P23.2) MUTATED    2 13 18  5
  DEL PEAK 19(8P23.2) WILD-TYPE  4 40 41 28
D45V5, multiclass
    clus
vv   DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  T1                           2                             4
  T2                          13                            40
  T3                          18                            41
  T4                           5                            28
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 19(8P23.2) MUTATED   10 12  9  7
  DEL PEAK 19(8P23.2) WILD-TYPE 40 45 15 12
D45V6, multiclass
    clus
vv   DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  N0                          10                            40
  N1                          12                            45
  N2                           9                            15
  N3                           7                            12
                               vv
clus                            M0 M1 MX
  DEL PEAK 19(8P23.2) MUTATED   33  5  2
  DEL PEAK 19(8P23.2) WILD-TYPE 99 13  9
D45V7, multiclass
    clus
vv   DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  M0                          33                            99
  M1                           5                            13
  MX                           2                             9
                               vv
clus                             I II III IV
  DEL PEAK 19(8P23.2) MUTATED    5 13   9 10
  DEL PEAK 19(8P23.2) WILD-TYPE 20 30  39 19
D45V8, multiclass
     clus
vv    DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  I                             5                            20
  II                           13                            30
  III                           9                            39
  IV                           10                            19
D45V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 19(8P23.2) MUTATED      1   39
  DEL PEAK 19(8P23.2) WILD-TYPE    4  117
     clus
vv    DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  NO                            1                             4
  YES                          39                           117

Clustering(46) Variable = Del Peak 20(9p23) mutation analysis
D46V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 20(9P23) MUTATED   47  2
  DEL PEAK 20(9P23) WILD-TYPE 61 14
  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                         49                          75 
  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                          2                          14 
$`DEL PEAK 20(9P23) MUTATED`
TCGA-B7-5816 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6803 
        5.62         1.35         1.35         0.99         1.22         0.66 
TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 
        1.48         1.05         0.82         0.69         0.16         4.54 
TCGA-BR-7901 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4437 
        0.95         0.69         0.36         0.07         3.02         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
       54.05         4.01        29.98        47.05        19.07        12.03 
TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5723 TCGA-CG-5724 
       18.94        12.00         1.02         1.02        70.06        12.03 
TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 
        4.01        55.04         8.65         3.58         4.54         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
       15.65         9.63         8.19         5.95         6.61         4.14 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 TCGA-EQ-8122 TCGA-FP-7829 TCGA-FP-7916 
        3.65         4.70         2.93         7.79         0.20         3.02 
TCGA-IN-7806 
        6.87 

$`DEL PEAK 20(9P23) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 
        0.10         0.95         1.41         0.85         0.82         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 
        0.62         1.71         2.17         0.66         1.12         0.76 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7851 
        0.26         1.22         0.46         1.25         0.13         0.99 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.69         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 
        0.26         1.18         1.55         1.48         0.76         0.82 
TCGA-CD-5801 TCGA-CD-5802 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.49         0.30        20.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4441 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 
       52.96        14.01        21.99         1.02         8.98         7.07 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5720 TCGA-CG-5721 
        1.02         1.02         1.02         6.94         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5733 
        0.95        15.02        28.96        31.04        65.10        21.07 
TCGA-CG-5734 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6528 TCGA-D7-6818 TCGA-D7-6822 
        7.99         6.90         0.69         1.68         4.04         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7998 
        0.62         6.54         2.01        72.23         0.39         3.58 
TCGA-HJ-7597 TCGA-IN-7808 TCGA-IP-7968 
       26.43         3.55         2.53 

  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                       0.07                        0.10 
  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                      70.06                       72.23 
  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                       4.14                        1.08 
[1] "0.1 - 70.1 (4.1)" "0.1 - 72.2 (1.1)"
                 TCGA-B7-5816                  TCGA-B7-5818 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4449                  TCGA-CG-4455 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6518                  TCGA-D7-6519 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-FP-7916                  TCGA-FP-7998 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4449                  TCGA-CG-4455 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6518                  TCGA-D7-6519 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-FP-7916                  TCGA-FP-7998 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-B7-5816                  TCGA-B7-5818 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6452                  TCGA-BR-6455 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6457                  TCGA-BR-6458 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-6563                  TCGA-BR-6564 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6565                  TCGA-BR-6566 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6705                  TCGA-BR-6706 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6707                  TCGA-BR-6709 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-6710                  TCGA-BR-6801 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-6802                  TCGA-BR-6803 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-6852                  TCGA-BR-7196 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7197                  TCGA-BR-7703 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7704                  TCGA-BR-7707 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7715                  TCGA-BR-7716 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-7717                  TCGA-BR-7722 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-BR-7723                  TCGA-BR-7851 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7901                  TCGA-BR-7957 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-7958                  TCGA-BR-7959 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8059                  TCGA-BR-8060 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8077                  TCGA-BR-8078 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8080                  TCGA-BR-8081 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8284                  TCGA-BR-8285 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8286                  TCGA-BR-8289 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8291                  TCGA-BR-8295 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-BR-8296                  TCGA-BR-8297 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CD-5798                  TCGA-CD-5799 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CD-5800                  TCGA-CD-5801 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CD-5802                  TCGA-CD-5803 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4300                  TCGA-CG-4301 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4304                  TCGA-CG-4305 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4306                  TCGA-CG-4436 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4437                  TCGA-CG-4438 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4440                  TCGA-CG-4441 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4443                  TCGA-CG-4444 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4449                  TCGA-CG-4455 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4460                  TCGA-CG-4462 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-4465                  TCGA-CG-4466 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4469                  TCGA-CG-4472 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-4474                  TCGA-CG-4477 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5716                  TCGA-CG-5717 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5718                  TCGA-CG-5719 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-5720                  TCGA-CG-5721 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5722                  TCGA-CG-5723 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-5724                  TCGA-CG-5725 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5726                  TCGA-CG-5727 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5728                  TCGA-CG-5730 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-CG-5732                  TCGA-CG-5733 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-CG-5734                  TCGA-D7-5577 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-5578                  TCGA-D7-5579 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6518                  TCGA-D7-6519 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6520                  TCGA-D7-6521 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6522                  TCGA-D7-6524 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-D7-6525                  TCGA-D7-6526 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6527                  TCGA-D7-6528 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-D7-6815                  TCGA-D7-6817 
  "DEL PEAK 20(9P23) MUTATED"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6818                  TCGA-D7-6820 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-D7-6822                  TCGA-EQ-5647 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-EQ-8122                  TCGA-F1-6177 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-F1-6874                  TCGA-F1-6875 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-FP-7735                  TCGA-FP-7829 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-FP-7916                  TCGA-FP-7998 
  "DEL PEAK 20(9P23) MUTATED" "DEL PEAK 20(9P23) WILD-TYPE" 
                 TCGA-HJ-7597                  TCGA-IN-7806 
"DEL PEAK 20(9P23) WILD-TYPE"   "DEL PEAK 20(9P23) MUTATED" 
                 TCGA-IN-7808                  TCGA-IP-7968 
"DEL PEAK 20(9P23) WILD-TYPE" "DEL PEAK 20(9P23) WILD-TYPE" 
[1] "hr=" "5.5"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 20(9P23) MUTATED     25   38
  DEL PEAK 20(9P23) WILD-TYPE   40   58
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  FEMALE                        25                          40
  MALE                          38                          58
                             vv
clus                          STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 20(9P23) MUTATED                                      10
  DEL PEAK 20(9P23) WILD-TYPE                                     9
                             vv
clus                          STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 20(9P23) MUTATED                                                       26
  DEL PEAK 20(9P23) WILD-TYPE                                                     53
                             vv
clus                          STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 20(9P23) MUTATED                                           0
  DEL PEAK 20(9P23) WILD-TYPE                                         1
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 20(9P23) MUTATED                                                   5
  DEL PEAK 20(9P23) WILD-TYPE                                                 4
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 20(9P23) MUTATED                                                    2
  DEL PEAK 20(9P23) WILD-TYPE                                                  1
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 20(9P23) MUTATED                                                  7
  DEL PEAK 20(9P23) WILD-TYPE                                                3
                             vv
clus                          STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 20(9P23) MUTATED                                                                       11
  DEL PEAK 20(9P23) WILD-TYPE                                                                     24
D46V4, multiclass
                             vv
clus                          T1 T2 T3 T4
  DEL PEAK 20(9P23) MUTATED    1 23 25  9
  DEL PEAK 20(9P23) WILD-TYPE  5 30 34 24
D46V5, multiclass
    clus
vv   DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  T1                         1                           5
  T2                        23                          30
  T3                        25                          34
  T4                         9                          24
                             vv
clus                          N0 N1 N2 N3
  DEL PEAK 20(9P23) MUTATED   13 26 11  9
  DEL PEAK 20(9P23) WILD-TYPE 37 31 13 10
D46V6, multiclass
    clus
vv   DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  N0                        13                          37
  N1                        26                          31
  N2                        11                          13
  N3                         9                          10
                             vv
clus                          M0 M1 MX
  DEL PEAK 20(9P23) MUTATED   55  5  3
  DEL PEAK 20(9P23) WILD-TYPE 77 13  8
D46V7, multiclass
    clus
vv   DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  M0                        55                          77
  M1                         5                          13
  MX                         3                           8
                             vv
clus                           I II III IV
  DEL PEAK 20(9P23) MUTATED    3 21  21 12
  DEL PEAK 20(9P23) WILD-TYPE 22 22  27 17
D46V8, multiclass
     clus
vv    DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  I                           3                          22
  II                         21                          22
  III                        21                          27
  IV                         12                          17
D46V9, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK 20(9P23) MUTATED      3   60
  DEL PEAK 20(9P23) WILD-TYPE    2   96
     clus
vv    DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  NO                          3                           2
  YES                        60                          96

Clustering(47) Variable = Del Peak 21(9p21.3) mutation analysis
D47V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 21(9P21.3) MUTATED   43  6
  DEL PEAK 21(9P21.3) WILD-TYPE 65 10
  DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE 
                           49                            75 
  DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE 
                            6                            10 
$`DEL PEAK 21(9P21.3) MUTATED`
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6709 TCGA-BR-6803 TCGA-BR-7197 TCGA-BR-7715 
        1.35         1.35         1.22         0.66         1.48         1.05 
TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7901 TCGA-CD-5798 
        0.82         0.69         0.16         4.54         0.95         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4438 
        0.69         0.36         0.07         3.02        27.02        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 
        4.01        14.01        29.98        47.05        19.07        12.03 
TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4477 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 
       18.94        12.00         1.02         1.02         1.02         0.99 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-5579 
       12.03        15.02         4.01        55.04         3.58         4.54 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
       15.65         9.63         8.19         5.95         6.61         4.14 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6820 TCGA-EQ-8122 TCGA-F1-6875 TCGA-IN-7806 
        3.65         4.70         2.93         7.79        72.23         6.87 
TCGA-IP-7968 
        2.53 

$`DEL PEAK 21(9P21.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.10         0.95         1.41         0.85         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 
        0.62         0.62         1.71         2.17         0.99         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 
        1.12         0.76         0.26         1.22         0.46         1.25 
TCGA-BR-7707 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 
        0.13         0.99         0.69         0.16         1.08         0.82 
TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 
        1.32         0.69         0.95         0.49         0.46         0.72 
TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 
        0.26         0.43         0.26         1.18         1.55         1.48 
TCGA-BR-8297 TCGA-CD-5801 TCGA-CD-5802 TCGA-CG-4300 TCGA-CG-4305 TCGA-CG-4306 
        0.76         0.49         0.30        20.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 
       52.96         8.05        21.99         1.02         8.98         7.07 
TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         6.94         5.98         0.95        70.06 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       28.96        31.04        65.10        21.07         7.99         8.65 
TCGA-D7-6518 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6528 TCGA-D7-6818 TCGA-D7-6822 
        9.80         6.90         0.69         1.68         4.04         4.27 
TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 
        0.62         6.54         2.01         0.39         0.20         3.02 
TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7808 
        3.58        26.43         3.55 

  DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE 
                         0.07                          0.10 
  DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE 
                        72.23                         70.06 
  DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE 
                         4.01                          1.12 
[1] "0.1 - 72.2 (4.0)" "0.1 - 70.1 (1.1)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-BR-7723                    TCGA-BR-7851 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4304                    TCGA-CG-4305 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4460                    TCGA-CG-4462 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5720                    TCGA-CG-5721 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-CG-5732                    TCGA-CG-5733 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6520                    TCGA-D7-6521 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 21(9P21.3) MUTATED"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 21(9P21.3) MUTATED" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 21(9P21.3) WILD-TYPE" "DEL PEAK 21(9P21.3) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
"DEL PEAK 21(9P21.3) WILD-TYPE"   "DEL PEAK 21(9P21.3) MUTATED" 
[1] "hr=" "2"  
D47V2, continuous
D47V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 21(9P21.3) MUTATED     22   37
  DEL PEAK 21(9P21.3) WILD-TYPE   43   59
        clus
vv       DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  FEMALE                          22                            43
  MALE                            37                            59
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 21(9P21.3) MUTATED                                       7
  DEL PEAK 21(9P21.3) WILD-TYPE                                    12
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 21(9P21.3) MUTATED                                                       25
  DEL PEAK 21(9P21.3) WILD-TYPE                                                     54
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 21(9P21.3) MUTATED                                           0
  DEL PEAK 21(9P21.3) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 21(9P21.3) MUTATED                                                   5
  DEL PEAK 21(9P21.3) WILD-TYPE                                                 4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 21(9P21.3) MUTATED                                                    2
  DEL PEAK 21(9P21.3) WILD-TYPE                                                  1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 21(9P21.3) MUTATED                                                  6
  DEL PEAK 21(9P21.3) WILD-TYPE                                                4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 21(9P21.3) MUTATED                                                                       12
  DEL PEAK 21(9P21.3) WILD-TYPE                                                                     23
D47V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 21(9P21.3) MUTATED    1 24 23  7
  DEL PEAK 21(9P21.3) WILD-TYPE  5 29 36 26
D47V5, multiclass
    clus
vv   DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  T1                           1                             5
  T2                          24                            29
  T3                          23                            36
  T4                           7                            26
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 21(9P21.3) MUTATED   17 21 13  6
  DEL PEAK 21(9P21.3) WILD-TYPE 33 36 11 13
D47V6, multiclass
    clus
vv   DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  N0                          17                            33
  N1                          21                            36
  N2                          13                            11
  N3                           6                            13
                               vv
clus                            M0 M1 MX
  DEL PEAK 21(9P21.3) MUTATED   51  5  3
  DEL PEAK 21(9P21.3) WILD-TYPE 81 13  8
D47V7, multiclass
    clus
vv   DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  M0                          51                            81
  M1                           5                            13
  MX                           3                             8
                               vv
clus                             I II III IV
  DEL PEAK 21(9P21.3) MUTATED    8 19  17 11
  DEL PEAK 21(9P21.3) WILD-TYPE 17 24  31 18
D47V8, multiclass
     clus
vv    DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  I                             8                            17
  II                           19                            24
  III                          17                            31
  IV                           11                            18
D47V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 21(9P21.3) MUTATED      3   56
  DEL PEAK 21(9P21.3) WILD-TYPE    2  100
     clus
vv    DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  NO                            3                             2
  YES                          56                           100

Clustering(48) Variable = Del Peak 22(9q21.11) mutation analysis
D48V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 22(9Q21.11) MUTATED   20  2
  DEL PEAK 22(9Q21.11) WILD-TYPE 88 14
  DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE 
                            22                            102 
  DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE 
                             2                             14 
$`DEL PEAK 22(9Q21.11) MUTATED`
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6803 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7723 
        1.35         1.35         0.66         1.05         0.82         4.54 
TCGA-BR-7901 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4304 
        0.95         0.69         0.36         0.30         0.07        27.02 
TCGA-CG-4438 TCGA-CG-4455 TCGA-CG-5724 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 
       54.05        12.03        12.03        15.65         9.63         8.19 
TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6815 TCGA-F1-6875 
        5.95         4.14         3.65        72.23 

$`DEL PEAK 22(9Q21.11) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.10         0.95         1.41         0.85         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        0.66         1.12         0.76         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 
        0.46         1.25         0.13         0.69         0.16         0.99 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.69         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 
        0.26         1.18         1.55         1.48         0.76         0.82 
TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
        0.49        20.02         3.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
        8.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       21.99         1.02         8.98        18.94         7.07        12.00 
TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 
        1.02         1.02         1.02         6.94         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 
        0.99         5.98         0.95        70.06        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 
       31.04        65.10         4.01        55.04        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6522 TCGA-D7-6524 
        8.65         3.58         4.54         9.80         6.90         0.69 
TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        6.61         1.68         4.70         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 
        0.62         7.79         6.54         2.01         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        3.02         3.58        26.43         6.87         3.55         2.53 

  DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE 
                          0.07                           0.10 
  DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE 
                         72.23                          70.06 
  DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE 
                         3.895                          1.480 
[1] "0.1 - 72.2 (3.9)" "0.1 - 70.1 (1.5)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 22(9Q21.11) MUTATED"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 22(9Q21.11) MUTATED" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 22(9Q21.11) WILD-TYPE"   "DEL PEAK 22(9Q21.11) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 22(9Q21.11) WILD-TYPE" "DEL PEAK 22(9Q21.11) WILD-TYPE" 
[1] "hr=" "4"  
D48V2, continuous
D48V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(9Q21.11) MUTATED     12   19
  DEL PEAK 22(9Q21.11) WILD-TYPE   53   77
        clus
vv       DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE
  FEMALE                           12                             53
  MALE                             19                             77
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 22(9Q21.11) MUTATED                                       6
  DEL PEAK 22(9Q21.11) WILD-TYPE                                    13
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 22(9Q21.11) MUTATED                                                       17
  DEL PEAK 22(9Q21.11) WILD-TYPE                                                     62
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 22(9Q21.11) MUTATED                                           0
  DEL PEAK 22(9Q21.11) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 22(9Q21.11) MUTATED                                                   2
  DEL PEAK 22(9Q21.11) WILD-TYPE                                                 7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 22(9Q21.11) MUTATED                                                    2
  DEL PEAK 22(9Q21.11) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 22(9Q21.11) MUTATED                                                  2
  DEL PEAK 22(9Q21.11) WILD-TYPE                                                8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 22(9Q21.11) MUTATED                                                                        2
  DEL PEAK 22(9Q21.11) WILD-TYPE                                                                     33
D48V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 22(9Q21.11) MUTATED    0 11 14  3
  DEL PEAK 22(9Q21.11) WILD-TYPE  6 42 45 30
D48V5, multiclass
    clus
vv   DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE
  T1                            0                              6
  T2                           11                             42
  T3                           14                             45
  T4                            3                             30
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 22(9Q21.11) MUTATED    9 11  6  3
  DEL PEAK 22(9Q21.11) WILD-TYPE 41 46 18 16
D48V6, multiclass
    clus
vv   DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE
  N0                            9                             41
  N1                           11                             46
  N2                            6                             18
  N3                            3                             16
                                vv
clus                              M0  M1  MX
  DEL PEAK 22(9Q21.11) MUTATED    30   1   0
  DEL PEAK 22(9Q21.11) WILD-TYPE 102  17  11
D48V7, multiclass
    clus
vv   DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE
  M0                           30                            102
  M1                            1                             17
  MX                            0                             11
                                vv
clus                              I II III IV
  DEL PEAK 22(9Q21.11) MUTATED    2 13   9  4
  DEL PEAK 22(9Q21.11) WILD-TYPE 23 30  39 25
D48V8, multiclass
     clus
vv    DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE
  I                              2                             23
  II                            13                             30
  III                            9                             39
  IV                             4                             25
D48V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 22(9Q21.11) MUTATED      2   29
  DEL PEAK 22(9Q21.11) WILD-TYPE    3  127
     clus
vv    DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE
  NO                             2                              3
  YES                           29                            127

Clustering(49) Variable = Del Peak 23(10p14) mutation analysis
D49V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 23(10P14) MUTATED   13  0
  DEL PEAK 23(10P14) WILD-TYPE 95 16
  DEL PEAK 23(10P14) MUTATED DEL PEAK 23(10P14) WILD-TYPE 
                          13                          111 
  DEL PEAK 23(10P14) MUTATED DEL PEAK 23(10P14) WILD-TYPE 
                           0                           16 
$`DEL PEAK 23(10P14) MUTATED`
TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-7901 TCGA-CD-5799 TCGA-CG-4301 TCGA-CG-4304 
        1.35         0.82         0.95         0.69         3.02        27.02 
TCGA-CG-4455 TCGA-CG-5732 TCGA-D7-6521 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6820 
       12.03        55.04         8.19         1.68         3.65         2.93 
TCGA-FP-7829 
        0.20 

$`DEL PEAK 23(10P14) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.48         0.46         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 
        0.69         0.16         4.54         0.99         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 
        1.55         1.48         0.76         0.82         0.36         0.49 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
        0.30         0.07        20.02        15.95         1.02        52.96 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 
        8.05        54.05         4.01        14.01        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       19.07        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 
       15.02        28.96        31.04        65.10         4.01        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 
        7.99         8.65         3.58         4.54         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        9.63         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 
        4.70         4.04         4.27         0.62         7.79         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 
        2.01        72.23         0.39         3.02         3.58        26.43 
TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        6.87         3.55         2.53 

  DEL PEAK 23(10P14) MUTATED DEL PEAK 23(10P14) WILD-TYPE 
                        0.20                         0.07 
  DEL PEAK 23(10P14) MUTATED DEL PEAK 23(10P14) WILD-TYPE 
                       55.04                        72.23 
  DEL PEAK 23(10P14) MUTATED DEL PEAK 23(10P14) WILD-TYPE 
                        2.93                         1.48 
[1] "0.2 - 55.0 (2.9)" "0.1 - 72.2 (1.5)"
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4449                   TCGA-CG-4455 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6527                   TCGA-D7-6528 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-FP-7916                   TCGA-FP-7998 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4449                   TCGA-CG-4455 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6527                   TCGA-D7-6528 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-FP-7916                   TCGA-FP-7998 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-BR-6565                   TCGA-BR-6566 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4437                   TCGA-CG-4438 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4440                   TCGA-CG-4441 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4449                   TCGA-CG-4455 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6520                   TCGA-D7-6521 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6527                   TCGA-D7-6528 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "DEL PEAK 23(10P14) MUTATED" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"DEL PEAK 23(10P14) WILD-TYPE"   "DEL PEAK 23(10P14) MUTATED" 
                  TCGA-FP-7916                   TCGA-FP-7998 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"DEL PEAK 23(10P14) WILD-TYPE" "DEL PEAK 23(10P14) WILD-TYPE" 
[1] "hr="     "8.1e+07"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 23(10P14) MUTATED      8   13
  DEL PEAK 23(10P14) WILD-TYPE   57   83
        clus
vv       DEL PEAK 23(10P14) MUTATED DEL PEAK 23(10P14) WILD-TYPE
  FEMALE                          8                           57
  MALE                           13                           83
                              vv
clus                           STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 23(10P14) MUTATED                                       1
  DEL PEAK 23(10P14) WILD-TYPE                                    18
                              vv
clus                           STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 23(10P14) MUTATED                                                       11
  DEL PEAK 23(10P14) WILD-TYPE                                                     68
                              vv
clus                           STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 23(10P14) MUTATED                                           0
  DEL PEAK 23(10P14) WILD-TYPE                                         1
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 23(10P14) MUTATED                                                   3
  DEL PEAK 23(10P14) WILD-TYPE                                                 6
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 23(10P14) MUTATED                                                    0
  DEL PEAK 23(10P14) WILD-TYPE                                                  3
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 23(10P14) MUTATED                                                  3
  DEL PEAK 23(10P14) WILD-TYPE                                                7
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 23(10P14) MUTATED                                                                        2
  DEL PEAK 23(10P14) WILD-TYPE                                                                     33
D49V4, multiclass
                              vv
clus                           T1 T2 T3 T4
  DEL PEAK 23(10P14) MUTATED    0 10  6  1
  DEL PEAK 23(10P14) WILD-TYPE  6 43 53 32
D49V5, multiclass
    clus
vv   DEL PEAK 23(10P14) MUTATED DEL PEAK 23(10P14) WILD-TYPE
  T1                          0                            6
  T2                         10                           43
  T3                          6                           53
  T4                          1                           32
                              vv
clus                           N0 N1 N2 N3
  DEL PEAK 23(10P14) MUTATED    3 11  2  2
  DEL PEAK 23(10P14) WILD-TYPE 47 46 22 17
D49V6, multiclass
    clus
vv   DEL PEAK 23(10P14) MUTATED DEL PEAK 23(10P14) WILD-TYPE
  N0                          3                           47
  N1                         11                           46
  N2                          2                           22
  N3                          2                           17
                              vv
clus                            M0  M1  MX
  DEL PEAK 23(10P14) MUTATED    20   1   0
  DEL PEAK 23(10P14) WILD-TYPE 112  17  11
D49V7, multiclass
    clus
vv   DEL PEAK 23(10P14) MUTATED DEL PEAK 23(10P14) WILD-TYPE
  M0                         20                          112
  M1                          1                           17
  MX                          0                           11
                              vv
clus                            I II III IV
  DEL PEAK 23(10P14) MUTATED    3  5   6  3
  DEL PEAK 23(10P14) WILD-TYPE 22 38  42 26
D49V8, multiclass
     clus
vv    DEL PEAK 23(10P14) MUTATED DEL PEAK 23(10P14) WILD-TYPE
  I                            3                           22
  II                           5                           38
  III                          6                           42
  IV                           3                           26
D49V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 23(10P14) MUTATED      1   20
  DEL PEAK 23(10P14) WILD-TYPE    4  136
     clus
vv    DEL PEAK 23(10P14) MUTATED DEL PEAK 23(10P14) WILD-TYPE
  NO                           1                            4
  YES                         20                          136

Clustering(50) Variable = Del Peak 24(10q22.3) mutation analysis
D50V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 24(10Q22.3) MUTATED   17  2
  DEL PEAK 24(10Q22.3) WILD-TYPE 91 14
  DEL PEAK 24(10Q22.3) MUTATED DEL PEAK 24(10Q22.3) WILD-TYPE 
                            19                            105 
  DEL PEAK 24(10Q22.3) MUTATED DEL PEAK 24(10Q22.3) WILD-TYPE 
                             2                             14 
$`DEL PEAK 24(10Q22.3) MUTATED`
TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-7901 TCGA-CD-5799 TCGA-CD-5802 TCGA-CG-4436 
        0.82         4.54         0.95         0.69         0.30        52.96 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-5718 TCGA-CG-5730 
        4.01        14.01        12.03        18.94         1.02         4.01 
TCGA-D7-6518 TCGA-D7-6521 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 
        9.80         8.19         4.14         1.68         3.65         4.70 
TCGA-FP-7829 
        0.20 

$`DEL PEAK 24(10Q22.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.85         0.82         0.62         0.62         1.71         2.17 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 
        0.99         1.22         0.66         1.12         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 
        0.26         1.22         1.48         0.46         1.25         0.13 
TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 
        1.05         0.69         0.16         0.99         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 
        1.55         1.48         0.76         0.82         0.36         0.49 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.07        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 
        8.05        54.05        29.98        47.05        19.07        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 
        1.02         8.98         7.07        12.00         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        1.02         6.94         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
       70.06        12.03        15.02        28.96        31.04        65.10 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 
       15.65         9.63         6.90         0.69         5.95         6.61 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 
        4.04         2.93         4.27         0.62         7.79         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 
        2.01        72.23         0.39         3.02         3.58        26.43 
TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        6.87         3.55         2.53 

  DEL PEAK 24(10Q22.3) MUTATED DEL PEAK 24(10Q22.3) WILD-TYPE 
                          0.20                           0.07 
  DEL PEAK 24(10Q22.3) MUTATED DEL PEAK 24(10Q22.3) WILD-TYPE 
                         52.96                          72.23 
  DEL PEAK 24(10Q22.3) MUTATED DEL PEAK 24(10Q22.3) WILD-TYPE 
                          4.01                           1.35 
[1] "0.2 - 53.0 (4.0)" "0.1 - 72.2 (1.4)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 24(10Q22.3) MUTATED"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 24(10Q22.3) MUTATED"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 24(10Q22.3) MUTATED"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 24(10Q22.3) MUTATED"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 24(10Q22.3) MUTATED"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 24(10Q22.3) MUTATED"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 24(10Q22.3) MUTATED"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 24(10Q22.3) MUTATED" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 24(10Q22.3) MUTATED"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 24(10Q22.3) MUTATED"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 24(10Q22.3) WILD-TYPE"   "DEL PEAK 24(10Q22.3) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 24(10Q22.3) WILD-TYPE" "DEL PEAK 24(10Q22.3) WILD-TYPE" 
[1] "hr=" "1.1"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(10Q22.3) MUTATED      8   16
  DEL PEAK 24(10Q22.3) WILD-TYPE   57   80
        clus
vv       DEL PEAK 24(10Q22.3) MUTATED DEL PEAK 24(10Q22.3) WILD-TYPE
  FEMALE                            8                             57
  MALE                             16                             80
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 24(10Q22.3) MUTATED                                       2
  DEL PEAK 24(10Q22.3) WILD-TYPE                                    17
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 24(10Q22.3) MUTATED                                                        8
  DEL PEAK 24(10Q22.3) WILD-TYPE                                                     71
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 24(10Q22.3) MUTATED                                           0
  DEL PEAK 24(10Q22.3) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 24(10Q22.3) MUTATED                                                   2
  DEL PEAK 24(10Q22.3) WILD-TYPE                                                 7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 24(10Q22.3) MUTATED                                                    1
  DEL PEAK 24(10Q22.3) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 24(10Q22.3) MUTATED                                                  3
  DEL PEAK 24(10Q22.3) WILD-TYPE                                                7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 24(10Q22.3) MUTATED                                                                        7
  DEL PEAK 24(10Q22.3) WILD-TYPE                                                                     28
D50V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 24(10Q22.3) MUTATED    0 13  6  1
  DEL PEAK 24(10Q22.3) WILD-TYPE  6 40 53 32
D50V5, multiclass
    clus
vv   DEL PEAK 24(10Q22.3) MUTATED DEL PEAK 24(10Q22.3) WILD-TYPE
  T1                            0                              6
  T2                           13                             40
  T3                            6                             53
  T4                            1                             32
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 24(10Q22.3) MUTATED    4 10  4  3
  DEL PEAK 24(10Q22.3) WILD-TYPE 46 47 20 16
D50V6, multiclass
    clus
vv   DEL PEAK 24(10Q22.3) MUTATED DEL PEAK 24(10Q22.3) WILD-TYPE
  N0                            4                             46
  N1                           10                             47
  N2                            4                             20
  N3                            3                             16
                                vv
clus                              M0  M1  MX
  DEL PEAK 24(10Q22.3) MUTATED    22   2   0
  DEL PEAK 24(10Q22.3) WILD-TYPE 110  16  11
D50V7, multiclass
    clus
vv   DEL PEAK 24(10Q22.3) MUTATED DEL PEAK 24(10Q22.3) WILD-TYPE
  M0                           22                            110
  M1                            2                             16
  MX                            0                             11
                                vv
clus                              I II III IV
  DEL PEAK 24(10Q22.3) MUTATED    3  7   6  4
  DEL PEAK 24(10Q22.3) WILD-TYPE 22 36  42 25
D50V8, multiclass
     clus
vv    DEL PEAK 24(10Q22.3) MUTATED DEL PEAK 24(10Q22.3) WILD-TYPE
  I                              3                             22
  II                             7                             36
  III                            6                             42
  IV                             4                             25
D50V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(10Q22.3) MUTATED      1   23
  DEL PEAK 24(10Q22.3) WILD-TYPE    4  133
     clus
vv    DEL PEAK 24(10Q22.3) MUTATED DEL PEAK 24(10Q22.3) WILD-TYPE
  NO                             1                              4
  YES                           23                            133

Clustering(51) Variable = Del Peak 25(10q23.31) mutation analysis
D51V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 25(10Q23.31) MUTATED   27  4
  DEL PEAK 25(10Q23.31) WILD-TYPE 81 12
  DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE 
                             31                              93 
  DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE 
                              4                              12 
$`DEL PEAK 25(10Q23.31) MUTATED`
TCGA-B7-5818 TCGA-BR-6455 TCGA-BR-7704 TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-7901 
        0.10         1.41         1.25         0.82         4.54         0.95 
TCGA-CD-5799 TCGA-CD-5802 TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4440 
        0.69         0.30        27.02        52.96         8.05         4.01 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4466 
       14.01        29.98        47.05        12.03        21.99        18.94 
TCGA-CG-5718 TCGA-CG-5725 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5577 TCGA-D7-6518 
        1.02        15.02         4.01        55.04         8.65         9.80 
TCGA-D7-6521 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-FP-7735 
        8.19         4.14         1.68         3.65         4.70         0.39 
TCGA-FP-7829 
        0.20 

$`DEL PEAK 25(10Q23.31) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.95         1.35         1.35         0.85         0.82 
TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.62         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7722 
        1.48         0.46         0.13         1.05         0.69         0.16 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.99         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-CD-5798 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 
        0.82         0.36         0.49         0.07        20.02         3.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4438 TCGA-CG-4449 TCGA-CG-4462 TCGA-CG-4465 
       15.95         1.02        54.05        19.07         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5578 
       28.96        31.04        65.10        21.07         7.99         3.58 
TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
        4.54        15.65         9.63         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 
        6.61         4.04         2.93         4.27         0.62         7.79 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 
        6.54         2.01        72.23         3.02         3.58        26.43 
TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        6.87         3.55         2.53 

  DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE 
                           0.10                            0.07 
  DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE 
                          55.04                           72.23 
  DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE 
                           4.54                            1.22 
[1] "0.1 - 55.0 (4.5)" "0.1 - 72.2 (1.2)"
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4437                      TCGA-CG-4438 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4460                      TCGA-CG-4462 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4437                      TCGA-CG-4438 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4460                      TCGA-CG-4462 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4437                      TCGA-CG-4438 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4460                      TCGA-CG-4462 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
  "DEL PEAK 25(10Q23.31) MUTATED" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 25(10Q23.31) WILD-TYPE"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
  "DEL PEAK 25(10Q23.31) MUTATED"   "DEL PEAK 25(10Q23.31) MUTATED" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 25(10Q23.31) WILD-TYPE" "DEL PEAK 25(10Q23.31) WILD-TYPE" 
[1] "hr=" "1.8"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 25(10Q23.31) MUTATED     12   25
  DEL PEAK 25(10Q23.31) WILD-TYPE   53   71
        clus
vv       DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  FEMALE                            12                              53
  MALE                              25                              71
                                 vv
clus                              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 25(10Q23.31) MUTATED                                       3
  DEL PEAK 25(10Q23.31) WILD-TYPE                                    16
                                 vv
clus                              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 25(10Q23.31) MUTATED                                                       14
  DEL PEAK 25(10Q23.31) WILD-TYPE                                                     65
                                 vv
clus                              STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 25(10Q23.31) MUTATED                                           0
  DEL PEAK 25(10Q23.31) WILD-TYPE                                         1
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 25(10Q23.31) MUTATED                                                   2
  DEL PEAK 25(10Q23.31) WILD-TYPE                                                 7
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 25(10Q23.31) MUTATED                                                    1
  DEL PEAK 25(10Q23.31) WILD-TYPE                                                  2
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 25(10Q23.31) MUTATED                                                  4
  DEL PEAK 25(10Q23.31) WILD-TYPE                                                6
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 25(10Q23.31) MUTATED                                                                       12
  DEL PEAK 25(10Q23.31) WILD-TYPE                                                                     23
D51V4, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 25(10Q23.31) MUTATED    1 21  8  2
  DEL PEAK 25(10Q23.31) WILD-TYPE  5 32 51 31
D51V5, multiclass
    clus
vv   DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  T1                             1                               5
  T2                            21                              32
  T3                             8                              51
  T4                             2                              31
                                 vv
clus                              N0 N1 N2 N3
  DEL PEAK 25(10Q23.31) MUTATED   10 14  5  5
  DEL PEAK 25(10Q23.31) WILD-TYPE 40 43 19 14
D51V6, multiclass
    clus
vv   DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  N0                            10                              40
  N1                            14                              43
  N2                             5                              19
  N3                             5                              14
                                 vv
clus                              M0 M1 MX
  DEL PEAK 25(10Q23.31) MUTATED   33  3  1
  DEL PEAK 25(10Q23.31) WILD-TYPE 99 15 10
D51V7, multiclass
    clus
vv   DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  M0                            33                              99
  M1                             3                              15
  MX                             1                              10
                                 vv
clus                               I II III IV
  DEL PEAK 25(10Q23.31) MUTATED    8  8  10  6
  DEL PEAK 25(10Q23.31) WILD-TYPE 17 35  38 23
D51V8, multiclass
     clus
vv    DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  I                               8                              17
  II                              8                              35
  III                            10                              38
  IV                              6                              23
D51V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 25(10Q23.31) MUTATED      1   36
  DEL PEAK 25(10Q23.31) WILD-TYPE    4  120
     clus
vv    DEL PEAK 25(10Q23.31) MUTATED DEL PEAK 25(10Q23.31) WILD-TYPE
  NO                              1                               4
  YES                            36                             120

Clustering(52) Variable = Del Peak 26(11p15.5) mutation analysis
D52V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 26(11P15.5) MUTATED   22  6
  DEL PEAK 26(11P15.5) WILD-TYPE 86 10
  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                            28                             96 
  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                             6                             10 
$`DEL PEAK 26(11P15.5) MUTATED`
TCGA-BR-6564 TCGA-BR-7703 TCGA-BR-7716 TCGA-BR-7723 TCGA-CD-5799 TCGA-CD-5800 
        0.82         0.46         0.82         4.54         0.69         0.36 
TCGA-CD-5802 TCGA-CG-4304 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 
        0.30        27.02        29.98        47.05        19.07        21.99 
TCGA-CG-4466 TCGA-CG-5717 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5730 TCGA-CG-5732 
       18.94         6.94        12.03        15.02         4.01        55.04 
TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6527 TCGA-D7-6528 
        3.58         4.54        15.65         9.63         4.14         1.68 
TCGA-D7-6815 TCGA-EQ-5647 TCGA-HJ-7597 TCGA-IP-7968 
        3.65         0.62        26.43         2.53 

$`DEL PEAK 26(11P15.5) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.85         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7717 
        1.22         1.48         1.25         0.13         1.05         0.69 
TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         0.99         0.95         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 
        1.48         0.76         0.82         0.49         0.07        20.02 
TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
        3.02        15.95         1.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 
        4.01        14.01        12.03         1.02         8.98         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5718 TCGA-CG-5719 
       12.00         1.02         1.02         1.02         1.02         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 
        0.99         5.98         0.95        70.06        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-6518 TCGA-D7-6521 
       65.10        21.07         7.99         8.65         9.80         8.19 
TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6817 TCGA-D7-6818 
        6.90         0.69         5.95         6.61         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        2.93         4.27         7.79         6.54         2.01        72.23 
TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-IN-7806 TCGA-IN-7808 
        0.39         0.20         3.02         3.58         6.87         3.55 

  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                          0.30                           0.07 
  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                         55.04                          72.23 
  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                         4.540                          1.235 
[1] "0.3 - 55.0 (4.5)" "0.1 - 72.2 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 26(11P15.5) MUTATED"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 26(11P15.5) WILD-TYPE" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 26(11P15.5) MUTATED" "DEL PEAK 26(11P15.5) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 26(11P15.5) WILD-TYPE"   "DEL PEAK 26(11P15.5) MUTATED" 
[1] "hr=" "1.1"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(11P15.5) MUTATED     14   23
  DEL PEAK 26(11P15.5) WILD-TYPE   51   73
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  FEMALE                           14                             51
  MALE                             23                             73
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 26(11P15.5) MUTATED                                       2
  DEL PEAK 26(11P15.5) WILD-TYPE                                    17
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 26(11P15.5) MUTATED                                                       16
  DEL PEAK 26(11P15.5) WILD-TYPE                                                     63
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 26(11P15.5) MUTATED                                           1
  DEL PEAK 26(11P15.5) WILD-TYPE                                         0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 26(11P15.5) MUTATED                                                   3
  DEL PEAK 26(11P15.5) WILD-TYPE                                                 6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 26(11P15.5) MUTATED                                                    3
  DEL PEAK 26(11P15.5) WILD-TYPE                                                  0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 26(11P15.5) MUTATED                                                  5
  DEL PEAK 26(11P15.5) WILD-TYPE                                                5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 26(11P15.5) MUTATED                                                                        6
  DEL PEAK 26(11P15.5) WILD-TYPE                                                                     29
D52V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 26(11P15.5) MUTATED    2 18 11  3
  DEL PEAK 26(11P15.5) WILD-TYPE  4 35 48 30
D52V5, multiclass
    clus
vv   DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  T1                            2                              4
  T2                           18                             35
  T3                           11                             48
  T4                            3                             30
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 26(11P15.5) MUTATED    9 15  7  4
  DEL PEAK 26(11P15.5) WILD-TYPE 41 42 17 15
D52V6, multiclass
    clus
vv   DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  N0                            9                             41
  N1                           15                             42
  N2                            7                             17
  N3                            4                             15
                                vv
clus                              M0  M1  MX
  DEL PEAK 26(11P15.5) MUTATED    30   4   3
  DEL PEAK 26(11P15.5) WILD-TYPE 102  14   8
D52V7, multiclass
    clus
vv   DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  M0                           30                            102
  M1                            4                             14
  MX                            3                              8
                                vv
clus                              I II III IV
  DEL PEAK 26(11P15.5) MUTATED    7 10   9  7
  DEL PEAK 26(11P15.5) WILD-TYPE 18 33  39 22
D52V8, multiclass
     clus
vv    DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  I                              7                             18
  II                            10                             33
  III                            9                             39
  IV                             7                             22
D52V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(11P15.5) MUTATED      2   35
  DEL PEAK 26(11P15.5) WILD-TYPE    3  121
     clus
vv    DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  NO                             2                              3
  YES                           35                            121

Clustering(53) Variable = Del Peak 27(11q23.2) mutation analysis
D53V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 27(11Q23.2) MUTATED   20  5
  DEL PEAK 27(11Q23.2) WILD-TYPE 88 11
  DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE 
                            25                             99 
  DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE 
                             5                             11 
$`DEL PEAK 27(11Q23.2) MUTATED`
TCGA-BR-6564 TCGA-BR-6709 TCGA-BR-7722 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 
        0.82         1.22         0.16         0.69         0.36         0.30 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4437 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4455 
        3.02        27.02         8.05        14.01        29.98        12.03 
TCGA-CG-4474 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5725 TCGA-D7-5578 
        1.02         1.02         1.02        12.03        15.02         3.58 
TCGA-D7-5579 TCGA-D7-6527 TCGA-D7-6815 TCGA-EQ-5647 TCGA-FP-7916 TCGA-HJ-7597 
        4.54         4.14         3.65         0.62         3.02        26.43 
TCGA-IP-7968 
        2.53 

$`DEL PEAK 27(11Q23.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.85         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 
        1.48         0.46         1.25         0.13         1.05         0.82 
TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 
        0.69         4.54         0.99         0.95         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5803 
        1.55         1.48         0.76         0.82         0.49         0.07 
TCGA-CG-4300 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 
       20.02        15.95         1.02        52.96        54.05         4.01 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 
       47.05        19.07        21.99         1.02         8.98        18.94 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5720 
        7.07        12.00         1.02         1.02         6.94         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
        5.98         0.95        70.06        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-6518 
        4.01        55.04        21.07         7.99         8.65         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        6.61         1.68         4.70         4.04         2.93         4.27 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
        7.79         6.54         2.01        72.23         0.39         0.20 
TCGA-FP-7998 TCGA-IN-7806 TCGA-IN-7808 
        3.58         6.87         3.55 

  DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE 
                          0.16                           0.07 
  DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE 
                         29.98                          72.23 
  DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE 
                          3.02                           1.41 
[1] "0.2 - 30.0 (3.0)" "0.1 - 72.2 (1.4)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 27(11Q23.2) MUTATED"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 27(11Q23.2) MUTATED"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 27(11Q23.2) MUTATED"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 27(11Q23.2) MUTATED"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 27(11Q23.2) MUTATED"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 27(11Q23.2) MUTATED"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 27(11Q23.2) MUTATED"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 27(11Q23.2) MUTATED"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 27(11Q23.2) MUTATED"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 27(11Q23.2) WILD-TYPE" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 27(11Q23.2) MUTATED" "DEL PEAK 27(11Q23.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 27(11Q23.2) WILD-TYPE"   "DEL PEAK 27(11Q23.2) MUTATED" 
[1] "hr=" "1.7"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(11Q23.2) MUTATED     11   23
  DEL PEAK 27(11Q23.2) WILD-TYPE   54   73
        clus
vv       DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE
  FEMALE                           11                             54
  MALE                             23                             73
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 27(11Q23.2) MUTATED                                       3
  DEL PEAK 27(11Q23.2) WILD-TYPE                                    16
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 27(11Q23.2) MUTATED                                                       15
  DEL PEAK 27(11Q23.2) WILD-TYPE                                                     64
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 27(11Q23.2) MUTATED                                           1
  DEL PEAK 27(11Q23.2) WILD-TYPE                                         0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 27(11Q23.2) MUTATED                                                   3
  DEL PEAK 27(11Q23.2) WILD-TYPE                                                 6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 27(11Q23.2) MUTATED                                                    2
  DEL PEAK 27(11Q23.2) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 27(11Q23.2) MUTATED                                                  3
  DEL PEAK 27(11Q23.2) WILD-TYPE                                                7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 27(11Q23.2) MUTATED                                                                        7
  DEL PEAK 27(11Q23.2) WILD-TYPE                                                                     28
D53V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 27(11Q23.2) MUTATED    2 14 12  5
  DEL PEAK 27(11Q23.2) WILD-TYPE  4 39 47 28
D53V5, multiclass
    clus
vv   DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE
  T1                            2                              4
  T2                           14                             39
  T3                           12                             47
  T4                            5                             28
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 27(11Q23.2) MUTATED   10 12  7  4
  DEL PEAK 27(11Q23.2) WILD-TYPE 40 45 17 15
D53V6, multiclass
    clus
vv   DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE
  N0                           10                             40
  N1                           12                             45
  N2                            7                             17
  N3                            4                             15
                                vv
clus                              M0  M1  MX
  DEL PEAK 27(11Q23.2) MUTATED    25   5   4
  DEL PEAK 27(11Q23.2) WILD-TYPE 107  13   7
D53V7, multiclass
    clus
vv   DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE
  M0                           25                            107
  M1                            5                             13
  MX                            4                              7
                                vv
clus                              I II III IV
  DEL PEAK 27(11Q23.2) MUTATED    6 11   9  6
  DEL PEAK 27(11Q23.2) WILD-TYPE 19 32  39 23
D53V8, multiclass
     clus
vv    DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE
  I                              6                             19
  II                            11                             32
  III                            9                             39
  IV                             6                             23
D53V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(11Q23.2) MUTATED      2   32
  DEL PEAK 27(11Q23.2) WILD-TYPE    3  124
     clus
vv    DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE
  NO                             2                              3
  YES                           32                            124

Clustering(54) Variable = Del Peak 28(12p13.2) mutation analysis
D54V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 28(12P13.2) MUTATED   14  3
  DEL PEAK 28(12P13.2) WILD-TYPE 94 13
  DEL PEAK 28(12P13.2) MUTATED DEL PEAK 28(12P13.2) WILD-TYPE 
                            17                            107 
  DEL PEAK 28(12P13.2) MUTATED DEL PEAK 28(12P13.2) WILD-TYPE 
                             3                             13 
$`DEL PEAK 28(12P13.2) MUTATED`
TCGA-BR-6458 TCGA-BR-6709 TCGA-BR-7715 TCGA-BR-7901 TCGA-CD-5800 TCGA-CG-4301 
        1.35         1.22         1.05         0.95         0.36         3.02 
TCGA-CG-4436 TCGA-CG-5725 TCGA-CG-5732 TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6528 
       52.96        15.02        55.04         4.54        15.65         1.68 
TCGA-D7-6817 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6875 TCGA-IP-7968 
        4.70         4.27         0.62        72.23         2.53 

$`DEL PEAK 28(12P13.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7717 
        1.48         0.46         1.25         0.13         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         4.54         0.99         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5802 
        1.48         0.76         0.82         0.69         0.49         0.30 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 
        0.07        20.02        27.02        15.95         1.02         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 
       54.05         4.01        14.01        29.98        47.05        19.07 
TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       12.03        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 
       28.96        31.04        65.10         4.01        21.07         7.99 
TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        8.65         3.58         9.80         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6818 
        0.69         5.95         6.61         4.14         3.65         4.04 
TCGA-D7-6820 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 
        2.93         7.79         6.54         2.01         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
        3.02         3.58        26.43         6.87         3.55 

  DEL PEAK 28(12P13.2) MUTATED DEL PEAK 28(12P13.2) WILD-TYPE 
                          0.36                           0.07 
  DEL PEAK 28(12P13.2) MUTATED DEL PEAK 28(12P13.2) WILD-TYPE 
                         72.23                          70.06 
  DEL PEAK 28(12P13.2) MUTATED DEL PEAK 28(12P13.2) WILD-TYPE 
                          3.02                           1.41 
[1] "0.4 - 72.2 (3.0)" "0.1 - 70.1 (1.4)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 28(12P13.2) MUTATED"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 28(12P13.2) MUTATED"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 28(12P13.2) MUTATED" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 28(12P13.2) MUTATED"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 28(12P13.2) WILD-TYPE" "DEL PEAK 28(12P13.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 28(12P13.2) WILD-TYPE"   "DEL PEAK 28(12P13.2) MUTATED" 
[1] "hr=" "1.6"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(12P13.2) MUTATED     11   13
  DEL PEAK 28(12P13.2) WILD-TYPE   54   83
        clus
vv       DEL PEAK 28(12P13.2) MUTATED DEL PEAK 28(12P13.2) WILD-TYPE
  FEMALE                           11                             54
  MALE                             13                             83
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 28(12P13.2) MUTATED                                       1
  DEL PEAK 28(12P13.2) WILD-TYPE                                    18
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 28(12P13.2) MUTATED                                                       16
  DEL PEAK 28(12P13.2) WILD-TYPE                                                     63
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 28(12P13.2) MUTATED                                           0
  DEL PEAK 28(12P13.2) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 28(12P13.2) MUTATED                                                   1
  DEL PEAK 28(12P13.2) WILD-TYPE                                                 8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 28(12P13.2) MUTATED                                                    1
  DEL PEAK 28(12P13.2) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 28(12P13.2) MUTATED                                                  3
  DEL PEAK 28(12P13.2) WILD-TYPE                                                7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 28(12P13.2) MUTATED                                                                        2
  DEL PEAK 28(12P13.2) WILD-TYPE                                                                     33
D54V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 28(12P13.2) MUTATED    0 10 10  2
  DEL PEAK 28(12P13.2) WILD-TYPE  6 43 49 31
D54V5, multiclass
    clus
vv   DEL PEAK 28(12P13.2) MUTATED DEL PEAK 28(12P13.2) WILD-TYPE
  T1                            0                              6
  T2                           10                             43
  T3                           10                             49
  T4                            2                             31
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 28(12P13.2) MUTATED    9  7  3  3
  DEL PEAK 28(12P13.2) WILD-TYPE 41 50 21 16
D54V6, multiclass
    clus
vv   DEL PEAK 28(12P13.2) MUTATED DEL PEAK 28(12P13.2) WILD-TYPE
  N0                            9                             41
  N1                            7                             50
  N2                            3                             21
  N3                            3                             16
                                vv
clus                              M0  M1  MX
  DEL PEAK 28(12P13.2) MUTATED    20   2   2
  DEL PEAK 28(12P13.2) WILD-TYPE 112  16   9
D54V7, multiclass
    clus
vv   DEL PEAK 28(12P13.2) MUTATED DEL PEAK 28(12P13.2) WILD-TYPE
  M0                           20                            112
  M1                            2                             16
  MX                            2                              9
                                vv
clus                              I II III IV
  DEL PEAK 28(12P13.2) MUTATED    7  4   8  3
  DEL PEAK 28(12P13.2) WILD-TYPE 18 39  40 26
D54V8, multiclass
     clus
vv    DEL PEAK 28(12P13.2) MUTATED DEL PEAK 28(12P13.2) WILD-TYPE
  I                              7                             18
  II                             4                             39
  III                            8                             40
  IV                             3                             26
D54V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(12P13.2) MUTATED      1   23
  DEL PEAK 28(12P13.2) WILD-TYPE    4  133
     clus
vv    DEL PEAK 28(12P13.2) MUTATED DEL PEAK 28(12P13.2) WILD-TYPE
  NO                             1                              4
  YES                           23                            133

Clustering(55) Variable = Del Peak 29(14q21.1) mutation analysis
D55V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 29(14Q21.1) MUTATED   25  4
  DEL PEAK 29(14Q21.1) WILD-TYPE 83 12
  DEL PEAK 29(14Q21.1) MUTATED DEL PEAK 29(14Q21.1) WILD-TYPE 
                            29                             95 
  DEL PEAK 29(14Q21.1) MUTATED DEL PEAK 29(14Q21.1) WILD-TYPE 
                             4                             12 
$`DEL PEAK 29(14Q21.1) MUTATED`
TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-6803 TCGA-BR-7715 
        1.35         0.82         0.62         1.22         0.66         1.05 
TCGA-BR-7716 TCGA-BR-7723 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 
        0.82         4.54         0.36         0.49         0.07        20.02 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4477 TCGA-CG-5724 TCGA-CG-5725 
        8.05        54.05         4.01         1.02        12.03        15.02 
TCGA-D7-5579 TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 
        4.54        15.65         8.19         6.61         4.14         3.65 
TCGA-EQ-8122 TCGA-FP-7916 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
        7.79         3.02        26.43         6.87         2.53 

$`DEL PEAK 29(14Q21.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 
        0.62         1.71         2.17         0.99         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 
        0.76         0.26         1.22         1.48         0.46         1.25 
TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
        0.13         0.69         0.16         0.99         0.95         0.69 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.16         1.08         0.82         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.49         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 
        1.18         1.55         1.48         0.76         0.82         0.69 
TCGA-CD-5802 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
        0.30         3.02        27.02        15.95         1.02        52.96 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
        1.02         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         6.94         1.02         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
        0.95        70.06        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 
       55.04        21.07         7.99         8.65         3.58         9.80 
TCGA-D7-6520 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6528 TCGA-D7-6817 
        9.63         6.90         0.69         5.95         1.68         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 
        4.04         2.93         4.27         0.62         6.54         2.01 
TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7998 TCGA-IN-7808 
       72.23         0.39         0.20         3.58         3.55 

  DEL PEAK 29(14Q21.1) MUTATED DEL PEAK 29(14Q21.1) WILD-TYPE 
                          0.07                           0.10 
  DEL PEAK 29(14Q21.1) MUTATED DEL PEAK 29(14Q21.1) WILD-TYPE 
                         54.05                          72.23 
  DEL PEAK 29(14Q21.1) MUTATED DEL PEAK 29(14Q21.1) WILD-TYPE 
                          4.01                           1.35 
[1] "0.1 - 54.0 (4.0)" "0.1 - 72.2 (1.4)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 29(14Q21.1) WILD-TYPE" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 29(14Q21.1) MUTATED" "DEL PEAK 29(14Q21.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 29(14Q21.1) MUTATED"   "DEL PEAK 29(14Q21.1) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 29(14Q21.1) WILD-TYPE"   "DEL PEAK 29(14Q21.1) MUTATED" 
[1] "hr=" "1.2"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(14Q21.1) MUTATED     18   18
  DEL PEAK 29(14Q21.1) WILD-TYPE   47   78
        clus
vv       DEL PEAK 29(14Q21.1) MUTATED DEL PEAK 29(14Q21.1) WILD-TYPE
  FEMALE                           18                             47
  MALE                             18                             78
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 29(14Q21.1) MUTATED                                       6
  DEL PEAK 29(14Q21.1) WILD-TYPE                                    13
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 29(14Q21.1) MUTATED                                                       19
  DEL PEAK 29(14Q21.1) WILD-TYPE                                                     60
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 29(14Q21.1) MUTATED                                           1
  DEL PEAK 29(14Q21.1) WILD-TYPE                                         0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 29(14Q21.1) MUTATED                                                   1
  DEL PEAK 29(14Q21.1) WILD-TYPE                                                 8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 29(14Q21.1) MUTATED                                                    2
  DEL PEAK 29(14Q21.1) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 29(14Q21.1) MUTATED                                                  2
  DEL PEAK 29(14Q21.1) WILD-TYPE                                                8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 29(14Q21.1) MUTATED                                                                        5
  DEL PEAK 29(14Q21.1) WILD-TYPE                                                                     30
D55V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 29(14Q21.1) MUTATED    0 10 20  3
  DEL PEAK 29(14Q21.1) WILD-TYPE  6 43 39 30
D55V5, multiclass
    clus
vv   DEL PEAK 29(14Q21.1) MUTATED DEL PEAK 29(14Q21.1) WILD-TYPE
  T1                            0                              6
  T2                           10                             43
  T3                           20                             39
  T4                            3                             30
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 29(14Q21.1) MUTATED    9 12  9  3
  DEL PEAK 29(14Q21.1) WILD-TYPE 41 45 15 16
D55V6, multiclass
    clus
vv   DEL PEAK 29(14Q21.1) MUTATED DEL PEAK 29(14Q21.1) WILD-TYPE
  N0                            9                             41
  N1                           12                             45
  N2                            9                             15
  N3                            3                             16
                                vv
clus                              M0  M1  MX
  DEL PEAK 29(14Q21.1) MUTATED    29   2   5
  DEL PEAK 29(14Q21.1) WILD-TYPE 103  16   6
D55V7, multiclass
    clus
vv   DEL PEAK 29(14Q21.1) MUTATED DEL PEAK 29(14Q21.1) WILD-TYPE
  M0                           29                            103
  M1                            2                             16
  MX                            5                              6
                                vv
clus                              I II III IV
  DEL PEAK 29(14Q21.1) MUTATED    4 12  13  4
  DEL PEAK 29(14Q21.1) WILD-TYPE 21 31  35 25
D55V8, multiclass
     clus
vv    DEL PEAK 29(14Q21.1) MUTATED DEL PEAK 29(14Q21.1) WILD-TYPE
  I                              4                             21
  II                            12                             31
  III                           13                             35
  IV                             4                             25
D55V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(14Q21.1) MUTATED      2   34
  DEL PEAK 29(14Q21.1) WILD-TYPE    3  122
     clus
vv    DEL PEAK 29(14Q21.1) MUTATED DEL PEAK 29(14Q21.1) WILD-TYPE
  NO                             2                              3
  YES                           34                            122

Clustering(56) Variable = Del Peak 30(14q32.33) mutation analysis
D56V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 30(14Q32.33) MUTATED   28  2
  DEL PEAK 30(14Q32.33) WILD-TYPE 80 14
  DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE 
                             30                              94 
  DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE 
                              2                              14 
$`DEL PEAK 30(14Q32.33) MUTATED`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-6803 
        0.10         1.35         0.82         0.62         1.22         0.66 
TCGA-BR-7715 TCGA-BR-7716 TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4436 
        1.05         0.82         0.49         0.07        20.02        52.96 
TCGA-CG-4438 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4477 TCGA-CG-5733 
       54.05        29.98        47.05        19.07         1.02        21.07 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6815 
       15.65         9.63         8.19         5.95         4.14         3.65 
TCGA-D7-6822 TCGA-EQ-8122 TCGA-FP-7916 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IP-7968 
        4.27         7.79         3.02        26.43         6.87         2.53 

$`DEL PEAK 30(14Q32.33) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6566 
        5.62         0.95         1.41         1.35         0.85         0.62 
TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 
        1.71         2.17         0.99         0.66         1.12         0.76 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 
        0.26         1.22         1.48         0.46         1.25         0.13 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
        0.69         0.16         4.54         0.99         0.95         0.69 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.16         1.08         0.82         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.49         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 
        1.18         1.55         1.48         0.76         0.82         0.69 
TCGA-CD-5800 TCGA-CD-5802 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.36         0.30         3.02        27.02        15.95         1.02 
TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 
        8.05         4.01        14.01        12.03        21.99         1.02 
TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 
        8.98        18.94         7.07        12.00         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
       70.06        12.03        15.02        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
        4.01        55.04         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6817 
        9.80         6.90         0.69         6.61         1.68         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 
        4.04         2.93         0.62         6.54         2.01        72.23 
TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7998 TCGA-IN-7808 
        0.39         0.20         3.58         3.55 

  DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE 
                           0.07                            0.13 
  DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE 
                          54.05                           72.23 
  DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE 
                          4.205                           1.335 
[1] "0.1 - 54.0 (4.2)" "0.1 - 72.2 (1.3)"
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4440                      TCGA-CG-4441 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6815                      TCGA-D7-6817 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-FP-7916                      TCGA-FP-7998 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4440                      TCGA-CG-4441 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6815                      TCGA-D7-6817 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-FP-7916                      TCGA-FP-7998 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CD-5800                      TCGA-CD-5801 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4440                      TCGA-CG-4441 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6815                      TCGA-D7-6817 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
"DEL PEAK 30(14Q32.33) WILD-TYPE" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-FP-7916                      TCGA-FP-7998 
  "DEL PEAK 30(14Q32.33) MUTATED" "DEL PEAK 30(14Q32.33) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
  "DEL PEAK 30(14Q32.33) MUTATED"   "DEL PEAK 30(14Q32.33) MUTATED" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 30(14Q32.33) WILD-TYPE"   "DEL PEAK 30(14Q32.33) MUTATED" 
[1] "hr=" "3.8"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 30(14Q32.33) MUTATED     17   23
  DEL PEAK 30(14Q32.33) WILD-TYPE   48   73
        clus
vv       DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  FEMALE                            17                              48
  MALE                              23                              73
                                 vv
clus                              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 30(14Q32.33) MUTATED                                       7
  DEL PEAK 30(14Q32.33) WILD-TYPE                                    12
                                 vv
clus                              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 30(14Q32.33) MUTATED                                                       19
  DEL PEAK 30(14Q32.33) WILD-TYPE                                                     60
                                 vv
clus                              STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 30(14Q32.33) MUTATED                                           1
  DEL PEAK 30(14Q32.33) WILD-TYPE                                         0
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 30(14Q32.33) MUTATED                                                   2
  DEL PEAK 30(14Q32.33) WILD-TYPE                                                 7
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 30(14Q32.33) MUTATED                                                    1
  DEL PEAK 30(14Q32.33) WILD-TYPE                                                  2
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 30(14Q32.33) MUTATED                                                  3
  DEL PEAK 30(14Q32.33) WILD-TYPE                                                7
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 30(14Q32.33) MUTATED                                                                        6
  DEL PEAK 30(14Q32.33) WILD-TYPE                                                                     29
D56V4, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 30(14Q32.33) MUTATED    1 17 16  3
  DEL PEAK 30(14Q32.33) WILD-TYPE  5 36 43 30
D56V5, multiclass
    clus
vv   DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  T1                             1                               5
  T2                            17                              36
  T3                            16                              43
  T4                             3                              30
                                 vv
clus                              N0 N1 N2 N3
  DEL PEAK 30(14Q32.33) MUTATED   12 14 10  2
  DEL PEAK 30(14Q32.33) WILD-TYPE 38 43 14 17
D56V6, multiclass
    clus
vv   DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  N0                            12                              38
  N1                            14                              43
  N2                            10                              14
  N3                             2                              17
                                 vv
clus                              M0 M1 MX
  DEL PEAK 30(14Q32.33) MUTATED   35  0  5
  DEL PEAK 30(14Q32.33) WILD-TYPE 97 18  6
D56V7, multiclass
    clus
vv   DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  M0                            35                              97
  M1                             0                              18
  MX                             5                               6
                                 vv
clus                               I II III IV
  DEL PEAK 30(14Q32.33) MUTATED    7 10  17  3
  DEL PEAK 30(14Q32.33) WILD-TYPE 18 33  31 26
D56V8, multiclass
     clus
vv    DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  I                               7                              18
  II                             10                              33
  III                            17                              31
  IV                              3                              26
D56V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 30(14Q32.33) MUTATED      3   37
  DEL PEAK 30(14Q32.33) WILD-TYPE    2  119
     clus
vv    DEL PEAK 30(14Q32.33) MUTATED DEL PEAK 30(14Q32.33) WILD-TYPE
  NO                              3                               2
  YES                            37                             119

Clustering(57) Variable = Del Peak 31(15q11.2) mutation analysis
D57V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 31(15Q11.2) MUTATED   25  5
  DEL PEAK 31(15Q11.2) WILD-TYPE 83 11
  DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE 
                            30                             94 
  DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE 
                             5                             11 
$`DEL PEAK 31(15Q11.2) MUTATED`
TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7901 
        1.35         1.35         0.62         0.46         1.25         0.95 
TCGA-CD-5801 TCGA-CG-4300 TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4444 
        0.49        20.02        52.96        54.05         4.01        47.05 
TCGA-CG-4466 TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5732 TCGA-D7-5578 
       18.94         1.02        12.03        15.02        55.04         3.58 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        9.80        15.65         9.63         5.95         6.61         4.14 
TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-F1-6875 TCGA-HJ-7597 TCGA-IP-7968 
        1.68         3.65         4.70        72.23        26.43         2.53 

$`DEL PEAK 31(15Q11.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.10         0.95         1.41         0.85         0.82 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 
        0.13         1.05         0.82         0.69         0.16         4.54 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.99         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 
        0.82         0.69         0.36         0.30         0.07         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4441 TCGA-CG-4443 
       27.02        15.95         1.02         8.05        14.01        29.98 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 
       19.07        12.03        21.99         1.02         8.98         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 
        0.99         5.98         0.95        70.06        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 
       65.10         4.01        21.07         7.99         8.65         4.54 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6818 TCGA-D7-6820 TCGA-D7-6822 
        8.19         6.90         0.69         4.04         2.93         4.27 
TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 
        0.62         7.79         6.54         2.01         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-IN-7806 TCGA-IN-7808 
        3.02         3.58         6.87         3.55 

  DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE 
                          0.46                           0.07 
  DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE 
                         72.23                          70.06 
  DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE 
                         5.325                          1.150 
[1] "0.5 - 72.2 (5.3)" "0.1 - 70.1 (1.1)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 31(15Q11.2) MUTATED"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 31(15Q11.2) WILD-TYPE" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 31(15Q11.2) MUTATED" "DEL PEAK 31(15Q11.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 31(15Q11.2) WILD-TYPE"   "DEL PEAK 31(15Q11.2) MUTATED" 
[1] "hr=" "2"  
D57V2, continuous
D57V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(15Q11.2) MUTATED     13   26
  DEL PEAK 31(15Q11.2) WILD-TYPE   52   70
        clus
vv       DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  FEMALE                           13                             52
  MALE                             26                             70
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 31(15Q11.2) MUTATED                                       4
  DEL PEAK 31(15Q11.2) WILD-TYPE                                    15
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 31(15Q11.2) MUTATED                                                       16
  DEL PEAK 31(15Q11.2) WILD-TYPE                                                     63
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 31(15Q11.2) MUTATED                                           1
  DEL PEAK 31(15Q11.2) WILD-TYPE                                         0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 31(15Q11.2) MUTATED                                                   1
  DEL PEAK 31(15Q11.2) WILD-TYPE                                                 8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 31(15Q11.2) MUTATED                                                    2
  DEL PEAK 31(15Q11.2) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 31(15Q11.2) MUTATED                                                  7
  DEL PEAK 31(15Q11.2) WILD-TYPE                                                3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 31(15Q11.2) MUTATED                                                                        7
  DEL PEAK 31(15Q11.2) WILD-TYPE                                                                     28
D57V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 31(15Q11.2) MUTATED    1 18 15  2
  DEL PEAK 31(15Q11.2) WILD-TYPE  5 35 44 31
D57V5, multiclass
    clus
vv   DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  T1                            1                              5
  T2                           18                             35
  T3                           15                             44
  T4                            2                             31
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 31(15Q11.2) MUTATED   13  7  9  6
  DEL PEAK 31(15Q11.2) WILD-TYPE 37 50 15 13
D57V6, multiclass
    clus
vv   DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  N0                           13                             37
  N1                            7                             50
  N2                            9                             15
  N3                            6                             13
                                vv
clus                             M0 M1 MX
  DEL PEAK 31(15Q11.2) MUTATED   33  3  3
  DEL PEAK 31(15Q11.2) WILD-TYPE 99 15  8
D57V7, multiclass
    clus
vv   DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  M0                           33                             99
  M1                            3                             15
  MX                            3                              8
                                vv
clus                              I II III IV
  DEL PEAK 31(15Q11.2) MUTATED    8  7  13  7
  DEL PEAK 31(15Q11.2) WILD-TYPE 17 36  35 22
D57V8, multiclass
     clus
vv    DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  I                              8                             17
  II                             7                             36
  III                           13                             35
  IV                             7                             22
D57V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 31(15Q11.2) MUTATED      3   36
  DEL PEAK 31(15Q11.2) WILD-TYPE    2  120
     clus
vv    DEL PEAK 31(15Q11.2) MUTATED DEL PEAK 31(15Q11.2) WILD-TYPE
  NO                             3                              2
  YES                           36                            120

Clustering(58) Variable = Del Peak 32(15q15.1) mutation analysis
D58V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 32(15Q15.1) MUTATED   25  5
  DEL PEAK 32(15Q15.1) WILD-TYPE 83 11
  DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE 
                            30                             94 
  DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE 
                             5                             11 
$`DEL PEAK 32(15Q15.1) MUTATED`
TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-7704 TCGA-BR-7901 TCGA-CD-5801 TCGA-CG-4300 
        0.62         1.22         1.25         0.95         0.49        20.02 
TCGA-CG-4436 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4444 TCGA-CG-4466 
       52.96        54.05         4.01        14.01        47.05        18.94 
TCGA-CG-4477 TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-6518 
        1.02         1.02        12.03        55.04         3.58         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
       15.65         9.63         5.95         6.61         4.14         1.68 
TCGA-D7-6817 TCGA-D7-6822 TCGA-F1-6875 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IP-7968 
        4.70         4.27        72.23         3.58        26.43         2.53 

$`DEL PEAK 32(15Q15.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.85         0.82         0.62         1.71         2.17         0.99 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        1.48         0.46         0.13         1.05         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         4.54         0.99         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 
        1.48         0.76         0.82         0.69         0.36         0.30 
TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 
        0.07         3.02        27.02        15.95         1.02         8.05 
TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
       29.98        19.07        12.03        21.99         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
        7.07        12.00         1.02         1.02         6.94         1.02 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 
        0.99         5.98         0.95        70.06        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       31.04        65.10         4.01        21.07         7.99         8.65 
TCGA-D7-5579 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6815 TCGA-D7-6818 
        4.54         8.19         6.90         0.69         3.65         4.04 
TCGA-D7-6820 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 
        2.93         0.62         7.79         6.54         2.01         0.39 
TCGA-FP-7829 TCGA-FP-7916 TCGA-IN-7806 TCGA-IN-7808 
        0.20         3.02         6.87         3.55 

  DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE 
                          0.49                           0.07 
  DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE 
                         72.23                          70.06 
  DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE 
                         5.325                          1.150 
[1] "0.5 - 72.2 (5.3)" "0.1 - 70.1 (1.1)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 32(15Q15.1) MUTATED"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 32(15Q15.1) WILD-TYPE" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 32(15Q15.1) MUTATED" "DEL PEAK 32(15Q15.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 32(15Q15.1) WILD-TYPE"   "DEL PEAK 32(15Q15.1) MUTATED" 
[1] "hr=" "2"  
D58V2, continuous
D58V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(15Q15.1) MUTATED     13   27
  DEL PEAK 32(15Q15.1) WILD-TYPE   52   69
        clus
vv       DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  FEMALE                           13                             52
  MALE                             27                             69
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 32(15Q15.1) MUTATED                                       5
  DEL PEAK 32(15Q15.1) WILD-TYPE                                    14
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 32(15Q15.1) MUTATED                                                       15
  DEL PEAK 32(15Q15.1) WILD-TYPE                                                     64
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 32(15Q15.1) MUTATED                                           1
  DEL PEAK 32(15Q15.1) WILD-TYPE                                         0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 32(15Q15.1) MUTATED                                                   1
  DEL PEAK 32(15Q15.1) WILD-TYPE                                                 8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 32(15Q15.1) MUTATED                                                    1
  DEL PEAK 32(15Q15.1) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 32(15Q15.1) MUTATED                                                  7
  DEL PEAK 32(15Q15.1) WILD-TYPE                                                3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 32(15Q15.1) MUTATED                                                                        9
  DEL PEAK 32(15Q15.1) WILD-TYPE                                                                     26
D58V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 32(15Q15.1) MUTATED    0 20 14  3
  DEL PEAK 32(15Q15.1) WILD-TYPE  6 33 45 30
D58V5, multiclass
    clus
vv   DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  T1                            0                              6
  T2                           20                             33
  T3                           14                             45
  T4                            3                             30
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 32(15Q15.1) MUTATED   13  5 10  7
  DEL PEAK 32(15Q15.1) WILD-TYPE 37 52 14 12
D58V6, multiclass
    clus
vv   DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  N0                           13                             37
  N1                            5                             52
  N2                           10                             14
  N3                            7                             12
                                vv
clus                              M0  M1  MX
  DEL PEAK 32(15Q15.1) MUTATED    32   3   5
  DEL PEAK 32(15Q15.1) WILD-TYPE 100  15   6
D58V7, multiclass
    clus
vv   DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  M0                           32                            100
  M1                            3                             15
  MX                            5                              6
                                vv
clus                              I II III IV
  DEL PEAK 32(15Q15.1) MUTATED    9  5  14  7
  DEL PEAK 32(15Q15.1) WILD-TYPE 16 38  34 22
D58V8, multiclass
     clus
vv    DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  I                              9                             16
  II                             5                             38
  III                           14                             34
  IV                             7                             22
D58V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(15Q15.1) MUTATED      3   37
  DEL PEAK 32(15Q15.1) WILD-TYPE    2  119
     clus
vv    DEL PEAK 32(15Q15.1) MUTATED DEL PEAK 32(15Q15.1) WILD-TYPE
  NO                             3                              2
  YES                           37                            119

Clustering(59) Variable = Del Peak 33(16p13.3) mutation analysis
D59V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 33(16P13.3) MUTATED   10  2
  DEL PEAK 33(16P13.3) WILD-TYPE 98 14
  DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE 
                            12                            112 
  DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE 
                             2                             14 
$`DEL PEAK 33(16P13.3) MUTATED`
TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7901 TCGA-CD-5803 TCGA-CG-4449 
        1.48         1.05         0.82         0.95         0.07        19.07 
TCGA-CG-4455 TCGA-CG-5724 TCGA-D7-5579 TCGA-D7-6528 TCGA-D7-6822 TCGA-F1-6875 
       12.03        12.03         4.54         1.68         4.27        72.23 

$`DEL PEAK 33(16P13.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.85         0.82         0.62         0.62         1.71         2.17 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 
        0.99         1.22         0.66         1.12         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7717 
        0.26         1.22         0.46         1.25         0.13         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         4.54         0.99         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 
        1.48         0.76         0.82         0.69         0.36         0.49 
TCGA-CD-5802 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.30        20.02         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
       52.96         8.05        54.05         4.01        14.01        29.98 
TCGA-CG-4444 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 
       47.05        21.99         1.02         8.98        18.94         7.07 
TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       12.00         1.02         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 
        1.02         0.99         5.98         0.95        70.06        15.02 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 
        7.99         8.65         3.58         9.80        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-EQ-8122 
        3.65         4.70         4.04         2.93         0.62         7.79 
TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        6.54         2.01         0.39         0.20         3.02         3.58 
TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
       26.43         6.87         3.55         2.53 

  DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE 
                          0.07                           0.10 
  DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE 
                         72.23                          70.06 
  DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE 
                         2.975                          1.445 
[1] "0.1 - 72.2 (3.0)" "0.1 - 70.1 (1.4)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 33(16P13.3) MUTATED"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 33(16P13.3) MUTATED"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 33(16P13.3) MUTATED"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 33(16P13.3) MUTATED"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 33(16P13.3) MUTATED"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 33(16P13.3) MUTATED"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 33(16P13.3) MUTATED" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 33(16P13.3) WILD-TYPE"   "DEL PEAK 33(16P13.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 33(16P13.3) WILD-TYPE" "DEL PEAK 33(16P13.3) WILD-TYPE" 
[1] "hr=" "1.7"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(16P13.3) MUTATED      6   14
  DEL PEAK 33(16P13.3) WILD-TYPE   59   82
        clus
vv       DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  FEMALE                            6                             59
  MALE                             14                             82
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 33(16P13.3) MUTATED                                       1
  DEL PEAK 33(16P13.3) WILD-TYPE                                    18
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 33(16P13.3) MUTATED                                                       12
  DEL PEAK 33(16P13.3) WILD-TYPE                                                     67
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 33(16P13.3) MUTATED                                           0
  DEL PEAK 33(16P13.3) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 33(16P13.3) MUTATED                                                   4
  DEL PEAK 33(16P13.3) WILD-TYPE                                                 5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 33(16P13.3) MUTATED                                                    0
  DEL PEAK 33(16P13.3) WILD-TYPE                                                  3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 33(16P13.3) MUTATED                                                  3
  DEL PEAK 33(16P13.3) WILD-TYPE                                                7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 33(16P13.3) MUTATED                                                                        0
  DEL PEAK 33(16P13.3) WILD-TYPE                                                                     35
D59V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 33(16P13.3) MUTATED    0  7  9  1
  DEL PEAK 33(16P13.3) WILD-TYPE  6 46 50 32
D59V5, multiclass
    clus
vv   DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  T1                            0                              6
  T2                            7                             46
  T3                            9                             50
  T4                            1                             32
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 33(16P13.3) MUTATED    6  8  1  2
  DEL PEAK 33(16P13.3) WILD-TYPE 44 49 23 17
D59V6, multiclass
    clus
vv   DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  N0                            6                             44
  N1                            8                             49
  N2                            1                             23
  N3                            2                             17
                                vv
clus                              M0  M1  MX
  DEL PEAK 33(16P13.3) MUTATED    19   1   0
  DEL PEAK 33(16P13.3) WILD-TYPE 113  17  11
D59V7, multiclass
    clus
vv   DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  M0                           19                            113
  M1                            1                             17
  MX                            0                             11
                                vv
clus                              I II III IV
  DEL PEAK 33(16P13.3) MUTATED    3  6   4  3
  DEL PEAK 33(16P13.3) WILD-TYPE 22 37  44 26
D59V8, multiclass
     clus
vv    DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  I                              3                             22
  II                             6                             37
  III                            4                             44
  IV                             3                             26
D59V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(16P13.3) MUTATED      1   19
  DEL PEAK 33(16P13.3) WILD-TYPE    4  137
     clus
vv    DEL PEAK 33(16P13.3) MUTATED DEL PEAK 33(16P13.3) WILD-TYPE
  NO                             1                              4
  YES                           19                            137

Clustering(60) Variable = Del Peak 34(16q23.1) mutation analysis
D60V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 34(16Q23.1) MUTATED   35  4
  DEL PEAK 34(16Q23.1) WILD-TYPE 73 12
  DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE 
                            39                             85 
  DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE 
                             4                             12 
$`DEL PEAK 34(16Q23.1) MUTATED`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6706 TCGA-BR-7703 
        5.62         0.10         1.35         0.82         2.17         0.46 
TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7723 TCGA-BR-7901 TCGA-CD-5800 TCGA-CD-5802 
        1.05         0.69         4.54         0.95         0.36         0.30 
TCGA-CD-5803 TCGA-CG-4305 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4444 
        0.07        15.95        52.96         8.05        54.05        47.05 
TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5723 TCGA-CG-5724 
       19.07        12.03         7.07         1.02        70.06        12.03 
TCGA-CG-5725 TCGA-CG-5727 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6525 
       15.02        31.04         8.65         3.58         4.54         5.95 
TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-EQ-8122 TCGA-F1-6875 
        6.61         1.68         4.70         4.04         7.79        72.23 
TCGA-FP-7916 TCGA-FP-7998 TCGA-IN-7808 
        3.02         3.58         3.55 

$`DEL PEAK 34(16Q23.1) WILD-TYPE`
TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6565 TCGA-BR-6566 
        0.95         1.41         1.35         0.85         0.62         0.62 
TCGA-BR-6705 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 
        1.71         0.99         1.22         0.66         1.12         0.76 
TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7704 TCGA-BR-7707 
        0.66         0.26         1.22         1.48         1.25         0.13 
TCGA-BR-7716 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.82         0.16         0.99         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 TCGA-CG-4300 
        1.48         0.76         0.82         0.69         0.49        20.02 
TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4306 TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4443 
        3.02        27.02         1.02         4.01        14.01        29.98 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 
       21.99         1.02         8.98        18.94        12.00         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         6.94         1.02         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
        0.95        28.96        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        7.99         9.80        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 
        0.69         4.14         3.65         2.93         4.27         0.62 
TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 TCGA-HJ-7597 TCGA-IN-7806 
        6.54         2.01         0.39         0.20        26.43         6.87 
TCGA-IP-7968 
        2.53 

  DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE 
                          0.07                           0.13 
  DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE 
                         72.23                          65.10 
  DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE 
                          4.54                           1.18 
[1] "0.1 - 72.2 (4.5)" "0.1 - 65.1 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 34(16Q23.1) WILD-TYPE"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 34(16Q23.1) MUTATED"   "DEL PEAK 34(16Q23.1) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 34(16Q23.1) WILD-TYPE" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "DEL PEAK 34(16Q23.1) MUTATED" "DEL PEAK 34(16Q23.1) WILD-TYPE" 
[1] "hr=" "3.2"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(16Q23.1) MUTATED     16   40
  DEL PEAK 34(16Q23.1) WILD-TYPE   49   56
        clus
vv       DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  FEMALE                           16                             49
  MALE                             40                             56
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 34(16Q23.1) MUTATED                                       9
  DEL PEAK 34(16Q23.1) WILD-TYPE                                    10
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 34(16Q23.1) MUTATED                                                       24
  DEL PEAK 34(16Q23.1) WILD-TYPE                                                     55
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 34(16Q23.1) MUTATED                                           0
  DEL PEAK 34(16Q23.1) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 34(16Q23.1) MUTATED                                                   5
  DEL PEAK 34(16Q23.1) WILD-TYPE                                                 4
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 34(16Q23.1) MUTATED                                                    2
  DEL PEAK 34(16Q23.1) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 34(16Q23.1) MUTATED                                                  6
  DEL PEAK 34(16Q23.1) WILD-TYPE                                                4
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 34(16Q23.1) MUTATED                                                                        8
  DEL PEAK 34(16Q23.1) WILD-TYPE                                                                     27
D60V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 34(16Q23.1) MUTATED    1 22 25  6
  DEL PEAK 34(16Q23.1) WILD-TYPE  5 31 34 27
D60V5, multiclass
    clus
vv   DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  T1                            1                              5
  T2                           22                             31
  T3                           25                             34
  T4                            6                             27
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 34(16Q23.1) MUTATED   14 22  7 10
  DEL PEAK 34(16Q23.1) WILD-TYPE 36 35 17  9
D60V6, multiclass
    clus
vv   DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  N0                           14                             36
  N1                           22                             35
  N2                            7                             17
  N3                           10                              9
                                vv
clus                             M0 M1 MX
  DEL PEAK 34(16Q23.1) MUTATED   49  2  5
  DEL PEAK 34(16Q23.1) WILD-TYPE 83 16  6
D60V7, multiclass
    clus
vv   DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  M0                           49                             83
  M1                            2                             16
  MX                            5                              6
                                vv
clus                              I II III IV
  DEL PEAK 34(16Q23.1) MUTATED    8 19  19  6
  DEL PEAK 34(16Q23.1) WILD-TYPE 17 24  29 23
D60V8, multiclass
     clus
vv    DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  I                              8                             17
  II                            19                             24
  III                           19                             29
  IV                             6                             23
D60V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 34(16Q23.1) MUTATED      3   53
  DEL PEAK 34(16Q23.1) WILD-TYPE    2  103
     clus
vv    DEL PEAK 34(16Q23.1) MUTATED DEL PEAK 34(16Q23.1) WILD-TYPE
  NO                             3                              2
  YES                           53                            103

Clustering(61) Variable = Del Peak 35(17p12) mutation analysis
D61V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 35(17P12) MUTATED   39  5
  DEL PEAK 35(17P12) WILD-TYPE 69 11
  DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE 
                          44                           80 
  DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE 
                           5                           11 
$`DEL PEAK 35(17P12) MUTATED`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-7197 TCGA-BR-7704 
        0.10         1.35         0.62         1.22         1.48         1.25 
TCGA-BR-7715 TCGA-BR-7723 TCGA-CD-5799 TCGA-CD-5800 TCGA-CG-4300 TCGA-CG-4301 
        1.05         4.54         0.69         0.36        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4443 
       27.02        52.96         8.05        54.05         4.01        29.98 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5718 TCGA-CG-5719 
       47.05        19.07         7.07         1.02         1.02         1.02 
TCGA-CG-5725 TCGA-CG-5727 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5579 TCGA-D7-6519 
       15.02        31.04         4.01        55.04         4.54        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 
        9.63         8.19         5.95         6.61         4.14         1.68 
TCGA-D7-6815 TCGA-D7-6820 TCGA-D7-6822 TCGA-F1-6875 TCGA-FP-7916 TCGA-HJ-7597 
        3.65         2.93         4.27        72.23         3.02        26.43 
TCGA-IN-7806 TCGA-IP-7968 
        6.87         2.53 

$`DEL PEAK 35(17P12) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6564 
        5.62         0.95         1.41         1.35         0.85         0.82 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 
        0.62         1.71         2.17         0.99         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7707 
        0.76         0.66         0.26         1.22         0.46         0.13 
TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
        0.82         0.69         0.16         0.99         0.95         0.69 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.16         1.08         0.82         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.49         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5801 
        1.18         1.55         1.48         0.76         0.82         0.49 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4441 TCGA-CG-4455 
        0.30         0.07        15.95         1.02        14.01        12.03 
TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 
       21.99         1.02         8.98        18.94        12.00         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         6.94         0.99         5.98         0.95        70.06 
TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 
       12.03        28.96        65.10        21.07         7.99         8.65 
TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6817 TCGA-D7-6818 
        3.58         9.80         6.90         0.69         4.70         4.04 
TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7829 
        0.62         7.79         6.54         2.01         0.39         0.20 
TCGA-FP-7998 TCGA-IN-7808 
        3.58         3.55 

  DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE 
                        0.10                         0.07 
  DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE 
                       72.23                        70.06 
  DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE 
                       4.405                        1.020 
[1] "0.1 - 72.2 (4.4)" "0.1 - 70.1 (1.0)"
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4437                   TCGA-CG-4438 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4437                   TCGA-CG-4438 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-B7-5816                   TCGA-B7-5818 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-BR-6452                   TCGA-BR-6455 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6457                   TCGA-BR-6458 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-BR-6563                   TCGA-BR-6564 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6565                   TCGA-BR-6566 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6705                   TCGA-BR-6706 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6707                   TCGA-BR-6709 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-BR-6710                   TCGA-BR-6801 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6802                   TCGA-BR-6803 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-6852                   TCGA-BR-7196 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7197                   TCGA-BR-7703 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7704                   TCGA-BR-7707 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7715                   TCGA-BR-7716 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7717                   TCGA-BR-7722 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7723                   TCGA-BR-7851 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7901                   TCGA-BR-7957 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-7958                   TCGA-BR-7959 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8059                   TCGA-BR-8060 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8077                   TCGA-BR-8078 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8080                   TCGA-BR-8081 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8284                   TCGA-BR-8285 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8286                   TCGA-BR-8289 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8291                   TCGA-BR-8295 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-BR-8296                   TCGA-BR-8297 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CD-5798                   TCGA-CD-5799 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CD-5800                   TCGA-CD-5801 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CD-5802                   TCGA-CD-5803 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4300                   TCGA-CG-4301 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4304                   TCGA-CG-4305 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4306                   TCGA-CG-4436 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4437                   TCGA-CG-4438 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4440                   TCGA-CG-4441 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4443                   TCGA-CG-4444 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-4449                   TCGA-CG-4455 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4460                   TCGA-CG-4462 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4465                   TCGA-CG-4466 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4469                   TCGA-CG-4472 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-4474                   TCGA-CG-4477 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5716                   TCGA-CG-5717 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5718                   TCGA-CG-5719 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5720                   TCGA-CG-5721 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5722                   TCGA-CG-5723 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5724                   TCGA-CG-5725 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5726                   TCGA-CG-5727 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5728                   TCGA-CG-5730 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-CG-5732                   TCGA-CG-5733 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-CG-5734                   TCGA-D7-5577 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-D7-5578                   TCGA-D7-5579 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6518                   TCGA-D7-6519 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6520                   TCGA-D7-6521 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6522                   TCGA-D7-6524 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-D7-6525                   TCGA-D7-6526 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6527                   TCGA-D7-6528 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6815                   TCGA-D7-6817 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-D7-6818                   TCGA-D7-6820 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-D7-6822                   TCGA-EQ-5647 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-EQ-8122                   TCGA-F1-6177 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-F1-6874                   TCGA-F1-6875 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-FP-7735                   TCGA-FP-7829 
"DEL PEAK 35(17P12) WILD-TYPE" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-FP-7916                   TCGA-FP-7998 
  "DEL PEAK 35(17P12) MUTATED" "DEL PEAK 35(17P12) WILD-TYPE" 
                  TCGA-HJ-7597                   TCGA-IN-7806 
  "DEL PEAK 35(17P12) MUTATED"   "DEL PEAK 35(17P12) MUTATED" 
                  TCGA-IN-7808                   TCGA-IP-7968 
"DEL PEAK 35(17P12) WILD-TYPE"   "DEL PEAK 35(17P12) MUTATED" 
[1] "hr=" "3.8"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 35(17P12) MUTATED     20   35
  DEL PEAK 35(17P12) WILD-TYPE   45   61
        clus
vv       DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  FEMALE                         20                           45
  MALE                           35                           61
                              vv
clus                           STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 35(17P12) MUTATED                                       6
  DEL PEAK 35(17P12) WILD-TYPE                                    13
                              vv
clus                           STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 35(17P12) MUTATED                                                       20
  DEL PEAK 35(17P12) WILD-TYPE                                                     59
                              vv
clus                           STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 35(17P12) MUTATED                                           1
  DEL PEAK 35(17P12) WILD-TYPE                                         0
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 35(17P12) MUTATED                                                   4
  DEL PEAK 35(17P12) WILD-TYPE                                                 5
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 35(17P12) MUTATED                                                    2
  DEL PEAK 35(17P12) WILD-TYPE                                                  1
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 35(17P12) MUTATED                                                  7
  DEL PEAK 35(17P12) WILD-TYPE                                                3
                              vv
clus                           STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 35(17P12) MUTATED                                                                       14
  DEL PEAK 35(17P12) WILD-TYPE                                                                     21
D61V4, multiclass
                              vv
clus                           T1 T2 T3 T4
  DEL PEAK 35(17P12) MUTATED    1 28 20  4
  DEL PEAK 35(17P12) WILD-TYPE  5 25 39 29
D61V5, multiclass
    clus
vv   DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  T1                          1                            5
  T2                         28                           25
  T3                         20                           39
  T4                          4                           29
                              vv
clus                           N0 N1 N2 N3
  DEL PEAK 35(17P12) MUTATED   20 16 12  5
  DEL PEAK 35(17P12) WILD-TYPE 30 41 12 14
D61V6, multiclass
    clus
vv   DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  N0                         20                           30
  N1                         16                           41
  N2                         12                           12
  N3                          5                           14
                              vv
clus                           M0 M1 MX
  DEL PEAK 35(17P12) MUTATED   47  4  4
  DEL PEAK 35(17P12) WILD-TYPE 85 14  7
D61V7, multiclass
    clus
vv   DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  M0                         47                           85
  M1                          4                           14
  MX                          4                            7
                              vv
clus                            I II III IV
  DEL PEAK 35(17P12) MUTATED   12 18  14  8
  DEL PEAK 35(17P12) WILD-TYPE 13 25  34 21
D61V8, multiclass
     clus
vv    DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  I                           12                           13
  II                          18                           25
  III                         14                           34
  IV                           8                           21
D61V9, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 35(17P12) MUTATED      4   51
  DEL PEAK 35(17P12) WILD-TYPE    1  105
     clus
vv    DEL PEAK 35(17P12) MUTATED DEL PEAK 35(17P12) WILD-TYPE
  NO                           4                            1
  YES                         51                          105

Clustering(62) Variable = Del Peak 36(17q24.3) mutation analysis
D62V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 36(17Q24.3) MUTATED   14  3
  DEL PEAK 36(17Q24.3) WILD-TYPE 94 13
  DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE 
                            17                            107 
  DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE 
                             3                             13 
$`DEL PEAK 36(17Q24.3) MUTATED`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-7715 TCGA-BR-7723 TCGA-CG-4300 TCGA-CG-4438 
        1.35         0.62         1.05         4.54        20.02        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4444 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-5730 
        4.01        14.01        47.05         7.07         1.02         4.01 
TCGA-D7-5579 TCGA-D7-6526 TCGA-D7-6528 TCGA-D7-6820 TCGA-D7-6822 
        4.54         6.61         1.68         2.93         4.27 

$`DEL PEAK 36(17Q24.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7717 
        1.48         0.46         1.25         0.13         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         0.99         0.95         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 
        1.48         0.76         0.82         0.69         0.36         0.49 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.30         0.07         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       52.96         8.05        29.98        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4477 TCGA-CG-5716 
        1.02         8.98        18.94        12.00         1.02         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        6.94         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
       70.06        12.03        15.02        28.96        31.04        65.10 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 
       55.04        21.07         7.99         8.65         3.58         9.80 
TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
       15.65         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-EQ-5647 TCGA-EQ-8122 
        4.14         3.65         4.70         4.04         0.62         7.79 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 
        6.54         2.01        72.23         0.39         0.20         3.02 
TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        3.58        26.43         6.87         3.55         2.53 

  DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE 
                          0.62                           0.07 
  DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE 
                         54.05                          72.23 
  DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE 
                          4.27                           1.32 
[1] "0.6 - 54.0 (4.3)" "0.1 - 72.2 (1.3)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 36(17Q24.3) MUTATED"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 36(17Q24.3) MUTATED"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 36(17Q24.3) MUTATED"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 36(17Q24.3) WILD-TYPE"   "DEL PEAK 36(17Q24.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 36(17Q24.3) MUTATED" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 36(17Q24.3) WILD-TYPE" "DEL PEAK 36(17Q24.3) WILD-TYPE" 
[1] "hr=" "1.2"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 36(17Q24.3) MUTATED      8   15
  DEL PEAK 36(17Q24.3) WILD-TYPE   57   81
        clus
vv       DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  FEMALE                            8                             57
  MALE                             15                             81
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 36(17Q24.3) MUTATED                                       1
  DEL PEAK 36(17Q24.3) WILD-TYPE                                    18
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 36(17Q24.3) MUTATED                                                       10
  DEL PEAK 36(17Q24.3) WILD-TYPE                                                     69
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 36(17Q24.3) MUTATED                                           0
  DEL PEAK 36(17Q24.3) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 36(17Q24.3) MUTATED                                                   1
  DEL PEAK 36(17Q24.3) WILD-TYPE                                                 8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 36(17Q24.3) MUTATED                                                    0
  DEL PEAK 36(17Q24.3) WILD-TYPE                                                  3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 36(17Q24.3) MUTATED                                                  5
  DEL PEAK 36(17Q24.3) WILD-TYPE                                                5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 36(17Q24.3) MUTATED                                                                        5
  DEL PEAK 36(17Q24.3) WILD-TYPE                                                                     30
D62V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 36(17Q24.3) MUTATED    0  7  9  3
  DEL PEAK 36(17Q24.3) WILD-TYPE  6 46 50 30
D62V5, multiclass
    clus
vv   DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  T1                            0                              6
  T2                            7                             46
  T3                            9                             50
  T4                            3                             30
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 36(17Q24.3) MUTATED    5  4  8  2
  DEL PEAK 36(17Q24.3) WILD-TYPE 45 53 16 17
D62V6, multiclass
    clus
vv   DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  N0                            5                             45
  N1                            4                             53
  N2                            8                             16
  N3                            2                             17
                                vv
clus                              M0  M1  MX
  DEL PEAK 36(17Q24.3) MUTATED    20   3   0
  DEL PEAK 36(17Q24.3) WILD-TYPE 112  15  11
D62V7, multiclass
    clus
vv   DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  M0                           20                            112
  M1                            3                             15
  MX                            0                             11
                                vv
clus                              I II III IV
  DEL PEAK 36(17Q24.3) MUTATED    2  6   5  5
  DEL PEAK 36(17Q24.3) WILD-TYPE 23 37  43 24
D62V8, multiclass
     clus
vv    DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  I                              2                             23
  II                             6                             37
  III                            5                             43
  IV                             5                             24
D62V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 36(17Q24.3) MUTATED      0   23
  DEL PEAK 36(17Q24.3) WILD-TYPE    5  133
     clus
vv    DEL PEAK 36(17Q24.3) MUTATED DEL PEAK 36(17Q24.3) WILD-TYPE
  NO                             0                              5
  YES                           23                            133

Clustering(63) Variable = Del Peak 37(18q21.2) mutation analysis
D63V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 37(18Q21.2) MUTATED   43  4
  DEL PEAK 37(18Q21.2) WILD-TYPE 65 12
  DEL PEAK 37(18Q21.2) MUTATED DEL PEAK 37(18Q21.2) WILD-TYPE 
                            47                             77 
  DEL PEAK 37(18Q21.2) MUTATED DEL PEAK 37(18Q21.2) WILD-TYPE 
                             4                             12 
$`DEL PEAK 37(18Q21.2) MUTATED`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6709 TCGA-BR-7716 TCGA-BR-7722 
        0.10         1.35         0.82         1.22         0.82         0.16 
TCGA-BR-7723 TCGA-BR-7901 TCGA-BR-7957 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 
        4.54         0.95         0.69         0.69         0.36         0.49 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4436 TCGA-CG-4437 
        0.30         0.07         3.02        27.02        52.96         8.05 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4444 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 
       54.05         4.01        47.05        18.94         7.07        12.00 
TCGA-CG-4477 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5730 TCGA-CG-5732 
        1.02         1.02         1.02        12.03         4.01        55.04 
TCGA-D7-5577 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6525 
        8.65         4.54         9.80        15.65         8.19         5.95 
TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 
        6.61         4.14         3.65         4.27         0.62         7.79 
TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 TCGA-IN-7808 TCGA-IP-7968 
        0.20         3.02         3.58         3.55         2.53 

$`DEL PEAK 37(18Q21.2) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6565 
        5.62         0.95         1.41         1.35         0.85         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 
        0.62         1.71         2.17         0.99         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        0.76         0.66         0.26         1.22         1.48         0.46 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7851 TCGA-BR-7958 
        1.25         0.13         1.05         0.69         0.99         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CG-4300 TCGA-CG-4305 
        1.55         1.48         0.76         0.82        20.02        15.95 
TCGA-CG-4306 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
        1.02        14.01        29.98        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5720 
        1.02         8.98         1.02         1.02         6.94         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
        5.98         0.95        70.06        15.02        28.96        31.04 
TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5578 TCGA-D7-6520 TCGA-D7-6522 
       65.10        21.07         7.99         3.58         9.63         6.90 
TCGA-D7-6524 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-F1-6177 
        0.69         1.68         4.70         4.04         2.93         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-HJ-7597 TCGA-IN-7806 
        2.01        72.23         0.39        26.43         6.87 

  DEL PEAK 37(18Q21.2) MUTATED DEL PEAK 37(18Q21.2) WILD-TYPE 
                          0.07                           0.13 
  DEL PEAK 37(18Q21.2) MUTATED DEL PEAK 37(18Q21.2) WILD-TYPE 
                         55.04                          72.23 
  DEL PEAK 37(18Q21.2) MUTATED DEL PEAK 37(18Q21.2) WILD-TYPE 
                          3.65                           1.25 
[1] "0.1 - 55.0 (3.6)" "0.1 - 72.2 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 37(18Q21.2) MUTATED" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 37(18Q21.2) WILD-TYPE"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 37(18Q21.2) WILD-TYPE" "DEL PEAK 37(18Q21.2) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
  "DEL PEAK 37(18Q21.2) MUTATED"   "DEL PEAK 37(18Q21.2) MUTATED" 
[1] "hr=" "1.8"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(18Q21.2) MUTATED     25   38
  DEL PEAK 37(18Q21.2) WILD-TYPE   40   58
        clus
vv       DEL PEAK 37(18Q21.2) MUTATED DEL PEAK 37(18Q21.2) WILD-TYPE
  FEMALE                           25                             40
  MALE                             38                             58
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 37(18Q21.2) MUTATED                                      10
  DEL PEAK 37(18Q21.2) WILD-TYPE                                     9
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 37(18Q21.2) MUTATED                                                       26
  DEL PEAK 37(18Q21.2) WILD-TYPE                                                     53
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 37(18Q21.2) MUTATED                                           0
  DEL PEAK 37(18Q21.2) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 37(18Q21.2) MUTATED                                                   3
  DEL PEAK 37(18Q21.2) WILD-TYPE                                                 6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 37(18Q21.2) MUTATED                                                    2
  DEL PEAK 37(18Q21.2) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 37(18Q21.2) MUTATED                                                  5
  DEL PEAK 37(18Q21.2) WILD-TYPE                                                5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 37(18Q21.2) MUTATED                                                                       14
  DEL PEAK 37(18Q21.2) WILD-TYPE                                                                     21
D63V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 37(18Q21.2) MUTATED    0 24 27  9
  DEL PEAK 37(18Q21.2) WILD-TYPE  6 29 32 24
D63V5, multiclass
    clus
vv   DEL PEAK 37(18Q21.2) MUTATED DEL PEAK 37(18Q21.2) WILD-TYPE
  T1                            0                              6
  T2                           24                             29
  T3                           27                             32
  T4                            9                             24
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 37(18Q21.2) MUTATED   11 24 11 12
  DEL PEAK 37(18Q21.2) WILD-TYPE 39 33 13  7
D63V6, multiclass
    clus
vv   DEL PEAK 37(18Q21.2) MUTATED DEL PEAK 37(18Q21.2) WILD-TYPE
  N0                           11                             39
  N1                           24                             33
  N2                           11                             13
  N3                           12                              7
                                vv
clus                             M0 M1 MX
  DEL PEAK 37(18Q21.2) MUTATED   50  8  5
  DEL PEAK 37(18Q21.2) WILD-TYPE 82 10  6
D63V7, multiclass
    clus
vv   DEL PEAK 37(18Q21.2) MUTATED DEL PEAK 37(18Q21.2) WILD-TYPE
  M0                           50                             82
  M1                            8                             10
  MX                            5                              6
                                vv
clus                              I II III IV
  DEL PEAK 37(18Q21.2) MUTATED    7 14  22 14
  DEL PEAK 37(18Q21.2) WILD-TYPE 18 29  26 15
D63V8, multiclass
     clus
vv    DEL PEAK 37(18Q21.2) MUTATED DEL PEAK 37(18Q21.2) WILD-TYPE
  I                              7                             18
  II                            14                             29
  III                           22                             26
  IV                            14                             15
D63V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 37(18Q21.2) MUTATED      2   61
  DEL PEAK 37(18Q21.2) WILD-TYPE    3   95
     clus
vv    DEL PEAK 37(18Q21.2) MUTATED DEL PEAK 37(18Q21.2) WILD-TYPE
  NO                             2                              3
  YES                           61                             95

Clustering(64) Variable = Del Peak 38(18q22.3) mutation analysis
D64V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 38(18Q22.3) MUTATED   38  4
  DEL PEAK 38(18Q22.3) WILD-TYPE 70 12
  DEL PEAK 38(18Q22.3) MUTATED DEL PEAK 38(18Q22.3) WILD-TYPE 
                            42                             82 
  DEL PEAK 38(18Q22.3) MUTATED DEL PEAK 38(18Q22.3) WILD-TYPE 
                             4                             12 
$`DEL PEAK 38(18Q22.3) MUTATED`
TCGA-B7-5818 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6709 TCGA-BR-7715 TCGA-BR-7716 
        0.10         1.35         0.82         1.22         1.05         0.82 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7957 TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5802 
        0.16         4.54         0.69         0.69         0.49         0.30 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
        0.07        20.02         3.02        52.96         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 
        4.01        47.05        19.07        18.94         7.07         1.02 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5577 
        1.02         1.02        12.03         4.01        55.04         8.65 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        4.54         9.80        15.65         5.95         6.61         4.14 
TCGA-D7-6815 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        3.65         0.62         7.79         0.20         3.02         3.58 

$`DEL PEAK 38(18Q22.3) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 TCGA-BR-6565 
        5.62         0.95         1.41         1.35         0.85         0.62 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 
        0.62         1.71         2.17         0.99         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 
        0.76         0.66         0.26         1.22         1.48         0.46 
TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7717 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7958 
        1.25         0.13         0.69         0.99         0.95         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5800 TCGA-CG-4304 
        1.55         1.48         0.76         0.82         0.36        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4455 TCGA-CG-4460 
       15.95         1.02        14.01        29.98        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 
        1.02         8.98        12.00         1.02         1.02         6.94 
TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 
        0.99         5.98         0.95        70.06        15.02        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5578 TCGA-D7-6520 
       31.04        65.10        21.07         7.99         3.58         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6818 
        8.19         6.90         0.69         1.68         4.70         4.04 
TCGA-D7-6820 TCGA-D7-6822 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 
        2.93         4.27         6.54         2.01        72.23         0.39 
TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
       26.43         6.87         3.55         2.53 

  DEL PEAK 38(18Q22.3) MUTATED DEL PEAK 38(18Q22.3) WILD-TYPE 
                          0.07                           0.13 
  DEL PEAK 38(18Q22.3) MUTATED DEL PEAK 38(18Q22.3) WILD-TYPE 
                         55.04                          72.23 
  DEL PEAK 38(18Q22.3) MUTATED DEL PEAK 38(18Q22.3) WILD-TYPE 
                         3.830                          1.335 
[1] "0.1 - 55.0 (3.8)" "0.1 - 72.2 (1.3)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 38(18Q22.3) MUTATED" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 38(18Q22.3) WILD-TYPE"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 38(18Q22.3) MUTATED"   "DEL PEAK 38(18Q22.3) MUTATED" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 38(18Q22.3) WILD-TYPE" "DEL PEAK 38(18Q22.3) WILD-TYPE" 
[1] "hr=" "1.6"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 38(18Q22.3) MUTATED     24   35
  DEL PEAK 38(18Q22.3) WILD-TYPE   41   61
        clus
vv       DEL PEAK 38(18Q22.3) MUTATED DEL PEAK 38(18Q22.3) WILD-TYPE
  FEMALE                           24                             41
  MALE                             35                             61
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 38(18Q22.3) MUTATED                                       8
  DEL PEAK 38(18Q22.3) WILD-TYPE                                    11
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 38(18Q22.3) MUTATED                                                       26
  DEL PEAK 38(18Q22.3) WILD-TYPE                                                     53
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 38(18Q22.3) MUTATED                                           0
  DEL PEAK 38(18Q22.3) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 38(18Q22.3) MUTATED                                                   4
  DEL PEAK 38(18Q22.3) WILD-TYPE                                                 5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 38(18Q22.3) MUTATED                                                    1
  DEL PEAK 38(18Q22.3) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 38(18Q22.3) MUTATED                                                  4
  DEL PEAK 38(18Q22.3) WILD-TYPE                                                6
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 38(18Q22.3) MUTATED                                                                       14
  DEL PEAK 38(18Q22.3) WILD-TYPE                                                                     21
D64V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 38(18Q22.3) MUTATED    0 22 25  8
  DEL PEAK 38(18Q22.3) WILD-TYPE  6 31 34 25
D64V5, multiclass
    clus
vv   DEL PEAK 38(18Q22.3) MUTATED DEL PEAK 38(18Q22.3) WILD-TYPE
  T1                            0                              6
  T2                           22                             31
  T3                           25                             34
  T4                            8                             25
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 38(18Q22.3) MUTATED   10 24 10 11
  DEL PEAK 38(18Q22.3) WILD-TYPE 40 33 14  8
D64V6, multiclass
    clus
vv   DEL PEAK 38(18Q22.3) MUTATED DEL PEAK 38(18Q22.3) WILD-TYPE
  N0                           10                             40
  N1                           24                             33
  N2                           10                             14
  N3                           11                              8
                                vv
clus                             M0 M1 MX
  DEL PEAK 38(18Q22.3) MUTATED   47  7  5
  DEL PEAK 38(18Q22.3) WILD-TYPE 85 11  6
D64V7, multiclass
    clus
vv   DEL PEAK 38(18Q22.3) MUTATED DEL PEAK 38(18Q22.3) WILD-TYPE
  M0                           47                             85
  M1                            7                             11
  MX                            5                              6
                                vv
clus                              I II III IV
  DEL PEAK 38(18Q22.3) MUTATED    6 15  19 13
  DEL PEAK 38(18Q22.3) WILD-TYPE 19 28  29 16
D64V8, multiclass
     clus
vv    DEL PEAK 38(18Q22.3) MUTATED DEL PEAK 38(18Q22.3) WILD-TYPE
  I                              6                             19
  II                            15                             28
  III                           19                             29
  IV                            13                             16
D64V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 38(18Q22.3) MUTATED      3   56
  DEL PEAK 38(18Q22.3) WILD-TYPE    2  100
     clus
vv    DEL PEAK 38(18Q22.3) MUTATED DEL PEAK 38(18Q22.3) WILD-TYPE
  NO                             3                              2
  YES                           56                            100

Clustering(65) Variable = Del Peak 39(19p13.3) mutation analysis
D65V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 39(19P13.3) MUTATED   31  5
  DEL PEAK 39(19P13.3) WILD-TYPE 77 11
  DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE 
                            36                             88 
  DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE 
                             5                             11 
$`DEL PEAK 39(19P13.3) MUTATED`
TCGA-BR-6458 TCGA-BR-6565 TCGA-BR-7197 TCGA-BR-7716 TCGA-BR-7723 TCGA-BR-7901 
        1.35         0.62         1.48         0.82         4.54         0.95 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5802 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4436 
        0.69         0.36         0.30        20.02        27.02        52.96 
TCGA-CG-4438 TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4466 
       54.05         4.01        29.98        19.07        21.99        18.94 
TCGA-CG-5718 TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5730 TCGA-CG-5732 TCGA-D7-5578 
        1.02        12.03        15.02         4.01        55.04         3.58 
TCGA-D7-6520 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6815 TCGA-D7-6817 
        9.63         5.95         6.61         4.14         3.65         4.70 
TCGA-D7-6818 TCGA-D7-6820 TCGA-F1-6875 TCGA-FP-7916 TCGA-IN-7806 TCGA-IP-7968 
        4.04         2.93        72.23         3.02         6.87         2.53 

$`DEL PEAK 39(19P13.3) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 
        0.82         0.62         1.71         2.17         0.99         1.22 
TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 
        0.66         1.12         0.76         0.66         0.26         1.22 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7717 TCGA-BR-7722 
        0.46         1.25         0.13         1.05         0.69         0.16 
TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.99         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4306 
        0.82         0.49         0.07         3.02        15.95         1.02 
TCGA-CG-4437 TCGA-CG-4441 TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 
        8.05        14.01        47.05        12.03         1.02         8.98 
TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 TCGA-CG-5716 TCGA-CG-5717 
        7.07        12.00         1.02         1.02         1.02         6.94 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 
        1.02         0.99         5.98         0.95        70.06        28.96 
TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5579 
       31.04        65.10        21.07         7.99         8.65         4.54 
TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6528 
        9.80        15.65         8.19         6.90         0.69         1.68 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 
        4.27         0.62         7.79         6.54         2.01         0.39 
TCGA-FP-7829 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7808 
        0.20         3.58        26.43         3.55 

  DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE 
                          0.30                           0.07 
  DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE 
                         72.23                          70.06 
  DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE 
                          4.34                           1.10 
[1] "0.3 - 72.2 (4.3)" "0.1 - 70.1 (1.1)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6520                     TCGA-D7-6521 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
  "DEL PEAK 39(19P13.3) MUTATED"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 39(19P13.3) WILD-TYPE" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
  "DEL PEAK 39(19P13.3) MUTATED" "DEL PEAK 39(19P13.3) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 39(19P13.3) WILD-TYPE"   "DEL PEAK 39(19P13.3) MUTATED" 
[1] "hr=" "2.3"
D65V2, continuous
D65V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(19P13.3) MUTATED     14   35
  DEL PEAK 39(19P13.3) WILD-TYPE   51   61
        clus
vv       DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  FEMALE                           14                             51
  MALE                             35                             61
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 39(19P13.3) MUTATED                                       6
  DEL PEAK 39(19P13.3) WILD-TYPE                                    13
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 39(19P13.3) MUTATED                                                       22
  DEL PEAK 39(19P13.3) WILD-TYPE                                                     57
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 39(19P13.3) MUTATED                                           0
  DEL PEAK 39(19P13.3) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 39(19P13.3) MUTATED                                                   2
  DEL PEAK 39(19P13.3) WILD-TYPE                                                 7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 39(19P13.3) MUTATED                                                    2
  DEL PEAK 39(19P13.3) WILD-TYPE                                                  1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 39(19P13.3) MUTATED                                                  6
  DEL PEAK 39(19P13.3) WILD-TYPE                                                4
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 39(19P13.3) MUTATED                                                                       10
  DEL PEAK 39(19P13.3) WILD-TYPE                                                                     25
D65V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 39(19P13.3) MUTATED    1 19 20  5
  DEL PEAK 39(19P13.3) WILD-TYPE  5 34 39 28
D65V5, multiclass
    clus
vv   DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  T1                            1                              5
  T2                           19                             34
  T3                           20                             39
  T4                            5                             28
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 39(19P13.3) MUTATED   12 16  9  8
  DEL PEAK 39(19P13.3) WILD-TYPE 38 41 15 11
D65V6, multiclass
    clus
vv   DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  N0                           12                             38
  N1                           16                             41
  N2                            9                             15
  N3                            8                             11
                                vv
clus                             M0 M1 MX
  DEL PEAK 39(19P13.3) MUTATED   41  4  4
  DEL PEAK 39(19P13.3) WILD-TYPE 91 14  7
D65V7, multiclass
    clus
vv   DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  M0                           41                             91
  M1                            4                             14
  MX                            4                              7
                                vv
clus                              I II III IV
  DEL PEAK 39(19P13.3) MUTATED    7 14  14  9
  DEL PEAK 39(19P13.3) WILD-TYPE 18 29  34 20
D65V8, multiclass
     clus
vv    DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  I                              7                             18
  II                            14                             29
  III                           14                             34
  IV                             9                             20
D65V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 39(19P13.3) MUTATED      4   45
  DEL PEAK 39(19P13.3) WILD-TYPE    1  111
     clus
vv    DEL PEAK 39(19P13.3) MUTATED DEL PEAK 39(19P13.3) WILD-TYPE
  NO                             4                              1
  YES                           45                            111

Clustering(66) Variable = Del Peak 40(19q13.11) mutation analysis
D66V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 40(19Q13.11) MUTATED   14  3
  DEL PEAK 40(19Q13.11) WILD-TYPE 94 13
  DEL PEAK 40(19Q13.11) MUTATED DEL PEAK 40(19Q13.11) WILD-TYPE 
                             17                             107 
  DEL PEAK 40(19Q13.11) MUTATED DEL PEAK 40(19Q13.11) WILD-TYPE 
                              3                              13 
$`DEL PEAK 40(19Q13.11) MUTATED`
TCGA-BR-7197 TCGA-BR-7715 TCGA-BR-7723 TCGA-BR-7901 TCGA-CD-5799 TCGA-CD-5800 
        1.48         1.05         4.54         0.95         0.69         0.36 
TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4440 TCGA-CG-4466 TCGA-CG-5724 TCGA-D7-6526 
       20.02        27.02         4.01        18.94        12.03         6.61 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6820 TCGA-EQ-5647 
        4.14         1.68         4.70         2.93         0.62 

$`DEL PEAK 40(19Q13.11) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 
        5.62         0.10         0.95         1.41         1.35         1.35 
TCGA-BR-6563 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 
        0.85         0.82         0.62         0.62         1.71         2.17 
TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 
        0.99         1.22         0.66         1.12         0.76         0.66 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7716 
        0.26         1.22         0.46         1.25         0.13         0.82 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.69         0.16         0.99         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 
        1.48         0.76         0.82         0.49         0.30         0.07 
TCGA-CG-4301 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4438 
        3.02        15.95         1.02        52.96         8.05        54.05 
TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
       14.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-4477 
        1.02         8.98         7.07        12.00         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         6.94         1.02         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 
        0.95        70.06        15.02        28.96        31.04        65.10 
TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 
        4.01        55.04        21.07         7.99         8.65         3.58 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 
        4.54         9.80        15.65         9.63         8.19         6.90 
TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6815 TCGA-D7-6818 TCGA-D7-6822 TCGA-EQ-8122 
        0.69         5.95         3.65         4.04         4.27         7.79 
TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 
        6.54         2.01        72.23         0.39         0.20         3.02 
TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 TCGA-IP-7968 
        3.58        26.43         6.87         3.55         2.53 

  DEL PEAK 40(19Q13.11) MUTATED DEL PEAK 40(19Q13.11) WILD-TYPE 
                           0.36                            0.07 
  DEL PEAK 40(19Q13.11) MUTATED DEL PEAK 40(19Q13.11) WILD-TYPE 
                          27.02                           72.23 
  DEL PEAK 40(19Q13.11) MUTATED DEL PEAK 40(19Q13.11) WILD-TYPE 
                           4.01                            1.35 
[1] "0.4 - 27.0 (4.0)" "0.1 - 72.2 (1.4)"
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4449                      TCGA-CG-4455 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 40(19Q13.11) MUTATED"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4449                      TCGA-CG-4455 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 40(19Q13.11) MUTATED"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6565                      TCGA-BR-6566 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4304                      TCGA-CG-4305 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4443                      TCGA-CG-4444 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4449                      TCGA-CG-4455 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
  "DEL PEAK 40(19Q13.11) MUTATED" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 40(19Q13.11) MUTATED"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
"DEL PEAK 40(19Q13.11) WILD-TYPE"   "DEL PEAK 40(19Q13.11) MUTATED" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 40(19Q13.11) WILD-TYPE" "DEL PEAK 40(19Q13.11) WILD-TYPE" 
[1] "hr=" "1.8"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 40(19Q13.11) MUTATED      8   13
  DEL PEAK 40(19Q13.11) WILD-TYPE   57   83
        clus
vv       DEL PEAK 40(19Q13.11) MUTATED DEL PEAK 40(19Q13.11) WILD-TYPE
  FEMALE                             8                              57
  MALE                              13                              83
                                 vv
clus                              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 40(19Q13.11) MUTATED                                       2
  DEL PEAK 40(19Q13.11) WILD-TYPE                                    17
                                 vv
clus                              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 40(19Q13.11) MUTATED                                                       10
  DEL PEAK 40(19Q13.11) WILD-TYPE                                                     69
                                 vv
clus                              STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 40(19Q13.11) MUTATED                                           0
  DEL PEAK 40(19Q13.11) WILD-TYPE                                         1
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 40(19Q13.11) MUTATED                                                   0
  DEL PEAK 40(19Q13.11) WILD-TYPE                                                 9
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 40(19Q13.11) MUTATED                                                    2
  DEL PEAK 40(19Q13.11) WILD-TYPE                                                  1
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 40(19Q13.11) MUTATED                                                  4
  DEL PEAK 40(19Q13.11) WILD-TYPE                                                6
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 40(19Q13.11) MUTATED                                                                        3
  DEL PEAK 40(19Q13.11) WILD-TYPE                                                                     32
D66V4, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 40(19Q13.11) MUTATED    0  7 10  2
  DEL PEAK 40(19Q13.11) WILD-TYPE  6 46 49 31
D66V5, multiclass
    clus
vv   DEL PEAK 40(19Q13.11) MUTATED DEL PEAK 40(19Q13.11) WILD-TYPE
  T1                             0                               6
  T2                             7                              46
  T3                            10                              49
  T4                             2                              31
                                 vv
clus                              N0 N1 N2 N3
  DEL PEAK 40(19Q13.11) MUTATED    6  5  3  5
  DEL PEAK 40(19Q13.11) WILD-TYPE 44 52 21 14
D66V6, multiclass
    clus
vv   DEL PEAK 40(19Q13.11) MUTATED DEL PEAK 40(19Q13.11) WILD-TYPE
  N0                             6                              44
  N1                             5                              52
  N2                             3                              21
  N3                             5                              14
                                 vv
clus                               M0  M1  MX
  DEL PEAK 40(19Q13.11) MUTATED    18   3   0
  DEL PEAK 40(19Q13.11) WILD-TYPE 114  15  11
D66V7, multiclass
    clus
vv   DEL PEAK 40(19Q13.11) MUTATED DEL PEAK 40(19Q13.11) WILD-TYPE
  M0                            18                             114
  M1                             3                              15
  MX                             0                              11
                                 vv
clus                               I II III IV
  DEL PEAK 40(19Q13.11) MUTATED    3  7   6  3
  DEL PEAK 40(19Q13.11) WILD-TYPE 22 36  42 26
D66V8, multiclass
     clus
vv    DEL PEAK 40(19Q13.11) MUTATED DEL PEAK 40(19Q13.11) WILD-TYPE
  I                               3                              22
  II                              7                              36
  III                             6                              42
  IV                              3                              26
D66V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 40(19Q13.11) MUTATED      1   20
  DEL PEAK 40(19Q13.11) WILD-TYPE    4  136
     clus
vv    DEL PEAK 40(19Q13.11) MUTATED DEL PEAK 40(19Q13.11) WILD-TYPE
  NO                              1                               4
  YES                            20                             136

Clustering(67) Variable = Del Peak 41(20p12.1) mutation analysis
D67V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 41(20P12.1) MUTATED   14  4
  DEL PEAK 41(20P12.1) WILD-TYPE 94 12
  DEL PEAK 41(20P12.1) MUTATED DEL PEAK 41(20P12.1) WILD-TYPE 
                            18                            106 
  DEL PEAK 41(20P12.1) MUTATED DEL PEAK 41(20P12.1) WILD-TYPE 
                             4                             12 
$`DEL PEAK 41(20P12.1) MUTATED`
TCGA-B7-5816 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-7723 TCGA-CD-5800 TCGA-CG-4301 
        5.62         0.82         0.62         4.54         0.36         3.02 
TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4441 TCGA-CG-4472 TCGA-CG-5717 TCGA-CG-5725 
        8.05        54.05        14.01        12.00         6.94        15.02 
TCGA-D7-6519 TCGA-D7-6526 TCGA-D7-6822 TCGA-EQ-5647 TCGA-FP-7735 TCGA-IP-7968 
       15.65         6.61         4.27         0.62         0.39         2.53 

$`DEL PEAK 41(20P12.1) WILD-TYPE`
TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 
        0.10         0.95         1.41         1.35         1.35         0.85 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 
        0.62         1.71         2.17         0.99         1.22         0.66 
TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 
        1.12         0.76         0.66         0.26         1.22         1.48 
TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7717 
        0.46         1.25         0.13         1.05         0.82         0.69 
TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         0.99         0.95         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 TCGA-CD-5802 
        1.48         0.76         0.82         0.69         0.49         0.30 
TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 
        0.07        20.02        27.02        15.95         1.02        52.96 
TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4455 TCGA-CG-4460 
        4.01        29.98        47.05        19.07        12.03        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4474 TCGA-CG-4477 
        1.02         8.98        18.94         7.07         1.02         1.02 
TCGA-CG-5716 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        1.02         1.02         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       70.06        12.03        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 
       55.04        21.07         7.99         8.65         3.58         4.54 
TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 
        9.80         9.63         8.19         6.90         0.69         5.95 
TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 
        4.14         1.68         3.65         4.70         4.04         2.93 
TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7829 TCGA-FP-7916 
        7.79         6.54         2.01        72.23         0.20         3.02 
TCGA-FP-7998 TCGA-HJ-7597 TCGA-IN-7806 TCGA-IN-7808 
        3.58        26.43         6.87         3.55 

  DEL PEAK 41(20P12.1) MUTATED DEL PEAK 41(20P12.1) WILD-TYPE 
                          0.36                           0.07 
  DEL PEAK 41(20P12.1) MUTATED DEL PEAK 41(20P12.1) WILD-TYPE 
                         54.05                          72.23 
  DEL PEAK 41(20P12.1) MUTATED DEL PEAK 41(20P12.1) WILD-TYPE 
                          5.08                           1.35 
[1] "0.4 - 54.0 (5.1)" "0.1 - 72.2 (1.4)"
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 41(20P12.1) MUTATED"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 41(20P12.1) MUTATED"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 41(20P12.1) MUTATED"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 41(20P12.1) MUTATED"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
  "DEL PEAK 41(20P12.1) MUTATED"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 41(20P12.1) MUTATED"   "DEL PEAK 41(20P12.1) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
  "DEL PEAK 41(20P12.1) MUTATED" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 41(20P12.1) WILD-TYPE" "DEL PEAK 41(20P12.1) WILD-TYPE" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 41(20P12.1) WILD-TYPE"   "DEL PEAK 41(20P12.1) MUTATED" 
[1] "hr=" "2"  
D67V2, continuous
D67V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 41(20P12.1) MUTATED     10   14
  DEL PEAK 41(20P12.1) WILD-TYPE   55   82
        clus
vv       DEL PEAK 41(20P12.1) MUTATED DEL PEAK 41(20P12.1) WILD-TYPE
  FEMALE                           10                             55
  MALE                             14                             82
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 41(20P12.1) MUTATED                                       2
  DEL PEAK 41(20P12.1) WILD-TYPE                                    17
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 41(20P12.1) MUTATED                                                       14
  DEL PEAK 41(20P12.1) WILD-TYPE                                                     65
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 41(20P12.1) MUTATED                                           0
  DEL PEAK 41(20P12.1) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 41(20P12.1) MUTATED                                                   1
  DEL PEAK 41(20P12.1) WILD-TYPE                                                 8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 41(20P12.1) MUTATED                                                    1
  DEL PEAK 41(20P12.1) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 41(20P12.1) MUTATED                                                  2
  DEL PEAK 41(20P12.1) WILD-TYPE                                                8
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 41(20P12.1) MUTATED                                                                        3
  DEL PEAK 41(20P12.1) WILD-TYPE                                                                     32
D67V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 41(20P12.1) MUTATED    0 10  7  5
  DEL PEAK 41(20P12.1) WILD-TYPE  6 43 52 28
D67V5, multiclass
    clus
vv   DEL PEAK 41(20P12.1) MUTATED DEL PEAK 41(20P12.1) WILD-TYPE
  T1                            0                              6
  T2                           10                             43
  T3                            7                             52
  T4                            5                             28
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 41(20P12.1) MUTATED    8  7  5  2
  DEL PEAK 41(20P12.1) WILD-TYPE 42 50 19 17
D67V6, multiclass
    clus
vv   DEL PEAK 41(20P12.1) MUTATED DEL PEAK 41(20P12.1) WILD-TYPE
  N0                            8                             42
  N1                            7                             50
  N2                            5                             19
  N3                            2                             17
                                vv
clus                              M0  M1  MX
  DEL PEAK 41(20P12.1) MUTATED    19   2   3
  DEL PEAK 41(20P12.1) WILD-TYPE 113  16   8
D67V7, multiclass
    clus
vv   DEL PEAK 41(20P12.1) MUTATED DEL PEAK 41(20P12.1) WILD-TYPE
  M0                           19                            113
  M1                            2                             16
  MX                            3                              8
                                vv
clus                              I II III IV
  DEL PEAK 41(20P12.1) MUTATED    5  6   6  5
  DEL PEAK 41(20P12.1) WILD-TYPE 20 37  42 24
D67V8, multiclass
     clus
vv    DEL PEAK 41(20P12.1) MUTATED DEL PEAK 41(20P12.1) WILD-TYPE
  I                              5                             20
  II                             6                             37
  III                            6                             42
  IV                             5                             24
D67V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 41(20P12.1) MUTATED      2   22
  DEL PEAK 41(20P12.1) WILD-TYPE    3  134
     clus
vv    DEL PEAK 41(20P12.1) MUTATED DEL PEAK 41(20P12.1) WILD-TYPE
  NO                             2                              3
  YES                           22                            134

Clustering(68) Variable = Del Peak 42(21q11.2) mutation analysis
D68V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 42(21Q11.2) MUTATED   31  7
  DEL PEAK 42(21Q11.2) WILD-TYPE 77  9
  DEL PEAK 42(21Q11.2) MUTATED DEL PEAK 42(21Q11.2) WILD-TYPE 
                            38                             86 
  DEL PEAK 42(21Q11.2) MUTATED DEL PEAK 42(21Q11.2) WILD-TYPE 
                             7                              9 
$`DEL PEAK 42(21Q11.2) MUTATED`
TCGA-B7-5818 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6803 
        0.10         1.35         1.35         0.82         0.62         0.66 
TCGA-BR-7704 TCGA-BR-7715 TCGA-BR-7716 TCGA-BR-7723 TCGA-CG-4300 TCGA-CG-4438 
        1.25         1.05         0.82         4.54        20.02        54.05 
TCGA-CG-4440 TCGA-CG-4444 TCGA-CG-4455 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4477 
        4.01        47.05        12.03        18.94         7.07         1.02 
TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5724 TCGA-CG-5728 TCGA-CG-5730 
        6.94         1.02         1.02        12.03        65.10         4.01 
TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6519 TCGA-D7-6526 TCGA-D7-6815 TCGA-D7-6817 
        4.54         9.80        15.65         6.61         3.65         4.70 
TCGA-D7-6820 TCGA-D7-6822 TCGA-EQ-5647 TCGA-F1-6875 TCGA-FP-7829 TCGA-HJ-7597 
        2.93         4.27         0.62        72.23         0.20        26.43 
TCGA-IN-7806 TCGA-IP-7968 
        6.87         2.53 

$`DEL PEAK 42(21Q11.2) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6563 TCGA-BR-6566 TCGA-BR-6705 
        5.62         0.95         1.41         0.85         0.62         1.71 
TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 
        2.17         0.99         1.22         0.66         1.12         0.76 
TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7707 TCGA-BR-7717 
        0.26         1.22         1.48         0.46         0.13         0.69 
TCGA-BR-7722 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 
        0.16         0.99         0.95         0.69         0.16         1.08 
TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 
        0.82         1.32         0.69         0.95         0.49         0.46 
TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 
        0.72         0.26         0.43         0.26         1.18         1.55 
TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 
        1.48         0.76         0.82         0.69         0.36         0.49 
TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 
        0.30         0.07         3.02        27.02        15.95         1.02 
TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4441 TCGA-CG-4443 TCGA-CG-4449 TCGA-CG-4460 
       52.96         8.05        14.01        29.98        19.07        21.99 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5720 
        1.02         8.98        12.00         1.02         1.02         0.99 
TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5725 TCGA-CG-5726 TCGA-CG-5727 
        5.98         0.95        70.06        15.02        28.96        31.04 
TCGA-CG-5732 TCGA-CG-5733 TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6520 
       55.04        21.07         7.99         8.65         3.58         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6527 TCGA-D7-6528 
        8.19         6.90         0.69         5.95         4.14         1.68 
TCGA-D7-6818 TCGA-EQ-8122 TCGA-F1-6177 TCGA-F1-6874 TCGA-FP-7735 TCGA-FP-7916 
        4.04         7.79         6.54         2.01         0.39         3.02 
TCGA-FP-7998 TCGA-IN-7808 
        3.58         3.55 

  DEL PEAK 42(21Q11.2) MUTATED DEL PEAK 42(21Q11.2) WILD-TYPE 
                          0.10                           0.07 
  DEL PEAK 42(21Q11.2) MUTATED DEL PEAK 42(21Q11.2) WILD-TYPE 
                         72.23                          70.06 
  DEL PEAK 42(21Q11.2) MUTATED DEL PEAK 42(21Q11.2) WILD-TYPE 
                          4.14                           1.22 
[1] "0.1 - 72.2 (4.1)" "0.1 - 70.1 (1.2)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6565                     TCGA-BR-6566 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4440                     TCGA-CG-4441 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5718                     TCGA-CG-5719 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
  "DEL PEAK 42(21Q11.2) MUTATED" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6518                     TCGA-D7-6519 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-D7-6815                     TCGA-D7-6817 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 42(21Q11.2) WILD-TYPE" "DEL PEAK 42(21Q11.2) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
  "DEL PEAK 42(21Q11.2) MUTATED"   "DEL PEAK 42(21Q11.2) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 42(21Q11.2) WILD-TYPE"   "DEL PEAK 42(21Q11.2) MUTATED" 
[1] "hr=" "1.1"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 42(21Q11.2) MUTATED     22   28
  DEL PEAK 42(21Q11.2) WILD-TYPE   43   68
        clus
vv       DEL PEAK 42(21Q11.2) MUTATED DEL PEAK 42(21Q11.2) WILD-TYPE
  FEMALE                           22                             43
  MALE                             28                             68
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 42(21Q11.2) MUTATED                                       7
  DEL PEAK 42(21Q11.2) WILD-TYPE                                    12
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 42(21Q11.2) MUTATED                                                       21
  DEL PEAK 42(21Q11.2) WILD-TYPE                                                     58
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 42(21Q11.2) MUTATED                                           1
  DEL PEAK 42(21Q11.2) WILD-TYPE                                         0
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 42(21Q11.2) MUTATED                                                   4
  DEL PEAK 42(21Q11.2) WILD-TYPE                                                 5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 42(21Q11.2) MUTATED                                                    0
  DEL PEAK 42(21Q11.2) WILD-TYPE                                                  3
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 42(21Q11.2) MUTATED                                                  5
  DEL PEAK 42(21Q11.2) WILD-TYPE                                                5
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 42(21Q11.2) MUTATED                                                                       10
  DEL PEAK 42(21Q11.2) WILD-TYPE                                                                     25
D68V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 42(21Q11.2) MUTATED    0 19 23  5
  DEL PEAK 42(21Q11.2) WILD-TYPE  6 34 36 28
D68V5, multiclass
    clus
vv   DEL PEAK 42(21Q11.2) MUTATED DEL PEAK 42(21Q11.2) WILD-TYPE
  T1                            0                              6
  T2                           19                             34
  T3                           23                             36
  T4                            5                             28
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 42(21Q11.2) MUTATED   14 17  8  8
  DEL PEAK 42(21Q11.2) WILD-TYPE 36 40 16 11
D68V6, multiclass
    clus
vv   DEL PEAK 42(21Q11.2) MUTATED DEL PEAK 42(21Q11.2) WILD-TYPE
  N0                           14                             36
  N1                           17                             40
  N2                            8                             16
  N3                            8                             11
                                vv
clus                             M0 M1 MX
  DEL PEAK 42(21Q11.2) MUTATED   40  5  5
  DEL PEAK 42(21Q11.2) WILD-TYPE 92 13  6
D68V7, multiclass
    clus
vv   DEL PEAK 42(21Q11.2) MUTATED DEL PEAK 42(21Q11.2) WILD-TYPE
  M0                           40                             92
  M1                            5                             13
  MX                            5                              6
                                vv
clus                              I II III IV
  DEL PEAK 42(21Q11.2) MUTATED    8 13  15 10
  DEL PEAK 42(21Q11.2) WILD-TYPE 17 30  33 19
D68V8, multiclass
     clus
vv    DEL PEAK 42(21Q11.2) MUTATED DEL PEAK 42(21Q11.2) WILD-TYPE
  I                              8                             17
  II                            13                             30
  III                           15                             33
  IV                            10                             19
D68V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 42(21Q11.2) MUTATED      2   48
  DEL PEAK 42(21Q11.2) WILD-TYPE    3  108
     clus
vv    DEL PEAK 42(21Q11.2) MUTATED DEL PEAK 42(21Q11.2) WILD-TYPE
  NO                             2                              3
  YES                           48                            108

Clustering(69) Variable = Del Peak 43(22q13.31) mutation analysis
D69V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 43(22Q13.31) MUTATED   29  7
  DEL PEAK 43(22Q13.31) WILD-TYPE 79  9
  DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE 
                             36                              88 
  DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE 
                              7                               9 
$`DEL PEAK 43(22Q13.31) MUTATED`
TCGA-BR-6458 TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6709 TCGA-BR-7197 TCGA-BR-7715 
        1.35         0.82         0.62         1.22         1.48         1.05 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CG-4301 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4440 
        0.69         0.36         3.02         8.05        54.05         4.01 
TCGA-CG-4441 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4466 TCGA-CG-4477 
       14.01        47.05        19.07        21.99        18.94         1.02 
TCGA-CG-5724 TCGA-CG-5725 TCGA-CG-5732 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6519 
       12.03        15.02        55.04         3.58         4.54        15.65 
TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6817 TCGA-D7-6820 
        5.95         6.61         4.14         1.68         4.70         2.93 
TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-FP-7829 TCGA-HJ-7597 TCGA-IP-7968 
        4.27         0.62         7.79         0.20        26.43         2.53 

$`DEL PEAK 43(22Q13.31) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 TCGA-BR-6710 TCGA-BR-6801 
        0.62         1.71         2.17         0.99         0.66         1.12 
TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 
        0.76         0.66         0.26         1.22         0.46         1.25 
TCGA-BR-7707 TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 
        0.13         0.82         0.69         0.16         4.54         0.99 
TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 
        0.95         0.69         0.16         1.08         0.82         1.32 
TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 
        0.69         0.95         0.49         0.46         0.72         0.26 
TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 
        0.43         0.26         1.18         1.55         1.48         0.76 
TCGA-CD-5798 TCGA-CD-5801 TCGA-CD-5802 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4304 
        0.82         0.49         0.30         0.07        20.02        27.02 
TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4443 TCGA-CG-4455 TCGA-CG-4462 
       15.95         1.02        52.96        29.98        12.03         1.02 
TCGA-CG-4465 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 
        8.98         7.07        12.00         1.02         1.02         6.94 
TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 
        1.02         1.02         0.99         5.98         0.95        70.06 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5733 TCGA-CG-5734 
       28.96        31.04        65.10         4.01        21.07         7.99 
TCGA-D7-5577 TCGA-D7-6518 TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 
        8.65         9.80         9.63         8.19         6.90         0.69 
TCGA-D7-6815 TCGA-D7-6818 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 
        3.65         4.04         6.54         2.01        72.23         0.39 
TCGA-FP-7916 TCGA-FP-7998 TCGA-IN-7806 TCGA-IN-7808 
        3.02         3.58         6.87         3.55 

  DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE 
                           0.20                            0.07 
  DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE 
                          55.04                           72.23 
  DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE 
                          4.205                           1.150 
[1] "0.2 - 55.0 (4.2)" "0.1 - 72.2 (1.1)"
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4304                      TCGA-CG-4305 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4443                      TCGA-CG-4444 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4304                      TCGA-CG-4305 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4443                      TCGA-CG-4444 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-B7-5816                      TCGA-B7-5818 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6452                      TCGA-BR-6455 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6457                      TCGA-BR-6458 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6563                      TCGA-BR-6564 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6565                      TCGA-BR-6566 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6705                      TCGA-BR-6706 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6707                      TCGA-BR-6709 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-BR-6710                      TCGA-BR-6801 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6802                      TCGA-BR-6803 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-6852                      TCGA-BR-7196 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7197                      TCGA-BR-7703 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7704                      TCGA-BR-7707 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7715                      TCGA-BR-7716 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7717                      TCGA-BR-7722 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7723                      TCGA-BR-7851 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7901                      TCGA-BR-7957 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-7958                      TCGA-BR-7959 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8059                      TCGA-BR-8060 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8077                      TCGA-BR-8078 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8080                      TCGA-BR-8081 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8284                      TCGA-BR-8285 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8286                      TCGA-BR-8289 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8291                      TCGA-BR-8295 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-BR-8296                      TCGA-BR-8297 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5798                      TCGA-CD-5799 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CD-5800                      TCGA-CD-5801 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CD-5802                      TCGA-CD-5803 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4300                      TCGA-CG-4301 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4304                      TCGA-CG-4305 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4306                      TCGA-CG-4436 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4437                      TCGA-CG-4438 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4440                      TCGA-CG-4441 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4443                      TCGA-CG-4444 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4449                      TCGA-CG-4455 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4460                      TCGA-CG-4462 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4465                      TCGA-CG-4466 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-4469                      TCGA-CG-4472 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-4474                      TCGA-CG-4477 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-5716                      TCGA-CG-5717 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5718                      TCGA-CG-5719 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5720                      TCGA-CG-5721 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5722                      TCGA-CG-5723 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5724                      TCGA-CG-5725 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-CG-5726                      TCGA-CG-5727 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5728                      TCGA-CG-5730 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5732                      TCGA-CG-5733 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-CG-5734                      TCGA-D7-5577 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-5578                      TCGA-D7-5579 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6518                      TCGA-D7-6519 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6520                      TCGA-D7-6521 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6522                      TCGA-D7-6524 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-D7-6525                      TCGA-D7-6526 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6527                      TCGA-D7-6528 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6815                      TCGA-D7-6817 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6818                      TCGA-D7-6820 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-D7-6822                      TCGA-EQ-5647 
  "DEL PEAK 43(22Q13.31) MUTATED"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-EQ-8122                      TCGA-F1-6177 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-F1-6874                      TCGA-F1-6875 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-FP-7735                      TCGA-FP-7829 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
                     TCGA-FP-7916                      TCGA-FP-7998 
"DEL PEAK 43(22Q13.31) WILD-TYPE" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-HJ-7597                      TCGA-IN-7806 
  "DEL PEAK 43(22Q13.31) MUTATED" "DEL PEAK 43(22Q13.31) WILD-TYPE" 
                     TCGA-IN-7808                      TCGA-IP-7968 
"DEL PEAK 43(22Q13.31) WILD-TYPE"   "DEL PEAK 43(22Q13.31) MUTATED" 
[1] "hr=" "1.4"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 43(22Q13.31) MUTATED     21   28
  DEL PEAK 43(22Q13.31) WILD-TYPE   44   68
        clus
vv       DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  FEMALE                            21                              44
  MALE                              28                              68
                                 vv
clus                              STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 43(22Q13.31) MUTATED                                       4
  DEL PEAK 43(22Q13.31) WILD-TYPE                                    15
                                 vv
clus                              STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 43(22Q13.31) MUTATED                                                       20
  DEL PEAK 43(22Q13.31) WILD-TYPE                                                     59
                                 vv
clus                              STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 43(22Q13.31) MUTATED                                           1
  DEL PEAK 43(22Q13.31) WILD-TYPE                                         0
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 43(22Q13.31) MUTATED                                                   4
  DEL PEAK 43(22Q13.31) WILD-TYPE                                                 5
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 43(22Q13.31) MUTATED                                                    2
  DEL PEAK 43(22Q13.31) WILD-TYPE                                                  1
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 43(22Q13.31) MUTATED                                                  7
  DEL PEAK 43(22Q13.31) WILD-TYPE                                                3
                                 vv
clus                              STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 43(22Q13.31) MUTATED                                                                       10
  DEL PEAK 43(22Q13.31) WILD-TYPE                                                                     25
D69V4, multiclass
                                 vv
clus                              T1 T2 T3 T4
  DEL PEAK 43(22Q13.31) MUTATED    0 21 19  5
  DEL PEAK 43(22Q13.31) WILD-TYPE  6 32 40 28
D69V5, multiclass
    clus
vv   DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  T1                             0                               6
  T2                            21                              32
  T3                            19                              40
  T4                             5                              28
                                 vv
clus                              N0 N1 N2 N3
  DEL PEAK 43(22Q13.31) MUTATED   12 18  9  7
  DEL PEAK 43(22Q13.31) WILD-TYPE 38 39 15 12
D69V6, multiclass
    clus
vv   DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  N0                            12                              38
  N1                            18                              39
  N2                             9                              15
  N3                             7                              12
                                 vv
clus                              M0 M1 MX
  DEL PEAK 43(22Q13.31) MUTATED   40  5  4
  DEL PEAK 43(22Q13.31) WILD-TYPE 92 13  7
D69V7, multiclass
    clus
vv   DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  M0                            40                              92
  M1                             5                              13
  MX                             4                               7
                                 vv
clus                               I II III IV
  DEL PEAK 43(22Q13.31) MUTATED    8 14  14  8
  DEL PEAK 43(22Q13.31) WILD-TYPE 17 29  34 21
D69V8, multiclass
     clus
vv    DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  I                               8                              17
  II                             14                              29
  III                            14                              34
  IV                              8                              21
D69V9, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 43(22Q13.31) MUTATED      3   46
  DEL PEAK 43(22Q13.31) WILD-TYPE    2  110
     clus
vv    DEL PEAK 43(22Q13.31) MUTATED DEL PEAK 43(22Q13.31) WILD-TYPE
  NO                              3                               2
  YES                            46                             110

Clustering(70) Variable = Del Peak 44(Xp22.2) mutation analysis
D70V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 44(XP22.2) MUTATED   19  5
  DEL PEAK 44(XP22.2) WILD-TYPE 89 11
  DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE 
                           24                           100 
  DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE 
                            5                            11 
$`DEL PEAK 44(XP22.2) MUTATED`
TCGA-BR-6458 TCGA-BR-7716 TCGA-CD-5799 TCGA-CD-5802 TCGA-CG-4438 TCGA-CG-4441 
        1.35         0.82         0.69         0.30        54.05        14.01 
TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4477 TCGA-CG-5718 TCGA-CG-5725 
       47.05        19.07        21.99         1.02         1.02        15.02 
TCGA-CG-5734 TCGA-D7-5579 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6528 TCGA-D7-6815 
        7.99         4.54         6.61         4.14         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-IN-7806 TCGA-IN-7808 
        4.70         4.27         0.62         7.79         6.87         3.55 

$`DEL PEAK 44(XP22.2) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 
        1.22         1.48         0.46         1.25         0.13         1.05 
TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 
        0.69         0.16         4.54         0.99         0.95         0.69 
TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 
        0.16         1.08         0.82         1.32         0.69         0.95 
TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 
        0.49         0.46         0.72         0.26         0.43         0.26 
TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5800 
        1.18         1.55         1.48         0.76         0.82         0.36 
TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 TCGA-CG-4304 TCGA-CG-4305 
        0.49         0.07        20.02         3.02        27.02        15.95 
TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4437 TCGA-CG-4440 TCGA-CG-4443 TCGA-CG-4455 
        1.02        52.96         8.05         4.01        29.98        12.03 
TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4469 TCGA-CG-4472 TCGA-CG-4474 
        1.02         8.98        18.94         7.07        12.00         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 
        1.02         6.94         1.02         0.99         5.98         0.95 
TCGA-CG-5723 TCGA-CG-5724 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
       70.06        12.03        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6518 TCGA-D7-6519 
       55.04        21.07         8.65         3.58         9.80        15.65 
TCGA-D7-6520 TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6818 
        9.63         8.19         6.90         0.69         5.95         4.04 
TCGA-D7-6820 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
        2.93         6.54         2.01        72.23         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IP-7968 
        3.02         3.58        26.43         2.53 

  DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE 
                         0.30                          0.07 
  DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE 
                        54.05                         72.23 
  DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE 
                        4.405                         1.285 
[1] "0.3 - 54.0 (4.4)" "0.1 - 72.2 (1.3)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4443                    TCGA-CG-4444 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6527                    TCGA-D7-6528 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 44(XP22.2) MUTATED"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 44(XP22.2) WILD-TYPE" "DEL PEAK 44(XP22.2) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 44(XP22.2) WILD-TYPE"   "DEL PEAK 44(XP22.2) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 44(XP22.2) MUTATED" "DEL PEAK 44(XP22.2) WILD-TYPE" 
[1] "hr=" "1.6"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 44(XP22.2) MUTATED     10   17
  DEL PEAK 44(XP22.2) WILD-TYPE   55   79
        clus
vv       DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  FEMALE                          10                            55
  MALE                            17                            79
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 44(XP22.2) MUTATED                                       2
  DEL PEAK 44(XP22.2) WILD-TYPE                                    17
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 44(XP22.2) MUTATED                                                        7
  DEL PEAK 44(XP22.2) WILD-TYPE                                                     72
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 44(XP22.2) MUTATED                                           0
  DEL PEAK 44(XP22.2) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 44(XP22.2) MUTATED                                                   2
  DEL PEAK 44(XP22.2) WILD-TYPE                                                 7
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 44(XP22.2) MUTATED                                                    1
  DEL PEAK 44(XP22.2) WILD-TYPE                                                  2
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 44(XP22.2) MUTATED                                                  6
  DEL PEAK 44(XP22.2) WILD-TYPE                                                4
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 44(XP22.2) MUTATED                                                                        8
  DEL PEAK 44(XP22.2) WILD-TYPE                                                                     27
D70V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 44(XP22.2) MUTATED    0 13  9  4
  DEL PEAK 44(XP22.2) WILD-TYPE  6 40 50 29
D70V5, multiclass
    clus
vv   DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  T1                           0                             6
  T2                          13                            40
  T3                           9                            50
  T4                           4                            29
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 44(XP22.2) MUTATED    6 11  6  3
  DEL PEAK 44(XP22.2) WILD-TYPE 44 46 18 16
D70V6, multiclass
    clus
vv   DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  N0                           6                            44
  N1                          11                            46
  N2                           6                            18
  N3                           3                            16
                               vv
clus                             M0  M1  MX
  DEL PEAK 44(XP22.2) MUTATED    23   3   1
  DEL PEAK 44(XP22.2) WILD-TYPE 109  15  10
D70V7, multiclass
    clus
vv   DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  M0                          23                           109
  M1                           3                            15
  MX                           1                            10
                               vv
clus                             I II III IV
  DEL PEAK 44(XP22.2) MUTATED    4  9   8  4
  DEL PEAK 44(XP22.2) WILD-TYPE 21 34  40 25
D70V8, multiclass
     clus
vv    DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  I                             4                            21
  II                            9                            34
  III                           8                            40
  IV                            4                            25
D70V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 44(XP22.2) MUTATED      1   26
  DEL PEAK 44(XP22.2) WILD-TYPE    4  130
     clus
vv    DEL PEAK 44(XP22.2) MUTATED DEL PEAK 44(XP22.2) WILD-TYPE
  NO                            1                             4
  YES                          26                           130

Clustering(71) Variable = Del Peak 45(Xp21.1) mutation analysis
D71V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 45(XP21.1) MUTATED   18  6
  DEL PEAK 45(XP21.1) WILD-TYPE 90 10
  DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE 
                           24                           100 
  DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE 
                            6                            10 
$`DEL PEAK 45(XP21.1) MUTATED`
TCGA-BR-6458 TCGA-CD-5802 TCGA-CG-4437 TCGA-CG-4438 TCGA-CG-4443 TCGA-CG-4444 
        1.35         0.30         8.05        54.05        29.98        47.05 
TCGA-CG-4449 TCGA-CG-4460 TCGA-CG-4469 TCGA-CG-4477 TCGA-CG-5724 TCGA-CG-5725 
       19.07        21.99         7.07         1.02        12.03        15.02 
TCGA-CG-5734 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6525 TCGA-D7-6528 TCGA-D7-6815 
        7.99         4.54         9.80         5.95         1.68         3.65 
TCGA-D7-6817 TCGA-D7-6822 TCGA-EQ-5647 TCGA-EQ-8122 TCGA-IN-7806 TCGA-IN-7808 
        4.70         4.27         0.62         7.79         6.87         3.55 

$`DEL PEAK 45(XP21.1) WILD-TYPE`
TCGA-B7-5816 TCGA-B7-5818 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6563 
        5.62         0.10         0.95         1.41         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7197 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 
        1.22         1.48         0.46         1.25         0.13         1.05 
TCGA-BR-7716 TCGA-BR-7717 TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 
        0.82         0.69         0.16         4.54         0.99         0.95 
TCGA-BR-7957 TCGA-BR-7958 TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 
        0.69         0.16         1.08         0.82         1.32         0.69 
TCGA-BR-8078 TCGA-BR-8080 TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 
        0.95         0.49         0.46         0.72         0.26         0.43 
TCGA-BR-8289 TCGA-BR-8291 TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 
        0.26         1.18         1.55         1.48         0.76         0.82 
TCGA-CD-5799 TCGA-CD-5800 TCGA-CD-5801 TCGA-CD-5803 TCGA-CG-4300 TCGA-CG-4301 
        0.69         0.36         0.49         0.07        20.02         3.02 
TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4436 TCGA-CG-4440 TCGA-CG-4441 
       27.02        15.95         1.02        52.96         4.01        14.01 
TCGA-CG-4455 TCGA-CG-4462 TCGA-CG-4465 TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 
       12.03         1.02         8.98        18.94        12.00         1.02 
TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 
        1.02         6.94         1.02         1.02         0.99         5.98 
TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 
        0.95        70.06        28.96        31.04        65.10         4.01 
TCGA-CG-5732 TCGA-CG-5733 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-6519 TCGA-D7-6520 
       55.04        21.07         8.65         3.58        15.65         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6526 TCGA-D7-6527 TCGA-D7-6818 
        8.19         6.90         0.69         6.61         4.14         4.04 
TCGA-D7-6820 TCGA-F1-6177 TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 
        2.93         6.54         2.01        72.23         0.39         0.20 
TCGA-FP-7916 TCGA-FP-7998 TCGA-HJ-7597 TCGA-IP-7968 
        3.02         3.58        26.43         2.53 

  DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE 
                         0.30                          0.07 
  DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE 
                        54.05                         72.23 
  DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE 
                         6.97                          1.20 
[1] "0.3 - 54.0 (7.0)" "0.1 - 72.2 (1.2)"
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-B7-5816                    TCGA-B7-5818 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6452                    TCGA-BR-6455 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6457                    TCGA-BR-6458 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-BR-6563                    TCGA-BR-6564 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6565                    TCGA-BR-6566 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6705                    TCGA-BR-6706 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6707                    TCGA-BR-6709 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6710                    TCGA-BR-6801 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6802                    TCGA-BR-6803 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-6852                    TCGA-BR-7196 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7197                    TCGA-BR-7703 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7704                    TCGA-BR-7707 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7715                    TCGA-BR-7716 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7717                    TCGA-BR-7722 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7723                    TCGA-BR-7851 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7901                    TCGA-BR-7957 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-7958                    TCGA-BR-7959 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8059                    TCGA-BR-8060 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8077                    TCGA-BR-8078 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8080                    TCGA-BR-8081 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8284                    TCGA-BR-8285 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8286                    TCGA-BR-8289 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8291                    TCGA-BR-8295 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-BR-8296                    TCGA-BR-8297 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5798                    TCGA-CD-5799 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5800                    TCGA-CD-5801 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CD-5802                    TCGA-CD-5803 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4300                    TCGA-CG-4301 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4304                    TCGA-CG-4305 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4306                    TCGA-CG-4436 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4437                    TCGA-CG-4438 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4440                    TCGA-CG-4441 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4443                    TCGA-CG-4444 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-4449                    TCGA-CG-4455 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4460                    TCGA-CG-4462 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4465                    TCGA-CG-4466 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4469                    TCGA-CG-4472 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-4474                    TCGA-CG-4477 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-5716                    TCGA-CG-5717 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5718                    TCGA-CG-5719 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5720                    TCGA-CG-5721 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5722                    TCGA-CG-5723 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5724                    TCGA-CG-5725 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-CG-5726                    TCGA-CG-5727 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5728                    TCGA-CG-5730 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5732                    TCGA-CG-5733 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-CG-5734                    TCGA-D7-5577 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-5578                    TCGA-D7-5579 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6518                    TCGA-D7-6519 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6520                    TCGA-D7-6521 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6522                    TCGA-D7-6524 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6525                    TCGA-D7-6526 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6527                    TCGA-D7-6528 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6815                    TCGA-D7-6817 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-D7-6818                    TCGA-D7-6820 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-D7-6822                    TCGA-EQ-5647 
  "DEL PEAK 45(XP21.1) MUTATED"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-EQ-8122                    TCGA-F1-6177 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-F1-6874                    TCGA-F1-6875 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7735                    TCGA-FP-7829 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-FP-7916                    TCGA-FP-7998 
"DEL PEAK 45(XP21.1) WILD-TYPE" "DEL PEAK 45(XP21.1) WILD-TYPE" 
                   TCGA-HJ-7597                    TCGA-IN-7806 
"DEL PEAK 45(XP21.1) WILD-TYPE"   "DEL PEAK 45(XP21.1) MUTATED" 
                   TCGA-IN-7808                    TCGA-IP-7968 
  "DEL PEAK 45(XP21.1) MUTATED" "DEL PEAK 45(XP21.1) WILD-TYPE" 
[1] "hr=" "1.6"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 45(XP21.1) MUTATED      7   20
  DEL PEAK 45(XP21.1) WILD-TYPE   58   76
        clus
vv       DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  FEMALE                           7                            58
  MALE                            20                            76
                               vv
clus                            STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 45(XP21.1) MUTATED                                       5
  DEL PEAK 45(XP21.1) WILD-TYPE                                    14
                               vv
clus                            STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 45(XP21.1) MUTATED                                                        6
  DEL PEAK 45(XP21.1) WILD-TYPE                                                     73
                               vv
clus                            STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 45(XP21.1) MUTATED                                           0
  DEL PEAK 45(XP21.1) WILD-TYPE                                         1
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 45(XP21.1) MUTATED                                                   2
  DEL PEAK 45(XP21.1) WILD-TYPE                                                 7
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 45(XP21.1) MUTATED                                                    0
  DEL PEAK 45(XP21.1) WILD-TYPE                                                  3
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 45(XP21.1) MUTATED                                                  5
  DEL PEAK 45(XP21.1) WILD-TYPE                                                5
                               vv
clus                            STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 45(XP21.1) MUTATED                                                                        8
  DEL PEAK 45(XP21.1) WILD-TYPE                                                                     27
D71V4, multiclass
                               vv
clus                            T1 T2 T3 T4
  DEL PEAK 45(XP21.1) MUTATED    1 12 10  3
  DEL PEAK 45(XP21.1) WILD-TYPE  5 41 49 30
D71V5, multiclass
    clus
vv   DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  T1                           1                             5
  T2                          12                            41
  T3                          10                            49
  T4                           3                            30
                               vv
clus                            N0 N1 N2 N3
  DEL PEAK 45(XP21.1) MUTATED    6  9  5  6
  DEL PEAK 45(XP21.1) WILD-TYPE 44 48 19 13
D71V6, multiclass
    clus
vv   DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  N0                           6                            44
  N1                           9                            48
  N2                           5                            19
  N3                           6                            13
                               vv
clus                             M0  M1  MX
  DEL PEAK 45(XP21.1) MUTATED    22   4   1
  DEL PEAK 45(XP21.1) WILD-TYPE 110  14  10
D71V7, multiclass
    clus
vv   DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  M0                          22                           110
  M1                           4                            14
  MX                           1                            10
                               vv
clus                             I II III IV
  DEL PEAK 45(XP21.1) MUTATED    5  6   8  6
  DEL PEAK 45(XP21.1) WILD-TYPE 20 37  40 23
D71V8, multiclass
     clus
vv    DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  I                             5                            20
  II                            6                            37
  III                           8                            40
  IV                            6                            23
D71V9, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 45(XP21.1) MUTATED      0   27
  DEL PEAK 45(XP21.1) WILD-TYPE    5  129
     clus
vv    DEL PEAK 45(XP21.1) MUTATED DEL PEAK 45(XP21.1) WILD-TYPE
  NO                            0                             5
  YES                          27                           129

Clustering(72) Variable = Del Peak 46(Xq21.33) mutation analysis
D72V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 46(XQ21.33) MUTATED   17  2
  DEL PEAK 46(XQ21.33) WILD-TYPE 91 14
  DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE 
                            19                            105 
  DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE 
                             2                             14 
$`DEL PEAK 46(XQ21.33) MUTATED`
TCGA-B7-5818 TCGA-BR-7197 TCGA-BR-7716 TCGA-CD-5800 TCGA-CD-5802 TCGA-CG-4300 
        0.10         1.48         0.82         0.36         0.30        20.02 
TCGA-CG-4301 TCGA-CG-4436 TCGA-CG-4443 TCGA-CG-4444 TCGA-CG-4449 TCGA-CG-4469 
        3.02        52.96        29.98        47.05        19.07         7.07 
TCGA-CG-4477 TCGA-CG-5725 TCGA-D7-6519 TCGA-D7-6528 TCGA-D7-6822 TCGA-EQ-8122 
        1.02        15.02        15.65         1.68         4.27         7.79 
TCGA-IN-7806 
        6.87 

$`DEL PEAK 46(XQ21.33) WILD-TYPE`
TCGA-B7-5816 TCGA-BR-6452 TCGA-BR-6455 TCGA-BR-6457 TCGA-BR-6458 TCGA-BR-6563 
        5.62         0.95         1.41         1.35         1.35         0.85 
TCGA-BR-6564 TCGA-BR-6565 TCGA-BR-6566 TCGA-BR-6705 TCGA-BR-6706 TCGA-BR-6707 
        0.82         0.62         0.62         1.71         2.17         0.99 
TCGA-BR-6709 TCGA-BR-6710 TCGA-BR-6801 TCGA-BR-6802 TCGA-BR-6803 TCGA-BR-6852 
        1.22         0.66         1.12         0.76         0.66         0.26 
TCGA-BR-7196 TCGA-BR-7703 TCGA-BR-7704 TCGA-BR-7707 TCGA-BR-7715 TCGA-BR-7717 
        1.22         0.46         1.25         0.13         1.05         0.69 
TCGA-BR-7722 TCGA-BR-7723 TCGA-BR-7851 TCGA-BR-7901 TCGA-BR-7957 TCGA-BR-7958 
        0.16         4.54         0.99         0.95         0.69         0.16 
TCGA-BR-7959 TCGA-BR-8059 TCGA-BR-8060 TCGA-BR-8077 TCGA-BR-8078 TCGA-BR-8080 
        1.08         0.82         1.32         0.69         0.95         0.49 
TCGA-BR-8081 TCGA-BR-8284 TCGA-BR-8285 TCGA-BR-8286 TCGA-BR-8289 TCGA-BR-8291 
        0.46         0.72         0.26         0.43         0.26         1.18 
TCGA-BR-8295 TCGA-BR-8296 TCGA-BR-8297 TCGA-CD-5798 TCGA-CD-5799 TCGA-CD-5801 
        1.55         1.48         0.76         0.82         0.69         0.49 
TCGA-CD-5803 TCGA-CG-4304 TCGA-CG-4305 TCGA-CG-4306 TCGA-CG-4437 TCGA-CG-4438 
        0.07        27.02        15.95         1.02         8.05        54.05 
TCGA-CG-4440 TCGA-CG-4441 TCGA-CG-4455 TCGA-CG-4460 TCGA-CG-4462 TCGA-CG-4465 
        4.01        14.01        12.03        21.99         1.02         8.98 
TCGA-CG-4466 TCGA-CG-4472 TCGA-CG-4474 TCGA-CG-5716 TCGA-CG-5717 TCGA-CG-5718 
       18.94        12.00         1.02         1.02         6.94         1.02 
TCGA-CG-5719 TCGA-CG-5720 TCGA-CG-5721 TCGA-CG-5722 TCGA-CG-5723 TCGA-CG-5724 
        1.02         0.99         5.98         0.95        70.06        12.03 
TCGA-CG-5726 TCGA-CG-5727 TCGA-CG-5728 TCGA-CG-5730 TCGA-CG-5732 TCGA-CG-5733 
       28.96        31.04        65.10         4.01        55.04        21.07 
TCGA-CG-5734 TCGA-D7-5577 TCGA-D7-5578 TCGA-D7-5579 TCGA-D7-6518 TCGA-D7-6520 
        7.99         8.65         3.58         4.54         9.80         9.63 
TCGA-D7-6521 TCGA-D7-6522 TCGA-D7-6524 TCGA-D7-6525 TCGA-D7-6526 TCGA-D7-6527 
        8.19         6.90         0.69         5.95         6.61         4.14 
TCGA-D7-6815 TCGA-D7-6817 TCGA-D7-6818 TCGA-D7-6820 TCGA-EQ-5647 TCGA-F1-6177 
        3.65         4.70         4.04         2.93         0.62         6.54 
TCGA-F1-6874 TCGA-F1-6875 TCGA-FP-7735 TCGA-FP-7829 TCGA-FP-7916 TCGA-FP-7998 
        2.01        72.23         0.39         0.20         3.02         3.58 
TCGA-HJ-7597 TCGA-IN-7808 TCGA-IP-7968 
       26.43         3.55         2.53 

  DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE 
                          0.10                           0.07 
  DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE 
                         52.96                          72.23 
  DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE 
                          6.87                           1.35 
[1] "0.1 - 53.0 (6.9)" "0.1 - 72.2 (1.4)"
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 46(XQ21.33) MUTATED"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 46(XQ21.33) MUTATED"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 46(XQ21.33) MUTATED"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 46(XQ21.33) MUTATED"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-B7-5816                     TCGA-B7-5818 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-BR-6452                     TCGA-BR-6455 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6457                     TCGA-BR-6458 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6563                     TCGA-BR-6564 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6565                     TCGA-BR-6566 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6705                     TCGA-BR-6706 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6707                     TCGA-BR-6709 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6710                     TCGA-BR-6801 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6802                     TCGA-BR-6803 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-6852                     TCGA-BR-7196 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7197                     TCGA-BR-7703 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7704                     TCGA-BR-7707 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7715                     TCGA-BR-7716 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-BR-7717                     TCGA-BR-7722 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7723                     TCGA-BR-7851 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7901                     TCGA-BR-7957 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-7958                     TCGA-BR-7959 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8059                     TCGA-BR-8060 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8077                     TCGA-BR-8078 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8080                     TCGA-BR-8081 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8284                     TCGA-BR-8285 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8286                     TCGA-BR-8289 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8291                     TCGA-BR-8295 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-BR-8296                     TCGA-BR-8297 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5798                     TCGA-CD-5799 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5800                     TCGA-CD-5801 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CD-5802                     TCGA-CD-5803 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4300                     TCGA-CG-4301 
  "DEL PEAK 46(XQ21.33) MUTATED"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4304                     TCGA-CG-4305 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4306                     TCGA-CG-4436 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4437                     TCGA-CG-4438 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4440                     TCGA-CG-4441 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4443                     TCGA-CG-4444 
  "DEL PEAK 46(XQ21.33) MUTATED"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-4449                     TCGA-CG-4455 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4460                     TCGA-CG-4462 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4465                     TCGA-CG-4466 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4469                     TCGA-CG-4472 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-4474                     TCGA-CG-4477 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-5716                     TCGA-CG-5717 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5718                     TCGA-CG-5719 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5720                     TCGA-CG-5721 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5722                     TCGA-CG-5723 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5724                     TCGA-CG-5725 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-CG-5726                     TCGA-CG-5727 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5728                     TCGA-CG-5730 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5732                     TCGA-CG-5733 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-CG-5734                     TCGA-D7-5577 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-5578                     TCGA-D7-5579 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6518                     TCGA-D7-6519 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-D7-6520                     TCGA-D7-6521 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6522                     TCGA-D7-6524 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6525                     TCGA-D7-6526 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6527                     TCGA-D7-6528 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-D7-6815                     TCGA-D7-6817 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6818                     TCGA-D7-6820 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-D7-6822                     TCGA-EQ-5647 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-EQ-8122                     TCGA-F1-6177 
  "DEL PEAK 46(XQ21.33) MUTATED" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-F1-6874                     TCGA-F1-6875 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7735                     TCGA-FP-7829 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-FP-7916                     TCGA-FP-7998 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
                    TCGA-HJ-7597                     TCGA-IN-7806 
"DEL PEAK 46(XQ21.33) WILD-TYPE"   "DEL PEAK 46(XQ21.33) MUTATED" 
                    TCGA-IN-7808                     TCGA-IP-7968 
"DEL PEAK 46(XQ21.33) WILD-TYPE" "DEL PEAK 46(XQ21.33) WILD-TYPE" 
[1] "hr=" "2.2"
D72V2, continuous
D72V3, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 46(XQ21.33) MUTATED      8   13
  DEL PEAK 46(XQ21.33) WILD-TYPE   57   83
        clus
vv       DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  FEMALE                            8                             57
  MALE                             13                             83
                                vv
clus                             STOMACH ADENOCARCINOMA - DIFFUSE TYPE
  DEL PEAK 46(XQ21.33) MUTATED                                       3
  DEL PEAK 46(XQ21.33) WILD-TYPE                                    16
                                vv
clus                             STOMACH ADENOCARCINOMA - NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 46(XQ21.33) MUTATED                                                        6
  DEL PEAK 46(XQ21.33) WILD-TYPE                                                     73
                                vv
clus                             STOMACH ADENOCARCINOMA - SIGNET RING TYPE
  DEL PEAK 46(XQ21.33) MUTATED                                           0
  DEL PEAK 46(XQ21.33) WILD-TYPE                                         1
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - MUCINOUS TYPE
  DEL PEAK 46(XQ21.33) MUTATED                                                   2
  DEL PEAK 46(XQ21.33) WILD-TYPE                                                 7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - PAPILLARY TYPE
  DEL PEAK 46(XQ21.33) MUTATED                                                    1
  DEL PEAK 46(XQ21.33) WILD-TYPE                                                  2
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TUBULAR TYPE
  DEL PEAK 46(XQ21.33) MUTATED                                                  3
  DEL PEAK 46(XQ21.33) WILD-TYPE                                                7
                                vv
clus                             STOMACH INTESTINAL ADENOCARCINOMA - TYPE NOT OTHERWISE SPECIFIED (NOS)
  DEL PEAK 46(XQ21.33) MUTATED                                                                        5
  DEL PEAK 46(XQ21.33) WILD-TYPE                                                                     30
D72V4, multiclass
                                vv
clus                             T1 T2 T3 T4
  DEL PEAK 46(XQ21.33) MUTATED    1 11  7  2
  DEL PEAK 46(XQ21.33) WILD-TYPE  5 42 52 31
D72V5, multiclass
    clus
vv   DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  T1                            1                              5
  T2                           11                             42
  T3                            7                             52
  T4                            2                             31
                                vv
clus                             N0 N1 N2 N3
  DEL PEAK 46(XQ21.33) MUTATED   10  6  2  2
  DEL PEAK 46(XQ21.33) WILD-TYPE 40 51 22 17
D72V6, multiclass
    clus
vv   DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  N0                           10                             40
  N1                            6                             51
  N2                            2                             22
  N3                            2                             17
                                vv
clus                              M0  M1  MX
  DEL PEAK 46(XQ21.33) MUTATED    19   1   1
  DEL PEAK 46(XQ21.33) WILD-TYPE 113  17  10
D72V7, multiclass
    clus
vv   DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  M0                           19                            113
  M1                            1                             17
  MX                            1                             10
                                vv
clus                              I II III IV
  DEL PEAK 46(XQ21.33) MUTATED    7  5   4  4
  DEL PEAK 46(XQ21.33) WILD-TYPE 18 38  44 25
D72V8, multiclass
     clus
vv    DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  I                              7                             18
  II                             5                             38
  III                            4                             44
  IV                             4                             25
D72V9, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 46(XQ21.33) MUTATED      1   20
  DEL PEAK 46(XQ21.33) WILD-TYPE    4  136
     clus
vv    DEL PEAK 46(XQ21.33) MUTATED DEL PEAK 46(XQ21.33) WILD-TYPE
  NO                             1                              4
  YES                           20                            136
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
                     "HISTOLOGICAL.TYPE" 
                                      V5 
                           "PATHOLOGY.T" 
                                      V6 
                           "PATHOLOGY.N" 
                                      V7 
                   "PATHOLOGICSPREAD(M)" 
                                      V8 
                           "TUMOR.STAGE" 
                                      V9 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
> q(save="no")
