		Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Del Peak  2(2p22.3)	11 (3%)	419	1.7873e-09	3.4e-07	8.2768e-05	0.014	0.77339	1	0.0079877	1	1.8887e-05	0.00338	1.9539e-05	0.00342	9.7651e-07	0.00018	3.1953e-07	5.94e-05
Del Peak  3(2q35)	11 (3%)	419	3.5639e-11	6.81e-09	3.3949e-05	0.00587	0.89495	1	0.0014532	0.224	1.8887e-05	0.00338	1.9539e-05	0.00342	9.7651e-07	0.00018	3.1953e-07	5.94e-05
Del Peak  5(6q22.31)	6 (1%)	424	0.00094255	0.151	0.0073549	0.978	0.037353	1	0.77586	1	0.017465	1	0.0093618	1	0.037989	1	0.022119	1
Del Peak  6(6q27)	6 (1%)	424	0.00094255	0.151	0.0073549	0.978	0.037353	1	0.77586	1	0.017465	1	0.0093618	1	0.037989	1	0.022119	1
Del Peak  8(7q34)	4 (1%)	426	0.65459	1	0.78133	1	NA	NA	NA	NA	0.74752	1	0.58925	1	0.68696	1	0.82269	1
Del Peak  9(8p12)	4 (1%)	426	3.7275e-05	0.00641	0.041929	1	NA	NA	NA	NA	0.037328	1	0.034754	1	0.0071188	0.956	0.0048044	0.677
Del Peak 10(8q24.22)	7 (2%)	423	8.0098e-05	0.0137	0.0025133	0.369	0.68311	1	0.039843	1	0.0021724	0.326	0.0012213	0.191	0.00016355	0.0275	8.141e-05	0.0138
Del Peak 11(9p21.3)	17 (4%)	413	1.8814e-12	3.63e-10	0.33433	1	0.44383	1	0.18935	1	0.11594	1	0.51471	1	0.0024596	0.364	0.002781	0.406
Del Peak 12(9q22.32)	22 (5%)	408	1.8581e-11	3.57e-09	0.49673	1	0.18142	1	0.0048687	0.682	0.24431	1	0.77358	1	0.032586	1	0.065322	1
Del Peak 13(10q21.2)	10 (2%)	420	0.0057782	0.803	0.039786	1	0.19516	1	1	1	0.051871	1	0.14843	1	0.37191	1	0.61014	1
Del Peak 14(10q23.31)	10 (2%)	420	0.00076215	0.124	0.051632	1	0.034907	1	0.069241	1	0.0041078	0.592	0.0011676	0.183	0.02567	1	0.012287	1
Del Peak 15(11p15.1)	5 (1%)	425	2.7125e-06	0.000494	0.056959	1	0.50445	1	1	1	0.04977	1	0.13239	1	0.037989	1	0.022119	1
Del Peak 16(13q12.3)	15 (3%)	415	0.0060837	0.833	0.0060265	0.832	0.38525	1	0.39731	1	0.0095554	1	0.045155	1	0.1936	1	0.1122	1
Del Peak 17(13q14.3)	18 (4%)	412	0.0015513	0.237	0.068221	1	0.098499	1	1	1	0.0099788	1	0.02509	1	0.072411	1	0.064294	1
Del Peak 18(15q25.3)	7 (2%)	423	0.0017966	0.273	0.033269	1	0.44383	1	0.038534	1	0.078186	1	0.067366	1	0.002864	0.415	0.0020381	0.308
Del Peak 20(16q23.3)	6 (1%)	424	0.05984	1	0.13571	1	0.44383	1	0.11381	1	0.12798	1	0.11201	1	0.25027	1	0.29264	1
Del Peak 21(17p13.1)	8 (2%)	422	0.0043354	0.619	0.88341	1	1	1	1	1	0.71092	1	0.64162	1	0.079583	1	0.30636	1
Del Peak 22(18p11.21)	4 (1%)	426	0.00034013	0.0565	0.17501	1	1	1	0.1817	1	0.24371	1	0.089531	1	0.072595	1	0.038284	1
Del Peak 23(19p13.2)	7 (2%)	423	0.014279	1	0.0010326	0.163	0.034907	1	0.11381	1	0.0021724	0.326	0.0012213	0.191	0.00057895	0.0949	0.00031925	0.0533
Del Peak 26(21q21.1)	8 (2%)	422	3.111e-06	0.000563	0.39635	1	0.14987	1	0.07399	1	0.28971	1	0.46017	1	0.084672	1	0.083967	1
Del Peak 27(22q13.31)	74 (17%)	356	2.4545e-77	4.81e-75	0.000881	0.143	0.24122	1	0.092477	1	3.04e-07	5.72e-05	1.9146e-05	0.00339	0.01182	1	0.01203	1
Del Peak 28(22q13.2)	74 (17%)	356	2.4545e-77	4.81e-75	0.000881	0.143	0.24122	1	0.092477	1	3.04e-07	5.72e-05	1.9146e-05	0.00339	0.01182	1	0.01203	1
Del Peak 29(22q13.32)	75 (17%)	355	1.7199e-75	3.34e-73	0.00046651	0.077	0.24122	1	0.092477	1	1.6177e-07	3.06e-05	1.0613e-05	0.00191	0.0070785	0.956	0.0065776	0.895
Del Peak 30(Xq22.1)	6 (1%)	424	0.015048	1	0.39562	1	0.10223	1	0.14564	1	0.6717	1	0.86083	1	0.45239	1	0.38625	1
Del Peak 31(Xq22.3)	4 (1%)	426	0.0043291	0.619	0.041929	1	0.28556	1	0.34786	1	0.12981	1	0.40064	1	0.072595	1	0.038284	1
