
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/335713/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/THCA-TP/2667405/1.GDAC_mergedClustering.Finished/THCA-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=THCA-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=THCA-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=435, in cluster file=430, common to both=430
[1] "Reduce the number of clustering variables from 31 to 25."
[1]  25 430
[1] "Del Peak  2(2p22.3) mutation analysis"
[1] 3
  DEL PEAK  2(2P22.3) MUTATED DEL PEAK  2(2P22.3) WILD-TYPE 
                           11                           419 
  DEL PEAK  2(2P22.3) MUTATED DEL PEAK  2(2P22.3) WILD-TYPE 
                           11                           419 
[1] "Del Peak  3(2q35) mutation analysis"
[1] 3
  DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE 
                         11                         419 
  DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE 
                         11                         419 
[1] "Del Peak  5(6q22.31) mutation analysis"
[1] 3
  DEL PEAK  5(6Q22.31) MUTATED DEL PEAK  5(6Q22.31) WILD-TYPE 
                             6                            424 
  DEL PEAK  5(6Q22.31) MUTATED DEL PEAK  5(6Q22.31) WILD-TYPE 
                             6                            424 
[1] "Del Peak  6(6q27) mutation analysis"
[1] 3
  DEL PEAK  6(6Q27) MUTATED DEL PEAK  6(6Q27) WILD-TYPE 
                          6                         424 
  DEL PEAK  6(6Q27) MUTATED DEL PEAK  6(6Q27) WILD-TYPE 
                          6                         424 
[1] "Del Peak  8(7q34) mutation analysis"
[1] 3
  DEL PEAK  8(7Q34) MUTATED DEL PEAK  8(7Q34) WILD-TYPE 
                          4                         426 
  DEL PEAK  8(7Q34) MUTATED DEL PEAK  8(7Q34) WILD-TYPE 
                          4                         426 
[1] "Del Peak  9(8p12) mutation analysis"
[1] 3
  DEL PEAK  9(8P12) MUTATED DEL PEAK  9(8P12) WILD-TYPE 
                          4                         426 
  DEL PEAK  9(8P12) MUTATED DEL PEAK  9(8P12) WILD-TYPE 
                          4                         426 
[1] "Del Peak 10(8q24.22) mutation analysis"
[1] 3
  DEL PEAK 10(8Q24.22) MUTATED DEL PEAK 10(8Q24.22) WILD-TYPE 
                             7                            423 
  DEL PEAK 10(8Q24.22) MUTATED DEL PEAK 10(8Q24.22) WILD-TYPE 
                             7                            423 
[1] "Del Peak 11(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           17                           413 
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           17                           413 
[1] "Del Peak 12(9q22.32) mutation analysis"
[1] 3
  DEL PEAK 12(9Q22.32) MUTATED DEL PEAK 12(9Q22.32) WILD-TYPE 
                            22                            408 
  DEL PEAK 12(9Q22.32) MUTATED DEL PEAK 12(9Q22.32) WILD-TYPE 
                            22                            408 
[1] "Del Peak 13(10q21.2) mutation analysis"
[1] 3
  DEL PEAK 13(10Q21.2) MUTATED DEL PEAK 13(10Q21.2) WILD-TYPE 
                            10                            420 
  DEL PEAK 13(10Q21.2) MUTATED DEL PEAK 13(10Q21.2) WILD-TYPE 
                            10                            420 
[1] "Del Peak 14(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE 
                             10                             420 
  DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE 
                             10                             420 
[1] "Del Peak 15(11p15.1) mutation analysis"
[1] 3
  DEL PEAK 15(11P15.1) MUTATED DEL PEAK 15(11P15.1) WILD-TYPE 
                             5                            425 
  DEL PEAK 15(11P15.1) MUTATED DEL PEAK 15(11P15.1) WILD-TYPE 
                             5                            425 
[1] "Del Peak 16(13q12.3) mutation analysis"
[1] 3
  DEL PEAK 16(13Q12.3) MUTATED DEL PEAK 16(13Q12.3) WILD-TYPE 
                            15                            415 
  DEL PEAK 16(13Q12.3) MUTATED DEL PEAK 16(13Q12.3) WILD-TYPE 
                            15                            415 
[1] "Del Peak 17(13q14.3) mutation analysis"
[1] 3
  DEL PEAK 17(13Q14.3) MUTATED DEL PEAK 17(13Q14.3) WILD-TYPE 
                            18                            412 
  DEL PEAK 17(13Q14.3) MUTATED DEL PEAK 17(13Q14.3) WILD-TYPE 
                            18                            412 
[1] "Del Peak 18(15q25.3) mutation analysis"
[1] 3
  DEL PEAK 18(15Q25.3) MUTATED DEL PEAK 18(15Q25.3) WILD-TYPE 
                             7                            423 
  DEL PEAK 18(15Q25.3) MUTATED DEL PEAK 18(15Q25.3) WILD-TYPE 
                             7                            423 
[1] "Del Peak 20(16q23.3) mutation analysis"
[1] 3
  DEL PEAK 20(16Q23.3) MUTATED DEL PEAK 20(16Q23.3) WILD-TYPE 
                             6                            424 
  DEL PEAK 20(16Q23.3) MUTATED DEL PEAK 20(16Q23.3) WILD-TYPE 
                             6                            424 
[1] "Del Peak 21(17p13.1) mutation analysis"
[1] 3
  DEL PEAK 21(17P13.1) MUTATED DEL PEAK 21(17P13.1) WILD-TYPE 
                             8                            422 
  DEL PEAK 21(17P13.1) MUTATED DEL PEAK 21(17P13.1) WILD-TYPE 
                             8                            422 
[1] "Del Peak 22(18p11.21) mutation analysis"
[1] 3
  DEL PEAK 22(18P11.21) MUTATED DEL PEAK 22(18P11.21) WILD-TYPE 
                              4                             426 
  DEL PEAK 22(18P11.21) MUTATED DEL PEAK 22(18P11.21) WILD-TYPE 
                              4                             426 
[1] "Del Peak 23(19p13.2) mutation analysis"
[1] 3
  DEL PEAK 23(19P13.2) MUTATED DEL PEAK 23(19P13.2) WILD-TYPE 
                             7                            423 
  DEL PEAK 23(19P13.2) MUTATED DEL PEAK 23(19P13.2) WILD-TYPE 
                             7                            423 
[1] "Del Peak 26(21q21.1) mutation analysis"
[1] 3
  DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE 
                             8                            422 
  DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE 
                             8                            422 
[1] "Del Peak 27(22q13.31) mutation analysis"
[1] 3
  DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE 
                             74                             356 
  DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE 
                             74                             356 
[1] "Del Peak 28(22q13.2) mutation analysis"
[1] 3
  DEL PEAK 28(22Q13.2) MUTATED DEL PEAK 28(22Q13.2) WILD-TYPE 
                            74                            356 
  DEL PEAK 28(22Q13.2) MUTATED DEL PEAK 28(22Q13.2) WILD-TYPE 
                            74                            356 
[1] "Del Peak 29(22q13.32) mutation analysis"
[1] 3
  DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE 
                             75                             355 
  DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE 
                             75                             355 
[1] "Del Peak 30(Xq22.1) mutation analysis"
[1] 3
  DEL PEAK 30(XQ22.1) MUTATED DEL PEAK 30(XQ22.1) WILD-TYPE 
                            6                           424 
  DEL PEAK 30(XQ22.1) MUTATED DEL PEAK 30(XQ22.1) WILD-TYPE 
                            6                           424 
[1] "Del Peak 31(Xq22.3) mutation analysis"
[1] 3
  DEL PEAK 31(XQ22.3) MUTATED DEL PEAK 31(XQ22.3) WILD-TYPE 
                            4                           426 
  DEL PEAK 31(XQ22.3) MUTATED DEL PEAK 31(XQ22.3) WILD-TYPE 
                            4                           426 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "RPPA_CNMF"            
[4] "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL"
[7] "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 

Input Data has 8 rows and 430 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "RPPA_CNMF"            
[4] "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL"
[7] "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 430 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Del Peak  2(2p22.3) mutation analysis
D1V1, multiclass
        clus
vv       DEL PEAK  2(2P22.3) MUTATED DEL PEAK  2(2P22.3) WILD-TYPE
  CLUS_1                           9                            26
  CLUS_2                           1                           329
  CLUS_3                           1                            64
D1V2, multiclass
        clus
vv       DEL PEAK  2(2P22.3) MUTATED DEL PEAK  2(2P22.3) WILD-TYPE
  CLUS_1                           9                           126
  CLUS_2                           2                            53
  CLUS_3                           0                           240
D1V3, multiclass
        clus
vv       DEL PEAK  2(2P22.3) MUTATED DEL PEAK  2(2P22.3) WILD-TYPE
  CLUS_1                           1                            62
  CLUS_2                           3                            74
  CLUS_3                           2                            79
D1V4, multiclass
        clus
vv       DEL PEAK  2(2P22.3) MUTATED DEL PEAK  2(2P22.3) WILD-TYPE
  CLUS_1                           3                            24
  CLUS_2                           0                            97
  CLUS_3                           3                            94
D1V5, multiclass
        clus
vv       DEL PEAK  2(2P22.3) MUTATED DEL PEAK  2(2P22.3) WILD-TYPE
  CLUS_1                          11                           118
  CLUS_2                           0                            50
  CLUS_3                           0                            89
  CLUS_4                           0                           137
D1V6, multiclass
        clus
vv       DEL PEAK  2(2P22.3) MUTATED DEL PEAK  2(2P22.3) WILD-TYPE
  CLUS_1                          11                           130
  CLUS_2                           0                           190
  CLUS_3                           0                            74
D1V7, multiclass
        clus
vv       DEL PEAK  2(2P22.3) MUTATED DEL PEAK  2(2P22.3) WILD-TYPE
  CLUS_1                          11                           108
  CLUS_2                           0                           143
  CLUS_3                           0                           144
D1V8, multiclass
        clus
vv       DEL PEAK  2(2P22.3) MUTATED DEL PEAK  2(2P22.3) WILD-TYPE
  CLUS_1                          11                            97
  CLUS_2                           0                           169
  CLUS_3                           0                           129

Clustering(2) Variable = Del Peak  3(2q35) mutation analysis
D2V1, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                        10                          25
  CLUS_2                         1                         329
  CLUS_3                         0                          65
D2V2, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                        10                         125
  CLUS_2                         1                          54
  CLUS_3                         0                         240
D2V3, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         2                          61
  CLUS_2                         3                          74
  CLUS_3                         2                          79
D2V4, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                         4                          23
  CLUS_2                         0                          97
  CLUS_3                         3                          94
D2V5, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                        11                         118
  CLUS_2                         0                          50
  CLUS_3                         0                          89
  CLUS_4                         0                         137
D2V6, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                        11                         130
  CLUS_2                         0                         190
  CLUS_3                         0                          74
D2V7, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                        11                         108
  CLUS_2                         0                         143
  CLUS_3                         0                         144
D2V8, multiclass
        clus
vv       DEL PEAK  3(2Q35) MUTATED DEL PEAK  3(2Q35) WILD-TYPE
  CLUS_1                        11                          97
  CLUS_2                         0                         169
  CLUS_3                         0                         129

Clustering(3) Variable = Del Peak  5(6q22.31) mutation analysis
D3V1, multiclass
        clus
vv       DEL PEAK  5(6Q22.31) MUTATED DEL PEAK  5(6Q22.31) WILD-TYPE
  CLUS_1                            4                             31
  CLUS_2                            2                            328
  CLUS_3                            0                             65
D3V2, multiclass
        clus
vv       DEL PEAK  5(6Q22.31) MUTATED DEL PEAK  5(6Q22.31) WILD-TYPE
  CLUS_1                            5                            130
  CLUS_2                            1                             54
  CLUS_3                            0                            240
D3V3, multiclass
        clus
vv       DEL PEAK  5(6Q22.31) MUTATED DEL PEAK  5(6Q22.31) WILD-TYPE
  CLUS_1                            0                             63
  CLUS_2                            0                             77
  CLUS_3                            4                             77
D3V4, multiclass
        clus
vv       DEL PEAK  5(6Q22.31) MUTATED DEL PEAK  5(6Q22.31) WILD-TYPE
  CLUS_1                            0                             27
  CLUS_2                            1                             96
  CLUS_3                            3                             94
D3V5, multiclass
        clus
vv       DEL PEAK  5(6Q22.31) MUTATED DEL PEAK  5(6Q22.31) WILD-TYPE
  CLUS_1                            5                            124
  CLUS_2                            0                             50
  CLUS_3                            0                             89
  CLUS_4                            0                            137
D3V6, multiclass
        clus
vv       DEL PEAK  5(6Q22.31) MUTATED DEL PEAK  5(6Q22.31) WILD-TYPE
  CLUS_1                            5                            136
  CLUS_2                            0                            190
  CLUS_3                            0                             74
D3V7, multiclass
        clus
vv       DEL PEAK  5(6Q22.31) MUTATED DEL PEAK  5(6Q22.31) WILD-TYPE
  CLUS_1                            4                            115
  CLUS_2                            0                            143
  CLUS_3                            1                            143
D3V8, multiclass
        clus
vv       DEL PEAK  5(6Q22.31) MUTATED DEL PEAK  5(6Q22.31) WILD-TYPE
  CLUS_1                            4                            104
  CLUS_2                            1                            168
  CLUS_3                            0                            129

Clustering(4) Variable = Del Peak  6(6q27) mutation analysis
D4V1, multiclass
        clus
vv       DEL PEAK  6(6Q27) MUTATED DEL PEAK  6(6Q27) WILD-TYPE
  CLUS_1                         4                          31
  CLUS_2                         2                         328
  CLUS_3                         0                          65
D4V2, multiclass
        clus
vv       DEL PEAK  6(6Q27) MUTATED DEL PEAK  6(6Q27) WILD-TYPE
  CLUS_1                         5                         130
  CLUS_2                         1                          54
  CLUS_3                         0                         240
D4V3, multiclass
        clus
vv       DEL PEAK  6(6Q27) MUTATED DEL PEAK  6(6Q27) WILD-TYPE
  CLUS_1                         0                          63
  CLUS_2                         0                          77
  CLUS_3                         4                          77
D4V4, multiclass
        clus
vv       DEL PEAK  6(6Q27) MUTATED DEL PEAK  6(6Q27) WILD-TYPE
  CLUS_1                         0                          27
  CLUS_2                         1                          96
  CLUS_3                         3                          94
D4V5, multiclass
        clus
vv       DEL PEAK  6(6Q27) MUTATED DEL PEAK  6(6Q27) WILD-TYPE
  CLUS_1                         5                         124
  CLUS_2                         0                          50
  CLUS_3                         0                          89
  CLUS_4                         0                         137
D4V6, multiclass
        clus
vv       DEL PEAK  6(6Q27) MUTATED DEL PEAK  6(6Q27) WILD-TYPE
  CLUS_1                         5                         136
  CLUS_2                         0                         190
  CLUS_3                         0                          74
D4V7, multiclass
        clus
vv       DEL PEAK  6(6Q27) MUTATED DEL PEAK  6(6Q27) WILD-TYPE
  CLUS_1                         4                         115
  CLUS_2                         0                         143
  CLUS_3                         1                         143
D4V8, multiclass
        clus
vv       DEL PEAK  6(6Q27) MUTATED DEL PEAK  6(6Q27) WILD-TYPE
  CLUS_1                         4                         104
  CLUS_2                         1                         168
  CLUS_3                         0                         129

Clustering(5) Variable = Del Peak  8(7q34) mutation analysis
D5V1, multiclass
        clus
vv       DEL PEAK  8(7Q34) MUTATED DEL PEAK  8(7Q34) WILD-TYPE
  CLUS_1                         0                          35
  CLUS_2                         3                         327
  CLUS_3                         1                          64
D5V2, multiclass
        clus
vv       DEL PEAK  8(7Q34) MUTATED DEL PEAK  8(7Q34) WILD-TYPE
  CLUS_1                         2                         133
  CLUS_2                         0                          55
  CLUS_3                         2                         238
D5V3, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  8(7Q34) MUTATED"
clus
  DEL PEAK  8(7Q34) MUTATED DEL PEAK  8(7Q34) WILD-TYPE 
                          1                         220 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A190                  TCGA-BJ-A191 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A192                  TCGA-BJ-A28R 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28S                  TCGA-BJ-A28T 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28V                  TCGA-BJ-A28W 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28Z                  TCGA-BJ-A290 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A291                  TCGA-BJ-A2N7 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A2N9                  TCGA-BJ-A2NA 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A2P4                  TCGA-BJ-A3EZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A3F0                  TCGA-CE-A13K 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-CE-A27D                  TCGA-CE-A3MD 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-CE-A3ME                  TCGA-DE-A0Y2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DE-A2OL                  TCGA-DE-A3KN 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13M                  TCGA-DJ-A13O 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13R                  TCGA-DJ-A13S 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13V                  TCGA-DJ-A13W 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13X                  TCGA-DJ-A1QD 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QE                  TCGA-DJ-A1QF 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QG                  TCGA-DJ-A1QI 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QL                  TCGA-DJ-A1QM 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QN                  TCGA-DJ-A1QO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PN                  TCGA-DJ-A2PO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PP                  TCGA-DJ-A2PQ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PR                  TCGA-DJ-A2PS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PU                  TCGA-DJ-A2PV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PW                  TCGA-DJ-A2PY 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PZ                  TCGA-DJ-A2Q0 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q9                  TCGA-DJ-A2QA 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2QB                  TCGA-DJ-A2QC 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DO-A1JZ                  TCGA-DO-A1K0 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E3-A3DY                  TCGA-E3-A3DZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E3-A3E0                  TCGA-E3-A3E1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E3-A3E3                  TCGA-E3-A3E5 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E8-A2EA                  TCGA-E8-A2JQ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CL                  TCGA-EL-A3CM 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CN                  TCGA-EL-A3CO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CP                  TCGA-EL-A3CR 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CS                  TCGA-EL-A3CT 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CU                  TCGA-EL-A3CV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CW                  TCGA-EL-A3CX 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CY                  TCGA-EL-A3CZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D0                  TCGA-EL-A3D1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D4                  TCGA-EL-A3D5 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D6                  TCGA-EL-A3GO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GP                  TCGA-EL-A3GQ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GR                  TCGA-EL-A3GS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GU                  TCGA-EL-A3GV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GW                  TCGA-EL-A3GX 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GY                  TCGA-EL-A3GZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H1                  TCGA-EL-A3H2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H3                  TCGA-EL-A3H4 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H5                  TCGA-EL-A3H7 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H8                  TCGA-EL-A3MW 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3MX                  TCGA-EL-A3MY 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3MZ                  TCGA-EL-A3N2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3N3                  TCGA-EM-A1CT 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1CU                  TCGA-EM-A1CV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1CW                  TCGA-EM-A1YA 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YB                  TCGA-EM-A1YC 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YD                  TCGA-EM-A1YE 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A22I                  TCGA-EM-A22J 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A22L                  TCGA-EM-A22M 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A22O                  TCGA-EM-A22Q 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CJ                  TCGA-EM-A2CK 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CL                  TCGA-EM-A2CM 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CN                  TCGA-EM-A2CO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CP                  TCGA-EM-A2CQ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CS                  TCGA-EM-A2CU 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2OV                  TCGA-EM-A2OY 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2P1                  TCGA-EM-A3AI 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AJ                  TCGA-EM-A3AL 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AN                  TCGA-EM-A3AO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AP                  TCGA-EM-A3FJ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FL                  TCGA-EM-A3FN 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FO                  TCGA-EM-A3FP 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A25G                  TCGA-ET-A25L 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A25M                  TCGA-ET-A25O 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A2MY                  TCGA-ET-A2MZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A2N0                  TCGA-ET-A2N1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A2N4                  TCGA-ET-A2N5 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39I                  TCGA-ET-A39J 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39L                  TCGA-ET-A39M 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39N                  TCGA-ET-A39P 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39R                  TCGA-ET-A39T 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BN                  TCGA-ET-A3BP 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BS                  TCGA-ET-A3BT 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BU                  TCGA-ET-A3BV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BW                  TCGA-ET-A3BX 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DO                  TCGA-ET-A3DP 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DS                  TCGA-ET-A3DT 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DV                  TCGA-ET-A3DW 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A22Z                  TCGA-FE-A230 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A231                  TCGA-FE-A232 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A233                  TCGA-FE-A234 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A235                  TCGA-FE-A236 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A237                  TCGA-FE-A239 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A23A                  TCGA-FY-A2QD 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FY-A3BL                  TCGA-GE-A2C6 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-H2-A2K9                  TCGA-IM-A3EB 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-IM-A3ED                  TCGA-J8-A3NZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-J8-A3O0                  TCGA-J8-A3O1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
D5V4, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  8(7Q34) MUTATED"
clus
  DEL PEAK  8(7Q34) MUTATED DEL PEAK  8(7Q34) WILD-TYPE 
                          1                         220 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A190                  TCGA-BJ-A191 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A192                  TCGA-BJ-A28R 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28S                  TCGA-BJ-A28T 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28V                  TCGA-BJ-A28W 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A28Z                  TCGA-BJ-A290 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A291                  TCGA-BJ-A2N7 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A2N9                  TCGA-BJ-A2NA 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A2P4                  TCGA-BJ-A3EZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-BJ-A3F0                  TCGA-CE-A13K 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-CE-A27D                  TCGA-CE-A3MD 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-CE-A3ME                  TCGA-DE-A0Y2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DE-A2OL                  TCGA-DE-A3KN 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13M                  TCGA-DJ-A13O 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13R                  TCGA-DJ-A13S 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13V                  TCGA-DJ-A13W 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A13X                  TCGA-DJ-A1QD 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QE                  TCGA-DJ-A1QF 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QG                  TCGA-DJ-A1QI 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QL                  TCGA-DJ-A1QM 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A1QN                  TCGA-DJ-A1QO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PN                  TCGA-DJ-A2PO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PP                  TCGA-DJ-A2PQ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PR                  TCGA-DJ-A2PS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PU                  TCGA-DJ-A2PV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PW                  TCGA-DJ-A2PY 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2PZ                  TCGA-DJ-A2Q0 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2Q9                  TCGA-DJ-A2QA 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DJ-A2QB                  TCGA-DJ-A2QC 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-DO-A1JZ                  TCGA-DO-A1K0 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E3-A3DY                  TCGA-E3-A3DZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E3-A3E0                  TCGA-E3-A3E1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E3-A3E3                  TCGA-E3-A3E5 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-E8-A2EA                  TCGA-E8-A2JQ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CL                  TCGA-EL-A3CM 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CN                  TCGA-EL-A3CO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CP                  TCGA-EL-A3CR 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CS                  TCGA-EL-A3CT 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CU                  TCGA-EL-A3CV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CW                  TCGA-EL-A3CX 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3CY                  TCGA-EL-A3CZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D0                  TCGA-EL-A3D1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D4                  TCGA-EL-A3D5 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3D6                  TCGA-EL-A3GO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GP                  TCGA-EL-A3GQ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GR                  TCGA-EL-A3GS 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GU                  TCGA-EL-A3GV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GW                  TCGA-EL-A3GX 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3GY                  TCGA-EL-A3GZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H1                  TCGA-EL-A3H2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H3                  TCGA-EL-A3H4 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H5                  TCGA-EL-A3H7 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3H8                  TCGA-EL-A3MW 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3MX                  TCGA-EL-A3MY 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3MZ                  TCGA-EL-A3N2 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EL-A3N3                  TCGA-EM-A1CT 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1CU                  TCGA-EM-A1CV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1CW                  TCGA-EM-A1YA 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YB                  TCGA-EM-A1YC 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A1YD                  TCGA-EM-A1YE 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A22I                  TCGA-EM-A22J 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A22L                  TCGA-EM-A22M 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A22O                  TCGA-EM-A22Q 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CJ                  TCGA-EM-A2CK 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CL                  TCGA-EM-A2CM 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CN                  TCGA-EM-A2CO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CP                  TCGA-EM-A2CQ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2CS                  TCGA-EM-A2CU 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2OV                  TCGA-EM-A2OY 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A2P1                  TCGA-EM-A3AI 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AJ                  TCGA-EM-A3AL 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AN                  TCGA-EM-A3AO 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3AP                  TCGA-EM-A3FJ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FL                  TCGA-EM-A3FN 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-EM-A3FO                  TCGA-EM-A3FP 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A25G                  TCGA-ET-A25L 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A25M                  TCGA-ET-A25O 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A2MY                  TCGA-ET-A2MZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A2N0                  TCGA-ET-A2N1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A2N4                  TCGA-ET-A2N5 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39I                  TCGA-ET-A39J 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39L                  TCGA-ET-A39M 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39N                  TCGA-ET-A39P 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A39R                  TCGA-ET-A39T 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BN                  TCGA-ET-A3BP 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BS                  TCGA-ET-A3BT 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BU                  TCGA-ET-A3BV 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3BW                  TCGA-ET-A3BX 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DO                  TCGA-ET-A3DP 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DS                  TCGA-ET-A3DT 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-ET-A3DV                  TCGA-ET-A3DW 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A22Z                  TCGA-FE-A230 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A231                  TCGA-FE-A232 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A233                  TCGA-FE-A234 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A235                  TCGA-FE-A236 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A237                  TCGA-FE-A239 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FE-A23A                  TCGA-FY-A2QD 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-FY-A3BL                  TCGA-GE-A2C6 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-H2-A2K9                  TCGA-IM-A3EB 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-IM-A3ED                  TCGA-J8-A3NZ 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
                 TCGA-J8-A3O0                  TCGA-J8-A3O1 
"DEL PEAK  8(7Q34) WILD-TYPE" "DEL PEAK  8(7Q34) WILD-TYPE" 
D5V5, multiclass
        clus
vv       DEL PEAK  8(7Q34) MUTATED DEL PEAK  8(7Q34) WILD-TYPE
  CLUS_1                         2                         127
  CLUS_2                         0                          50
  CLUS_3                         0                          89
  CLUS_4                         1                         136
D5V6, multiclass
        clus
vv       DEL PEAK  8(7Q34) MUTATED DEL PEAK  8(7Q34) WILD-TYPE
  CLUS_1                         2                         139
  CLUS_2                         1                         189
  CLUS_3                         0                          74
D5V7, multiclass
        clus
vv       DEL PEAK  8(7Q34) MUTATED DEL PEAK  8(7Q34) WILD-TYPE
  CLUS_1                         2                         117
  CLUS_2                         1                         142
  CLUS_3                         1                         143
D5V8, multiclass
        clus
vv       DEL PEAK  8(7Q34) MUTATED DEL PEAK  8(7Q34) WILD-TYPE
  CLUS_1                         1                         107
  CLUS_2                         1                         168
  CLUS_3                         2                         127

Clustering(6) Variable = Del Peak  9(8p12) mutation analysis
D6V1, multiclass
        clus
vv       DEL PEAK  9(8P12) MUTATED DEL PEAK  9(8P12) WILD-TYPE
  CLUS_1                         4                          31
  CLUS_2                         0                         330
  CLUS_3                         0                          65
D6V2, multiclass
        clus
vv       DEL PEAK  9(8P12) MUTATED DEL PEAK  9(8P12) WILD-TYPE
  CLUS_1                         3                         132
  CLUS_2                         1                          54
  CLUS_3                         0                         240
D6V3, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  9(8P12) MUTATED"
clus
  DEL PEAK  9(8P12) MUTATED DEL PEAK  9(8P12) WILD-TYPE 
                          2                         219 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A191                  TCGA-BJ-A192 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A28R                  TCGA-BJ-A28S 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A28T                  TCGA-BJ-A28V 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A28W                  TCGA-BJ-A28Z 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A290                  TCGA-BJ-A291 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A2N7                  TCGA-BJ-A2N9 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A2NA                  TCGA-BJ-A2P4 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A3EZ                  TCGA-BJ-A3F0 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-CE-A13K                  TCGA-CE-A27D 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-CE-A3MD                  TCGA-CE-A3ME 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DE-A0Y2                  TCGA-DE-A2OL 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DE-A3KN                  TCGA-DJ-A13M 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A13O                  TCGA-DJ-A13R 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A13S                  TCGA-DJ-A13V 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A13W                  TCGA-DJ-A13X 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QD                  TCGA-DJ-A1QE 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QF                  TCGA-DJ-A1QG 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QI                  TCGA-DJ-A1QL 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QM                  TCGA-DJ-A1QN 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QO                  TCGA-DJ-A2PN 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PO                  TCGA-DJ-A2PP 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PQ                  TCGA-DJ-A2PR 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PS                  TCGA-DJ-A2PU 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PV                  TCGA-DJ-A2PW 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PY                  TCGA-DJ-A2PZ 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q8                  TCGA-DJ-A2Q9 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A2QA                  TCGA-DJ-A2QB 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A2QC                  TCGA-DO-A1JZ 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DO-A1K0                  TCGA-E3-A3DY 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-E3-A3DZ                  TCGA-E3-A3E0 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-E3-A3E1                  TCGA-E3-A3E3 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-E3-A3E5                  TCGA-E8-A2EA 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-E8-A2JQ                  TCGA-EL-A3CL 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3CM                  TCGA-EL-A3CN 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3CO                  TCGA-EL-A3CP 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3CR                  TCGA-EL-A3CS 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3CT                  TCGA-EL-A3CU 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3CV                  TCGA-EL-A3CW 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3CX                  TCGA-EL-A3CY 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3CZ                  TCGA-EL-A3D0 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3D1                  TCGA-EL-A3D4 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3D5                  TCGA-EL-A3D6 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3GO                  TCGA-EL-A3GP 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3GQ                  TCGA-EL-A3GR 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3GS                  TCGA-EL-A3GU 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3GV                  TCGA-EL-A3GW 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3GX                  TCGA-EL-A3GY 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3GZ                  TCGA-EL-A3H1 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3H2                  TCGA-EL-A3H3 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3H4                  TCGA-EL-A3H5 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3H7                  TCGA-EL-A3H8 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3MW                  TCGA-EL-A3MX 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3MY                  TCGA-EL-A3MZ 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3N2                  TCGA-EL-A3N3 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A1CT                  TCGA-EM-A1CU 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A1CV                  TCGA-EM-A1CW 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A1YA                  TCGA-EM-A1YB 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A1YC                  TCGA-EM-A1YD 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A1YE                  TCGA-EM-A22I 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A22J                  TCGA-EM-A22L 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A22M                  TCGA-EM-A22O 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A22Q                  TCGA-EM-A2CJ 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A2CK                  TCGA-EM-A2CL 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A2CM                  TCGA-EM-A2CN 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A2CO                  TCGA-EM-A2CP 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A2CQ                  TCGA-EM-A2CS 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A2CU                  TCGA-EM-A2OV 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A2OY                  TCGA-EM-A2P1 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A3AI                  TCGA-EM-A3AJ 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A3AL                  TCGA-EM-A3AN 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A3AO                  TCGA-EM-A3AP 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A3FJ                  TCGA-EM-A3FL 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A3FN                  TCGA-EM-A3FO 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A3FP                  TCGA-ET-A25G 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A25L                  TCGA-ET-A25M 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A25O                  TCGA-ET-A2MY 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A2MZ                  TCGA-ET-A2N0 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A2N1                  TCGA-ET-A2N4 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A2N5                  TCGA-ET-A39I 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A39J                  TCGA-ET-A39L 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A39M                  TCGA-ET-A39N 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A39P                  TCGA-ET-A39R 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A39T                  TCGA-ET-A3BN 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A3BP                  TCGA-ET-A3BS 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A3BT                  TCGA-ET-A3BU 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A3BV                  TCGA-ET-A3BW 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A3BX                  TCGA-ET-A3DO 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A3DP                  TCGA-ET-A3DS 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A3DT                  TCGA-ET-A3DV 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A3DW                  TCGA-FE-A22Z 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-FE-A230                  TCGA-FE-A231 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-FE-A232                  TCGA-FE-A233 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-FE-A234                  TCGA-FE-A235 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-FE-A236                  TCGA-FE-A237 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-FE-A239                  TCGA-FE-A23A 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-FY-A2QD                  TCGA-FY-A3BL 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-GE-A2C6                  TCGA-H2-A2K9 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-IM-A3EB                  TCGA-IM-A3ED 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-J8-A3NZ                  TCGA-J8-A3O0 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-J8-A3O1 
"DEL PEAK  9(8P12) WILD-TYPE" 
D6V4, multiclass
[1] "Remove cluster labels:"    "DEL PEAK  9(8P12) MUTATED"
clus
  DEL PEAK  9(8P12) MUTATED DEL PEAK  9(8P12) WILD-TYPE 
                          2                         219 
                 TCGA-BJ-A0YZ                  TCGA-BJ-A0Z0 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A0Z2                  TCGA-BJ-A0Z3 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A0Z5                  TCGA-BJ-A0Z9 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZA                  TCGA-BJ-A0ZB 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZC                  TCGA-BJ-A0ZE 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A0ZG                  TCGA-BJ-A0ZJ 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A18Y                  TCGA-BJ-A18Z 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A191                  TCGA-BJ-A192 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A28R                  TCGA-BJ-A28S 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A28T                  TCGA-BJ-A28V 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A28W                  TCGA-BJ-A28Z 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A290                  TCGA-BJ-A291 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A2N7                  TCGA-BJ-A2N9 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A2NA                  TCGA-BJ-A2P4 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-BJ-A3EZ                  TCGA-BJ-A3F0 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-CE-A13K                  TCGA-CE-A27D 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-CE-A3MD                  TCGA-CE-A3ME 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DE-A0Y2                  TCGA-DE-A2OL 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DE-A3KN                  TCGA-DJ-A13M 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A13O                  TCGA-DJ-A13R 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A13S                  TCGA-DJ-A13V 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A13W                  TCGA-DJ-A13X 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QD                  TCGA-DJ-A1QE 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QF                  TCGA-DJ-A1QG 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QI                  TCGA-DJ-A1QL 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QM                  TCGA-DJ-A1QN 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A1QO                  TCGA-DJ-A2PN 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PO                  TCGA-DJ-A2PP 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PQ                  TCGA-DJ-A2PR 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PS                  TCGA-DJ-A2PU 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PV                  TCGA-DJ-A2PW 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A2PY                  TCGA-DJ-A2PZ 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q1                  TCGA-DJ-A2Q2 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q4                  TCGA-DJ-A2Q5 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q6                  TCGA-DJ-A2Q7 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A2Q8                  TCGA-DJ-A2Q9 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A2QA                  TCGA-DJ-A2QB 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DJ-A2QC                  TCGA-DO-A1JZ 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-DO-A1K0                  TCGA-E3-A3DY 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-E3-A3DZ                  TCGA-E3-A3E0 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-E3-A3E1                  TCGA-E3-A3E3 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-E3-A3E5                  TCGA-E8-A2EA 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-E8-A2JQ                  TCGA-EL-A3CL 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3CM                  TCGA-EL-A3CN 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3CO                  TCGA-EL-A3CP 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3CR                  TCGA-EL-A3CS 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3CT                  TCGA-EL-A3CU 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3CV                  TCGA-EL-A3CW 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3CX                  TCGA-EL-A3CY 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3CZ                  TCGA-EL-A3D0 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3D1                  TCGA-EL-A3D4 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3D5                  TCGA-EL-A3D6 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3GO                  TCGA-EL-A3GP 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3GQ                  TCGA-EL-A3GR 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3GS                  TCGA-EL-A3GU 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3GV                  TCGA-EL-A3GW 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3GX                  TCGA-EL-A3GY 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3GZ                  TCGA-EL-A3H1 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3H2                  TCGA-EL-A3H3 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3H4                  TCGA-EL-A3H5 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3H7                  TCGA-EL-A3H8 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3MW                  TCGA-EL-A3MX 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3MY                  TCGA-EL-A3MZ 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EL-A3N2                  TCGA-EL-A3N3 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A1CT                  TCGA-EM-A1CU 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A1CV                  TCGA-EM-A1CW 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A1YA                  TCGA-EM-A1YB 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A1YC                  TCGA-EM-A1YD 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A1YE                  TCGA-EM-A22I 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A22J                  TCGA-EM-A22L 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A22M                  TCGA-EM-A22O 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A22Q                  TCGA-EM-A2CJ 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A2CK                  TCGA-EM-A2CL 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A2CM                  TCGA-EM-A2CN 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A2CO                  TCGA-EM-A2CP 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A2CQ                  TCGA-EM-A2CS 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A2CU                  TCGA-EM-A2OV 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A2OY                  TCGA-EM-A2P1 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A3AI                  TCGA-EM-A3AJ 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A3AL                  TCGA-EM-A3AN 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A3AO                  TCGA-EM-A3AP 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A3FJ                  TCGA-EM-A3FL 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A3FN                  TCGA-EM-A3FO 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-EM-A3FP                  TCGA-ET-A25G 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A25L                  TCGA-ET-A25M 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A25O                  TCGA-ET-A2MY 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A2MZ                  TCGA-ET-A2N0 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A2N1                  TCGA-ET-A2N4 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A2N5                  TCGA-ET-A39I 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A39J                  TCGA-ET-A39L 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A39M                  TCGA-ET-A39N 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A39P                  TCGA-ET-A39R 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A39T                  TCGA-ET-A3BN 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A3BP                  TCGA-ET-A3BS 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A3BT                  TCGA-ET-A3BU 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A3BV                  TCGA-ET-A3BW 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A3BX                  TCGA-ET-A3DO 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A3DP                  TCGA-ET-A3DS 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A3DT                  TCGA-ET-A3DV 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-ET-A3DW                  TCGA-FE-A22Z 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-FE-A230                  TCGA-FE-A231 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-FE-A232                  TCGA-FE-A233 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-FE-A234                  TCGA-FE-A235 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-FE-A236                  TCGA-FE-A237 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-FE-A239                  TCGA-FE-A23A 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-FY-A2QD                  TCGA-FY-A3BL 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-GE-A2C6                  TCGA-H2-A2K9 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-IM-A3EB                  TCGA-IM-A3ED 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-J8-A3NZ                  TCGA-J8-A3O0 
"DEL PEAK  9(8P12) WILD-TYPE" "DEL PEAK  9(8P12) WILD-TYPE" 
                 TCGA-J8-A3O1 
"DEL PEAK  9(8P12) WILD-TYPE" 
D6V5, multiclass
        clus
vv       DEL PEAK  9(8P12) MUTATED DEL PEAK  9(8P12) WILD-TYPE
  CLUS_1                         4                         125
  CLUS_2                         0                          50
  CLUS_3                         0                          89
  CLUS_4                         0                         137
D6V6, multiclass
        clus
vv       DEL PEAK  9(8P12) MUTATED DEL PEAK  9(8P12) WILD-TYPE
  CLUS_1                         4                         137
  CLUS_2                         0                         190
  CLUS_3                         0                          74
D6V7, multiclass
        clus
vv       DEL PEAK  9(8P12) MUTATED DEL PEAK  9(8P12) WILD-TYPE
  CLUS_1                         4                         115
  CLUS_2                         0                         143
  CLUS_3                         0                         144
D6V8, multiclass
        clus
vv       DEL PEAK  9(8P12) MUTATED DEL PEAK  9(8P12) WILD-TYPE
  CLUS_1                         4                         104
  CLUS_2                         0                         169
  CLUS_3                         0                         129

Clustering(7) Variable = Del Peak 10(8q24.22) mutation analysis
D7V1, multiclass
        clus
vv       DEL PEAK 10(8Q24.22) MUTATED DEL PEAK 10(8Q24.22) WILD-TYPE
  CLUS_1                            5                             30
  CLUS_2                            2                            328
  CLUS_3                            0                             65
D7V2, multiclass
        clus
vv       DEL PEAK 10(8Q24.22) MUTATED DEL PEAK 10(8Q24.22) WILD-TYPE
  CLUS_1                            6                            129
  CLUS_2                            1                             54
  CLUS_3                            0                            240
D7V3, multiclass
        clus
vv       DEL PEAK 10(8Q24.22) MUTATED DEL PEAK 10(8Q24.22) WILD-TYPE
  CLUS_1                            2                             61
  CLUS_2                            1                             76
  CLUS_3                            1                             80
D7V4, multiclass
        clus
vv       DEL PEAK 10(8Q24.22) MUTATED DEL PEAK 10(8Q24.22) WILD-TYPE
  CLUS_1                            2                             25
  CLUS_2                            0                             97
  CLUS_3                            2                             95
D7V5, multiclass
        clus
vv       DEL PEAK 10(8Q24.22) MUTATED DEL PEAK 10(8Q24.22) WILD-TYPE
  CLUS_1                            7                            122
  CLUS_2                            0                             50
  CLUS_3                            0                             89
  CLUS_4                            0                            137
D7V6, multiclass
        clus
vv       DEL PEAK 10(8Q24.22) MUTATED DEL PEAK 10(8Q24.22) WILD-TYPE
  CLUS_1                            7                            134
  CLUS_2                            0                            190
  CLUS_3                            0                             74
D7V7, multiclass
        clus
vv       DEL PEAK 10(8Q24.22) MUTATED DEL PEAK 10(8Q24.22) WILD-TYPE
  CLUS_1                            7                            112
  CLUS_2                            0                            143
  CLUS_3                            0                            144
D7V8, multiclass
        clus
vv       DEL PEAK 10(8Q24.22) MUTATED DEL PEAK 10(8Q24.22) WILD-TYPE
  CLUS_1                            7                            101
  CLUS_2                            0                            169
  CLUS_3                            0                            129

Clustering(8) Variable = Del Peak 11(9p21.3) mutation analysis
D8V1, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                          13                            22
  CLUS_2                           3                           327
  CLUS_3                           1                            64
D8V2, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           8                           127
  CLUS_2                           2                            53
  CLUS_3                           7                           233
D8V3, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           0                            63
  CLUS_2                           2                            75
  CLUS_3                           3                            78
D8V4, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           2                            25
  CLUS_2                           2                            95
  CLUS_3                           1                            96
D8V5, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           9                           120
  CLUS_2                           3                            47
  CLUS_3                           1                            88
  CLUS_4                           4                           133
D8V6, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           8                           133
  CLUS_2                           6                           184
  CLUS_3                           3                            71
D8V7, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           7                           112
  CLUS_2                           0                           143
  CLUS_3                           9                           135
D8V8, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           8                           100
  CLUS_2                           8                           161
  CLUS_3                           0                           129

Clustering(9) Variable = Del Peak 12(9q22.32) mutation analysis
D9V1, multiclass
        clus
vv       DEL PEAK 12(9Q22.32) MUTATED DEL PEAK 12(9Q22.32) WILD-TYPE
  CLUS_1                           14                             21
  CLUS_2                            7                            323
  CLUS_3                            1                             64
D9V2, multiclass
        clus
vv       DEL PEAK 12(9Q22.32) MUTATED DEL PEAK 12(9Q22.32) WILD-TYPE
  CLUS_1                            9                            126
  CLUS_2                            3                             52
  CLUS_3                           10                            230
D9V3, multiclass
        clus
vv       DEL PEAK 12(9Q22.32) MUTATED DEL PEAK 12(9Q22.32) WILD-TYPE
  CLUS_1                            0                             63
  CLUS_2                            4                             73
  CLUS_3                            3                             78
D9V4, multiclass
        clus
vv       DEL PEAK 12(9Q22.32) MUTATED DEL PEAK 12(9Q22.32) WILD-TYPE
  CLUS_1                            4                             23
  CLUS_2                            2                             95
  CLUS_3                            1                             96
D9V5, multiclass
        clus
vv       DEL PEAK 12(9Q22.32) MUTATED DEL PEAK 12(9Q22.32) WILD-TYPE
  CLUS_1                           10                            119
  CLUS_2                            4                             46
  CLUS_3                            2                             87
  CLUS_4                            6                            131
D9V6, multiclass
        clus
vv       DEL PEAK 12(9Q22.32) MUTATED DEL PEAK 12(9Q22.32) WILD-TYPE
  CLUS_1                            9                            132
  CLUS_2                            9                            181
  CLUS_3                            4                             70
D9V7, multiclass
        clus
vv       DEL PEAK 12(9Q22.32) MUTATED DEL PEAK 12(9Q22.32) WILD-TYPE
  CLUS_1                            7                            112
  CLUS_2                            2                            141
  CLUS_3                           11                            133
D9V8, multiclass
        clus
vv       DEL PEAK 12(9Q22.32) MUTATED DEL PEAK 12(9Q22.32) WILD-TYPE
  CLUS_1                            8                            100
  CLUS_2                           10                            159
  CLUS_3                            2                            127

Clustering(10) Variable = Del Peak 13(10q21.2) mutation analysis
D10V1, multiclass
        clus
vv       DEL PEAK 13(10Q21.2) MUTATED DEL PEAK 13(10Q21.2) WILD-TYPE
  CLUS_1                            4                             31
  CLUS_2                            6                            324
  CLUS_3                            0                             65
D10V2, multiclass
        clus
vv       DEL PEAK 13(10Q21.2) MUTATED DEL PEAK 13(10Q21.2) WILD-TYPE
  CLUS_1                            3                            132
  CLUS_2                            4                             51
  CLUS_3                            3                            237
D10V3, multiclass
        clus
vv       DEL PEAK 13(10Q21.2) MUTATED DEL PEAK 13(10Q21.2) WILD-TYPE
  CLUS_1                            3                             60
  CLUS_2                            0                             77
  CLUS_3                            2                             79
D10V4, multiclass
        clus
vv       DEL PEAK 13(10Q21.2) MUTATED DEL PEAK 13(10Q21.2) WILD-TYPE
  CLUS_1                            0                             27
  CLUS_2                            2                             95
  CLUS_3                            3                             94
D10V5, multiclass
        clus
vv       DEL PEAK 13(10Q21.2) MUTATED DEL PEAK 13(10Q21.2) WILD-TYPE
  CLUS_1                            5                            124
  CLUS_2                            2                             48
  CLUS_3                            3                             86
  CLUS_4                            0                            137
D10V6, multiclass
        clus
vv       DEL PEAK 13(10Q21.2) MUTATED DEL PEAK 13(10Q21.2) WILD-TYPE
  CLUS_1                            5                            136
  CLUS_2                            2                            188
  CLUS_3                            3                             71
D10V7, multiclass
        clus
vv       DEL PEAK 13(10Q21.2) MUTATED DEL PEAK 13(10Q21.2) WILD-TYPE
  CLUS_1                            5                            114
  CLUS_2                            2                            141
  CLUS_3                            3                            141
D10V8, multiclass
        clus
vv       DEL PEAK 13(10Q21.2) MUTATED DEL PEAK 13(10Q21.2) WILD-TYPE
  CLUS_1                            4                            104
  CLUS_2                            4                            165
  CLUS_3                            2                            127

Clustering(11) Variable = Del Peak 14(10q23.31) mutation analysis
D11V1, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                             5                              30
  CLUS_2                             5                             325
  CLUS_3                             0                              65
D11V2, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                             6                             129
  CLUS_2                             2                              53
  CLUS_3                             2                             238
D11V3, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                             4                              59
  CLUS_2                             0                              77
  CLUS_3                             1                              80
D11V4, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                             0                              27
  CLUS_2                             0                              97
  CLUS_3                             5                              92
D11V5, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                             8                             121
  CLUS_2                             0                              50
  CLUS_3                             2                              87
  CLUS_4                             0                             137
D11V6, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                             8                             133
  CLUS_2                             0                             190
  CLUS_3                             2                              72
D11V7, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                             7                             112
  CLUS_2                             1                             142
  CLUS_3                             2                             142
D11V8, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) MUTATED DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                             7                             101
  CLUS_2                             2                             167
  CLUS_3                             1                             128

Clustering(12) Variable = Del Peak 15(11p15.1) mutation analysis
D12V1, multiclass
        clus
vv       DEL PEAK 15(11P15.1) MUTATED DEL PEAK 15(11P15.1) WILD-TYPE
  CLUS_1                            5                             30
  CLUS_2                            0                            330
  CLUS_3                            0                             65
D12V2, multiclass
        clus
vv       DEL PEAK 15(11P15.1) MUTATED DEL PEAK 15(11P15.1) WILD-TYPE
  CLUS_1                            4                            131
  CLUS_2                            0                             55
  CLUS_3                            1                            239
D12V3, multiclass
        clus
vv       DEL PEAK 15(11P15.1) MUTATED DEL PEAK 15(11P15.1) WILD-TYPE
  CLUS_1                            1                             62
  CLUS_2                            0                             77
  CLUS_3                            2                             79
D12V4, multiclass
        clus
vv       DEL PEAK 15(11P15.1) MUTATED DEL PEAK 15(11P15.1) WILD-TYPE
  CLUS_1                            0                             27
  CLUS_2                            1                             96
  CLUS_3                            2                             95
D12V5, multiclass
        clus
vv       DEL PEAK 15(11P15.1) MUTATED DEL PEAK 15(11P15.1) WILD-TYPE
  CLUS_1                            4                            125
  CLUS_2                            1                             49
  CLUS_3                            0                             89
  CLUS_4                            0                            137
D12V6, multiclass
        clus
vv       DEL PEAK 15(11P15.1) MUTATED DEL PEAK 15(11P15.1) WILD-TYPE
  CLUS_1                            4                            137
  CLUS_2                            1                            189
  CLUS_3                            0                             74
D12V7, multiclass
        clus
vv       DEL PEAK 15(11P15.1) MUTATED DEL PEAK 15(11P15.1) WILD-TYPE
  CLUS_1                            4                            115
  CLUS_2                            0                            143
  CLUS_3                            1                            143
D12V8, multiclass
        clus
vv       DEL PEAK 15(11P15.1) MUTATED DEL PEAK 15(11P15.1) WILD-TYPE
  CLUS_1                            4                            104
  CLUS_2                            1                            168
  CLUS_3                            0                            129

Clustering(13) Variable = Del Peak 16(13q12.3) mutation analysis
D13V1, multiclass
        clus
vv       DEL PEAK 16(13Q12.3) MUTATED DEL PEAK 16(13Q12.3) WILD-TYPE
  CLUS_1                            5                             30
  CLUS_2                            8                            322
  CLUS_3                            2                             63
D13V2, multiclass
        clus
vv       DEL PEAK 16(13Q12.3) MUTATED DEL PEAK 16(13Q12.3) WILD-TYPE
  CLUS_1                           10                            125
  CLUS_2                            2                             53
  CLUS_3                            3                            237
D13V3, multiclass
        clus
vv       DEL PEAK 16(13Q12.3) MUTATED DEL PEAK 16(13Q12.3) WILD-TYPE
  CLUS_1                            1                             62
  CLUS_2                            1                             76
  CLUS_3                            4                             77
D13V4, multiclass
        clus
vv       DEL PEAK 16(13Q12.3) MUTATED DEL PEAK 16(13Q12.3) WILD-TYPE
  CLUS_1                            1                             26
  CLUS_2                            1                             96
  CLUS_3                            4                             93
D13V5, multiclass
        clus
vv       DEL PEAK 16(13Q12.3) MUTATED DEL PEAK 16(13Q12.3) WILD-TYPE
  CLUS_1                            8                            121
  CLUS_2                            2                             48
  CLUS_3                            2                             87
  CLUS_4                            0                            137
D13V6, multiclass
        clus
vv       DEL PEAK 16(13Q12.3) MUTATED DEL PEAK 16(13Q12.3) WILD-TYPE
  CLUS_1                            8                            133
  CLUS_2                            2                            188
  CLUS_3                            2                             72
D13V7, multiclass
        clus
vv       DEL PEAK 16(13Q12.3) MUTATED DEL PEAK 16(13Q12.3) WILD-TYPE
  CLUS_1                            7                            112
  CLUS_2                            3                            140
  CLUS_3                            3                            141
D13V8, multiclass
        clus
vv       DEL PEAK 16(13Q12.3) MUTATED DEL PEAK 16(13Q12.3) WILD-TYPE
  CLUS_1                            7                            101
  CLUS_2                            3                            166
  CLUS_3                            3                            126

Clustering(14) Variable = Del Peak 17(13q14.3) mutation analysis
D14V1, multiclass
        clus
vv       DEL PEAK 17(13Q14.3) MUTATED DEL PEAK 17(13Q14.3) WILD-TYPE
  CLUS_1                            6                             29
  CLUS_2                            9                            321
  CLUS_3                            3                             62
D14V2, multiclass
        clus
vv       DEL PEAK 17(13Q14.3) MUTATED DEL PEAK 17(13Q14.3) WILD-TYPE
  CLUS_1                           10                            125
  CLUS_2                            2                             53
  CLUS_3                            6                            234
D14V3, multiclass
        clus
vv       DEL PEAK 17(13Q14.3) MUTATED DEL PEAK 17(13Q14.3) WILD-TYPE
  CLUS_1                            2                             61
  CLUS_2                            1                             76
  CLUS_3                            7                             74
D14V4, multiclass
        clus
vv       DEL PEAK 17(13Q14.3) MUTATED DEL PEAK 17(13Q14.3) WILD-TYPE
  CLUS_1                            1                             26
  CLUS_2                            4                             93
  CLUS_3                            5                             92
D14V5, multiclass
        clus
vv       DEL PEAK 17(13Q14.3) MUTATED DEL PEAK 17(13Q14.3) WILD-TYPE
  CLUS_1                            8                            121
  CLUS_2                            2                             48
  CLUS_3                            4                             85
  CLUS_4                            0                            137
D14V6, multiclass
        clus
vv       DEL PEAK 17(13Q14.3) MUTATED DEL PEAK 17(13Q14.3) WILD-TYPE
  CLUS_1                            8                            133
  CLUS_2                            2                            188
  CLUS_3                            4                             70
D14V7, multiclass
        clus
vv       DEL PEAK 17(13Q14.3) MUTATED DEL PEAK 17(13Q14.3) WILD-TYPE
  CLUS_1                            8                            111
  CLUS_2                            6                            137
  CLUS_3                            2                            142
D14V8, multiclass
        clus
vv       DEL PEAK 17(13Q14.3) MUTATED DEL PEAK 17(13Q14.3) WILD-TYPE
  CLUS_1                            8                            100
  CLUS_2                            3                            166
  CLUS_3                            5                            124

Clustering(15) Variable = Del Peak 18(15q25.3) mutation analysis
D15V1, multiclass
        clus
vv       DEL PEAK 18(15Q25.3) MUTATED DEL PEAK 18(15Q25.3) WILD-TYPE
  CLUS_1                            4                             31
  CLUS_2                            3                            327
  CLUS_3                            0                             65
D15V2, multiclass
        clus
vv       DEL PEAK 18(15Q25.3) MUTATED DEL PEAK 18(15Q25.3) WILD-TYPE
  CLUS_1                            5                            130
  CLUS_2                            1                             54
  CLUS_3                            1                            239
D15V3, multiclass
        clus
vv       DEL PEAK 18(15Q25.3) MUTATED DEL PEAK 18(15Q25.3) WILD-TYPE
  CLUS_1                            0                             63
  CLUS_2                            2                             75
  CLUS_3                            3                             78
D15V4, multiclass
        clus
vv       DEL PEAK 18(15Q25.3) MUTATED DEL PEAK 18(15Q25.3) WILD-TYPE
  CLUS_1                            2                             25
  CLUS_2                            0                             97
  CLUS_3                            3                             94
D15V5, multiclass
        clus
vv       DEL PEAK 18(15Q25.3) MUTATED DEL PEAK 18(15Q25.3) WILD-TYPE
  CLUS_1                            5                            124
  CLUS_2                            0                             50
  CLUS_3                            0                             89
  CLUS_4                            1                            136
D15V6, multiclass
        clus
vv       DEL PEAK 18(15Q25.3) MUTATED DEL PEAK 18(15Q25.3) WILD-TYPE
  CLUS_1                            5                            136
  CLUS_2                            1                            189
  CLUS_3                            0                             74
D15V7, multiclass
        clus
vv       DEL PEAK 18(15Q25.3) MUTATED DEL PEAK 18(15Q25.3) WILD-TYPE
  CLUS_1                            6                            113
  CLUS_2                            1                            142
  CLUS_3                            0                            144
D15V8, multiclass
        clus
vv       DEL PEAK 18(15Q25.3) MUTATED DEL PEAK 18(15Q25.3) WILD-TYPE
  CLUS_1                            6                            102
  CLUS_2                            1                            168
  CLUS_3                            0                            129

Clustering(16) Variable = Del Peak 20(16q23.3) mutation analysis
D16V1, multiclass
        clus
vv       DEL PEAK 20(16Q23.3) MUTATED DEL PEAK 20(16Q23.3) WILD-TYPE
  CLUS_1                            2                             33
  CLUS_2                            3                            327
  CLUS_3                            1                             64
D16V2, multiclass
        clus
vv       DEL PEAK 20(16Q23.3) MUTATED DEL PEAK 20(16Q23.3) WILD-TYPE
  CLUS_1                            0                            135
  CLUS_2                            0                             55
  CLUS_3                            6                            234
D16V3, multiclass
        clus
vv       DEL PEAK 20(16Q23.3) MUTATED DEL PEAK 20(16Q23.3) WILD-TYPE
  CLUS_1                            0                             63
  CLUS_2                            2                             75
  CLUS_3                            3                             78
D16V4, multiclass
        clus
vv       DEL PEAK 20(16Q23.3) MUTATED DEL PEAK 20(16Q23.3) WILD-TYPE
  CLUS_1                            1                             26
  CLUS_2                            4                             93
  CLUS_3                            0                             97
D16V5, multiclass
        clus
vv       DEL PEAK 20(16Q23.3) MUTATED DEL PEAK 20(16Q23.3) WILD-TYPE
  CLUS_1                            0                            129
  CLUS_2                            2                             48
  CLUS_3                            1                             88
  CLUS_4                            3                            134
D16V6, multiclass
        clus
vv       DEL PEAK 20(16Q23.3) MUTATED DEL PEAK 20(16Q23.3) WILD-TYPE
  CLUS_1                            0                            141
  CLUS_2                            4                            186
  CLUS_3                            2                             72
D16V7, multiclass
        clus
vv       DEL PEAK 20(16Q23.3) MUTATED DEL PEAK 20(16Q23.3) WILD-TYPE
  CLUS_1                            0                            119
  CLUS_2                            2                            141
  CLUS_3                            4                            140
D16V8, multiclass
        clus
vv       DEL PEAK 20(16Q23.3) MUTATED DEL PEAK 20(16Q23.3) WILD-TYPE
  CLUS_1                            0                            108
  CLUS_2                            4                            165
  CLUS_3                            2                            127

Clustering(17) Variable = Del Peak 21(17p13.1) mutation analysis
D17V1, multiclass
        clus
vv       DEL PEAK 21(17P13.1) MUTATED DEL PEAK 21(17P13.1) WILD-TYPE
  CLUS_1                            4                             31
  CLUS_2                            4                            326
  CLUS_3                            0                             65
D17V2, multiclass
        clus
vv       DEL PEAK 21(17P13.1) MUTATED DEL PEAK 21(17P13.1) WILD-TYPE
  CLUS_1                            3                            132
  CLUS_2                            1                             54
  CLUS_3                            4                            236
D17V3, multiclass
        clus
vv       DEL PEAK 21(17P13.1) MUTATED DEL PEAK 21(17P13.1) WILD-TYPE
  CLUS_1                            1                             62
  CLUS_2                            1                             76
  CLUS_3                            1                             80
D17V4, multiclass
        clus
vv       DEL PEAK 21(17P13.1) MUTATED DEL PEAK 21(17P13.1) WILD-TYPE
  CLUS_1                            0                             27
  CLUS_2                            1                             96
  CLUS_3                            2                             95
D17V5, multiclass
        clus
vv       DEL PEAK 21(17P13.1) MUTATED DEL PEAK 21(17P13.1) WILD-TYPE
  CLUS_1                            4                            125
  CLUS_2                            0                             50
  CLUS_3                            1                             88
  CLUS_4                            3                            134
D17V6, multiclass
        clus
vv       DEL PEAK 21(17P13.1) MUTATED DEL PEAK 21(17P13.1) WILD-TYPE
  CLUS_1                            4                            137
  CLUS_2                            3                            187
  CLUS_3                            1                             73
D17V7, multiclass
        clus
vv       DEL PEAK 21(17P13.1) MUTATED DEL PEAK 21(17P13.1) WILD-TYPE
  CLUS_1                            4                            115
  CLUS_2                            0                            143
  CLUS_3                            4                            140
D17V8, multiclass
        clus
vv       DEL PEAK 21(17P13.1) MUTATED DEL PEAK 21(17P13.1) WILD-TYPE
  CLUS_1                            4                            104
  CLUS_2                            3                            166
  CLUS_3                            1                            128

Clustering(18) Variable = Del Peak 22(18p11.21) mutation analysis
D18V1, multiclass
        clus
vv       DEL PEAK 22(18P11.21) MUTATED DEL PEAK 22(18P11.21) WILD-TYPE
  CLUS_1                             3                              32
  CLUS_2                             0                             330
  CLUS_3                             1                              64
D18V2, multiclass
        clus
vv       DEL PEAK 22(18P11.21) MUTATED DEL PEAK 22(18P11.21) WILD-TYPE
  CLUS_1                             3                             132
  CLUS_2                             0                              55
  CLUS_3                             1                             239
D18V3, multiclass
        clus
vv       DEL PEAK 22(18P11.21) MUTATED DEL PEAK 22(18P11.21) WILD-TYPE
  CLUS_1                             1                              62
  CLUS_2                             1                              76
  CLUS_3                             1                              80
D18V4, multiclass
        clus
vv       DEL PEAK 22(18P11.21) MUTATED DEL PEAK 22(18P11.21) WILD-TYPE
  CLUS_1                             1                              26
  CLUS_2                             0                              97
  CLUS_3                             2                              95
D18V5, multiclass
        clus
vv       DEL PEAK 22(18P11.21) MUTATED DEL PEAK 22(18P11.21) WILD-TYPE
  CLUS_1                             3                             126
  CLUS_2                             0                              50
  CLUS_3                             1                              88
  CLUS_4                             0                             137
D18V6, multiclass
        clus
vv       DEL PEAK 22(18P11.21) MUTATED DEL PEAK 22(18P11.21) WILD-TYPE
  CLUS_1                             3                             138
  CLUS_2                             0                             190
  CLUS_3                             1                              73
D18V7, multiclass
        clus
vv       DEL PEAK 22(18P11.21) MUTATED DEL PEAK 22(18P11.21) WILD-TYPE
  CLUS_1                             3                             116
  CLUS_2                             1                             142
  CLUS_3                             0                             144
D18V8, multiclass
        clus
vv       DEL PEAK 22(18P11.21) MUTATED DEL PEAK 22(18P11.21) WILD-TYPE
  CLUS_1                             3                             105
  CLUS_2                             0                             169
  CLUS_3                             1                             128

Clustering(19) Variable = Del Peak 23(19p13.2) mutation analysis
D19V1, multiclass
        clus
vv       DEL PEAK 23(19P13.2) MUTATED DEL PEAK 23(19P13.2) WILD-TYPE
  CLUS_1                            3                             32
  CLUS_2                            3                            327
  CLUS_3                            1                             64
D19V2, multiclass
        clus
vv       DEL PEAK 23(19P13.2) MUTATED DEL PEAK 23(19P13.2) WILD-TYPE
  CLUS_1                            7                            128
  CLUS_2                            0                             55
  CLUS_3                            0                            240
D19V3, multiclass
        clus
vv       DEL PEAK 23(19P13.2) MUTATED DEL PEAK 23(19P13.2) WILD-TYPE
  CLUS_1                            4                             59
  CLUS_2                            0                             77
  CLUS_3                            1                             80
D19V4, multiclass
        clus
vv       DEL PEAK 23(19P13.2) MUTATED DEL PEAK 23(19P13.2) WILD-TYPE
  CLUS_1                            1                             26
  CLUS_2                            0                             97
  CLUS_3                            4                             93
D19V5, multiclass
        clus
vv       DEL PEAK 23(19P13.2) MUTATED DEL PEAK 23(19P13.2) WILD-TYPE
  CLUS_1                            7                            122
  CLUS_2                            0                             50
  CLUS_3                            0                             89
  CLUS_4                            0                            137
D19V6, multiclass
        clus
vv       DEL PEAK 23(19P13.2) MUTATED DEL PEAK 23(19P13.2) WILD-TYPE
  CLUS_1                            7                            134
  CLUS_2                            0                            190
  CLUS_3                            0                             74
D19V7, multiclass
        clus
vv       DEL PEAK 23(19P13.2) MUTATED DEL PEAK 23(19P13.2) WILD-TYPE
  CLUS_1                            6                            113
  CLUS_2                            0                            143
  CLUS_3                            0                            144
D19V8, multiclass
        clus
vv       DEL PEAK 23(19P13.2) MUTATED DEL PEAK 23(19P13.2) WILD-TYPE
  CLUS_1                            6                            102
  CLUS_2                            0                            169
  CLUS_3                            0                            129

Clustering(20) Variable = Del Peak 26(21q21.1) mutation analysis
D20V1, multiclass
        clus
vv       DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE
  CLUS_1                            6                             29
  CLUS_2                            1                            329
  CLUS_3                            1                             64
D20V2, multiclass
        clus
vv       DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE
  CLUS_1                            4                            131
  CLUS_2                            1                             54
  CLUS_3                            3                            237
D20V3, multiclass
        clus
vv       DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE
  CLUS_1                            1                             62
  CLUS_2                            3                             74
  CLUS_3                            0                             81
D20V4, multiclass
        clus
vv       DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE
  CLUS_1                            2                             25
  CLUS_2                            1                             96
  CLUS_3                            1                             96
D20V5, multiclass
        clus
vv       DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE
  CLUS_1                            4                            125
  CLUS_2                            2                             48
  CLUS_3                            1                             88
  CLUS_4                            1                            136
D20V6, multiclass
        clus
vv       DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE
  CLUS_1                            4                            137
  CLUS_2                            2                            188
  CLUS_3                            2                             72
D20V7, multiclass
        clus
vv       DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE
  CLUS_1                            4                            115
  CLUS_2                            0                            143
  CLUS_3                            3                            141
D20V8, multiclass
        clus
vv       DEL PEAK 26(21Q21.1) MUTATED DEL PEAK 26(21Q21.1) WILD-TYPE
  CLUS_1                            4                            104
  CLUS_2                            3                            166
  CLUS_3                            0                            129

Clustering(21) Variable = Del Peak 27(22q13.31) mutation analysis
D21V1, multiclass
        clus
vv       DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  CLUS_1                             9                              26
  CLUS_2                             0                             330
  CLUS_3                            65                               0
D21V2, multiclass
        clus
vv       DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  CLUS_1                            37                              98
  CLUS_2                             5                              50
  CLUS_3                            32                             208
D21V3, multiclass
        clus
vv       DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  CLUS_1                            15                              48
  CLUS_2                            10                              67
  CLUS_3                            13                              68
D21V4, multiclass
        clus
vv       DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  CLUS_1                             7                              20
  CLUS_2                            11                              86
  CLUS_3                            20                              77
D21V5, multiclass
        clus
vv       DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  CLUS_1                            36                              93
  CLUS_2                             4                              46
  CLUS_3                            21                              68
  CLUS_4                             7                             130
D21V6, multiclass
        clus
vv       DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  CLUS_1                            36                             105
  CLUS_2                            15                             175
  CLUS_3                            17                              57
D21V7, multiclass
        clus
vv       DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  CLUS_1                            31                              88
  CLUS_2                            21                             122
  CLUS_3                            18                             126
D21V8, multiclass
        clus
vv       DEL PEAK 27(22Q13.31) MUTATED DEL PEAK 27(22Q13.31) WILD-TYPE
  CLUS_1                            28                              80
  CLUS_2                            20                             149
  CLUS_3                            22                             107

Clustering(22) Variable = Del Peak 28(22q13.2) mutation analysis
D22V1, multiclass
        clus
vv       DEL PEAK 28(22Q13.2) MUTATED DEL PEAK 28(22Q13.2) WILD-TYPE
  CLUS_1                            9                             26
  CLUS_2                            0                            330
  CLUS_3                           65                              0
D22V2, multiclass
        clus
vv       DEL PEAK 28(22Q13.2) MUTATED DEL PEAK 28(22Q13.2) WILD-TYPE
  CLUS_1                           37                             98
  CLUS_2                            5                             50
  CLUS_3                           32                            208
D22V3, multiclass
        clus
vv       DEL PEAK 28(22Q13.2) MUTATED DEL PEAK 28(22Q13.2) WILD-TYPE
  CLUS_1                           15                             48
  CLUS_2                           10                             67
  CLUS_3                           13                             68
D22V4, multiclass
        clus
vv       DEL PEAK 28(22Q13.2) MUTATED DEL PEAK 28(22Q13.2) WILD-TYPE
  CLUS_1                            7                             20
  CLUS_2                           11                             86
  CLUS_3                           20                             77
D22V5, multiclass
        clus
vv       DEL PEAK 28(22Q13.2) MUTATED DEL PEAK 28(22Q13.2) WILD-TYPE
  CLUS_1                           36                             93
  CLUS_2                            4                             46
  CLUS_3                           21                             68
  CLUS_4                            7                            130
D22V6, multiclass
        clus
vv       DEL PEAK 28(22Q13.2) MUTATED DEL PEAK 28(22Q13.2) WILD-TYPE
  CLUS_1                           36                            105
  CLUS_2                           15                            175
  CLUS_3                           17                             57
D22V7, multiclass
        clus
vv       DEL PEAK 28(22Q13.2) MUTATED DEL PEAK 28(22Q13.2) WILD-TYPE
  CLUS_1                           31                             88
  CLUS_2                           21                            122
  CLUS_3                           18                            126
D22V8, multiclass
        clus
vv       DEL PEAK 28(22Q13.2) MUTATED DEL PEAK 28(22Q13.2) WILD-TYPE
  CLUS_1                           28                             80
  CLUS_2                           20                            149
  CLUS_3                           22                            107

Clustering(23) Variable = Del Peak 29(22q13.32) mutation analysis
D23V1, multiclass
        clus
vv       DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE
  CLUS_1                             9                              26
  CLUS_2                             1                             329
  CLUS_3                            65                               0
D23V2, multiclass
        clus
vv       DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE
  CLUS_1                            38                              97
  CLUS_2                             5                              50
  CLUS_3                            32                             208
D23V3, multiclass
        clus
vv       DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE
  CLUS_1                            15                              48
  CLUS_2                            10                              67
  CLUS_3                            13                              68
D23V4, multiclass
        clus
vv       DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE
  CLUS_1                             7                              20
  CLUS_2                            11                              86
  CLUS_3                            20                              77
D23V5, multiclass
        clus
vv       DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE
  CLUS_1                            37                              92
  CLUS_2                             4                              46
  CLUS_3                            21                              68
  CLUS_4                             7                             130
D23V6, multiclass
        clus
vv       DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE
  CLUS_1                            37                             104
  CLUS_2                            15                             175
  CLUS_3                            17                              57
D23V7, multiclass
        clus
vv       DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE
  CLUS_1                            32                              87
  CLUS_2                            21                             122
  CLUS_3                            18                             126
D23V8, multiclass
        clus
vv       DEL PEAK 29(22Q13.32) MUTATED DEL PEAK 29(22Q13.32) WILD-TYPE
  CLUS_1                            29                              79
  CLUS_2                            20                             149
  CLUS_3                            22                             107

Clustering(24) Variable = Del Peak 30(Xq22.1) mutation analysis
D24V1, multiclass
        clus
vv       DEL PEAK 30(XQ22.1) MUTATED DEL PEAK 30(XQ22.1) WILD-TYPE
  CLUS_1                           3                            32
  CLUS_2                           3                           327
  CLUS_3                           0                            65
D24V2, multiclass
        clus
vv       DEL PEAK 30(XQ22.1) MUTATED DEL PEAK 30(XQ22.1) WILD-TYPE
  CLUS_1                           3                           132
  CLUS_2                           1                            54
  CLUS_3                           2                           238
D24V3, multiclass
        clus
vv       DEL PEAK 30(XQ22.1) MUTATED DEL PEAK 30(XQ22.1) WILD-TYPE
  CLUS_1                           3                            60
  CLUS_2                           0                            77
  CLUS_3                           1                            80
D24V4, multiclass
        clus
vv       DEL PEAK 30(XQ22.1) MUTATED DEL PEAK 30(XQ22.1) WILD-TYPE
  CLUS_1                           0                            27
  CLUS_2                           0                            97
  CLUS_3                           4                            93
D24V5, multiclass
        clus
vv       DEL PEAK 30(XQ22.1) MUTATED DEL PEAK 30(XQ22.1) WILD-TYPE
  CLUS_1                           3                           126
  CLUS_2                           1                            49
  CLUS_3                           1                            88
  CLUS_4                           1                           136
D24V6, multiclass
        clus
vv       DEL PEAK 30(XQ22.1) MUTATED DEL PEAK 30(XQ22.1) WILD-TYPE
  CLUS_1                           3                           138
  CLUS_2                           2                           188
  CLUS_3                           1                            73
D24V7, multiclass
        clus
vv       DEL PEAK 30(XQ22.1) MUTATED DEL PEAK 30(XQ22.1) WILD-TYPE
  CLUS_1                           3                           116
  CLUS_2                           2                           141
  CLUS_3                           1                           143
D24V8, multiclass
        clus
vv       DEL PEAK 30(XQ22.1) MUTATED DEL PEAK 30(XQ22.1) WILD-TYPE
  CLUS_1                           3                           105
  CLUS_2                           1                           168
  CLUS_3                           2                           127

Clustering(25) Variable = Del Peak 31(Xq22.3) mutation analysis
D25V1, multiclass
        clus
vv       DEL PEAK 31(XQ22.3) MUTATED DEL PEAK 31(XQ22.3) WILD-TYPE
  CLUS_1                           3                            32
  CLUS_2                           1                           329
  CLUS_3                           0                            65
D25V2, multiclass
        clus
vv       DEL PEAK 31(XQ22.3) MUTATED DEL PEAK 31(XQ22.3) WILD-TYPE
  CLUS_1                           3                           132
  CLUS_2                           1                            54
  CLUS_3                           0                           240
D25V3, multiclass
        clus
vv       DEL PEAK 31(XQ22.3) MUTATED DEL PEAK 31(XQ22.3) WILD-TYPE
  CLUS_1                           2                            61
  CLUS_2                           0                            77
  CLUS_3                           1                            80
D25V4, multiclass
        clus
vv       DEL PEAK 31(XQ22.3) MUTATED DEL PEAK 31(XQ22.3) WILD-TYPE
  CLUS_1                           0                            27
  CLUS_2                           0                            97
  CLUS_3                           3                            94
D25V5, multiclass
        clus
vv       DEL PEAK 31(XQ22.3) MUTATED DEL PEAK 31(XQ22.3) WILD-TYPE
  CLUS_1                           3                           126
  CLUS_2                           1                            49
  CLUS_3                           0                            89
  CLUS_4                           0                           137
D25V6, multiclass
        clus
vv       DEL PEAK 31(XQ22.3) MUTATED DEL PEAK 31(XQ22.3) WILD-TYPE
  CLUS_1                           3                           138
  CLUS_2                           1                           189
  CLUS_3                           0                            74
D25V7, multiclass
        clus
vv       DEL PEAK 31(XQ22.3) MUTATED DEL PEAK 31(XQ22.3) WILD-TYPE
  CLUS_1                           3                           116
  CLUS_2                           1                           142
  CLUS_3                           0                           144
D25V8, multiclass
        clus
vv       DEL PEAK 31(XQ22.3) MUTATED DEL PEAK 31(XQ22.3) WILD-TYPE
  CLUS_1                           3                           105
  CLUS_2                           0                           169
  CLUS_3                           1                           128
                     V1                      V2                      V3 
              "CN_CNMF"      "METHLYATION_CNMF"             "RPPA_CNMF" 
                     V4                      V5                      V6 
   "RPPA_CHIERARCHICAL"          "MRNASEQ_CNMF" "MRNASEQ_CHIERARCHICAL" 
                     V7                      V8 
          "MIRSEQ_CNMF"  "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
