Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1q21.3)	60 (53%)	54	0.058544	1	0.38721	1	0.31822	1	0.018615	1	0.58034	1	0.56573	1
Amp Peak  2(2p24.3)	29 (25%)	85	0.14713	1	0.22011	1	0.42845	1	0.42058	1	0.086885	1	0.0056044	1
Amp Peak  3(3q26.2)	89 (78%)	25	4.5481e-05	0.0129	0.025068	1	0.23393	1	0.025108	1	0.84959	1	0.10529	1
Amp Peak  4(3q28)	88 (77%)	26	3.7847e-05	0.0107	0.0042391	1	0.1309	1	0.0047244	1	0.8181	1	0.062998	1
Amp Peak  5(4q12)	12 (11%)	102	1	1	0.13125	1	0.42733	1	0.090085	1	0.21598	1	0.020828	1
Amp Peak  6(5p15.33)	50 (44%)	64	2.8754e-05	0.00822	0.89814	1	0.5395	1	0.67605	1	0.38194	1	0.088937	1
Amp Peak  7(6q12)	21 (18%)	93	0.60517	1	0.43548	1	0.18809	1	0.057001	1	0.2386	1	0.18147	1
Amp Peak  8(7p11.2)	23 (20%)	91	0.071819	1	0.24915	1	0.060049	1	0.94359	1	0.06471	1	0.057689	1
Amp Peak  9(8q24.21)	47 (41%)	67	0.17275	1	0.70622	1	0.77143	1	0.88717	1	0.089099	1	0.49105	1
Amp Peak 10(9p24.1)	26 (23%)	88	0.45515	1	0.25616	1	1	1	0.65287	1	0.23351	1	0.68528	1
Amp Peak 11(11p13)	8 (7%)	106	0.62942	1	0.38824	1	0.31781	1	0.076736	1	0.73041	1	0.89386	1
Amp Peak 12(11q13.3)	16 (14%)	98	0.018587	1	0.2144	1	0.034515	1	0.03076	1	0.10718	1	0.88524	1
Amp Peak 13(11q22.1)	24 (21%)	90	0.0044324	1	0.0015632	0.424	0.017648	1	0.23195	1	0.013247	1	0.12332	1
Amp Peak 14(13q22.1)	24 (21%)	90	0.057636	1	0.039045	1	0.23382	1	0.035554	1	0.16226	1	0.019537	1
Amp Peak 15(14q24.1)	23 (20%)	91	0.75282	1	0.64298	1	0.51405	1	0.10924	1	0.70535	1	0.95534	1
Amp Peak 16(15q26.3)	29 (25%)	85	0.069231	1	0.76541	1	0.1999	1	0.53837	1	0.92776	1	1	1
Amp Peak 17(16p13.13)	28 (25%)	86	0.15221	1	0.56148	1	0.66715	1	0.47355	1	0.68238	1	0.46536	1
Amp Peak 18(17q12)	19 (17%)	95	0.19718	1	0.07245	1	0.039928	1	0.016002	1	0.11156	1	0.065029	1
Amp Peak 19(17q25.1)	30 (26%)	84	0.21953	1	0.034488	1	0.021979	1	0.018978	1	0.47976	1	0.60713	1
Amp Peak 20(19q13.31)	38 (33%)	76	0.00081934	0.224	0.18961	1	0.3649	1	0.096609	1	0.099471	1	0.87442	1
Amp Peak 21(20q11.21)	57 (50%)	57	0.034623	1	0.33686	1	0.52255	1	0.041141	1	0.53201	1	0.72184	1
Amp Peak 22(Xq28)	34 (30%)	80	0.44759	1	0.50223	1	0.24762	1	0.91288	1	0.043333	1	0.13264	1
Del Peak  1(1p36.22)	18 (16%)	96	0.040503	1	0.02303	1	0.02004	1	0.0091068	1	0.47387	1	0.00020265	0.0561
Del Peak  2(2q22.1)	21 (18%)	93	0.44253	1	0.34078	1	0.13598	1	0.41911	1	0.91058	1	0.95253	1
Del Peak  3(2q37.1)	46 (40%)	68	0.68329	1	0.14556	1	0.0023653	0.634	0.026217	1	0.17181	1	0.07656	1
Del Peak  4(3p11.2)	47 (41%)	67	0.00037364	0.103	0.13723	1	0.56006	1	0.37357	1	0.12906	1	0.0070629	1
Del Peak  5(4q22.1)	34 (30%)	80	3.23e-08	9.3e-06	0.53412	1	0.071263	1	0.20989	1	0.19961	1	0.29656	1
Del Peak  6(4q35.2)	42 (37%)	72	3.0355e-06	0.000871	0.47885	1	0.067499	1	0.06382	1	0.57485	1	0.32327	1
Del Peak  7(5q15)	33 (29%)	81	0.017995	1	0.36816	1	0.66644	1	0.20989	1	0.21556	1	0.34619	1
Del Peak  8(6p24.3)	18 (16%)	96	0.10748	1	0.23922	1	0.065199	1	0.40398	1	0.4994	1	1	1
Del Peak  9(6p12.1)	19 (17%)	95	0.67937	1	0.35374	1	0.30279	1	0.13653	1	0.81894	1	0.1346	1
Del Peak 10(6q26)	43 (38%)	71	0.74634	1	0.16252	1	0.68542	1	0.66237	1	0.5447	1	0.49496	1
Del Peak 11(7q34)	26 (23%)	88	0.071819	1	0.92322	1	0.24239	1	0.023729	1	0.06827	1	0.19763	1
Del Peak 12(10q23.31)	35 (31%)	79	0.54141	1	0.57165	1	0.69351	1	0.36309	1	0.7391	1	0.86992	1
Del Peak 13(11q25)	68 (60%)	46	8.4316e-05	0.0238	0.62855	1	0.2447	1	0.21921	1	0.026739	1	0.44663	1
Del Peak 14(13q12.12)	45 (39%)	69	0.016116	1	0.51542	1	0.21209	1	0.47099	1	0.14092	1	0.16052	1
Del Peak 15(13q13.3)	47 (41%)	67	0.010231	1	0.24819	1	0.31822	1	0.50728	1	0.019671	1	0.10669	1
Del Peak 16(14q31.1)	18 (16%)	96	0.19651	1	0.059825	1	0.0061579	1	0.0018783	0.507	0.11775	1	0.030982	1
Del Peak 17(14q32.31)	21 (18%)	93	0.14105	1	0.00953	1	0.00054943	0.151	0.00017159	0.048	0.023958	1	0.0051992	1
Del Peak 18(16q11.2)	21 (18%)	93	0.46412	1	0.025024	1	0.58971	1	0.21699	1	0.13908	1	0.0018819	0.507
Del Peak 19(16q23.1)	24 (21%)	90	0.95559	1	0.019058	1	0.069738	1	0.12141	1	0.14254	1	0.00019738	0.0549
Del Peak 20(17p12)	38 (33%)	76	0.0011874	0.323	0.42626	1	0.25249	1	0.71557	1	0.093152	1	0.043952	1
Del Peak 21(17q25.3)	19 (17%)	95	0.030536	1	0.080281	1	0.017931	1	0.084849	1	0.03299	1	0.07383	1
Del Peak 22(19p13.3)	34 (30%)	80	0.085692	1	0.00070477	0.193	0.00015967	0.0449	0.0001821	0.0508	0.031766	1	3.5431e-05	0.0101
Del Peak 23(20p12.1)	13 (11%)	101	0.80251	1	0.9503	1	0.69341	1	1	1	0.43372	1	0.45101	1
Del Peak 24(21q21.1)	24 (21%)	90	0.0052237	1	0.19729	1	0.5244	1	0.12208	1	0.5265	1	0.80046	1
Del Peak 25(Xp11.3)	34 (30%)	80	0.095744	1	0.0065989	1	0.017062	1	0.035161	1	0.011857	1	0.0037528	1
Del Peak 26(Xq21.33)	27 (24%)	87	0.53232	1	0.037107	1	0.091798	1	0.14215	1	0.10126	1	0.0095519	1