Clinical Features MRNA_CNMF MRNA_CHIERARCHICAL CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL nMutated (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q VHL 138 (47%) 155 0.030683 1 0.051378 1 0.58179 1 0.3972 1 0.86437 1 0.31444 1 0.0074407 1 0.065378 1 0.19978 1 0.095948 1 SV2C 3 (1%) 290 NA NA NA NA 0.16935 1 0.010237 1 0.38439 1 0.42342 1 NA NA NA NA 0.19098 1 0.23366 1 PBRM1 107 (37%) 186 0.02106 1 0.073527 1 0.00020099 0.0454 0.00064546 0.144 0.16753 1 0.48655 1 0.00064883 0.144 0.082154 1 0.036522 1 0.015314 1 BAP1 27 (9%) 266 0.021229 1 0.011104 1 0.088296 1 0.0037601 0.827 0.038305 1 1 1 0.0014463 0.32 3.7596e-08 8.61e-06 0.00036891 0.083 7.9841e-08 1.82e-05 SETD2 34 (12%) 259 0.74671 1 1 1 0.099162 1 7.9986e-05 0.0182 0.1152 1 0.12755 1 0.33838 1 0.65465 1 0.12973 1 0.23029 1 KDM5C 18 (6%) 275 NA NA NA NA 0.351 1 0.2608 1 0.28485 1 0.052311 1 0.10545 1 0.67143 1 0.47055 1 0.7366 1 MTOR 24 (8%) 269 NA NA NA NA 0.63102 1 0.04303 1 0.010621 1 0.00056462 0.126 0.70669 1 0.32308 1 0.48836 1 0.68245 1 TP53 6 (2%) 287 NA NA NA NA 0.8749 1 0.53494 1 0.33395 1 0.40625 1 0.48126 1 0.24492 1 0.57923 1 0.283 1 PTEN 9 (3%) 284 0.16278 1 0.66484 1 1 1 0.31708 1 0.037542 1 0.73869 1 0.0083516 1 0.043716 1 0.25067 1 0.099617 1 EBPL 6 (2%) 287 NA NA NA NA 0.76935 1 0.79716 1 0.83599 1 0.51932 1 0.31771 1 0.17419 1 0.47829 1 0.23008 1 PIK3CA 10 (3%) 283 NA NA NA NA 0.31916 1 0.20486 1 0.030795 1 0.83688 1 0.91382 1 0.5863 1 0.55738 1 0.41019 1 TSPAN19 4 (1%) 289 NA NA NA NA 0.4732 1 NA NA 0.10097 1 0.39906 1 0.39114 1 0.45405 1 0.12985 1 0.098772 1 NBPF10 19 (6%) 274 0.53747 1 0.60169 1 0.59354 1 0.8722 1 0.37521 1 0.55485 1 0.3497 1 0.048355 1 0.17521 1 1 1 TOR1A 3 (1%) 290 NA NA NA NA 0.4636 1 NA NA 0.50136 1 0.29594 1 0.56286 1 1 1 0.84854 1 0.41358 1 MUC4 41 (14%) 252 0.78633 1 0.89239 1 0.08386 1 0.044024 1 0.16428 1 0.94249 1 0.047558 1 0.11374 1 0.079364 1 0.01169 1 UQCRFS1 3 (1%) 290 NA NA NA NA 0.25254 1 NA NA NA NA NA NA 0.2926 1 0.34078 1 0.49552 1 0.6442 1 WDR52 9 (3%) 284 NA NA NA NA 0.28349 1 0.48198 1 0.74513 1 0.89325 1 0.44773 1 0.50576 1 0.70516 1 0.26398 1 BAGE2 4 (1%) 289 NA NA NA NA 0.81641 1 0.11737 1 0.14736 1 0.24537 1 0.17113 1 0.091448 1 0.097875 1 0.013071 1 CNTNAP4 9 (3%) 284 NA NA NA NA 0.75759 1 0.3689 1 0.74513 1 0.45653 1 0.81537 1 0.62544 1 1 1 0.32591 1 CR1 10 (3%) 283 NA NA NA NA 1 1 0.27914 1 0.092391 1 0.90754 1 0.097767 1 0.4829 1 0.55738 1 0.10495 1 STAG2 9 (3%) 284 NA NA NA NA 0.078942 1 0.011913 1 0.037542 1 0.90754 1 0.35495 1 0.13025 1 0.25067 1 0.43802 1 MSN 4 (1%) 289 NA NA NA NA 0.58051 1 0.44449 1 0.26177 1 0.66935 1 0.28437 1 0.16996 1 0.19882 1 1 1 ABCB1 8 (3%) 285 NA NA NA NA 0.33324 1 0.6084 1 0.13979 1 0.030465 1 0.26512 1 0.16057 1 0.5138 1 0.077239 1 ADCY8 5 (2%) 288 NA NA NA NA 0.52705 1 0.10633 1 0.74184 1 1 1 0.84801 1 1 1 0.7019 1 0.43393 1 NPNT 6 (2%) 287 NA NA NA NA 0.667 1 0.50201 1 0.24627 1 1 1 0.33263 1 0.38171 1 0.92706 1 0.78952 1 OR5H1 3 (1%) 290 NA NA NA NA 1 1 NA NA 0.38439 1 0.039015 1 0.76824 1 0.72052 1 0.19098 1 0.035916 1 SPAM1 5 (2%) 288 NA NA NA NA 0.38571 1 NA NA 0.26916 1 0.5888 1 0.11642 1 0.11009 1 0.44118 1 0.77178 1 TPTE2 7 (2%) 286 NA NA NA NA 0.54932 1 0.62965 1 0.79669 1 0.88124 1 0.87597 1 0.87338 1 0.27632 1 0.81923 1