Molecular subtypes	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak 1(2q32.1)	20 (17%)	97	0.55	1	0.75	1	0.0023691	0.322	0.39727	1	0.94171	1	1	1	0.83172	1	0.43937	1
Amp Peak 2(3p14.1)	31 (26%)	86	1	1	0.53671	1	2.362e-17	3.76e-15	0.085751	1	0.0027933	0.373	1.7896e-06	0.000274	0.0053356	0.688	0.00022767	0.0335
Amp Peak 3(5q35.2)	15 (13%)	102	0.0625	1	0.14107	1	0.19968	1	0.036902	1	0.67759	1	0.05646	1	0.56565	1	0.045245	1
Amp Peak 4(6p12.3)	4 (3%)	113	NA	NA	NA	NA	0.43783	1	0.19892	1	0.11386	1	0.34956	1	0.16515	1	0.1857	1
Amp Peak 5(7q22.1)	68 (58%)	49	1	1	0.80769	1	3.5634e-09	5.52e-07	0.0079222	1	0.0017198	0.239	0.00051467	0.0746	0.013401	1	0.015724	1
Amp Peak 6(17q25.2)	80 (68%)	37	0.58462	1	1	1	2.9011e-06	0.000438	0.23313	1	0.27993	1	0.038824	1	0.82556	1	0.47722	1
Amp Peak 7(19p13.2)	14 (12%)	103	0.088462	1	0.61538	1	4.9414e-09	7.61e-07	0.16085	1	0.068314	1	0.7651	1	0.72175	1	0.68172	1
Amp Peak 8(19q13.11)	4 (3%)	113	NA	NA	NA	NA	0.68981	1	0.19892	1	0.20127	1	0.13	1	0.33103	1	0.47273	1
Del Peak  1(1p36.31)	25 (21%)	92	0.58462	1	1	1	2.2743e-06	0.000346	0.17222	1	0.031628	1	0.038175	1	0.25541	1	0.12366	1
Del Peak  2(2p11.2)	3 (3%)	114	NA	NA	NA	NA	0.88375	1	0.79138	1	NA	NA	NA	NA	0.027974	1	0.027313	1
Del Peak  3(2q37.3)	5 (4%)	112	1	1	NA	NA	0.3312	1	0.16318	1	0.68433	1	0.34956	1	0.70413	1	0.84031	1
Del Peak  4(3p22.1)	8 (7%)	109	0.4375	1	NA	NA	0.00086238	0.122	0.00069364	0.0985	0.020585	1	0.0041726	0.547	0.015887	1	0.1106	1
Del Peak  5(4q31.22)	13 (11%)	104	1	1	NA	NA	0.00030414	0.0444	0.00054316	0.0782	0.0068125	0.872	0.024041	1	0.58211	1	0.60957	1
Del Peak  6(5q35.2)	8 (7%)	109	1	1	NA	NA	0.31928	1	0.0018486	0.253	0.00061566	0.088	0.0011561	0.162	0.39362	1	0.11989	1
Del Peak  7(6q22.31)	13 (11%)	104	1	1	NA	NA	0.04888	1	0.11381	1	0.097644	1	0.17478	1	0.78723	1	0.33667	1
Del Peak  8(9p21.3)	18 (15%)	99	1	1	0.75	1	0.0047093	0.612	4.2683e-05	0.00636	3.4017e-05	0.0051	0.0018215	0.251	0.034061	1	0.092164	1
Del Peak  9(14q11.2)	26 (22%)	91	0.59615	1	0.16667	1	2.5599e-10	3.99e-08	0.30046	1	0.093411	1	0.17671	1	0.83534	1	0.95329	1
Del Peak 10(14q23.3)	25 (21%)	92	1	1	0.38462	1	2.1996e-12	3.48e-10	0.13853	1	0.035121	1	0.029534	1	0.71891	1	0.88568	1
Del Peak 11(14q32.2)	25 (21%)	92	1	1	0.38462	1	1.2883e-11	2.02e-09	0.30046	1	0.077507	1	0.064804	1	0.71891	1	0.88568	1
Del Peak 12(19q13.42)	10 (9%)	107	NA	NA	NA	NA	0.16275	1	0.88472	1	0.73212	1	0.2325	1	0.47091	1	0.43839	1
Del Peak 13(Xq21.31)	17 (15%)	100	1	1	NA	NA	0.00011833	0.0175	0.0026271	0.355	0.0027815	0.373	0.035429	1	0.76834	1	0.80565	1
Del Peak 14(Xq28)	16 (14%)	101	1	1	NA	NA	0.0036781	0.486	0.04502	1	0.043626	1	0.25271	1	0.71301	1	0.94117	1