Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Chi-square test_P	Chi-square test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	3 (2%)	188	0.0013537	0.152	0.1008	1	0.18603	1	0.55157	1	0.14728	1	0.09401	1
4p gain	4 (2%)	187	9.8227e-05	0.0114	0.38329	1	NA	NA	0.5502	1	0.1415	1	0.8252	1
4q gain	4 (2%)	187	9.8227e-05	0.0114	0.38329	1	NA	NA	0.5502	1	0.1415	1	0.8252	1
8p gain	20 (10%)	171	2.4411e-05	0.00293	0.050406	1	0.067358	1	0.012575	1	0.061086	1	0.061743	1
8q gain	21 (11%)	170	6.4215e-05	0.00751	0.099918	1	0.043386	1	0.012475	1	0.11461	1	0.093706	1
10q gain	3 (2%)	188	0.00097938	0.111	0.43923	1	0.18603	1	0.55157	1	0.79011	1	0.22665	1
11p gain	4 (2%)	187	3.3246e-15	4.29e-13	0.26282	1	0.46718	1	1	1	0.34299	1	0.073675	1
11q gain	7 (4%)	184	9.4225e-12	1.21e-09	0.010429	0.991	0.066765	1	0.42513	1	0.27751	1	0.37089	1
13q gain	3 (2%)	188	0.0035451	0.369	0.1008	1	0.18603	1	0.55157	1	0.45225	1	0.22665	1
17q gain	3 (2%)	188	6.8145e-06	0.000825	0.52909	1	1	1	0.55157	1	0.45225	1	0.22665	1
19p gain	5 (3%)	186	0.03425	1	0.77182	1	1	1	1	1	0.51075	1	0.52117	1
19q gain	5 (3%)	186	0.03425	1	0.77182	1	1	1	1	1	0.51075	1	0.52117	1
21q gain	8 (4%)	183	2.6227e-15	3.41e-13	0.45418	1	0.12442	1	1	1	0.19678	1	0.20026	1
22q gain	8 (4%)	183	0.0040585	0.414	0.0028766	0.311	0.034901	1	0.2687	1	0.16741	1	0.082186	1
5q loss	6 (3%)	185	6.0988e-11	7.75e-09	0.0021503	0.239	0.22428	1	0.66376	1	0.020246	1	0.021969	1
7p loss	15 (8%)	176	1.6107e-06	0.000197	4.4921e-05	0.00535	0.0027746	0.305	0.0027858	0.305	0.0084484	0.816	0.0071127	0.704
7q loss	18 (9%)	173	6.3349e-08	7.86e-06	5.1874e-07	6.38e-05	0.027182	1	0.021068	1	0.003374	0.358	0.0033834	0.358
12p loss	3 (2%)	188	0.019052	1	0.43117	1	0.61833	1	0.55157	1	0.79011	1	0.22665	1
17p loss	10 (5%)	181	2.1971e-10	2.77e-08	0.00018111	0.0206	0.07521	1	0.16676	1	0.014423	1	0.0049542	0.5
17q loss	5 (3%)	186	4.9413e-10	6.18e-08	0.0083279	0.816	0.22428	1	0.66376	1	0.0063228	0.632	0.00322	0.345
18p loss	5 (3%)	186	5.1738e-05	0.00611	0.0083279	0.816	1	1	1	1	0.34299	1	0.42313	1
18q loss	3 (2%)	188	0.0035451	0.369	0.1008	1	0.78607	1	1	1	0.084147	1	0.09401	1