This pipeline computes the correlation between significant copy number variation (cnv focal) genes and selected clinical features.
Testing the association between subtypes identified by 91 different clustering approaches and 21 clinical features across 4563 patients, 527 significant findings detected with Q value < 0.25.
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2 subtypes identified in current cancer cohort by 'Amp Peak 1(1p34.2) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', and 'TUMOR.STAGE'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 2(1p22.3) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', and 'TUMOR.STAGE'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 3(1q21.3) mutation analysis'. These subtypes correlate to 'Time to Death', 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGICSPREAD(M)', and 'TUMOR.STAGE'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 4(1q32.1) mutation analysis'. These subtypes correlate to 'Time to Death', 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGICSPREAD(M)', 'TOBACCOSMOKINGHISTORYINDICATOR', and 'NEOPLASM.DISEASESTAGE'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 5(1q44) mutation analysis'. These subtypes correlate to 'Time to Death', 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGICSPREAD(M)', and 'NEOPLASM.DISEASESTAGE'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 6(2p15) mutation analysis'. These subtypes correlate to 'AGE', 'PRIMARY.SITE.OF.DISEASE', 'KARNOFSKY.PERFORMANCE.SCORE', 'HISTOLOGICAL.TYPE', 'TUMOR.STAGE', 'RADIATIONS.RADIATION.REGIMENINDICATION', and 'NEOPLASM.DISEASESTAGE'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 7(2q31.2) mutation analysis'. These subtypes correlate to 'AGE', 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'TUMOR.STAGE', 'RADIATIONS.RADIATION.REGIMENINDICATION', and 'TOBACCOSMOKINGHISTORYINDICATOR'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 8(3q26.2) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'KARNOFSKY.PERFORMANCE.SCORE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGY.N', 'TUMOR.STAGE', 'RADIATIONS.RADIATION.REGIMENINDICATION', and 'NUMBERPACKYEARSSMOKED'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 9(4p16.3) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', and 'TUMOR.STAGE'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 10(4q12) mutation analysis'. These subtypes correlate to 'Time to Death', 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', and 'PATHOLOGY.T'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 11(5p15.33) mutation analysis'. These subtypes correlate to 'AGE', 'PRIMARY.SITE.OF.DISEASE', 'KARNOFSKY.PERFORMANCE.SCORE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'TUMOR.STAGE', 'RADIATIONS.RADIATION.REGIMENINDICATION', and 'TOBACCOSMOKINGHISTORYINDICATOR'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 12(5q35.3) mutation analysis'. These subtypes correlate to 'Time to Death', 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGY.N', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 13(6p22.3) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGICSPREAD(M)', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 14(6p21.1) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGICSPREAD(M)', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 15(6q21) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', and 'PATHOLOGY.T'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 16(7p11.2) mutation analysis'. These subtypes correlate to 'Time to Death', 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGY.N', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 17(7q36.3) mutation analysis'. These subtypes correlate to 'Time to Death', 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 18(8p11.23) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 19(8p11.21) mutation analysis'. These subtypes correlate to 'AGE', 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 20(8q24.21) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'KARNOFSKY.PERFORMANCE.SCORE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGY.N', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 21(9p13.3) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', and 'PATHOLOGY.T'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 22(10p15.1) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'TUMOR.STAGE', 'RADIATIONS.RADIATION.REGIMENINDICATION', and 'TOBACCOSMOKINGHISTORYINDICATOR'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 23(10q22.2) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', and 'TUMOR.STAGE'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 24(11q13.3) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGY.N', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 25(12p13.33) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 26(12p12.1) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 27(12q14.1) mutation analysis'. These subtypes correlate to 'Time to Death', 'AGE', 'PRIMARY.SITE.OF.DISEASE', and 'HISTOLOGICAL.TYPE'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 28(12q15) mutation analysis'. These subtypes correlate to 'AGE', 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 29(13q34) mutation analysis'. These subtypes correlate to 'AGE', 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGY.N', 'PATHOLOGICSPREAD(M)', 'TUMOR.STAGE', 'RADIATIONS.RADIATION.REGIMENINDICATION', and 'TOBACCOSMOKINGHISTORYINDICATOR'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 30(14q13.3) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGICSPREAD(M)', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 31(15q26.3) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 32(17q12) mutation analysis'. These subtypes correlate to 'AGE', 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', and 'PATHOLOGICSPREAD(M)'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 33(17q25.3) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGICSPREAD(M)', 'RADIATIONS.RADIATION.REGIMENINDICATION', and 'STOPPEDSMOKINGYEAR'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 34(18q11.2) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', and 'PATHOLOGY.T'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 35(19p13.2) mutation analysis'. These subtypes correlate to 'Time to Death', 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 36(19p13.12) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 37(19q12) mutation analysis'. These subtypes correlate to 'Time to Death', 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', and 'TUMOR.STAGE'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 38(20q11.21) mutation analysis'. These subtypes correlate to 'Time to Death', 'AGE', 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGY.N', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 39(20q13.2) mutation analysis'. These subtypes correlate to 'AGE', 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Amp Peak 40(Xq28) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGY.N', and 'TUMOR.STAGE'.
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2 subtypes identified in current cancer cohort by 'Del Peak 1(1p36.23) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', and 'NEOPLASM.DISEASESTAGE'.
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2 subtypes identified in current cancer cohort by 'Del Peak 2(1p36.11) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'TUMOR.STAGE', 'RADIATIONS.RADIATION.REGIMENINDICATION', 'TOBACCOSMOKINGHISTORYINDICATOR', 'NUMBER.OF.LYMPH.NODES', and 'NEOPLASM.DISEASESTAGE'.
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2 subtypes identified in current cancer cohort by 'Del Peak 3(1p13.2) mutation analysis'. These subtypes correlate to 'AGE', 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'RADIATIONS.RADIATION.REGIMENINDICATION', 'TOBACCOSMOKINGHISTORYINDICATOR', and 'NUMBER.OF.LYMPH.NODES'.
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2 subtypes identified in current cancer cohort by 'Del Peak 4(2q22.1) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', and 'TUMOR.STAGE'.
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2 subtypes identified in current cancer cohort by 'Del Peak 5(2q37.3) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', and 'TOBACCOSMOKINGHISTORYINDICATOR'.
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2 subtypes identified in current cancer cohort by 'Del Peak 6(3p26.2) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'TUMOR.STAGE', 'RADIATIONS.RADIATION.REGIMENINDICATION', and 'TOBACCOSMOKINGHISTORYINDICATOR'.
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2 subtypes identified in current cancer cohort by 'Del Peak 7(3p14.2) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'KARNOFSKY.PERFORMANCE.SCORE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'TUMOR.STAGE', 'RADIATIONS.RADIATION.REGIMENINDICATION', and 'TOBACCOSMOKINGHISTORYINDICATOR'.
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2 subtypes identified in current cancer cohort by 'Del Peak 8(4p16.3) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGY.N', 'TUMOR.STAGE', 'RADIATIONS.RADIATION.REGIMENINDICATION', 'STOPPEDSMOKINGYEAR', and 'TOBACCOSMOKINGHISTORYINDICATOR'.
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2 subtypes identified in current cancer cohort by 'Del Peak 9(4q22.1) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Del Peak 10(4q34.3) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Del Peak 11(5q11.2) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'KARNOFSKY.PERFORMANCE.SCORE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGY.N', 'TUMOR.STAGE', 'RADIATIONS.RADIATION.REGIMENINDICATION', 'NUMBERPACKYEARSSMOKED', 'TOBACCOSMOKINGHISTORYINDICATOR', and 'NEOPLASM.DISEASESTAGE'.
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2 subtypes identified in current cancer cohort by 'Del Peak 12(5q21.3) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'KARNOFSKY.PERFORMANCE.SCORE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGY.N', 'PATHOLOGICSPREAD(M)', 'RADIATIONS.RADIATION.REGIMENINDICATION', and 'TOBACCOSMOKINGHISTORYINDICATOR'.
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2 subtypes identified in current cancer cohort by 'Del Peak 13(6p25.3) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', and 'HISTOLOGICAL.TYPE'.
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2 subtypes identified in current cancer cohort by 'Del Peak 14(6q22.31) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', and 'TUMOR.STAGE'.
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2 subtypes identified in current cancer cohort by 'Del Peak 15(6q26) mutation analysis'. These subtypes correlate to 'AGE', 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', and 'TUMOR.STAGE'.
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2 subtypes identified in current cancer cohort by 'Del Peak 16(7p22.3) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', and 'TUMOR.STAGE'.
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2 subtypes identified in current cancer cohort by 'Del Peak 17(7q36.1) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', and 'PATHOLOGY.T'.
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2 subtypes identified in current cancer cohort by 'Del Peak 18(8p23.2) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'KARNOFSKY.PERFORMANCE.SCORE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGY.N', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Del Peak 19(8p21.2) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'KARNOFSKY.PERFORMANCE.SCORE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.N', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Del Peak 20(9p23) mutation analysis'. These subtypes correlate to 'Time to Death', 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', and 'PATHOLOGY.T'.
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2 subtypes identified in current cancer cohort by 'Del Peak 21(9p21.3) mutation analysis'. These subtypes correlate to 'Time to Death', 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'RADIATIONS.RADIATION.REGIMENINDICATION', 'LYMPH.NODE.METASTASIS', and 'NEOPLASM.DISEASESTAGE'.
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2 subtypes identified in current cancer cohort by 'Del Peak 22(9p21.3) mutation analysis'. These subtypes correlate to 'Time to Death', 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'RADIATIONS.RADIATION.REGIMENINDICATION', 'LYMPH.NODE.METASTASIS', and 'NEOPLASM.DISEASESTAGE'.
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2 subtypes identified in current cancer cohort by 'Del Peak 23(9q21.11) mutation analysis'. These subtypes correlate to 'AGE', 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Del Peak 24(9q34.3) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Del Peak 25(10p15.3) mutation analysis'. These subtypes correlate to 'Time to Death', 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Del Peak 26(10q23.31) mutation analysis'. These subtypes correlate to 'Time to Death', 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'RADIATIONS.RADIATION.REGIMENINDICATION', and 'YEAROFTOBACCOSMOKINGONSET'.
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2 subtypes identified in current cancer cohort by 'Del Peak 27(10q26.3) mutation analysis'. These subtypes correlate to 'Time to Death', 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Del Peak 28(11p15.5) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'TUMOR.STAGE', and 'TOBACCOSMOKINGHISTORYINDICATOR'.
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2 subtypes identified in current cancer cohort by 'Del Peak 29(11q23.1) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGY.N', and 'TUMOR.STAGE'.
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2 subtypes identified in current cancer cohort by 'Del Peak 30(11q25) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGY.N', and 'TUMOR.STAGE'.
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2 subtypes identified in current cancer cohort by 'Del Peak 31(12p13.1) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', and 'PATHOLOGICSPREAD(M)'.
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2 subtypes identified in current cancer cohort by 'Del Peak 32(12q23.1) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGICSPREAD(M)', and 'TUMOR.STAGE'.
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2 subtypes identified in current cancer cohort by 'Del Peak 33(12q24.33) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', and 'TUMOR.STAGE'.
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2 subtypes identified in current cancer cohort by 'Del Peak 34(13q11) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGICSPREAD(M)', 'TUMOR.STAGE', and 'TOBACCOSMOKINGHISTORYINDICATOR'.
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2 subtypes identified in current cancer cohort by 'Del Peak 35(13q14.2) mutation analysis'. These subtypes correlate to 'Time to Death', 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGICSPREAD(M)', 'TUMOR.STAGE', and 'TOBACCOSMOKINGHISTORYINDICATOR'.
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2 subtypes identified in current cancer cohort by 'Del Peak 36(14q24.1) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGY.N', and 'TUMOR.STAGE'.
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2 subtypes identified in current cancer cohort by 'Del Peak 37(15q11.2) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGY.N', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Del Peak 38(15q15.1) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGY.N', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Del Peak 39(16p13.3) mutation analysis'. These subtypes correlate to 'Time to Death', 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'TUMOR.STAGE', 'RADIATIONS.RADIATION.REGIMENINDICATION', and 'NEOPLASM.DISEASESTAGE'.
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2 subtypes identified in current cancer cohort by 'Del Peak 40(16q23.1) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'TUMOR.STAGE', 'RADIATIONS.RADIATION.REGIMENINDICATION', and 'NEOPLASM.DISEASESTAGE'.
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2 subtypes identified in current cancer cohort by 'Del Peak 41(17p12) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'KARNOFSKY.PERFORMANCE.SCORE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGY.N', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Del Peak 42(17q11.2) mutation analysis'. These subtypes correlate to 'AGE', 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Del Peak 43(18q21.2) mutation analysis'. These subtypes correlate to 'AGE', 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGY.N', 'PATHOLOGICSPREAD(M)', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Del Peak 44(18q23) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGY.N', 'PATHOLOGICSPREAD(M)', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Del Peak 45(19p13.3) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'PATHOLOGY.N', 'TUMOR.STAGE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Del Peak 46(19q13.32) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', and 'TUMOR.STAGE'.
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2 subtypes identified in current cancer cohort by 'Del Peak 47(19q13.43) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', and 'TUMOR.STAGE'.
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2 subtypes identified in current cancer cohort by 'Del Peak 48(20p12.1) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', and 'RADIATIONS.RADIATION.REGIMENINDICATION'.
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2 subtypes identified in current cancer cohort by 'Del Peak 49(21q11.2) mutation analysis'. These subtypes correlate to 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', 'PATHOLOGY.T', 'RADIATIONS.RADIATION.REGIMENINDICATION', and 'TOBACCOSMOKINGHISTORYINDICATOR'.
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2 subtypes identified in current cancer cohort by 'Del Peak 50(22q13.32) mutation analysis'. These subtypes correlate to 'Time to Death', 'PRIMARY.SITE.OF.DISEASE', 'GENDER', 'HISTOLOGICAL.TYPE', 'PATHOLOGICSPREAD(M)', 'TUMOR.STAGE', and 'COMPLETENESS.OF.RESECTION'.
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2 subtypes identified in current cancer cohort by 'Del Peak 51(Xp21.1) mutation analysis'. These subtypes correlate to 'Time to Death', 'PRIMARY.SITE.OF.DISEASE', 'HISTOLOGICAL.TYPE', and 'TUMOR.STAGE'.
Clinical Features |
Time to Death |
AGE |
PRIMARY SITE OF DISEASE |
GENDER |
KARNOFSKY PERFORMANCE SCORE |
HISTOLOGICAL TYPE |
PATHOLOGY T |
PATHOLOGY N |
PATHOLOGICSPREAD(M) |
TUMOR STAGE |
RADIATIONS RADIATION REGIMENINDICATION |
NUMBERPACKYEARSSMOKED | STOPPEDSMOKINGYEAR | TOBACCOSMOKINGHISTORYINDICATOR | YEAROFTOBACCOSMOKINGONSET |
DISTANT METASTASIS |
LYMPH NODE METASTASIS |
COMPLETENESS OF RESECTION |
NUMBER OF LYMPH NODES |
TUMOR STAGECODE |
NEOPLASM DISEASESTAGE |
Statistical Tests | logrank test | t-test | Chi-square test | Fisher's exact test | t-test | Chi-square test | Fisher's exact test | Fisher's exact test | Chi-square test | Fisher's exact test | Fisher's exact test | t-test | t-test | Chi-square test | t-test | Fisher's exact test | Chi-square test | Fisher's exact test | t-test | t-test | Chi-square test |
Amp Peak 1(1p34 2) |
0.0193 (1.00) |
0.508 (1.00) |
1.57e-118 (2.77e-115) |
2.69e-13 (4.16e-10) |
0.174 (1.00) |
1.32e-115 (2.32e-112) |
1.49e-06 (0.00213) |
0.646 (1.00) |
0.0056 (1.00) |
2.52e-16 (3.94e-13) |
0.0155 (1.00) |
0.999 (1.00) |
0.371 (1.00) |
0.414 (1.00) |
0.586 (1.00) |
0.168 (1.00) |
0.243 (1.00) |
0.0143 (1.00) |
0.979 (1.00) |
0.000248 (0.319) |
|
Amp Peak 2(1p22 3) |
0.612 (1.00) |
0.793 (1.00) |
2.49e-44 (4.12e-41) |
8.9e-12 (1.36e-08) |
0.288 (1.00) |
1.9e-41 (3.14e-38) |
5.91e-06 (0.00825) |
0.152 (1.00) |
0.0137 (1.00) |
0.000128 (0.167) |
0.719 (1.00) |
0.293 (1.00) |
0.0428 (1.00) |
0.0304 (1.00) |
0.202 (1.00) |
0.573 (1.00) |
0.68 (1.00) |
0.0808 (1.00) |
0.607 (1.00) |
0.391 (1.00) |
|
Amp Peak 3(1q21 3) |
1.78e-06 (0.00254) |
0.00837 (1.00) |
1.2e-202 (2.15e-199) |
1.78e-37 (2.94e-34) |
0.0255 (1.00) |
7.04e-110 (1.23e-106) |
1.13e-15 (1.76e-12) |
0.00784 (1.00) |
1e-05 (0.0139) |
1.62e-06 (0.00231) |
0.0272 (1.00) |
0.497 (1.00) |
0.11 (1.00) |
0.00392 (1.00) |
0.576 (1.00) |
0.369 (1.00) |
0.521 (1.00) |
0.342 (1.00) |
0.0234 (1.00) |
0.00826 (1.00) |
|
Amp Peak 4(1q32 1) |
1.36e-05 (0.0187) |
0.09 (1.00) |
3.02e-185 (5.4e-182) |
2.97e-29 (4.81e-26) |
0.0048 (1.00) |
3.76e-84 (6.45e-81) |
1.32e-16 (2.08e-13) |
0.0117 (1.00) |
0.000109 (0.144) |
0.0242 (1.00) |
0.698 (1.00) |
0.474 (1.00) |
0.14 (1.00) |
0.000111 (0.146) |
0.0478 (1.00) |
0.389 (1.00) |
0.0137 (1.00) |
0.433 (1.00) |
0.0201 (1.00) |
9.34e-14 (1.45e-10) |
|
Amp Peak 5(1q44) |
7.9e-07 (0.00113) |
0.16 (1.00) |
6.84e-183 (1.23e-179) |
1.15e-31 (1.87e-28) |
0.0146 (1.00) |
1.1e-79 (1.89e-76) |
1.29e-14 (2e-11) |
0.000505 (0.636) |
7.39e-05 (0.0978) |
0.00202 (1.00) |
0.0214 (1.00) |
0.696 (1.00) |
0.0499 (1.00) |
0.000623 (0.776) |
0.231 (1.00) |
0.828 (1.00) |
0.0053 (1.00) |
0.736 (1.00) |
0.0567 (1.00) |
1.33e-07 (0.000193) |
|
Amp Peak 6(2p15) |
0.856 (1.00) |
1.12e-06 (0.0016) |
1.81e-77 (3.1e-74) |
0.942 (1.00) |
0.000185 (0.239) |
1.27e-48 (2.11e-45) |
0.000548 (0.688) |
0.0148 (1.00) |
0.0488 (1.00) |
2.63e-05 (0.0356) |
2.25e-13 (3.48e-10) |
0.606 (1.00) |
0.199 (1.00) |
0.00191 (1.00) |
0.744 (1.00) |
0.204 (1.00) |
0.00627 (1.00) |
0.503 (1.00) |
0.0279 (1.00) |
3.34e-05 (0.0451) |
|
Amp Peak 7(2q31 2) |
0.225 (1.00) |
3.61e-06 (0.00509) |
5.69e-78 (9.74e-75) |
0.219 (1.00) |
0.2 (1.00) |
4.22e-34 (6.91e-31) |
0.00782 (1.00) |
0.0394 (1.00) |
0.0253 (1.00) |
1.98e-05 (0.0269) |
7.11e-13 (1.09e-09) |
0.328 (1.00) |
0.497 (1.00) |
7.91e-06 (0.011) |
0.499 (1.00) |
0.693 (1.00) |
0.834 (1.00) |
0.478 (1.00) |
0.00414 (1.00) |
0.773 (1.00) |
|
Amp Peak 8(3q26 2) |
0.064 (1.00) |
0.0167 (1.00) |
4.38e-244 (7.92e-241) |
0.26 (1.00) |
3.5e-05 (0.0472) |
2.22e-239 (4e-236) |
2.27e-21 (3.61e-18) |
2.73e-10 (4.11e-07) |
0.00604 (1.00) |
1.25e-24 (2.01e-21) |
1.04e-13 (1.62e-10) |
4.66e-06 (0.00655) |
0.00212 (1.00) |
0.0233 (1.00) |
0.533 (1.00) |
0.561 (1.00) |
0.142 (1.00) |
0.018 (1.00) |
0.0162 (1.00) |
0.000422 (0.533) |
|
Amp Peak 9(4p16 3) |
0.0235 (1.00) |
0.821 (1.00) |
2.11e-44 (3.5e-41) |
2.63e-05 (0.0357) |
0.256 (1.00) |
2.26e-47 (3.76e-44) |
1.15e-06 (0.00164) |
0.913 (1.00) |
0.063 (1.00) |
4.15e-08 (6.07e-05) |
0.147 (1.00) |
0.66 (1.00) |
0.604 (1.00) |
0.371 (1.00) |
0.331 (1.00) |
0.271 (1.00) |
0.235 (1.00) |
0.00107 (1.00) |
0.655 (1.00) |
0.00114 (1.00) |
|
Amp Peak 10(4q12) |
0.000118 (0.155) |
0.146 (1.00) |
7.25e-36 (1.19e-32) |
0.172 (1.00) |
0.4 (1.00) |
1.99e-35 (3.27e-32) |
1e-09 (1.5e-06) |
0.0486 (1.00) |
0.081 (1.00) |
0.127 (1.00) |
0.332 (1.00) |
0.95 (1.00) |
0.209 (1.00) |
0.0242 (1.00) |
0.0392 (1.00) |
0.257 (1.00) |
0.193 (1.00) |
0.321 (1.00) |
0.449 (1.00) |
0.0266 (1.00) |
|
Amp Peak 11(5p15 33) |
0.14 (1.00) |
1.15e-05 (0.0159) |
1.11e-158 (1.97e-155) |
0.161 (1.00) |
0.000167 (0.217) |
3.86e-116 (6.77e-113) |
5.27e-21 (8.39e-18) |
0.218 (1.00) |
0.00419 (1.00) |
1.98e-05 (0.027) |
9.74e-15 (1.52e-11) |
0.501 (1.00) |
0.00602 (1.00) |
1.16e-06 (0.00166) |
0.958 (1.00) |
0.845 (1.00) |
0.0415 (1.00) |
0.758 (1.00) |
0.305 (1.00) |
0.283 (1.00) |
|
Amp Peak 12(5q35 3) |
1.54e-05 (0.0212) |
0.577 (1.00) |
3.27e-156 (5.82e-153) |
0.761 (1.00) |
0.282 (1.00) |
1.55e-132 (2.74e-129) |
3.57e-17 (5.62e-14) |
3.43e-05 (0.0462) |
0.000235 (0.302) |
1.13e-06 (0.00162) |
2.19e-08 (3.22e-05) |
0.407 (1.00) |
0.262 (1.00) |
0.599 (1.00) |
0.392 (1.00) |
0.152 (1.00) |
0.577 (1.00) |
0.0378 (1.00) |
0.577 (1.00) |
0.0393 (1.00) |
|
Amp Peak 13(6p22 3) |
0.0268 (1.00) |
0.161 (1.00) |
2.71e-114 (4.74e-111) |
2.53e-12 (3.88e-09) |
0.403 (1.00) |
1.06e-89 (1.82e-86) |
0.00106 (1.00) |
0.0366 (1.00) |
8.97e-06 (0.0125) |
4.83e-12 (7.4e-09) |
9.67e-11 (1.47e-07) |
0.812 (1.00) |
0.106 (1.00) |
0.0273 (1.00) |
0.173 (1.00) |
0.666 (1.00) |
0.0913 (1.00) |
0.0216 (1.00) |
0.0555 (1.00) |
0.135 (1.00) |
|
Amp Peak 14(6p21 1) |
0.0127 (1.00) |
0.000581 (0.726) |
5.45e-75 (9.29e-72) |
4.37e-06 (0.00614) |
0.061 (1.00) |
7.53e-59 (1.27e-55) |
0.0145 (1.00) |
0.0251 (1.00) |
0.000124 (0.162) |
8.33e-07 (0.0012) |
1.41e-08 (2.08e-05) |
0.522 (1.00) |
0.671 (1.00) |
0.334 (1.00) |
0.208 (1.00) |
0.981 (1.00) |
0.379 (1.00) |
0.269 (1.00) |
0.182 (1.00) |
0.756 (1.00) |
|
Amp Peak 15(6q21) |
0.22 (1.00) |
0.0723 (1.00) |
5.88e-28 (9.51e-25) |
2.51e-07 (0.000365) |
0.644 (1.00) |
6.14e-24 (9.83e-21) |
0.000172 (0.223) |
0.19 (1.00) |
0.0854 (1.00) |
0.000208 (0.269) |
0.0421 (1.00) |
0.659 (1.00) |
0.462 (1.00) |
0.605 (1.00) |
0.69 (1.00) |
0.791 (1.00) |
0.792 (1.00) |
0.0239 (1.00) |
0.831 (1.00) |
0.136 (1.00) |
|
Amp Peak 16(7p11 2) |
0 (0) |
0.00102 (1.00) |
2.02e-154 (3.59e-151) |
1.49e-31 (2.42e-28) |
0.37 (1.00) |
5.96e-51 (9.97e-48) |
3.21e-09 (4.79e-06) |
6.53e-07 (0.000942) |
0.000754 (0.935) |
0.111 (1.00) |
2.81e-13 (4.33e-10) |
0.591 (1.00) |
0.235 (1.00) |
0.055 (1.00) |
0.0571 (1.00) |
0.165 (1.00) |
0.174 (1.00) |
0.0322 (1.00) |
0.112 (1.00) |
0.0139 (1.00) |
|
Amp Peak 17(7q36 3) |
0 (0) |
0.952 (1.00) |
8.19e-157 (1.46e-153) |
2.27e-12 (3.48e-09) |
0.0342 (1.00) |
2.41e-50 (4.03e-47) |
0.001 (1.00) |
0.0303 (1.00) |
0.000324 (0.413) |
2.54e-06 (0.00359) |
2.43e-08 (3.57e-05) |
0.781 (1.00) |
0.0144 (1.00) |
0.00655 (1.00) |
0.735 (1.00) |
0.625 (1.00) |
0.962 (1.00) |
0.164 (1.00) |
0.997 (1.00) |
0.524 (1.00) |
|
Amp Peak 18(8p11 23) |
0.00596 (1.00) |
0.00092 (1.00) |
2.97e-67 (5.02e-64) |
0.465 (1.00) |
0.000325 (0.414) |
1.66e-37 (2.73e-34) |
2.68e-09 (4e-06) |
0.295 (1.00) |
0.00438 (1.00) |
0.0221 (1.00) |
4.09e-05 (0.055) |
0.0883 (1.00) |
0.0445 (1.00) |
0.00832 (1.00) |
0.188 (1.00) |
0.36 (1.00) |
0.277 (1.00) |
0.525 (1.00) |
0.0852 (1.00) |
0.314 (1.00) |
|
Amp Peak 19(8p11 21) |
0.00022 (0.283) |
3.32e-06 (0.00469) |
3.94e-77 (6.74e-74) |
0.00443 (1.00) |
0.00174 (1.00) |
1.92e-46 (3.19e-43) |
6.99e-12 (1.07e-08) |
0.313 (1.00) |
0.0164 (1.00) |
0.000163 (0.212) |
1.77e-08 (2.61e-05) |
0.542 (1.00) |
0.0535 (1.00) |
0.00576 (1.00) |
0.0408 (1.00) |
0.746 (1.00) |
0.744 (1.00) |
0.0425 (1.00) |
0.51 (1.00) |
0.71 (1.00) |
|
Amp Peak 20(8q24 21) |
0.00185 (1.00) |
0.612 (1.00) |
2.35e-212 (4.23e-209) |
3.64e-09 (5.42e-06) |
8.85e-06 (0.0123) |
2.77e-129 (4.88e-126) |
1.83e-25 (2.94e-22) |
5.45e-11 (8.29e-08) |
0.00642 (1.00) |
3.83e-18 (6.04e-15) |
7.76e-22 (1.24e-18) |
0.828 (1.00) |
0.144 (1.00) |
0.0126 (1.00) |
0.477 (1.00) |
0.271 (1.00) |
0.0602 (1.00) |
0.0737 (1.00) |
0.0264 (1.00) |
0.454 (1.00) |
|
Amp Peak 21(9p13 3) |
0.804 (1.00) |
0.477 (1.00) |
4.48e-35 (7.34e-32) |
0.369 (1.00) |
0.29 (1.00) |
1.12e-32 (1.82e-29) |
1.07e-06 (0.00153) |
0.00316 (1.00) |
0.28 (1.00) |
0.000819 (1.00) |
0.442 (1.00) |
0.298 (1.00) |
0.121 (1.00) |
0.167 (1.00) |
0.547 (1.00) |
0.916 (1.00) |
0.156 (1.00) |
0.0713 (1.00) |
0.0408 (1.00) |
0.0526 (1.00) |
|
Amp Peak 22(10p15 1) |
0.014 (1.00) |
0.442 (1.00) |
3.98e-106 (6.93e-103) |
1.31e-23 (2.1e-20) |
0.383 (1.00) |
1.19e-65 (2e-62) |
5.9e-06 (0.00824) |
0.377 (1.00) |
0.101 (1.00) |
6.81e-16 (1.06e-12) |
1.77e-06 (0.00251) |
0.729 (1.00) |
0.169 (1.00) |
1.48e-08 (2.18e-05) |
0.189 (1.00) |
0.455 (1.00) |
0.754 (1.00) |
0.000588 (0.734) |
0.674 (1.00) |
0.106 (1.00) |
|
Amp Peak 23(10q22 2) |
0.00619 (1.00) |
0.957 (1.00) |
4.66e-77 (7.95e-74) |
7.43e-21 (1.18e-17) |
0.5 (1.00) |
1.85e-48 (3.09e-45) |
0.00293 (1.00) |
0.0485 (1.00) |
0.581 (1.00) |
1.38e-10 (2.1e-07) |
0.00228 (1.00) |
0.408 (1.00) |
0.135 (1.00) |
0.18 (1.00) |
0.286 (1.00) |
0.582 (1.00) |
0.581 (1.00) |
0.0806 (1.00) |
0.0556 (1.00) |
0.225 (1.00) |
|
Amp Peak 24(11q13 3) |
0.0264 (1.00) |
0.221 (1.00) |
1.03e-121 (1.81e-118) |
5.68e-05 (0.0758) |
0.14 (1.00) |
8.78e-67 (1.48e-63) |
1.44e-10 (2.17e-07) |
7.8e-06 (0.0109) |
0.0205 (1.00) |
1.77e-06 (0.00251) |
1.49e-05 (0.0204) |
0.283 (1.00) |
0.0387 (1.00) |
0.000904 (1.00) |
0.0618 (1.00) |
0.947 (1.00) |
0.435 (1.00) |
0.383 (1.00) |
0.0414 (1.00) |
0.2 (1.00) |
|
Amp Peak 25(12p13 33) |
0.157 (1.00) |
0.00191 (1.00) |
1.26e-74 (2.14e-71) |
0.866 (1.00) |
0.00106 (1.00) |
2.73e-52 (4.58e-49) |
9.39e-06 (0.013) |
0.635 (1.00) |
0.15 (1.00) |
2.09e-08 (3.07e-05) |
3.93e-13 (6.05e-10) |
0.293 (1.00) |
0.0309 (1.00) |
0.226 (1.00) |
0.773 (1.00) |
1 (1.00) |
0.307 (1.00) |
0.691 (1.00) |
0.353 (1.00) |
0.0697 (1.00) |
|
Amp Peak 26(12p12 1) |
0.0226 (1.00) |
0.000347 (0.442) |
1.5e-72 (2.56e-69) |
0.973 (1.00) |
0.00238 (1.00) |
6.28e-48 (1.05e-44) |
6.8e-05 (0.0902) |
0.982 (1.00) |
0.132 (1.00) |
1.25e-07 (0.000182) |
1.77e-10 (2.68e-07) |
0.201 (1.00) |
0.0204 (1.00) |
0.0681 (1.00) |
0.858 (1.00) |
0.974 (1.00) |
0.33 (1.00) |
0.972 (1.00) |
0.248 (1.00) |
0.057 (1.00) |
|
Amp Peak 27(12q14 1) |
9.67e-05 (0.128) |
5.92e-05 (0.0788) |
8.12e-23 (1.3e-19) |
0.128 (1.00) |
0.156 (1.00) |
4.4e-17 (6.92e-14) |
0.0794 (1.00) |
0.272 (1.00) |
0.502 (1.00) |
0.000252 (0.323) |
0.00851 (1.00) |
0.866 (1.00) |
0.0412 (1.00) |
0.359 (1.00) |
0.0928 (1.00) |
0.776 (1.00) |
0.0948 (1.00) |
0.732 (1.00) |
0.778 (1.00) |
0.0628 (1.00) |
|
Amp Peak 28(12q15) |
0.0125 (1.00) |
3.38e-05 (0.0456) |
5.44e-32 (8.86e-29) |
0.16 (1.00) |
0.0528 (1.00) |
5e-20 (7.94e-17) |
0.0128 (1.00) |
0.185 (1.00) |
0.273 (1.00) |
0.0128 (1.00) |
1.95e-06 (0.00277) |
0.988 (1.00) |
0.0253 (1.00) |
0.372 (1.00) |
0.462 (1.00) |
0.507 (1.00) |
0.0259 (1.00) |
0.802 (1.00) |
0.492 (1.00) |
0.0396 (1.00) |
|
Amp Peak 29(13q34) |
0.646 (1.00) |
4.91e-06 (0.00689) |
3.07e-173 (5.49e-170) |
0.0816 (1.00) |
0.195 (1.00) |
8.09e-136 (1.43e-132) |
5.86e-26 (9.45e-23) |
4.2e-08 (6.14e-05) |
3.51e-05 (0.0473) |
2.7e-10 (4.07e-07) |
3.06e-15 (4.76e-12) |
0.351 (1.00) |
0.456 (1.00) |
4.45e-07 (0.000642) |
0.272 (1.00) |
0.682 (1.00) |
0.0707 (1.00) |
0.00184 (1.00) |
0.655 (1.00) |
0.000727 (0.903) |
|
Amp Peak 30(14q13 3) |
0.512 (1.00) |
0.587 (1.00) |
5.23e-90 (9e-87) |
0.868 (1.00) |
0.012 (1.00) |
1.47e-72 (2.5e-69) |
2.55e-13 (3.93e-10) |
0.0155 (1.00) |
5.93e-10 (8.9e-07) |
0.666 (1.00) |
3.12e-06 (0.0044) |
0.49 (1.00) |
0.000445 (0.561) |
0.00251 (1.00) |
0.0185 (1.00) |
0.932 (1.00) |
0.273 (1.00) |
0.14 (1.00) |
0.0333 (1.00) |
0.0341 (1.00) |
|
Amp Peak 31(15q26 3) |
0.524 (1.00) |
0.448 (1.00) |
7e-52 (1.17e-48) |
0.0644 (1.00) |
0.00476 (1.00) |
2.23e-47 (3.72e-44) |
3.98e-10 (5.99e-07) |
0.0136 (1.00) |
0.131 (1.00) |
0.00626 (1.00) |
8.52e-08 (0.000124) |
0.569 (1.00) |
0.597 (1.00) |
0.000284 (0.362) |
0.661 (1.00) |
0.0584 (1.00) |
0.8 (1.00) |
0.042 (1.00) |
0.899 (1.00) |
0.959 (1.00) |
|
Amp Peak 32(17q12) |
0.597 (1.00) |
4.89e-05 (0.0654) |
5.37e-88 (9.22e-85) |
0.0297 (1.00) |
0.0566 (1.00) |
4.32e-70 (7.33e-67) |
4.25e-07 (0.000615) |
0.00142 (1.00) |
2.15e-06 (0.00305) |
0.0014 (1.00) |
0.000997 (1.00) |
0.367 (1.00) |
0.0353 (1.00) |
0.147 (1.00) |
0.692 (1.00) |
0.707 (1.00) |
0.0179 (1.00) |
0.138 (1.00) |
0.0896 (1.00) |
0.0998 (1.00) |
|
Amp Peak 33(17q25 3) |
0.601 (1.00) |
0.0591 (1.00) |
1.66e-92 (2.87e-89) |
0.00519 (1.00) |
0.0142 (1.00) |
9.16e-70 (1.55e-66) |
5.96e-08 (8.71e-05) |
0.000763 (0.944) |
2.45e-09 (3.66e-06) |
0.135 (1.00) |
4.41e-07 (0.000638) |
0.389 (1.00) |
6.2e-05 (0.0825) |
0.00881 (1.00) |
0.0665 (1.00) |
0.476 (1.00) |
0.637 (1.00) |
0.141 (1.00) |
0.776 (1.00) |
0.17 (1.00) |
|
Amp Peak 34(18q11 2) |
0.925 (1.00) |
0.00571 (1.00) |
2.58e-39 (4.26e-36) |
0.132 (1.00) |
0.00182 (1.00) |
5.99e-48 (9.98e-45) |
7.36e-12 (1.13e-08) |
0.0338 (1.00) |
0.000458 (0.578) |
0.0182 (1.00) |
0.146 (1.00) |
0.0491 (1.00) |
0.0013 (1.00) |
0.143 (1.00) |
0.825 (1.00) |
0.691 (1.00) |
0.0703 (1.00) |
0.625 (1.00) |
0.57 (1.00) |
0.442 (1.00) |
|
Amp Peak 35(19p13 2) |
5.21e-10 (7.83e-07) |
0.142 (1.00) |
2.23e-70 (3.79e-67) |
0.00638 (1.00) |
0.982 (1.00) |
2.29e-32 (3.73e-29) |
0.000471 (0.593) |
0.000978 (1.00) |
0.349 (1.00) |
1.83e-09 (2.73e-06) |
2.45e-11 (3.73e-08) |
0.616 (1.00) |
0.0253 (1.00) |
0.25 (1.00) |
0.642 (1.00) |
0.632 (1.00) |
0.952 (1.00) |
0.527 (1.00) |
0.244 (1.00) |
0.984 (1.00) |
|
Amp Peak 36(19p13 12) |
0.000609 (0.76) |
0.622 (1.00) |
3.73e-104 (6.49e-101) |
0.000411 (0.521) |
0.41 (1.00) |
9.15e-106 (1.59e-102) |
0.000753 (0.933) |
0.00177 (1.00) |
0.243 (1.00) |
2.83e-29 (4.59e-26) |
0.000105 (0.138) |
0.386 (1.00) |
0.00242 (1.00) |
0.485 (1.00) |
0.939 (1.00) |
0.0838 (1.00) |
0.26 (1.00) |
0.0388 (1.00) |
0.263 (1.00) |
0.829 (1.00) |
|
Amp Peak 37(19q12) |
0.000147 (0.192) |
0.0126 (1.00) |
4.38e-77 (7.48e-74) |
0.0952 (1.00) |
0.201 (1.00) |
3.02e-97 (5.23e-94) |
9.09e-06 (0.0126) |
0.00494 (1.00) |
0.158 (1.00) |
1.36e-16 (2.12e-13) |
0.468 (1.00) |
0.149 (1.00) |
0.00112 (1.00) |
0.00222 (1.00) |
0.136 (1.00) |
0.93 (1.00) |
0.416 (1.00) |
0.0884 (1.00) |
0.474 (1.00) |
0.0582 (1.00) |
|
Amp Peak 38(20q11 21) |
0.000183 (0.237) |
1.32e-15 (2.06e-12) |
1.59e-101 (2.76e-98) |
0.000106 (0.14) |
0.0748 (1.00) |
3.09e-110 (5.4e-107) |
4.98e-24 (7.98e-21) |
9.07e-06 (0.0126) |
0.00301 (1.00) |
5.57e-10 (8.37e-07) |
2.61e-05 (0.0353) |
0.00475 (1.00) |
0.436 (1.00) |
0.00502 (1.00) |
0.0595 (1.00) |
0.701 (1.00) |
0.338 (1.00) |
0.00117 (1.00) |
0.455 (1.00) |
0.000634 (0.789) |
|
Amp Peak 39(20q13 2) |
0.0675 (1.00) |
2.01e-08 (2.96e-05) |
5.34e-112 (9.33e-109) |
0.357 (1.00) |
0.696 (1.00) |
3.57e-118 (6.28e-115) |
3.43e-23 (5.49e-20) |
0.000201 (0.26) |
0.000472 (0.594) |
7.31e-13 (1.12e-09) |
6.59e-06 (0.00918) |
0.704 (1.00) |
0.211 (1.00) |
0.00151 (1.00) |
0.922 (1.00) |
0.477 (1.00) |
0.199 (1.00) |
0.00371 (1.00) |
0.988 (1.00) |
0.117 (1.00) |
|
Amp Peak 40(Xq28) |
0.985 (1.00) |
0.845 (1.00) |
2.16e-57 (3.64e-54) |
0.0115 (1.00) |
0.0387 (1.00) |
3.45e-32 (5.62e-29) |
1.11e-08 (1.64e-05) |
0.00012 (0.157) |
0.255 (1.00) |
6.86e-07 (0.000987) |
0.00039 (0.495) |
0.971 (1.00) |
0.382 (1.00) |
0.551 (1.00) |
0.896 (1.00) |
0.0216 (1.00) |
0.703 (1.00) |
0.111 (1.00) |
0.323 (1.00) |
0.0366 (1.00) |
|
Del Peak 1(1p36 23) |
0.796 (1.00) |
0.0885 (1.00) |
2.47e-38 (4.07e-35) |
0.438 (1.00) |
0.237 (1.00) |
1.86e-30 (3.03e-27) |
0.00492 (1.00) |
0.00677 (1.00) |
0.026 (1.00) |
0.000952 (1.00) |
0.128 (1.00) |
0.0175 (1.00) |
0.157 (1.00) |
0.00266 (1.00) |
0.356 (1.00) |
0.584 (1.00) |
0.0319 (1.00) |
0.178 (1.00) |
0.000784 (0.969) |
2e-05 (0.0272) |
|
Del Peak 2(1p36 11) |
0.0369 (1.00) |
0.00534 (1.00) |
3.87e-76 (6.59e-73) |
0.0267 (1.00) |
0.0176 (1.00) |
1.12e-45 (1.86e-42) |
0.00146 (1.00) |
0.00505 (1.00) |
0.0134 (1.00) |
1.72e-06 (0.00246) |
1.84e-11 (2.81e-08) |
0.00284 (1.00) |
0.234 (1.00) |
1.64e-05 (0.0225) |
0.678 (1.00) |
0.681 (1.00) |
0.00727 (1.00) |
0.00846 (1.00) |
4.47e-05 (0.06) |
6.09e-06 (0.00851) |
|
Del Peak 3(1p13 2) |
0.0604 (1.00) |
1.66e-05 (0.0227) |
2.36e-70 (4e-67) |
0.143 (1.00) |
0.00298 (1.00) |
5.09e-41 (8.4e-38) |
0.077 (1.00) |
0.00117 (1.00) |
0.33 (1.00) |
0.613 (1.00) |
9.22e-12 (1.41e-08) |
0.0105 (1.00) |
0.0805 (1.00) |
5.7e-05 (0.076) |
0.946 (1.00) |
0.298 (1.00) |
0.00459 (1.00) |
0.0176 (1.00) |
0.000131 (0.171) |
0.00158 (1.00) |
|
Del Peak 4(2q22 1) |
0.164 (1.00) |
0.784 (1.00) |
2.01e-45 (3.34e-42) |
0.000542 (0.681) |
0.042 (1.00) |
1.85e-35 (3.04e-32) |
9.01e-06 (0.0125) |
0.00149 (1.00) |
0.272 (1.00) |
1.02e-05 (0.0141) |
0.0171 (1.00) |
0.216 (1.00) |
0.00213 (1.00) |
0.0171 (1.00) |
0.152 (1.00) |
0.259 (1.00) |
0.687 (1.00) |
0.0827 (1.00) |
0.797 (1.00) |
0.356 (1.00) |
|
Del Peak 5(2q37 3) |
0.455 (1.00) |
0.138 (1.00) |
9.98e-68 (1.69e-64) |
0.00143 (1.00) |
0.284 (1.00) |
1.66e-41 (2.74e-38) |
0.00196 (1.00) |
0.068 (1.00) |
0.00508 (1.00) |
0.00173 (1.00) |
0.00284 (1.00) |
0.0378 (1.00) |
0.473 (1.00) |
2.11e-06 (0.00299) |
0.0323 (1.00) |
0.577 (1.00) |
0.233 (1.00) |
0.608 (1.00) |
0.711 (1.00) |
0.0191 (1.00) |
|
Del Peak 6(3p26 2) |
0.44 (1.00) |
0.04 (1.00) |
3.1e-311 (5.62e-308) |
3.76e-33 (6.15e-30) |
0.000411 (0.521) |
6.06e-202 (1.09e-198) |
1.2e-19 (1.9e-16) |
0.175 (1.00) |
0.0151 (1.00) |
1.28e-12 (1.96e-09) |
7.96e-25 (1.28e-21) |
0.000429 (0.542) |
0.00112 (1.00) |
2.37e-19 (3.75e-16) |
0.37 (1.00) |
0.0416 (1.00) |
0.999 (1.00) |
0.192 (1.00) |
0.00705 (1.00) |
0.385 (1.00) |
|
Del Peak 7(3p14 2) |
0.126 (1.00) |
0.642 (1.00) |
4.18e-251 (7.56e-248) |
4.14e-34 (6.79e-31) |
2.21e-05 (0.03) |
6.91e-199 (1.24e-195) |
1.37e-18 (2.17e-15) |
0.0749 (1.00) |
0.175 (1.00) |
1.18e-16 (1.86e-13) |
2.54e-20 (4.03e-17) |
0.000219 (0.282) |
0.00131 (1.00) |
5.04e-20 (7.99e-17) |
0.623 (1.00) |
0.317 (1.00) |
0.945 (1.00) |
0.0138 (1.00) |
0.0397 (1.00) |
0.903 (1.00) |
|
Del Peak 8(4p16 3) |
0.133 (1.00) |
0.207 (1.00) |
2.83e-56 (4.75e-53) |
0.02 (1.00) |
0.000698 (0.866) |
7.22e-60 (1.22e-56) |
7.24e-07 (0.00104) |
7.25e-05 (0.0962) |
0.29 (1.00) |
6.77e-05 (0.0899) |
0.000169 (0.219) |
0.0444 (1.00) |
0.000123 (0.161) |
0.000145 (0.189) |
0.835 (1.00) |
0.823 (1.00) |
0.941 (1.00) |
0.239 (1.00) |
0.0063 (1.00) |
0.168 (1.00) |
|
Del Peak 9(4q22 1) |
0.414 (1.00) |
0.0132 (1.00) |
3e-124 (5.28e-121) |
0.00213 (1.00) |
0.00512 (1.00) |
1.81e-107 (3.16e-104) |
3.18e-08 (4.67e-05) |
0.0101 (1.00) |
0.594 (1.00) |
3.84e-22 (6.12e-19) |
1.46e-14 (2.27e-11) |
0.043 (1.00) |
0.0394 (1.00) |
0.0157 (1.00) |
0.0501 (1.00) |
0.7 (1.00) |
0.28 (1.00) |
0.21 (1.00) |
0.0016 (1.00) |
0.288 (1.00) |
|
Del Peak 10(4q34 3) |
0.0152 (1.00) |
0.0503 (1.00) |
1.89e-127 (3.34e-124) |
0.0116 (1.00) |
0.0021 (1.00) |
9.53e-120 (1.68e-116) |
1.46e-08 (2.16e-05) |
0.0148 (1.00) |
0.692 (1.00) |
4.37e-16 (6.84e-13) |
4.43e-11 (6.74e-08) |
0.00417 (1.00) |
0.0867 (1.00) |
0.00578 (1.00) |
0.998 (1.00) |
0.635 (1.00) |
0.571 (1.00) |
0.434 (1.00) |
0.0165 (1.00) |
0.261 (1.00) |
|
Del Peak 11(5q11 2) |
0.679 (1.00) |
0.0557 (1.00) |
1.28e-171 (2.28e-168) |
0.504 (1.00) |
5.77e-05 (0.0769) |
2.01e-152 (3.57e-149) |
3.08e-17 (4.86e-14) |
6.37e-05 (0.0848) |
0.00178 (1.00) |
9.26e-06 (0.0128) |
9.02e-14 (1.4e-10) |
4.61e-06 (0.00648) |
0.000266 (0.34) |
3.29e-05 (0.0445) |
0.481 (1.00) |
0.303 (1.00) |
0.026 (1.00) |
0.208 (1.00) |
0.0836 (1.00) |
1.73e-05 (0.0236) |
|
Del Peak 12(5q21 3) |
0.761 (1.00) |
0.00777 (1.00) |
2.24e-178 (4e-175) |
0.92 (1.00) |
1.22e-05 (0.0168) |
9.1e-152 (1.61e-148) |
7.7e-16 (1.2e-12) |
3.6e-05 (0.0484) |
4.68e-05 (0.0627) |
0.000819 (1.00) |
1.55e-14 (2.41e-11) |
0.000572 (0.717) |
0.00479 (1.00) |
6.54e-06 (0.00913) |
0.1 (1.00) |
0.355 (1.00) |
0.214 (1.00) |
0.57 (1.00) |
0.701 (1.00) |
0.000268 (0.342) |
|
Del Peak 13(6p25 3) |
0.018 (1.00) |
0.768 (1.00) |
4.71e-16 (7.37e-13) |
6.41e-05 (0.0852) |
0.0199 (1.00) |
1.37e-13 (2.12e-10) |
0.296 (1.00) |
0.649 (1.00) |
0.675 (1.00) |
0.193 (1.00) |
0.0825 (1.00) |
0.624 (1.00) |
0.745 (1.00) |
0.639 (1.00) |
0.218 (1.00) |
0.877 (1.00) |
0.507 (1.00) |
0.0456 (1.00) |
0.818 (1.00) |
0.253 (1.00) |
|
Del Peak 14(6q22 31) |
0.00258 (1.00) |
0.000639 (0.795) |
9.36e-93 (1.62e-89) |
0.0332 (1.00) |
0.183 (1.00) |
6.04e-98 (1.05e-94) |
0.000134 (0.175) |
0.767 (1.00) |
0.0541 (1.00) |
3.25e-09 (4.84e-06) |
0.00302 (1.00) |
0.0954 (1.00) |
0.531 (1.00) |
0.391 (1.00) |
0.0413 (1.00) |
0.524 (1.00) |
0.304 (1.00) |
0.175 (1.00) |
0.0672 (1.00) |
0.0506 (1.00) |
|
Del Peak 15(6q26) |
0.0366 (1.00) |
5.89e-06 (0.00823) |
5.42e-104 (9.42e-101) |
0.00239 (1.00) |
0.596 (1.00) |
6.56e-108 (1.14e-104) |
0.000244 (0.314) |
0.743 (1.00) |
0.0906 (1.00) |
1.13e-12 (1.74e-09) |
0.00379 (1.00) |
0.142 (1.00) |
0.773 (1.00) |
0.149 (1.00) |
0.255 (1.00) |
0.974 (1.00) |
0.364 (1.00) |
0.359 (1.00) |
0.218 (1.00) |
0.0618 (1.00) |
|
Del Peak 16(7p22 3) |
0.417 (1.00) |
0.00316 (1.00) |
1.43e-143 (2.54e-140) |
1.29e-27 (2.08e-24) |
0.224 (1.00) |
8.12e-127 (1.43e-123) |
3.28e-07 (0.000475) |
0.479 (1.00) |
0.0051 (1.00) |
5.75e-29 (9.32e-26) |
0.000975 (1.00) |
0.0973 (1.00) |
0.0506 (1.00) |
0.292 (1.00) |
0.674 (1.00) |
0.856 (1.00) |
0.703 (1.00) |
0.182 (1.00) |
0.0849 (1.00) |
0.00924 (1.00) |
|
Del Peak 17(7q36 1) |
0.654 (1.00) |
0.284 (1.00) |
1.07e-56 (1.8e-53) |
0.00472 (1.00) |
0.00143 (1.00) |
1.29e-52 (2.16e-49) |
8.06e-11 (1.22e-07) |
0.0591 (1.00) |
0.0148 (1.00) |
0.17 (1.00) |
0.254 (1.00) |
0.162 (1.00) |
0.62 (1.00) |
0.463 (1.00) |
0.588 (1.00) |
0.243 (1.00) |
0.924 (1.00) |
0.421 (1.00) |
0.447 (1.00) |
0.316 (1.00) |
|
Del Peak 18(8p23 2) |
0.0387 (1.00) |
0.000402 (0.51) |
9.18e-132 (1.62e-128) |
0.0358 (1.00) |
7.72e-05 (0.102) |
6.41e-91 (1.1e-87) |
1.44e-05 (0.0198) |
1.37e-08 (2.03e-05) |
0.791 (1.00) |
6.41e-08 (9.35e-05) |
2.07e-21 (3.29e-18) |
0.00697 (1.00) |
0.525 (1.00) |
0.0421 (1.00) |
0.728 (1.00) |
0.603 (1.00) |
0.0304 (1.00) |
0.0515 (1.00) |
0.00204 (1.00) |
0.797 (1.00) |
|
Del Peak 19(8p21 2) |
0.034 (1.00) |
0.000956 (1.00) |
1.38e-135 (2.44e-132) |
0.000212 (0.274) |
1.6e-05 (0.0219) |
1.04e-93 (1.79e-90) |
0.00134 (1.00) |
1.99e-08 (2.94e-05) |
0.29 (1.00) |
1.36e-10 (2.07e-07) |
1.62e-22 (2.59e-19) |
0.142 (1.00) |
0.579 (1.00) |
0.362 (1.00) |
0.845 (1.00) |
0.629 (1.00) |
0.101 (1.00) |
0.219 (1.00) |
0.00114 (1.00) |
0.633 (1.00) |
|
Del Peak 20(9p23) |
0 (0) |
0.0108 (1.00) |
2.13e-93 (3.68e-90) |
2.44e-10 (3.68e-07) |
0.0554 (1.00) |
2.4e-86 (4.12e-83) |
2.04e-10 (3.08e-07) |
0.0535 (1.00) |
0.174 (1.00) |
0.00735 (1.00) |
0.445 (1.00) |
0.0903 (1.00) |
0.612 (1.00) |
0.197 (1.00) |
0.0944 (1.00) |
0.0877 (1.00) |
0.000965 (1.00) |
0.627 (1.00) |
0.006 (1.00) |
0.000549 (0.689) |
|
Del Peak 21(9p21 3) |
0 (0) |
0.0142 (1.00) |
4.81e-163 (8.59e-160) |
4.97e-22 (7.93e-19) |
0.0171 (1.00) |
4.9e-110 (8.56e-107) |
7.47e-17 (1.17e-13) |
0.0552 (1.00) |
0.295 (1.00) |
0.148 (1.00) |
4.55e-07 (0.000656) |
0.0351 (1.00) |
0.211 (1.00) |
0.138 (1.00) |
0.000374 (0.476) |
0.0828 (1.00) |
4.59e-05 (0.0615) |
0.83 (1.00) |
0.0202 (1.00) |
4.69e-06 (0.00658) |
|
Del Peak 22(9p21 3) |
0 (0) |
0.0148 (1.00) |
1.33e-172 (2.37e-169) |
9.41e-26 (1.51e-22) |
0.00513 (1.00) |
1.84e-116 (3.23e-113) |
6.88e-17 (1.08e-13) |
0.00571 (1.00) |
0.366 (1.00) |
0.00882 (1.00) |
3.32e-07 (0.000481) |
0.0662 (1.00) |
0.394 (1.00) |
0.103 (1.00) |
0.00217 (1.00) |
0.0931 (1.00) |
1.99e-05 (0.0271) |
0.893 (1.00) |
0.0179 (1.00) |
2.47e-06 (0.00349) |
|
Del Peak 23(9q21 11) |
0.177 (1.00) |
6.47e-07 (0.000932) |
4.31e-84 (7.39e-81) |
0.0617 (1.00) |
0.0286 (1.00) |
2.98e-72 (5.07e-69) |
1.53e-10 (2.31e-07) |
0.012 (1.00) |
0.0197 (1.00) |
6.01e-09 (8.93e-06) |
2.53e-13 (3.92e-10) |
0.106 (1.00) |
0.466 (1.00) |
0.134 (1.00) |
0.0382 (1.00) |
0.269 (1.00) |
0.282 (1.00) |
0.149 (1.00) |
0.259 (1.00) |
0.0999 (1.00) |
|
Del Peak 24(9q34 3) |
0.648 (1.00) |
0.000249 (0.319) |
1.7e-96 (2.93e-93) |
0.00058 (0.725) |
0.13 (1.00) |
2.59e-82 (4.43e-79) |
1.11e-09 (1.66e-06) |
0.00119 (1.00) |
0.0397 (1.00) |
5.06e-12 (7.74e-09) |
4.15e-14 (6.44e-11) |
0.0524 (1.00) |
0.41 (1.00) |
0.172 (1.00) |
0.00225 (1.00) |
1 (1.00) |
0.0225 (1.00) |
0.282 (1.00) |
0.438 (1.00) |
0.208 (1.00) |
|
Del Peak 25(10p15 3) |
0 (0) |
0.932 (1.00) |
2.23e-243 (4.03e-240) |
5.68e-26 (9.15e-23) |
0.0752 (1.00) |
1.75e-48 (2.92e-45) |
4.88e-08 (7.14e-05) |
0.000858 (1.00) |
0.553 (1.00) |
0.187 (1.00) |
6.01e-35 (9.86e-32) |
0.174 (1.00) |
0.16 (1.00) |
0.00884 (1.00) |
0.0861 (1.00) |
0.361 (1.00) |
0.751 (1.00) |
0.716 (1.00) |
0.0142 (1.00) |
0.698 (1.00) |
|
Del Peak 26(10q23 31) |
0 (0) |
0.513 (1.00) |
5.45e-192 (9.79e-189) |
2e-11 (3.05e-08) |
0.241 (1.00) |
2.68e-46 (4.46e-43) |
0.017 (1.00) |
0.0903 (1.00) |
0.833 (1.00) |
0.0111 (1.00) |
7.31e-30 (1.19e-26) |
0.137 (1.00) |
0.828 (1.00) |
0.128 (1.00) |
4.3e-05 (0.0578) |
0.619 (1.00) |
0.184 (1.00) |
0.161 (1.00) |
0.472 (1.00) |
0.0446 (1.00) |
|
Del Peak 27(10q26 3) |
0 (0) |
0.488 (1.00) |
1.08e-206 (1.95e-203) |
4.45e-13 (6.85e-10) |
0.525 (1.00) |
1.8e-40 (2.97e-37) |
0.0432 (1.00) |
0.293 (1.00) |
0.658 (1.00) |
0.192 (1.00) |
7.57e-34 (1.24e-30) |
0.171 (1.00) |
0.649 (1.00) |
0.156 (1.00) |
0.0167 (1.00) |
0.336 (1.00) |
0.363 (1.00) |
0.476 (1.00) |
0.144 (1.00) |
0.297 (1.00) |
|
Del Peak 28(11p15 5) |
0.00662 (1.00) |
0.666 (1.00) |
1.64e-115 (2.87e-112) |
3.54e-05 (0.0476) |
0.00883 (1.00) |
1.03e-121 (1.82e-118) |
1.72e-10 (2.59e-07) |
0.000578 (0.723) |
0.119 (1.00) |
2.77e-16 (4.33e-13) |
0.00313 (1.00) |
0.0756 (1.00) |
0.274 (1.00) |
0.000141 (0.184) |
0.726 (1.00) |
0.669 (1.00) |
0.14 (1.00) |
0.301 (1.00) |
0.000385 (0.489) |
0.0338 (1.00) |
|
Del Peak 29(11q23 1) |
0.556 (1.00) |
0.897 (1.00) |
9.65e-101 (1.67e-97) |
0.000149 (0.193) |
0.0136 (1.00) |
1.38e-53 (2.32e-50) |
8.21e-10 (1.23e-06) |
4.19e-09 (6.23e-06) |
0.509 (1.00) |
4.35e-06 (0.00611) |
0.21 (1.00) |
0.293 (1.00) |
0.438 (1.00) |
0.0967 (1.00) |
0.0788 (1.00) |
0.459 (1.00) |
0.169 (1.00) |
0.943 (1.00) |
0.0142 (1.00) |
0.0323 (1.00) |
|
Del Peak 30(11q25) |
0.884 (1.00) |
0.136 (1.00) |
9.57e-91 (1.65e-87) |
8.64e-05 (0.114) |
0.0106 (1.00) |
1.04e-58 (1.74e-55) |
4.93e-11 (7.5e-08) |
1.17e-09 (1.76e-06) |
0.159 (1.00) |
1.55e-05 (0.0213) |
0.281 (1.00) |
0.171 (1.00) |
0.938 (1.00) |
0.0832 (1.00) |
0.274 (1.00) |
0.459 (1.00) |
0.26 (1.00) |
0.516 (1.00) |
0.00461 (1.00) |
0.0093 (1.00) |
|
Del Peak 31(12p13 1) |
0.272 (1.00) |
0.213 (1.00) |
1.45e-20 (2.31e-17) |
9.28e-08 (0.000135) |
0.978 (1.00) |
1.21e-35 (1.99e-32) |
0.23 (1.00) |
0.412 (1.00) |
3.65e-06 (0.00514) |
0.135 (1.00) |
0.69 (1.00) |
0.0175 (1.00) |
0.804 (1.00) |
0.579 (1.00) |
0.0274 (1.00) |
0.102 (1.00) |
0.245 (1.00) |
0.117 (1.00) |
0.529 (1.00) |
0.231 (1.00) |
|
Del Peak 32(12q23 1) |
0.888 (1.00) |
0.178 (1.00) |
5e-53 (8.38e-50) |
5.49e-09 (8.15e-06) |
0.627 (1.00) |
2.57e-59 (4.32e-56) |
1.75e-05 (0.0239) |
0.0875 (1.00) |
3.07e-05 (0.0415) |
1.69e-05 (0.0232) |
0.00106 (1.00) |
0.116 (1.00) |
0.294 (1.00) |
0.612 (1.00) |
0.523 (1.00) |
0.883 (1.00) |
0.407 (1.00) |
0.529 (1.00) |
0.22 (1.00) |
0.166 (1.00) |
|
Del Peak 33(12q24 33) |
0.0548 (1.00) |
0.41 (1.00) |
9.81e-60 (1.66e-56) |
2.37e-08 (3.49e-05) |
0.153 (1.00) |
9.68e-64 (1.64e-60) |
1.21e-06 (0.00173) |
0.0585 (1.00) |
0.00306 (1.00) |
3.32e-07 (0.000481) |
0.00971 (1.00) |
0.692 (1.00) |
0.951 (1.00) |
0.919 (1.00) |
0.185 (1.00) |
0.634 (1.00) |
0.497 (1.00) |
0.203 (1.00) |
0.177 (1.00) |
0.726 (1.00) |
|
Del Peak 34(13q11) |
0.000281 (0.359) |
0.811 (1.00) |
1.15e-154 (2.05e-151) |
0.154 (1.00) |
0.000326 (0.415) |
3.77e-153 (6.68e-150) |
2.22e-29 (3.61e-26) |
0.00896 (1.00) |
5.38e-06 (0.00753) |
2.6e-07 (0.000377) |
0.31 (1.00) |
0.00695 (1.00) |
0.00936 (1.00) |
6.36e-09 (9.44e-06) |
0.583 (1.00) |
0.938 (1.00) |
0.945 (1.00) |
0.258 (1.00) |
0.231 (1.00) |
0.311 (1.00) |
|
Del Peak 35(13q14 2) |
3.13e-06 (0.00442) |
0.0401 (1.00) |
2.43e-161 (4.33e-158) |
0.0104 (1.00) |
0.0012 (1.00) |
2.68e-158 (4.78e-155) |
1.25e-28 (2.03e-25) |
0.00585 (1.00) |
1.36e-05 (0.0188) |
4.05e-08 (5.94e-05) |
0.781 (1.00) |
0.0185 (1.00) |
0.0139 (1.00) |
0.000134 (0.175) |
0.956 (1.00) |
0.977 (1.00) |
0.658 (1.00) |
0.333 (1.00) |
0.589 (1.00) |
0.396 (1.00) |
|
Del Peak 36(14q24 1) |
0.00139 (1.00) |
0.738 (1.00) |
3.5e-50 (5.84e-47) |
0.843 (1.00) |
0.991 (1.00) |
3.47e-53 (5.82e-50) |
3.49e-05 (0.0471) |
8.6e-05 (0.114) |
0.000694 (0.862) |
9.79e-09 (1.45e-05) |
0.000238 (0.306) |
0.625 (1.00) |
0.324 (1.00) |
0.153 (1.00) |
0.678 (1.00) |
0.824 (1.00) |
0.201 (1.00) |
0.356 (1.00) |
0.625 (1.00) |
0.369 (1.00) |
|
Del Peak 37(15q11 2) |
0.0667 (1.00) |
0.00127 (1.00) |
6.2e-74 (1.06e-70) |
8.72e-06 (0.0121) |
0.0512 (1.00) |
1.4e-81 (2.39e-78) |
2.02e-07 (0.000294) |
1.56e-06 (0.00222) |
0.00627 (1.00) |
4.36e-09 (6.48e-06) |
2.48e-06 (0.00351) |
0.902 (1.00) |
0.475 (1.00) |
0.174 (1.00) |
0.228 (1.00) |
0.126 (1.00) |
0.655 (1.00) |
0.322 (1.00) |
0.0827 (1.00) |
0.394 (1.00) |
|
Del Peak 38(15q15 1) |
0.02 (1.00) |
0.005 (1.00) |
7.53e-92 (1.3e-88) |
5.85e-08 (8.55e-05) |
0.115 (1.00) |
4.97e-103 (8.63e-100) |
3.86e-08 (5.66e-05) |
1.3e-06 (0.00186) |
0.00473 (1.00) |
1.55e-15 (2.41e-12) |
5.22e-05 (0.0698) |
0.759 (1.00) |
0.358 (1.00) |
0.116 (1.00) |
0.528 (1.00) |
0.394 (1.00) |
0.712 (1.00) |
0.696 (1.00) |
0.18 (1.00) |
0.806 (1.00) |
|
Del Peak 39(16p13 3) |
1.85e-05 (0.0252) |
0.00806 (1.00) |
8.46e-131 (1.5e-127) |
0.0127 (1.00) |
0.111 (1.00) |
2.73e-96 (4.72e-93) |
0.00125 (1.00) |
0.258 (1.00) |
0.216 (1.00) |
2.9e-13 (4.46e-10) |
2.53e-09 (3.77e-06) |
0.41 (1.00) |
0.314 (1.00) |
0.000897 (1.00) |
0.316 (1.00) |
0.0116 (1.00) |
0.135 (1.00) |
0.416 (1.00) |
0.158 (1.00) |
8.49e-09 (1.26e-05) |
|
Del Peak 40(16q23 1) |
0.00572 (1.00) |
0.425 (1.00) |
1.03e-249 (1.85e-246) |
1.35e-71 (2.3e-68) |
0.222 (1.00) |
2e-189 (3.59e-186) |
7.26e-11 (1.1e-07) |
0.049 (1.00) |
0.0292 (1.00) |
4.29e-33 (7.01e-30) |
4.83e-05 (0.0646) |
0.235 (1.00) |
0.354 (1.00) |
0.0022 (1.00) |
0.334 (1.00) |
0.0172 (1.00) |
0.00896 (1.00) |
0.000421 (0.533) |
0.817 (1.00) |
1.18e-09 (1.76e-06) |
|
Del Peak 41(17p12) |
0.0431 (1.00) |
0.247 (1.00) |
1.18e-243 (2.13e-240) |
3e-26 (4.84e-23) |
2.4e-05 (0.0326) |
1.94e-191 (3.48e-188) |
2.66e-13 (4.11e-10) |
2.29e-07 (0.000332) |
0.00243 (1.00) |
9.14e-30 (1.48e-26) |
3.15e-28 (5.09e-25) |
0.26 (1.00) |
0.42 (1.00) |
0.443 (1.00) |
0.662 (1.00) |
0.9 (1.00) |
0.0223 (1.00) |
0.189 (1.00) |
0.0113 (1.00) |
0.0193 (1.00) |
|
Del Peak 42(17q11 2) |
0.858 (1.00) |
1.08e-05 (0.0149) |
4.51e-260 (8.16e-257) |
2.56e-50 (4.28e-47) |
0.243 (1.00) |
2.51e-232 (4.52e-229) |
0.00096 (1.00) |
0.727 (1.00) |
0.398 (1.00) |
1.47e-59 (2.47e-56) |
1.65e-09 (2.47e-06) |
0.0626 (1.00) |
0.0751 (1.00) |
0.0464 (1.00) |
0.771 (1.00) |
0.115 (1.00) |
0.632 (1.00) |
0.00277 (1.00) |
0.305 (1.00) |
0.00344 (1.00) |
|
Del Peak 43(18q21 2) |
0.3 (1.00) |
2.01e-06 (0.00285) |
7.33e-159 (1.31e-155) |
0.0634 (1.00) |
0.00639 (1.00) |
9.15e-112 (1.6e-108) |
3.15e-24 (5.06e-21) |
2.33e-10 (3.52e-07) |
1.36e-06 (0.00195) |
4.15e-17 (6.53e-14) |
3.94e-26 (6.35e-23) |
0.2 (1.00) |
0.413 (1.00) |
0.246 (1.00) |
0.0214 (1.00) |
0.303 (1.00) |
0.0378 (1.00) |
0.00191 (1.00) |
0.00623 (1.00) |
0.0469 (1.00) |
|
Del Peak 44(18q23) |
0.405 (1.00) |
0.000287 (0.366) |
3.55e-162 (6.33e-159) |
0.125 (1.00) |
0.0108 (1.00) |
8.86e-116 (1.55e-112) |
4.49e-23 (7.18e-20) |
3.7e-10 (5.57e-07) |
7.29e-05 (0.0966) |
1.51e-19 (2.39e-16) |
9.54e-25 (1.53e-21) |
0.291 (1.00) |
0.0992 (1.00) |
0.126 (1.00) |
0.0102 (1.00) |
0.282 (1.00) |
0.0321 (1.00) |
0.0062 (1.00) |
0.00142 (1.00) |
0.182 (1.00) |
|
Del Peak 45(19p13 3) |
0.0982 (1.00) |
0.856 (1.00) |
1.3e-268 (2.35e-265) |
1.38e-24 (2.22e-21) |
0.0652 (1.00) |
4.58e-237 (8.25e-234) |
1.31e-17 (2.07e-14) |
1.11e-05 (0.0153) |
0.000617 (0.769) |
1.59e-41 (2.64e-38) |
6.69e-19 (1.06e-15) |
0.471 (1.00) |
0.38 (1.00) |
0.301 (1.00) |
0.0718 (1.00) |
0.575 (1.00) |
0.752 (1.00) |
0.00209 (1.00) |
0.119 (1.00) |
0.754 (1.00) |
|
Del Peak 46(19q13 32) |
0.0052 (1.00) |
0.334 (1.00) |
1.15e-114 (2.02e-111) |
1.42e-07 (0.000206) |
0.717 (1.00) |
3.8e-108 (6.63e-105) |
7.12e-07 (0.00103) |
0.0504 (1.00) |
0.0125 (1.00) |
2.06e-19 (3.27e-16) |
0.0239 (1.00) |
0.489 (1.00) |
0.369 (1.00) |
0.0218 (1.00) |
0.0481 (1.00) |
0.446 (1.00) |
0.294 (1.00) |
0.0083 (1.00) |
0.0854 (1.00) |
0.139 (1.00) |
|
Del Peak 47(19q13 43) |
0.00547 (1.00) |
0.622 (1.00) |
1.25e-103 (2.17e-100) |
4.29e-07 (0.000621) |
0.914 (1.00) |
1.91e-95 (3.3e-92) |
2.7e-06 (0.00382) |
0.0171 (1.00) |
0.133 (1.00) |
8.42e-17 (1.32e-13) |
0.0411 (1.00) |
0.0537 (1.00) |
0.307 (1.00) |
0.0146 (1.00) |
0.102 (1.00) |
0.548 (1.00) |
0.691 (1.00) |
0.00182 (1.00) |
0.0446 (1.00) |
0.588 (1.00) |
|
Del Peak 48(20p12 1) |
0.332 (1.00) |
0.511 (1.00) |
6.45e-36 (1.06e-32) |
0.264 (1.00) |
0.916 (1.00) |
1.04e-29 (1.69e-26) |
0.000251 (0.321) |
0.000795 (0.983) |
0.028 (1.00) |
0.00895 (1.00) |
2.44e-05 (0.0331) |
0.268 (1.00) |
0.367 (1.00) |
0.21 (1.00) |
0.0293 (1.00) |
0.886 (1.00) |
0.953 (1.00) |
0.213 (1.00) |
0.61 (1.00) |
0.211 (1.00) |
|
Del Peak 49(21q11 2) |
0.232 (1.00) |
0.00179 (1.00) |
3.01e-68 (5.09e-65) |
0.02 (1.00) |
0.00565 (1.00) |
5.01e-47 (8.32e-44) |
5.18e-06 (0.00726) |
0.000231 (0.298) |
0.0748 (1.00) |
0.0838 (1.00) |
3.58e-11 (5.45e-08) |
0.0301 (1.00) |
0.00137 (1.00) |
0.000113 (0.149) |
0.373 (1.00) |
0.771 (1.00) |
0.226 (1.00) |
0.46 (1.00) |
0.164 (1.00) |
0.0112 (1.00) |
|
Del Peak 50(22q13 32) |
0.000113 (0.149) |
0.301 (1.00) |
3.08e-173 (5.51e-170) |
1.14e-27 (1.84e-24) |
0.136 (1.00) |
1.36e-190 (2.45e-187) |
0.000546 (0.685) |
0.00341 (1.00) |
0.000141 (0.184) |
1.3e-43 (2.15e-40) |
0.0696 (1.00) |
0.0552 (1.00) |
0.748 (1.00) |
0.103 (1.00) |
0.0413 (1.00) |
0.954 (1.00) |
0.171 (1.00) |
8.1e-05 (0.107) |
0.273 (1.00) |
0.705 (1.00) |
|
Del Peak 51(Xp21 1) |
1.62e-05 (0.0222) |
0.24 (1.00) |
2.08e-114 (3.65e-111) |
0.0208 (1.00) |
0.14 (1.00) |
2.13e-103 (3.69e-100) |
0.00429 (1.00) |
0.014 (1.00) |
0.963 (1.00) |
1.74e-18 (2.75e-15) |
0.00377 (1.00) |
0.34 (1.00) |
0.319 (1.00) |
0.678 (1.00) |
0.838 (1.00) |
0.776 (1.00) |
0.868 (1.00) |
0.0515 (1.00) |
0.183 (1.00) |
0.0262 (1.00) |
Cluster Labels | AMP PEAK 1(1P34.2) MUTATED | AMP PEAK 1(1P34.2) WILD-TYPE |
---|---|---|
Number of samples | 807 | 3756 |
P value = 1.57e-118 (Chi-square test), Q value = 2.8e-115
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 1(1P34.2) MUTATED | 35 | 77 | 123 | 22 | 50 | 46 | 16 | 153 | 1 | 276 | 1 | 7 |
AMP PEAK 1(1P34.2) WILD-TYPE | 90 | 467 | 723 | 390 | 397 | 273 | 477 | 509 | 1 | 272 | 1 | 152 |
P value = 2.69e-13 (Fisher's exact test), Q value = 4.2e-10
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
AMP PEAK 1(1P34.2) MUTATED | 599 | 208 |
AMP PEAK 1(1P34.2) WILD-TYPE | 2282 | 1474 |
P value = 1.32e-115 (Chi-square test), Q value = 2.3e-112
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 1(1P34.2) MUTATED | 20 | 2 | 14 | 46 | 16 | 4 | 15 | 66 | 3 | 0 | 5 | 0 | 1 | 0 | 4 | 0 | 0 | 1 | 1 | 52 | 5 | 1 | 5 | 2 | 278 | 31 | 0 | 2 |
AMP PEAK 1(1P34.2) WILD-TYPE | 336 | 52 | 336 | 273 | 477 | 6 | 60 | 139 | 4 | 3 | 10 | 2 | 2 | 2 | 9 | 1 | 1 | 0 | 1 | 263 | 13 | 6 | 138 | 11 | 274 | 48 | 1 | 18 |
P value = 1.49e-06 (Fisher's exact test), Q value = 0.0021
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 1(1P34.2) MUTATED | 47 | 105 | 51 | 29 |
AMP PEAK 1(1P34.2) WILD-TYPE | 419 | 527 | 643 | 180 |
P value = 2.52e-16 (Fisher's exact test), Q value = 3.9e-13
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 1(1P34.2) MUTATED | 100 | 65 | 257 | 81 |
AMP PEAK 1(1P34.2) WILD-TYPE | 612 | 433 | 624 | 342 |
Cluster Labels | AMP PEAK 2(1P22.3) MUTATED | AMP PEAK 2(1P22.3) WILD-TYPE |
---|---|---|
Number of samples | 770 | 3793 |
P value = 2.49e-44 (Chi-square test), Q value = 4.1e-41
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 2(1P22.3) MUTATED | 34 | 74 | 186 | 19 | 74 | 38 | 18 | 152 | 1 | 163 | 0 | 11 |
AMP PEAK 2(1P22.3) WILD-TYPE | 91 | 470 | 660 | 393 | 373 | 281 | 475 | 510 | 1 | 385 | 2 | 148 |
P value = 8.9e-12 (Fisher's exact test), Q value = 1.4e-08
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
AMP PEAK 2(1P22.3) MUTATED | 568 | 202 |
AMP PEAK 2(1P22.3) WILD-TYPE | 2313 | 1480 |
P value = 1.9e-41 (Chi-square test), Q value = 3.1e-38
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 2(1P22.3) MUTATED | 17 | 2 | 47 | 38 | 18 | 4 | 18 | 58 | 2 | 0 | 8 | 0 | 2 | 0 | 1 | 1 | 0 | 0 | 1 | 56 | 4 | 1 | 9 | 2 | 164 | 23 | 0 | 2 |
AMP PEAK 2(1P22.3) WILD-TYPE | 339 | 52 | 303 | 281 | 475 | 6 | 57 | 147 | 5 | 3 | 7 | 2 | 1 | 2 | 12 | 0 | 1 | 1 | 1 | 259 | 14 | 6 | 134 | 11 | 388 | 56 | 1 | 18 |
P value = 5.91e-06 (Fisher's exact test), Q value = 0.0083
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 2(1P22.3) MUTATED | 45 | 103 | 53 | 29 |
AMP PEAK 2(1P22.3) WILD-TYPE | 421 | 529 | 641 | 180 |
P value = 0.000128 (Fisher's exact test), Q value = 0.17
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 2(1P22.3) MUTATED | 90 | 62 | 175 | 61 |
AMP PEAK 2(1P22.3) WILD-TYPE | 622 | 436 | 706 | 362 |
Cluster Labels | AMP PEAK 3(1Q21.3) MUTATED | AMP PEAK 3(1Q21.3) WILD-TYPE |
---|---|---|
Number of samples | 1998 | 2565 |
P value = 1.78e-06 (logrank test), Q value = 0.0025
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 4296 | 1401 | 0.0 - 224.0 (14.9) |
AMP PEAK 3(1Q21.3) MUTATED | 1897 | 557 | 0.0 - 224.0 (15.3) |
AMP PEAK 3(1Q21.3) WILD-TYPE | 2399 | 844 | 0.0 - 210.9 (14.3) |
P value = 1.2e-202 (Chi-square test), Q value = 2.2e-199
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 3(1Q21.3) MUTATED | 63 | 92 | 609 | 79 | 193 | 87 | 60 | 421 | 0 | 344 | 2 | 45 |
AMP PEAK 3(1Q21.3) WILD-TYPE | 62 | 452 | 237 | 333 | 254 | 232 | 433 | 241 | 2 | 204 | 0 | 114 |
P value = 1.78e-37 (Fisher's exact test), Q value = 2.9e-34
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
AMP PEAK 3(1Q21.3) MUTATED | 1467 | 531 |
AMP PEAK 3(1Q21.3) WILD-TYPE | 1414 | 1151 |
P value = 7.04e-110 (Chi-square test), Q value = 1.2e-106
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 3(1Q21.3) MUTATED | 72 | 7 | 136 | 87 | 60 | 9 | 58 | 147 | 6 | 0 | 13 | 2 | 2 | 1 | 9 | 1 | 0 | 1 | 1 | 168 | 8 | 3 | 41 | 3 | 346 | 49 | 0 | 2 |
AMP PEAK 3(1Q21.3) WILD-TYPE | 284 | 47 | 214 | 232 | 433 | 1 | 17 | 58 | 1 | 3 | 2 | 0 | 1 | 1 | 4 | 0 | 1 | 0 | 1 | 147 | 10 | 4 | 102 | 10 | 206 | 30 | 1 | 18 |
P value = 1.13e-15 (Fisher's exact test), Q value = 1.8e-12
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 3(1Q21.3) MUTATED | 135 | 293 | 174 | 75 |
AMP PEAK 3(1Q21.3) WILD-TYPE | 331 | 339 | 520 | 134 |
P value = 1e-05 (Chi-square test), Q value = 0.014
nPatients | M0 | M1 | M1A | M1B | MX |
---|---|---|---|---|---|
ALL | 1424 | 168 | 9 | 3 | 165 |
AMP PEAK 3(1Q21.3) MUTATED | 469 | 48 | 3 | 0 | 86 |
AMP PEAK 3(1Q21.3) WILD-TYPE | 955 | 120 | 6 | 3 | 79 |
P value = 1.62e-06 (Fisher's exact test), Q value = 0.0023
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 3(1Q21.3) MUTATED | 267 | 175 | 418 | 152 |
AMP PEAK 3(1Q21.3) WILD-TYPE | 445 | 323 | 463 | 271 |
Cluster Labels | AMP PEAK 4(1Q32.1) MUTATED | AMP PEAK 4(1Q32.1) WILD-TYPE |
---|---|---|
Number of samples | 1998 | 2565 |
P value = 1.36e-05 (logrank test), Q value = 0.019
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 4296 | 1401 | 0.0 - 224.0 (14.9) |
AMP PEAK 4(1Q32.1) MUTATED | 1895 | 553 | 0.0 - 223.4 (15.1) |
AMP PEAK 4(1Q32.1) WILD-TYPE | 2401 | 848 | 0.0 - 224.0 (14.6) |
P value = 3.02e-185 (Chi-square test), Q value = 5.4e-182
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 4(1Q32.1) MUTATED | 43 | 148 | 652 | 86 | 187 | 87 | 58 | 416 | 0 | 270 | 2 | 47 |
AMP PEAK 4(1Q32.1) WILD-TYPE | 82 | 396 | 194 | 326 | 260 | 232 | 435 | 246 | 2 | 278 | 0 | 112 |
P value = 2.97e-29 (Fisher's exact test), Q value = 4.8e-26
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
AMP PEAK 4(1Q32.1) MUTATED | 1442 | 556 |
AMP PEAK 4(1Q32.1) WILD-TYPE | 1439 | 1126 |
P value = 3.76e-84 (Chi-square test), Q value = 6.4e-81
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 4(1Q32.1) MUTATED | 79 | 7 | 145 | 87 | 58 | 9 | 54 | 150 | 6 | 0 | 13 | 2 | 2 | 0 | 9 | 1 | 0 | 1 | 2 | 164 | 6 | 3 | 42 | 4 | 272 | 36 | 0 | 4 |
AMP PEAK 4(1Q32.1) WILD-TYPE | 277 | 47 | 205 | 232 | 435 | 1 | 21 | 55 | 1 | 3 | 2 | 0 | 1 | 2 | 4 | 0 | 1 | 0 | 0 | 151 | 12 | 4 | 101 | 9 | 280 | 43 | 1 | 16 |
P value = 1.32e-16 (Fisher's exact test), Q value = 2.1e-13
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 4(1Q32.1) MUTATED | 133 | 296 | 174 | 76 |
AMP PEAK 4(1Q32.1) WILD-TYPE | 333 | 336 | 520 | 133 |
P value = 0.000109 (Chi-square test), Q value = 0.14
nPatients | M0 | M1 | M1A | M1B | MX |
---|---|---|---|---|---|
ALL | 1424 | 168 | 9 | 3 | 165 |
AMP PEAK 4(1Q32.1) MUTATED | 472 | 52 | 3 | 0 | 84 |
AMP PEAK 4(1Q32.1) WILD-TYPE | 952 | 116 | 6 | 3 | 81 |
P value = 0.000111 (Chi-square test), Q value = 0.15
nPatients | 1 | 2 | 3 | 4 | 5 | CURRENT REFORMED SMOKER FOR < OR = 15 YEARS | CURRENT REFORMED SMOKER FOR > 15 YEARS | CURRENT SMOKER | LIFELONG NON-SMOKER |
---|---|---|---|---|---|---|---|---|---|
ALL | 28 | 23 | 37 | 29 | 2 | 355 | 217 | 250 | 128 |
AMP PEAK 4(1Q32.1) MUTATED | 6 | 7 | 14 | 13 | 0 | 199 | 114 | 124 | 47 |
AMP PEAK 4(1Q32.1) WILD-TYPE | 22 | 16 | 23 | 16 | 2 | 156 | 103 | 126 | 81 |
P value = 9.34e-14 (Chi-square test), Q value = 1.4e-10
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE TIS | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 72 | 62 | 7 | 43 | 287 | 186 | 42 | 124 | 25 | 41 | 59 | 1 | 16 |
AMP PEAK 4(1Q32.1) MUTATED | 47 | 42 | 6 | 16 | 225 | 147 | 14 | 96 | 21 | 35 | 31 | 1 | 12 |
AMP PEAK 4(1Q32.1) WILD-TYPE | 25 | 20 | 1 | 27 | 62 | 39 | 28 | 28 | 4 | 6 | 28 | 0 | 4 |
Cluster Labels | AMP PEAK 5(1Q44) MUTATED | AMP PEAK 5(1Q44) WILD-TYPE |
---|---|---|
Number of samples | 1904 | 2659 |
P value = 7.9e-07 (logrank test), Q value = 0.0011
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 4296 | 1401 | 0.0 - 224.0 (14.9) |
AMP PEAK 5(1Q44) MUTATED | 1809 | 524 | 0.0 - 223.4 (15.3) |
AMP PEAK 5(1Q44) WILD-TYPE | 2487 | 877 | 0.0 - 224.0 (14.3) |
P value = 6.84e-183 (Chi-square test), Q value = 1.2e-179
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 5(1Q44) MUTATED | 48 | 93 | 614 | 85 | 181 | 94 | 55 | 400 | 2 | 283 | 2 | 46 |
AMP PEAK 5(1Q44) WILD-TYPE | 77 | 451 | 232 | 327 | 266 | 225 | 438 | 262 | 0 | 265 | 0 | 113 |
P value = 1.15e-31 (Fisher's exact test), Q value = 1.9e-28
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
AMP PEAK 5(1Q44) MUTATED | 1389 | 515 |
AMP PEAK 5(1Q44) WILD-TYPE | 1492 | 1167 |
P value = 1.1e-79 (Chi-square test), Q value = 1.9e-76
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 5(1Q44) MUTATED | 76 | 9 | 140 | 94 | 55 | 9 | 49 | 142 | 6 | 0 | 12 | 2 | 2 | 0 | 9 | 1 | 0 | 1 | 2 | 162 | 5 | 3 | 41 | 4 | 287 | 36 | 0 | 3 |
AMP PEAK 5(1Q44) WILD-TYPE | 280 | 45 | 210 | 225 | 438 | 1 | 26 | 63 | 1 | 3 | 3 | 0 | 1 | 2 | 4 | 0 | 1 | 0 | 0 | 153 | 13 | 4 | 102 | 9 | 265 | 43 | 1 | 17 |
P value = 1.29e-14 (Fisher's exact test), Q value = 2e-11
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 5(1Q44) MUTATED | 129 | 281 | 172 | 82 |
AMP PEAK 5(1Q44) WILD-TYPE | 337 | 351 | 522 | 127 |
P value = 7.39e-05 (Chi-square test), Q value = 0.098
nPatients | M0 | M1 | M1A | M1B | MX |
---|---|---|---|---|---|
ALL | 1424 | 168 | 9 | 3 | 165 |
AMP PEAK 5(1Q44) MUTATED | 448 | 55 | 4 | 0 | 82 |
AMP PEAK 5(1Q44) WILD-TYPE | 976 | 113 | 5 | 3 | 83 |
P value = 1.33e-07 (Chi-square test), Q value = 0.00019
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE TIS | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 72 | 62 | 7 | 43 | 287 | 186 | 42 | 124 | 25 | 41 | 59 | 1 | 16 |
AMP PEAK 5(1Q44) MUTATED | 48 | 38 | 6 | 19 | 210 | 140 | 14 | 87 | 21 | 32 | 32 | 1 | 11 |
AMP PEAK 5(1Q44) WILD-TYPE | 24 | 24 | 1 | 24 | 77 | 46 | 28 | 37 | 4 | 9 | 27 | 0 | 5 |
Cluster Labels | AMP PEAK 6(2P15) MUTATED | AMP PEAK 6(2P15) WILD-TYPE |
---|---|---|
Number of samples | 1056 | 3507 |
P value = 1.12e-06 (t-test), Q value = 0.0016
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 4507 | 61.9 (12.6) |
AMP PEAK 6(2P15) MUTATED | 1038 | 63.4 (11.8) |
AMP PEAK 6(2P15) WILD-TYPE | 3469 | 61.4 (12.9) |
P value = 1.81e-77 (Chi-square test), Q value = 3.1e-74
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 6(2P15) MUTATED | 47 | 30 | 148 | 73 | 81 | 70 | 69 | 284 | 0 | 218 | 0 | 36 |
AMP PEAK 6(2P15) WILD-TYPE | 78 | 514 | 698 | 339 | 366 | 249 | 424 | 378 | 2 | 330 | 2 | 123 |
P value = 0.000185 (t-test), Q value = 0.24
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 640 | 73.6 (23.9) |
AMP PEAK 6(2P15) MUTATED | 111 | 62.3 (36.0) |
AMP PEAK 6(2P15) WILD-TYPE | 529 | 75.9 (19.8) |
P value = 1.27e-48 (Chi-square test), Q value = 2.1e-45
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 6(2P15) MUTATED | 67 | 6 | 44 | 70 | 69 | 3 | 27 | 66 | 6 | 0 | 3 | 2 | 1 | 0 | 4 | 1 | 0 | 0 | 0 | 169 | 5 | 2 | 36 | 0 | 218 | 32 | 0 | 2 |
AMP PEAK 6(2P15) WILD-TYPE | 289 | 48 | 306 | 249 | 424 | 7 | 48 | 139 | 1 | 3 | 12 | 0 | 2 | 2 | 9 | 0 | 1 | 1 | 2 | 146 | 13 | 5 | 107 | 13 | 334 | 47 | 1 | 18 |
P value = 2.63e-05 (Fisher's exact test), Q value = 0.036
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 6(2P15) MUTATED | 178 | 142 | 307 | 104 |
AMP PEAK 6(2P15) WILD-TYPE | 534 | 356 | 574 | 319 |
P value = 2.25e-13 (Fisher's exact test), Q value = 3.5e-10
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 6(2P15) MUTATED | 114 | 942 |
AMP PEAK 6(2P15) WILD-TYPE | 712 | 2795 |
P value = 3.34e-05 (Chi-square test), Q value = 0.045
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE TIS | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 72 | 62 | 7 | 43 | 287 | 186 | 42 | 124 | 25 | 41 | 59 | 1 | 16 |
AMP PEAK 6(2P15) MUTATED | 9 | 8 | 0 | 13 | 52 | 31 | 10 | 25 | 0 | 14 | 25 | 0 | 4 |
AMP PEAK 6(2P15) WILD-TYPE | 63 | 54 | 7 | 30 | 235 | 155 | 32 | 99 | 25 | 27 | 34 | 1 | 12 |
Cluster Labels | AMP PEAK 7(2Q31.2) MUTATED | AMP PEAK 7(2Q31.2) WILD-TYPE |
---|---|---|
Number of samples | 907 | 3656 |
P value = 3.61e-06 (t-test), Q value = 0.0051
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 4507 | 61.9 (12.6) |
AMP PEAK 7(2Q31.2) MUTATED | 891 | 63.5 (11.6) |
AMP PEAK 7(2Q31.2) WILD-TYPE | 3616 | 61.4 (12.8) |
P value = 5.69e-78 (Chi-square test), Q value = 9.7e-75
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 7(2Q31.2) MUTATED | 19 | 28 | 82 | 70 | 72 | 67 | 75 | 223 | 0 | 230 | 1 | 40 |
AMP PEAK 7(2Q31.2) WILD-TYPE | 106 | 516 | 764 | 342 | 375 | 252 | 418 | 439 | 2 | 318 | 1 | 119 |
P value = 4.22e-34 (Chi-square test), Q value = 6.9e-31
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 7(2Q31.2) MUTATED | 64 | 6 | 36 | 67 | 75 | 3 | 32 | 64 | 4 | 0 | 3 | 0 | 1 | 0 | 5 | 1 | 0 | 1 | 1 | 106 | 3 | 2 | 40 | 0 | 231 | 33 | 0 | 1 |
AMP PEAK 7(2Q31.2) WILD-TYPE | 292 | 48 | 314 | 252 | 418 | 7 | 43 | 141 | 3 | 3 | 12 | 2 | 2 | 2 | 8 | 0 | 1 | 0 | 1 | 209 | 15 | 5 | 103 | 13 | 321 | 46 | 1 | 19 |
P value = 1.98e-05 (Fisher's exact test), Q value = 0.027
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 7(2Q31.2) MUTATED | 171 | 122 | 291 | 96 |
AMP PEAK 7(2Q31.2) WILD-TYPE | 541 | 376 | 590 | 327 |
P value = 7.11e-13 (Fisher's exact test), Q value = 1.1e-09
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 7(2Q31.2) MUTATED | 93 | 814 |
AMP PEAK 7(2Q31.2) WILD-TYPE | 733 | 2923 |
P value = 7.91e-06 (Chi-square test), Q value = 0.011
nPatients | 1 | 2 | 3 | 4 | 5 | CURRENT REFORMED SMOKER FOR < OR = 15 YEARS | CURRENT REFORMED SMOKER FOR > 15 YEARS | CURRENT SMOKER | LIFELONG NON-SMOKER |
---|---|---|---|---|---|---|---|---|---|
ALL | 28 | 23 | 37 | 29 | 2 | 355 | 217 | 250 | 128 |
AMP PEAK 7(2Q31.2) MUTATED | 2 | 4 | 4 | 8 | 0 | 113 | 71 | 85 | 16 |
AMP PEAK 7(2Q31.2) WILD-TYPE | 26 | 19 | 33 | 21 | 2 | 242 | 146 | 165 | 112 |
Cluster Labels | AMP PEAK 8(3Q26.2) MUTATED | AMP PEAK 8(3Q26.2) WILD-TYPE |
---|---|---|
Number of samples | 1837 | 2726 |
P value = 4.38e-244 (Chi-square test), Q value = 7.9e-241
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 8(3Q26.2) MUTATED | 74 | 79 | 273 | 65 | 122 | 236 | 78 | 416 | 1 | 453 | 2 | 37 |
AMP PEAK 8(3Q26.2) WILD-TYPE | 51 | 465 | 573 | 347 | 325 | 83 | 415 | 246 | 1 | 95 | 0 | 122 |
P value = 3.5e-05 (t-test), Q value = 0.047
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 640 | 73.6 (23.9) |
AMP PEAK 8(3Q26.2) MUTATED | 214 | 67.2 (30.4) |
AMP PEAK 8(3Q26.2) WILD-TYPE | 426 | 76.8 (19.2) |
P value = 2.22e-239 (Chi-square test), Q value = 4e-236
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 8(3Q26.2) MUTATED | 59 | 6 | 57 | 236 | 78 | 3 | 30 | 74 | 7 | 1 | 4 | 1 | 1 | 0 | 4 | 1 | 0 | 1 | 1 | 288 | 6 | 0 | 36 | 1 | 456 | 59 | 0 | 3 |
AMP PEAK 8(3Q26.2) WILD-TYPE | 297 | 48 | 293 | 83 | 415 | 7 | 45 | 131 | 0 | 2 | 11 | 1 | 2 | 2 | 9 | 0 | 1 | 0 | 1 | 27 | 12 | 7 | 107 | 12 | 96 | 20 | 1 | 17 |
P value = 2.27e-21 (Fisher's exact test), Q value = 3.6e-18
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 8(3Q26.2) MUTATED | 154 | 325 | 202 | 116 |
AMP PEAK 8(3Q26.2) WILD-TYPE | 312 | 307 | 492 | 93 |
P value = 2.73e-10 (Fisher's exact test), Q value = 4.1e-07
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 1067 | 353 | 282 | 11 |
AMP PEAK 8(3Q26.2) MUTATED | 406 | 183 | 146 | 11 |
AMP PEAK 8(3Q26.2) WILD-TYPE | 661 | 170 | 136 | 0 |
P value = 1.25e-24 (Fisher's exact test), Q value = 2e-21
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 8(3Q26.2) MUTATED | 265 | 197 | 528 | 246 |
AMP PEAK 8(3Q26.2) WILD-TYPE | 447 | 301 | 353 | 177 |
P value = 1.04e-13 (Fisher's exact test), Q value = 1.6e-10
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 8(3Q26.2) MUTATED | 239 | 1598 |
AMP PEAK 8(3Q26.2) WILD-TYPE | 587 | 2139 |
P value = 4.66e-06 (t-test), Q value = 0.0065
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 758 | 46.7 (33.0) |
AMP PEAK 8(3Q26.2) MUTATED | 509 | 50.1 (35.1) |
AMP PEAK 8(3Q26.2) WILD-TYPE | 249 | 39.5 (26.8) |
Cluster Labels | AMP PEAK 9(4P16.3) MUTATED | AMP PEAK 9(4P16.3) WILD-TYPE |
---|---|---|
Number of samples | 521 | 4042 |
P value = 2.11e-44 (Chi-square test), Q value = 3.5e-41
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 9(4P16.3) MUTATED | 26 | 45 | 93 | 12 | 40 | 37 | 13 | 94 | 0 | 150 | 1 | 10 |
AMP PEAK 9(4P16.3) WILD-TYPE | 99 | 499 | 753 | 400 | 407 | 282 | 480 | 568 | 2 | 398 | 1 | 149 |
P value = 2.63e-05 (Fisher's exact test), Q value = 0.036
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
AMP PEAK 9(4P16.3) MUTATED | 372 | 149 |
AMP PEAK 9(4P16.3) WILD-TYPE | 2509 | 1533 |
P value = 2.26e-47 (Chi-square test), Q value = 3.8e-44
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 9(4P16.3) MUTATED | 12 | 0 | 12 | 37 | 13 | 2 | 10 | 43 | 3 | 0 | 3 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 30 | 1 | 1 | 10 | 0 | 151 | 27 | 0 | 3 |
AMP PEAK 9(4P16.3) WILD-TYPE | 344 | 54 | 338 | 282 | 480 | 8 | 65 | 162 | 4 | 3 | 12 | 2 | 2 | 2 | 12 | 1 | 1 | 1 | 2 | 285 | 17 | 6 | 133 | 13 | 401 | 52 | 1 | 17 |
P value = 1.15e-06 (Fisher's exact test), Q value = 0.0016
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 9(4P16.3) MUTATED | 22 | 77 | 36 | 21 |
AMP PEAK 9(4P16.3) WILD-TYPE | 444 | 555 | 658 | 188 |
P value = 4.15e-08 (Fisher's exact test), Q value = 6.1e-05
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 9(4P16.3) MUTATED | 60 | 41 | 152 | 51 |
AMP PEAK 9(4P16.3) WILD-TYPE | 652 | 457 | 729 | 372 |
Cluster Labels | AMP PEAK 10(4Q12) MUTATED | AMP PEAK 10(4Q12) WILD-TYPE |
---|---|---|
Number of samples | 594 | 3969 |
P value = 0.000118 (logrank test), Q value = 0.16
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 4296 | 1401 | 0.0 - 224.0 (14.9) |
AMP PEAK 10(4Q12) MUTATED | 567 | 219 | 0.1 - 224.0 (13.1) |
AMP PEAK 10(4Q12) WILD-TYPE | 3729 | 1182 | 0.0 - 223.4 (15.0) |
P value = 7.25e-36 (Chi-square test), Q value = 1.2e-32
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 10(4Q12) MUTATED | 14 | 101 | 117 | 18 | 19 | 52 | 12 | 140 | 1 | 108 | 1 | 11 |
AMP PEAK 10(4Q12) WILD-TYPE | 111 | 443 | 729 | 394 | 428 | 267 | 481 | 522 | 1 | 440 | 1 | 148 |
P value = 1.99e-35 (Chi-square test), Q value = 3.3e-32
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 10(4Q12) MUTATED | 17 | 1 | 6 | 52 | 12 | 4 | 11 | 43 | 3 | 0 | 3 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 73 | 1 | 0 | 11 | 0 | 110 | 12 | 0 | 8 |
AMP PEAK 10(4Q12) WILD-TYPE | 339 | 53 | 344 | 267 | 481 | 6 | 64 | 162 | 4 | 3 | 12 | 1 | 2 | 2 | 13 | 1 | 1 | 1 | 1 | 242 | 17 | 7 | 132 | 13 | 442 | 67 | 1 | 12 |
P value = 1e-09 (Fisher's exact test), Q value = 1.5e-06
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 10(4Q12) MUTATED | 35 | 108 | 49 | 34 |
AMP PEAK 10(4Q12) WILD-TYPE | 431 | 524 | 645 | 175 |
Cluster Labels | AMP PEAK 11(5P15.33) MUTATED | AMP PEAK 11(5P15.33) WILD-TYPE |
---|---|---|
Number of samples | 1663 | 2900 |
P value = 1.15e-05 (t-test), Q value = 0.016
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 4507 | 61.9 (12.6) |
AMP PEAK 11(5P15.33) MUTATED | 1630 | 62.9 (11.8) |
AMP PEAK 11(5P15.33) WILD-TYPE | 2877 | 61.2 (13.1) |
P value = 1.11e-158 (Chi-square test), Q value = 2e-155
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 11(5P15.33) MUTATED | 57 | 54 | 303 | 78 | 64 | 143 | 158 | 477 | 1 | 289 | 2 | 37 |
AMP PEAK 11(5P15.33) WILD-TYPE | 68 | 490 | 543 | 334 | 383 | 176 | 335 | 185 | 1 | 259 | 0 | 122 |
P value = 0.000167 (t-test), Q value = 0.22
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 640 | 73.6 (23.9) |
AMP PEAK 11(5P15.33) MUTATED | 172 | 66.0 (33.6) |
AMP PEAK 11(5P15.33) WILD-TYPE | 468 | 76.3 (18.5) |
P value = 3.86e-116 (Chi-square test), Q value = 6.8e-113
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 11(5P15.33) MUTATED | 69 | 9 | 24 | 143 | 158 | 7 | 45 | 141 | 5 | 1 | 11 | 2 | 2 | 0 | 9 | 1 | 0 | 1 | 2 | 249 | 3 | 1 | 36 | 1 | 292 | 37 | 1 | 2 |
AMP PEAK 11(5P15.33) WILD-TYPE | 287 | 45 | 326 | 176 | 335 | 3 | 30 | 64 | 2 | 2 | 4 | 0 | 1 | 2 | 4 | 0 | 1 | 0 | 0 | 66 | 15 | 6 | 107 | 12 | 260 | 42 | 0 | 18 |
P value = 5.27e-21 (Fisher's exact test), Q value = 8.4e-18
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 11(5P15.33) MUTATED | 206 | 361 | 211 | 88 |
AMP PEAK 11(5P15.33) WILD-TYPE | 260 | 271 | 483 | 121 |
P value = 1.98e-05 (Fisher's exact test), Q value = 0.027
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 11(5P15.33) MUTATED | 348 | 190 | 434 | 169 |
AMP PEAK 11(5P15.33) WILD-TYPE | 364 | 308 | 447 | 254 |
P value = 9.74e-15 (Fisher's exact test), Q value = 1.5e-11
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 11(5P15.33) MUTATED | 206 | 1457 |
AMP PEAK 11(5P15.33) WILD-TYPE | 620 | 2280 |
P value = 1.16e-06 (Chi-square test), Q value = 0.0017
nPatients | 1 | 2 | 3 | 4 | 5 | CURRENT REFORMED SMOKER FOR < OR = 15 YEARS | CURRENT REFORMED SMOKER FOR > 15 YEARS | CURRENT SMOKER | LIFELONG NON-SMOKER |
---|---|---|---|---|---|---|---|---|---|
ALL | 28 | 23 | 37 | 29 | 2 | 355 | 217 | 250 | 128 |
AMP PEAK 11(5P15.33) MUTATED | 9 | 11 | 18 | 14 | 1 | 254 | 134 | 155 | 61 |
AMP PEAK 11(5P15.33) WILD-TYPE | 19 | 12 | 19 | 15 | 1 | 101 | 83 | 95 | 67 |
Cluster Labels | AMP PEAK 12(5Q35.3) MUTATED | AMP PEAK 12(5Q35.3) WILD-TYPE |
---|---|---|
Number of samples | 934 | 3629 |
P value = 1.54e-05 (logrank test), Q value = 0.021
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 4296 | 1401 | 0.0 - 224.0 (14.9) |
AMP PEAK 12(5Q35.3) MUTATED | 893 | 269 | 0.0 - 224.0 (20.0) |
AMP PEAK 12(5Q35.3) WILD-TYPE | 3403 | 1132 | 0.0 - 223.4 (13.8) |
P value = 3.27e-156 (Chi-square test), Q value = 5.8e-153
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 12(5Q35.3) MUTATED | 11 | 48 | 217 | 37 | 36 | 19 | 311 | 97 | 0 | 136 | 0 | 22 |
AMP PEAK 12(5Q35.3) WILD-TYPE | 114 | 496 | 629 | 375 | 411 | 300 | 182 | 565 | 2 | 412 | 2 | 137 |
P value = 1.55e-132 (Chi-square test), Q value = 2.7e-129
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 12(5Q35.3) MUTATED | 33 | 4 | 15 | 19 | 311 | 4 | 13 | 45 | 1 | 1 | 5 | 1 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 22 | 2 | 1 | 21 | 1 | 136 | 19 | 1 | 2 |
AMP PEAK 12(5Q35.3) WILD-TYPE | 323 | 50 | 335 | 300 | 182 | 6 | 62 | 160 | 6 | 2 | 10 | 1 | 3 | 2 | 9 | 1 | 1 | 1 | 2 | 293 | 16 | 6 | 122 | 12 | 416 | 60 | 0 | 18 |
P value = 3.57e-17 (Fisher's exact test), Q value = 5.6e-14
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 12(5Q35.3) MUTATED | 176 | 116 | 168 | 22 |
AMP PEAK 12(5Q35.3) WILD-TYPE | 290 | 516 | 526 | 187 |
P value = 3.43e-05 (Fisher's exact test), Q value = 0.046
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 1067 | 353 | 282 | 11 |
AMP PEAK 12(5Q35.3) MUTATED | 234 | 49 | 35 | 4 |
AMP PEAK 12(5Q35.3) WILD-TYPE | 833 | 304 | 247 | 7 |
P value = 1.13e-06 (Fisher's exact test), Q value = 0.0016
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 12(5Q35.3) MUTATED | 202 | 79 | 235 | 96 |
AMP PEAK 12(5Q35.3) WILD-TYPE | 510 | 419 | 646 | 327 |
P value = 2.19e-08 (Fisher's exact test), Q value = 3.2e-05
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 12(5Q35.3) MUTATED | 112 | 822 |
AMP PEAK 12(5Q35.3) WILD-TYPE | 714 | 2915 |
Cluster Labels | AMP PEAK 13(6P22.3) MUTATED | AMP PEAK 13(6P22.3) WILD-TYPE |
---|---|---|
Number of samples | 1026 | 3537 |
P value = 2.71e-114 (Chi-square test), Q value = 4.7e-111
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 13(6P22.3) MUTATED | 48 | 28 | 213 | 74 | 67 | 50 | 8 | 217 | 1 | 280 | 1 | 38 |
AMP PEAK 13(6P22.3) WILD-TYPE | 77 | 516 | 633 | 338 | 380 | 269 | 485 | 445 | 1 | 268 | 1 | 121 |
P value = 2.53e-12 (Fisher's exact test), Q value = 3.9e-09
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
AMP PEAK 13(6P22.3) MUTATED | 742 | 284 |
AMP PEAK 13(6P22.3) WILD-TYPE | 2139 | 1398 |
P value = 1.06e-89 (Chi-square test), Q value = 1.8e-86
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 13(6P22.3) MUTATED | 67 | 7 | 30 | 50 | 8 | 6 | 25 | 77 | 3 | 0 | 8 | 1 | 1 | 0 | 5 | 0 | 0 | 1 | 2 | 87 | 3 | 1 | 36 | 2 | 282 | 34 | 1 | 0 |
AMP PEAK 13(6P22.3) WILD-TYPE | 289 | 47 | 320 | 269 | 485 | 4 | 50 | 128 | 4 | 3 | 7 | 1 | 2 | 2 | 8 | 1 | 1 | 0 | 0 | 228 | 15 | 6 | 107 | 11 | 270 | 45 | 0 | 20 |
P value = 8.97e-06 (Chi-square test), Q value = 0.012
nPatients | M0 | M1 | M1A | M1B | MX |
---|---|---|---|---|---|
ALL | 1424 | 168 | 9 | 3 | 165 |
AMP PEAK 13(6P22.3) MUTATED | 250 | 27 | 3 | 2 | 54 |
AMP PEAK 13(6P22.3) WILD-TYPE | 1174 | 141 | 6 | 1 | 111 |
P value = 4.83e-12 (Fisher's exact test), Q value = 7.4e-09
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 13(6P22.3) MUTATED | 146 | 101 | 306 | 96 |
AMP PEAK 13(6P22.3) WILD-TYPE | 566 | 397 | 575 | 327 |
P value = 9.67e-11 (Fisher's exact test), Q value = 1.5e-07
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 13(6P22.3) MUTATED | 118 | 908 |
AMP PEAK 13(6P22.3) WILD-TYPE | 708 | 2829 |
Cluster Labels | AMP PEAK 14(6P21.1) MUTATED | AMP PEAK 14(6P21.1) WILD-TYPE |
---|---|---|
Number of samples | 963 | 3600 |
P value = 5.45e-75 (Chi-square test), Q value = 9.3e-72
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 14(6P21.1) MUTATED | 28 | 30 | 195 | 91 | 67 | 52 | 11 | 219 | 0 | 216 | 1 | 50 |
AMP PEAK 14(6P21.1) WILD-TYPE | 97 | 514 | 651 | 321 | 380 | 267 | 482 | 443 | 2 | 332 | 1 | 109 |
P value = 4.37e-06 (Fisher's exact test), Q value = 0.0061
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
AMP PEAK 14(6P21.1) MUTATED | 669 | 294 |
AMP PEAK 14(6P21.1) WILD-TYPE | 2212 | 1388 |
P value = 7.53e-59 (Chi-square test), Q value = 1.3e-55
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 14(6P21.1) MUTATED | 85 | 6 | 33 | 52 | 11 | 5 | 26 | 76 | 2 | 0 | 9 | 1 | 1 | 0 | 5 | 1 | 0 | 1 | 1 | 90 | 0 | 1 | 49 | 1 | 217 | 34 | 0 | 0 |
AMP PEAK 14(6P21.1) WILD-TYPE | 271 | 48 | 317 | 267 | 482 | 5 | 49 | 129 | 5 | 3 | 6 | 1 | 2 | 2 | 8 | 0 | 1 | 0 | 1 | 225 | 18 | 6 | 94 | 12 | 335 | 45 | 1 | 20 |
P value = 0.000124 (Chi-square test), Q value = 0.16
nPatients | M0 | M1 | M1A | M1B | MX |
---|---|---|---|---|---|
ALL | 1424 | 168 | 9 | 3 | 165 |
AMP PEAK 14(6P21.1) MUTATED | 281 | 34 | 4 | 2 | 55 |
AMP PEAK 14(6P21.1) WILD-TYPE | 1143 | 134 | 5 | 1 | 110 |
P value = 8.33e-07 (Fisher's exact test), Q value = 0.0012
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 14(6P21.1) MUTATED | 141 | 112 | 276 | 98 |
AMP PEAK 14(6P21.1) WILD-TYPE | 571 | 386 | 605 | 325 |
P value = 1.41e-08 (Fisher's exact test), Q value = 2.1e-05
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 14(6P21.1) MUTATED | 116 | 847 |
AMP PEAK 14(6P21.1) WILD-TYPE | 710 | 2890 |
Cluster Labels | AMP PEAK 15(6Q21) MUTATED | AMP PEAK 15(6Q21) WILD-TYPE |
---|---|---|
Number of samples | 572 | 3991 |
P value = 5.88e-28 (Chi-square test), Q value = 9.5e-25
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 15(6Q21) MUTATED | 12 | 24 | 157 | 59 | 57 | 27 | 9 | 85 | 0 | 106 | 1 | 34 |
AMP PEAK 15(6Q21) WILD-TYPE | 113 | 520 | 689 | 353 | 390 | 292 | 484 | 577 | 2 | 442 | 1 | 125 |
P value = 2.51e-07 (Fisher's exact test), Q value = 0.00037
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
AMP PEAK 15(6Q21) MUTATED | 416 | 156 |
AMP PEAK 15(6Q21) WILD-TYPE | 2465 | 1526 |
P value = 6.14e-24 (Chi-square test), Q value = 9.8e-21
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 15(6Q21) MUTATED | 54 | 5 | 30 | 27 | 9 | 1 | 5 | 15 | 0 | 0 | 1 | 0 | 0 | 0 | 2 | 0 | 0 | 1 | 0 | 59 | 0 | 1 | 34 | 0 | 107 | 27 | 0 | 0 |
AMP PEAK 15(6Q21) WILD-TYPE | 302 | 49 | 320 | 292 | 484 | 9 | 70 | 190 | 7 | 3 | 14 | 2 | 3 | 2 | 11 | 1 | 1 | 0 | 2 | 256 | 18 | 6 | 109 | 13 | 445 | 52 | 1 | 20 |
P value = 0.000172 (Fisher's exact test), Q value = 0.22
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 15(6Q21) MUTATED | 25 | 76 | 82 | 28 |
AMP PEAK 15(6Q21) WILD-TYPE | 441 | 556 | 612 | 181 |
Cluster Labels | AMP PEAK 16(7P11.2) MUTATED | AMP PEAK 16(7P11.2) WILD-TYPE |
---|---|---|
Number of samples | 2012 | 2551 |
P value = 0 (logrank test), Q value = 0
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 4296 | 1401 | 0.0 - 224.0 (14.9) |
AMP PEAK 16(7P11.2) MUTATED | 1886 | 777 | 0.0 - 224.0 (11.7) |
AMP PEAK 16(7P11.2) WILD-TYPE | 2410 | 624 | 0.0 - 220.9 (18.4) |
P value = 2.02e-154 (Chi-square test), Q value = 3.6e-151
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 16(7P11.2) MUTATED | 64 | 477 | 261 | 227 | 63 | 136 | 160 | 340 | 1 | 182 | 1 | 98 |
AMP PEAK 16(7P11.2) WILD-TYPE | 61 | 67 | 585 | 185 | 384 | 183 | 333 | 322 | 1 | 366 | 1 | 61 |
P value = 1.49e-31 (Fisher's exact test), Q value = 2.4e-28
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
AMP PEAK 16(7P11.2) MUTATED | 1081 | 931 |
AMP PEAK 16(7P11.2) WILD-TYPE | 1800 | 751 |
P value = 5.96e-51 (Chi-square test), Q value = 1e-47
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 16(7P11.2) MUTATED | 206 | 21 | 38 | 136 | 160 | 5 | 35 | 118 | 5 | 2 | 6 | 0 | 2 | 0 | 6 | 1 | 0 | 0 | 2 | 156 | 4 | 2 | 94 | 3 | 184 | 21 | 1 | 17 |
AMP PEAK 16(7P11.2) WILD-TYPE | 150 | 33 | 312 | 183 | 333 | 5 | 40 | 87 | 2 | 1 | 9 | 2 | 1 | 2 | 7 | 0 | 1 | 1 | 0 | 159 | 14 | 5 | 49 | 10 | 368 | 58 | 0 | 3 |
P value = 3.21e-09 (Fisher's exact test), Q value = 4.8e-06
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 16(7P11.2) MUTATED | 160 | 322 | 363 | 101 |
AMP PEAK 16(7P11.2) WILD-TYPE | 306 | 310 | 331 | 108 |
P value = 6.53e-07 (Fisher's exact test), Q value = 0.00094
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 1067 | 353 | 282 | 11 |
AMP PEAK 16(7P11.2) MUTATED | 476 | 205 | 166 | 6 |
AMP PEAK 16(7P11.2) WILD-TYPE | 591 | 148 | 116 | 5 |
P value = 2.81e-13 (Fisher's exact test), Q value = 4.3e-10
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 16(7P11.2) MUTATED | 459 | 1553 |
AMP PEAK 16(7P11.2) WILD-TYPE | 367 | 2184 |
Cluster Labels | AMP PEAK 17(7Q36.3) MUTATED | AMP PEAK 17(7Q36.3) WILD-TYPE |
---|---|---|
Number of samples | 1835 | 2728 |
P value = 0 (logrank test), Q value = 0
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 4296 | 1401 | 0.0 - 224.0 (14.9) |
AMP PEAK 17(7Q36.3) MUTATED | 1731 | 711 | 0.0 - 223.4 (12.3) |
AMP PEAK 17(7Q36.3) WILD-TYPE | 2565 | 690 | 0.0 - 224.0 (16.7) |
P value = 8.19e-157 (Chi-square test), Q value = 1.5e-153
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 17(7Q36.3) MUTATED | 39 | 447 | 206 | 201 | 58 | 59 | 164 | 282 | 1 | 293 | 1 | 82 |
AMP PEAK 17(7Q36.3) WILD-TYPE | 86 | 97 | 640 | 211 | 389 | 260 | 329 | 380 | 1 | 255 | 1 | 77 |
P value = 2.27e-12 (Fisher's exact test), Q value = 3.5e-09
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
AMP PEAK 17(7Q36.3) MUTATED | 1046 | 789 |
AMP PEAK 17(7Q36.3) WILD-TYPE | 1835 | 893 |
P value = 2.41e-50 (Chi-square test), Q value = 4e-47
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 17(7Q36.3) MUTATED | 181 | 19 | 38 | 59 | 164 | 4 | 29 | 95 | 2 | 2 | 7 | 0 | 1 | 0 | 5 | 1 | 0 | 1 | 2 | 132 | 3 | 1 | 79 | 2 | 295 | 17 | 1 | 14 |
AMP PEAK 17(7Q36.3) WILD-TYPE | 175 | 35 | 312 | 260 | 329 | 6 | 46 | 110 | 5 | 1 | 8 | 2 | 2 | 2 | 8 | 0 | 1 | 0 | 0 | 183 | 15 | 6 | 64 | 11 | 257 | 62 | 0 | 6 |
P value = 2.54e-06 (Fisher's exact test), Q value = 0.0036
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 17(7Q36.3) MUTATED | 261 | 194 | 432 | 169 |
AMP PEAK 17(7Q36.3) WILD-TYPE | 451 | 304 | 449 | 254 |
P value = 2.43e-08 (Fisher's exact test), Q value = 3.6e-05
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 17(7Q36.3) MUTATED | 404 | 1431 |
AMP PEAK 17(7Q36.3) WILD-TYPE | 422 | 2306 |
Cluster Labels | AMP PEAK 18(8P11.23) MUTATED | AMP PEAK 18(8P11.23) WILD-TYPE |
---|---|---|
Number of samples | 1207 | 3356 |
P value = 2.97e-67 (Chi-square test), Q value = 5e-64
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 18(8P11.23) MUTATED | 44 | 41 | 313 | 143 | 104 | 101 | 27 | 256 | 0 | 125 | 1 | 52 |
AMP PEAK 18(8P11.23) WILD-TYPE | 81 | 503 | 533 | 269 | 343 | 218 | 466 | 406 | 2 | 423 | 1 | 107 |
P value = 1.66e-37 (Chi-square test), Q value = 2.7e-34
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 18(8P11.23) MUTATED | 129 | 14 | 79 | 101 | 27 | 4 | 28 | 56 | 3 | 0 | 3 | 0 | 1 | 0 | 3 | 0 | 0 | 1 | 1 | 155 | 6 | 1 | 50 | 2 | 126 | 19 | 0 | 2 |
AMP PEAK 18(8P11.23) WILD-TYPE | 227 | 40 | 271 | 218 | 466 | 6 | 47 | 149 | 4 | 3 | 12 | 2 | 2 | 2 | 10 | 1 | 1 | 0 | 1 | 160 | 12 | 6 | 93 | 11 | 426 | 60 | 1 | 18 |
P value = 2.68e-09 (Fisher's exact test), Q value = 4e-06
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 18(8P11.23) MUTATED | 85 | 221 | 184 | 71 |
AMP PEAK 18(8P11.23) WILD-TYPE | 381 | 411 | 510 | 138 |
P value = 4.09e-05 (Fisher's exact test), Q value = 0.055
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 18(8P11.23) MUTATED | 172 | 1035 |
AMP PEAK 18(8P11.23) WILD-TYPE | 654 | 2702 |
Cluster Labels | AMP PEAK 19(8P11.21) MUTATED | AMP PEAK 19(8P11.21) WILD-TYPE |
---|---|---|
Number of samples | 1369 | 3194 |
P value = 3.32e-06 (t-test), Q value = 0.0047
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 4507 | 61.9 (12.6) |
AMP PEAK 19(8P11.21) MUTATED | 1350 | 63.2 (12.0) |
AMP PEAK 19(8P11.21) WILD-TYPE | 3157 | 61.3 (12.9) |
P value = 3.94e-77 (Chi-square test), Q value = 6.7e-74
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 19(8P11.21) MUTATED | 41 | 42 | 333 | 173 | 131 | 88 | 29 | 264 | 0 | 194 | 2 | 72 |
AMP PEAK 19(8P11.21) WILD-TYPE | 84 | 502 | 513 | 239 | 316 | 231 | 464 | 398 | 2 | 354 | 0 | 87 |
P value = 1.92e-46 (Chi-square test), Q value = 3.2e-43
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 19(8P11.21) MUTATED | 155 | 18 | 81 | 88 | 29 | 6 | 30 | 69 | 3 | 0 | 3 | 0 | 0 | 0 | 3 | 0 | 0 | 1 | 2 | 147 | 6 | 0 | 67 | 3 | 196 | 44 | 0 | 2 |
AMP PEAK 19(8P11.21) WILD-TYPE | 201 | 36 | 269 | 231 | 464 | 4 | 45 | 136 | 4 | 3 | 12 | 2 | 3 | 2 | 10 | 1 | 1 | 0 | 0 | 168 | 12 | 7 | 76 | 10 | 356 | 35 | 1 | 18 |
P value = 6.99e-12 (Fisher's exact test), Q value = 1.1e-08
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 19(8P11.21) MUTATED | 82 | 236 | 223 | 67 |
AMP PEAK 19(8P11.21) WILD-TYPE | 384 | 396 | 471 | 142 |
P value = 0.000163 (Fisher's exact test), Q value = 0.21
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 19(8P11.21) MUTATED | 192 | 187 | 293 | 115 |
AMP PEAK 19(8P11.21) WILD-TYPE | 520 | 311 | 588 | 308 |
P value = 1.77e-08 (Fisher's exact test), Q value = 2.6e-05
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 19(8P11.21) MUTATED | 182 | 1187 |
AMP PEAK 19(8P11.21) WILD-TYPE | 644 | 2550 |
Cluster Labels | AMP PEAK 20(8Q24.21) MUTATED | AMP PEAK 20(8Q24.21) WILD-TYPE |
---|---|---|
Number of samples | 2369 | 2194 |
P value = 2.35e-212 (Chi-square test), Q value = 4.2e-209
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 20(8Q24.21) MUTATED | 75 | 62 | 550 | 239 | 163 | 229 | 71 | 441 | 2 | 429 | 2 | 105 |
AMP PEAK 20(8Q24.21) WILD-TYPE | 50 | 482 | 296 | 173 | 284 | 90 | 422 | 221 | 0 | 119 | 0 | 54 |
P value = 3.64e-09 (Fisher's exact test), Q value = 5.4e-06
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
AMP PEAK 20(8Q24.21) MUTATED | 1592 | 777 |
AMP PEAK 20(8Q24.21) WILD-TYPE | 1289 | 905 |
P value = 8.85e-06 (t-test), Q value = 0.012
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 640 | 73.6 (23.9) |
AMP PEAK 20(8Q24.21) MUTATED | 192 | 65.9 (30.8) |
AMP PEAK 20(8Q24.21) WILD-TYPE | 448 | 76.8 (19.5) |
P value = 2.77e-129 (Chi-square test), Q value = 4.9e-126
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 20(8Q24.21) MUTATED | 213 | 25 | 98 | 229 | 71 | 7 | 43 | 137 | 6 | 1 | 8 | 1 | 2 | 0 | 9 | 1 | 0 | 1 | 2 | 223 | 8 | 0 | 98 | 5 | 433 | 57 | 0 | 3 |
AMP PEAK 20(8Q24.21) WILD-TYPE | 143 | 29 | 252 | 90 | 422 | 3 | 32 | 68 | 1 | 2 | 7 | 1 | 1 | 2 | 4 | 0 | 1 | 0 | 0 | 92 | 10 | 7 | 45 | 8 | 119 | 22 | 1 | 17 |
P value = 1.83e-25 (Fisher's exact test), Q value = 2.9e-22
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 20(8Q24.21) MUTATED | 151 | 389 | 373 | 142 |
AMP PEAK 20(8Q24.21) WILD-TYPE | 315 | 243 | 321 | 67 |
P value = 5.45e-11 (Fisher's exact test), Q value = 8.3e-08
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 1067 | 353 | 282 | 11 |
AMP PEAK 20(8Q24.21) MUTATED | 551 | 222 | 205 | 9 |
AMP PEAK 20(8Q24.21) WILD-TYPE | 516 | 131 | 77 | 2 |
P value = 3.83e-18 (Fisher's exact test), Q value = 6e-15
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 20(8Q24.21) MUTATED | 313 | 298 | 574 | 274 |
AMP PEAK 20(8Q24.21) WILD-TYPE | 399 | 200 | 307 | 149 |
P value = 7.76e-22 (Fisher's exact test), Q value = 1.2e-18
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 20(8Q24.21) MUTATED | 304 | 2065 |
AMP PEAK 20(8Q24.21) WILD-TYPE | 522 | 1672 |
Cluster Labels | AMP PEAK 21(9P13.3) MUTATED | AMP PEAK 21(9P13.3) WILD-TYPE |
---|---|---|
Number of samples | 774 | 3789 |
P value = 4.48e-35 (Chi-square test), Q value = 7.3e-32
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 21(9P13.3) MUTATED | 30 | 66 | 152 | 70 | 33 | 90 | 12 | 144 | 0 | 132 | 0 | 45 |
AMP PEAK 21(9P13.3) WILD-TYPE | 95 | 478 | 694 | 342 | 414 | 229 | 481 | 518 | 2 | 416 | 2 | 114 |
P value = 1.12e-32 (Chi-square test), Q value = 1.8e-29
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 21(9P13.3) MUTATED | 56 | 14 | 16 | 90 | 12 | 2 | 15 | 31 | 4 | 0 | 3 | 0 | 1 | 0 | 4 | 0 | 0 | 1 | 0 | 83 | 2 | 0 | 39 | 5 | 132 | 15 | 1 | 1 |
AMP PEAK 21(9P13.3) WILD-TYPE | 300 | 40 | 334 | 229 | 481 | 8 | 60 | 174 | 3 | 3 | 12 | 2 | 2 | 2 | 9 | 1 | 1 | 0 | 2 | 232 | 16 | 7 | 104 | 8 | 420 | 64 | 0 | 19 |
P value = 1.07e-06 (Fisher's exact test), Q value = 0.0015
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 21(9P13.3) MUTATED | 55 | 126 | 114 | 60 |
AMP PEAK 21(9P13.3) WILD-TYPE | 411 | 506 | 580 | 149 |
Cluster Labels | AMP PEAK 22(10P15.1) MUTATED | AMP PEAK 22(10P15.1) WILD-TYPE |
---|---|---|
Number of samples | 909 | 3654 |
P value = 3.98e-106 (Chi-square test), Q value = 6.9e-103
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 22(10P15.1) MUTATED | 51 | 17 | 238 | 38 | 109 | 29 | 16 | 155 | 0 | 239 | 2 | 15 |
AMP PEAK 22(10P15.1) WILD-TYPE | 74 | 527 | 608 | 374 | 338 | 290 | 477 | 507 | 2 | 309 | 0 | 144 |
P value = 1.31e-23 (Fisher's exact test), Q value = 2.1e-20
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
AMP PEAK 22(10P15.1) MUTATED | 701 | 208 |
AMP PEAK 22(10P15.1) WILD-TYPE | 2180 | 1474 |
P value = 1.19e-65 (Chi-square test), Q value = 2e-62
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 22(10P15.1) MUTATED | 34 | 3 | 84 | 29 | 16 | 3 | 27 | 52 | 2 | 0 | 3 | 0 | 2 | 0 | 5 | 0 | 0 | 0 | 1 | 59 | 4 | 1 | 14 | 1 | 241 | 21 | 0 | 0 |
AMP PEAK 22(10P15.1) WILD-TYPE | 322 | 51 | 266 | 290 | 477 | 7 | 48 | 153 | 5 | 3 | 12 | 2 | 1 | 2 | 8 | 1 | 1 | 1 | 1 | 256 | 14 | 6 | 129 | 12 | 311 | 58 | 1 | 20 |
P value = 5.9e-06 (Fisher's exact test), Q value = 0.0082
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 22(10P15.1) MUTATED | 41 | 115 | 70 | 25 |
AMP PEAK 22(10P15.1) WILD-TYPE | 425 | 517 | 624 | 184 |
P value = 6.81e-16 (Fisher's exact test), Q value = 1.1e-12
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 22(10P15.1) MUTATED | 94 | 77 | 252 | 62 |
AMP PEAK 22(10P15.1) WILD-TYPE | 618 | 421 | 629 | 361 |
P value = 1.77e-06 (Fisher's exact test), Q value = 0.0025
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 22(10P15.1) MUTATED | 116 | 793 |
AMP PEAK 22(10P15.1) WILD-TYPE | 710 | 2944 |
P value = 1.48e-08 (Chi-square test), Q value = 2.2e-05
nPatients | 1 | 2 | 3 | 4 | 5 | CURRENT REFORMED SMOKER FOR < OR = 15 YEARS | CURRENT REFORMED SMOKER FOR > 15 YEARS | CURRENT SMOKER | LIFELONG NON-SMOKER |
---|---|---|---|---|---|---|---|---|---|
ALL | 28 | 23 | 37 | 29 | 2 | 355 | 217 | 250 | 128 |
AMP PEAK 22(10P15.1) MUTATED | 9 | 9 | 19 | 11 | 0 | 82 | 37 | 51 | 8 |
AMP PEAK 22(10P15.1) WILD-TYPE | 19 | 14 | 18 | 18 | 2 | 273 | 180 | 199 | 120 |
Cluster Labels | AMP PEAK 23(10Q22.2) MUTATED | AMP PEAK 23(10Q22.2) WILD-TYPE |
---|---|---|
Number of samples | 612 | 3951 |
P value = 4.66e-77 (Chi-square test), Q value = 7.9e-74
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 23(10Q22.2) MUTATED | 18 | 2 | 133 | 23 | 121 | 29 | 10 | 94 | 1 | 169 | 1 | 11 |
AMP PEAK 23(10Q22.2) WILD-TYPE | 107 | 542 | 713 | 389 | 326 | 290 | 483 | 568 | 1 | 379 | 1 | 148 |
P value = 7.43e-21 (Fisher's exact test), Q value = 1.2e-17
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
AMP PEAK 23(10Q22.2) MUTATED | 487 | 125 |
AMP PEAK 23(10Q22.2) WILD-TYPE | 2394 | 1557 |
P value = 1.85e-48 (Chi-square test), Q value = 3.1e-45
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 23(10Q22.2) MUTATED | 20 | 3 | 88 | 29 | 10 | 1 | 19 | 32 | 0 | 0 | 1 | 0 | 1 | 0 | 3 | 0 | 0 | 0 | 0 | 37 | 3 | 0 | 9 | 1 | 171 | 30 | 0 | 0 |
AMP PEAK 23(10Q22.2) WILD-TYPE | 336 | 51 | 262 | 290 | 483 | 9 | 56 | 173 | 7 | 3 | 14 | 2 | 2 | 2 | 10 | 1 | 1 | 1 | 2 | 278 | 15 | 7 | 134 | 12 | 381 | 49 | 1 | 20 |
P value = 1.38e-10 (Fisher's exact test), Q value = 2.1e-07
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 23(10Q22.2) MUTATED | 60 | 47 | 171 | 54 |
AMP PEAK 23(10Q22.2) WILD-TYPE | 652 | 451 | 710 | 369 |
Cluster Labels | AMP PEAK 24(11Q13.3) MUTATED | AMP PEAK 24(11Q13.3) WILD-TYPE |
---|---|---|
Number of samples | 1125 | 3438 |
P value = 1.03e-121 (Chi-square test), Q value = 1.8e-118
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 24(11Q13.3) MUTATED | 48 | 16 | 328 | 48 | 46 | 145 | 27 | 237 | 0 | 205 | 0 | 25 |
AMP PEAK 24(11Q13.3) WILD-TYPE | 77 | 528 | 518 | 364 | 401 | 174 | 466 | 425 | 2 | 343 | 2 | 134 |
P value = 5.68e-05 (Fisher's exact test), Q value = 0.076
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
AMP PEAK 24(11Q13.3) MUTATED | 767 | 358 |
AMP PEAK 24(11Q13.3) WILD-TYPE | 2114 | 1324 |
P value = 8.78e-67 (Chi-square test), Q value = 1.5e-63
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 24(11Q13.3) MUTATED | 47 | 1 | 29 | 145 | 27 | 3 | 26 | 78 | 2 | 1 | 5 | 1 | 2 | 0 | 2 | 1 | 0 | 0 | 1 | 115 | 1 | 0 | 24 | 1 | 205 | 16 | 0 | 0 |
AMP PEAK 24(11Q13.3) WILD-TYPE | 309 | 53 | 321 | 174 | 466 | 7 | 49 | 127 | 5 | 2 | 10 | 1 | 1 | 2 | 11 | 0 | 1 | 1 | 1 | 200 | 17 | 7 | 119 | 12 | 347 | 63 | 1 | 20 |
P value = 1.44e-10 (Fisher's exact test), Q value = 2.2e-07
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 24(11Q13.3) MUTATED | 84 | 188 | 120 | 71 |
AMP PEAK 24(11Q13.3) WILD-TYPE | 382 | 444 | 574 | 138 |
P value = 7.8e-06 (Fisher's exact test), Q value = 0.011
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 1067 | 353 | 282 | 11 |
AMP PEAK 24(11Q13.3) MUTATED | 239 | 88 | 104 | 5 |
AMP PEAK 24(11Q13.3) WILD-TYPE | 828 | 265 | 178 | 6 |
P value = 1.77e-06 (Fisher's exact test), Q value = 0.0025
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 24(11Q13.3) MUTATED | 145 | 126 | 244 | 147 |
AMP PEAK 24(11Q13.3) WILD-TYPE | 567 | 372 | 637 | 276 |
P value = 1.49e-05 (Fisher's exact test), Q value = 0.02
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 24(11Q13.3) MUTATED | 156 | 969 |
AMP PEAK 24(11Q13.3) WILD-TYPE | 670 | 2768 |
Cluster Labels | AMP PEAK 25(12P13.33) MUTATED | AMP PEAK 25(12P13.33) WILD-TYPE |
---|---|---|
Number of samples | 1333 | 3230 |
P value = 1.26e-74 (Chi-square test), Q value = 2.1e-71
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 25(12P13.33) MUTATED | 42 | 64 | 220 | 103 | 66 | 108 | 115 | 266 | 2 | 306 | 1 | 38 |
AMP PEAK 25(12P13.33) WILD-TYPE | 83 | 480 | 626 | 309 | 381 | 211 | 378 | 396 | 0 | 242 | 1 | 121 |
P value = 2.73e-52 (Chi-square test), Q value = 4.6e-49
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 25(12P13.33) MUTATED | 91 | 11 | 37 | 108 | 115 | 1 | 26 | 65 | 3 | 0 | 4 | 1 | 0 | 0 | 2 | 1 | 0 | 1 | 0 | 160 | 4 | 2 | 32 | 5 | 309 | 25 | 0 | 1 |
AMP PEAK 25(12P13.33) WILD-TYPE | 265 | 43 | 313 | 211 | 378 | 9 | 49 | 140 | 4 | 3 | 11 | 1 | 3 | 2 | 11 | 0 | 1 | 0 | 2 | 155 | 14 | 5 | 111 | 8 | 243 | 54 | 1 | 19 |
P value = 9.39e-06 (Fisher's exact test), Q value = 0.013
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 25(12P13.33) MUTATED | 107 | 230 | 206 | 75 |
AMP PEAK 25(12P13.33) WILD-TYPE | 359 | 402 | 488 | 134 |
P value = 2.09e-08 (Fisher's exact test), Q value = 3.1e-05
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 25(12P13.33) MUTATED | 199 | 184 | 378 | 154 |
AMP PEAK 25(12P13.33) WILD-TYPE | 513 | 314 | 503 | 269 |
P value = 3.93e-13 (Fisher's exact test), Q value = 6.1e-10
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 25(12P13.33) MUTATED | 158 | 1175 |
AMP PEAK 25(12P13.33) WILD-TYPE | 668 | 2562 |
Cluster Labels | AMP PEAK 26(12P12.1) MUTATED | AMP PEAK 26(12P12.1) WILD-TYPE |
---|---|---|
Number of samples | 1293 | 3270 |
P value = 1.5e-72 (Chi-square test), Q value = 2.6e-69
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 26(12P12.1) MUTATED | 41 | 62 | 213 | 90 | 67 | 96 | 113 | 279 | 2 | 288 | 2 | 38 |
AMP PEAK 26(12P12.1) WILD-TYPE | 84 | 482 | 633 | 322 | 380 | 223 | 380 | 383 | 0 | 260 | 0 | 121 |
P value = 6.28e-48 (Chi-square test), Q value = 1e-44
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 26(12P12.1) MUTATED | 76 | 13 | 36 | 96 | 113 | 2 | 22 | 81 | 3 | 0 | 6 | 1 | 1 | 0 | 3 | 1 | 0 | 0 | 1 | 156 | 2 | 2 | 32 | 5 | 292 | 29 | 0 | 2 |
AMP PEAK 26(12P12.1) WILD-TYPE | 280 | 41 | 314 | 223 | 380 | 8 | 53 | 124 | 4 | 3 | 9 | 1 | 2 | 2 | 10 | 0 | 1 | 1 | 1 | 159 | 16 | 5 | 111 | 8 | 260 | 50 | 1 | 18 |
P value = 6.8e-05 (Fisher's exact test), Q value = 0.09
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 26(12P12.1) MUTATED | 112 | 232 | 198 | 64 |
AMP PEAK 26(12P12.1) WILD-TYPE | 354 | 400 | 496 | 145 |
P value = 1.25e-07 (Fisher's exact test), Q value = 0.00018
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 26(12P12.1) MUTATED | 210 | 167 | 377 | 134 |
AMP PEAK 26(12P12.1) WILD-TYPE | 502 | 331 | 504 | 289 |
P value = 1.77e-10 (Fisher's exact test), Q value = 2.7e-07
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 26(12P12.1) MUTATED | 161 | 1132 |
AMP PEAK 26(12P12.1) WILD-TYPE | 665 | 2605 |
Cluster Labels | AMP PEAK 27(12Q14.1) MUTATED | AMP PEAK 27(12Q14.1) WILD-TYPE |
---|---|---|
Number of samples | 1071 | 3492 |
P value = 9.67e-05 (logrank test), Q value = 0.13
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 4296 | 1401 | 0.0 - 224.0 (14.9) |
AMP PEAK 27(12Q14.1) MUTATED | 1013 | 373 | 0.1 - 180.2 (14.3) |
AMP PEAK 27(12Q14.1) WILD-TYPE | 3283 | 1028 | 0.0 - 224.0 (15.0) |
P value = 5.92e-05 (t-test), Q value = 0.079
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 4507 | 61.9 (12.6) |
AMP PEAK 27(12Q14.1) MUTATED | 1052 | 63.2 (12.5) |
AMP PEAK 27(12Q14.1) WILD-TYPE | 3455 | 61.4 (12.6) |
P value = 8.12e-23 (Chi-square test), Q value = 1.3e-19
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 27(12Q14.1) MUTATED | 28 | 125 | 187 | 85 | 47 | 56 | 113 | 220 | 1 | 184 | 2 | 23 |
AMP PEAK 27(12Q14.1) WILD-TYPE | 97 | 419 | 659 | 327 | 400 | 263 | 380 | 442 | 1 | 364 | 0 | 136 |
P value = 4.4e-17 (Chi-square test), Q value = 6.9e-14
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 27(12Q14.1) MUTATED | 72 | 12 | 30 | 56 | 113 | 3 | 23 | 71 | 2 | 0 | 4 | 1 | 0 | 0 | 3 | 1 | 0 | 0 | 1 | 109 | 2 | 2 | 21 | 2 | 187 | 15 | 0 | 3 |
AMP PEAK 27(12Q14.1) WILD-TYPE | 284 | 42 | 320 | 263 | 380 | 7 | 52 | 134 | 5 | 3 | 11 | 1 | 3 | 2 | 10 | 0 | 1 | 1 | 1 | 206 | 16 | 5 | 122 | 11 | 365 | 64 | 1 | 17 |
Cluster Labels | AMP PEAK 28(12Q15) MUTATED | AMP PEAK 28(12Q15) WILD-TYPE |
---|---|---|
Number of samples | 1081 | 3482 |
P value = 3.38e-05 (t-test), Q value = 0.046
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 4507 | 61.9 (12.6) |
AMP PEAK 28(12Q15) MUTATED | 1061 | 63.2 (12.3) |
AMP PEAK 28(12Q15) WILD-TYPE | 3446 | 61.4 (12.7) |
P value = 5.44e-32 (Chi-square test), Q value = 8.9e-29
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 28(12Q15) MUTATED | 39 | 87 | 215 | 81 | 45 | 62 | 114 | 231 | 2 | 184 | 2 | 19 |
AMP PEAK 28(12Q15) WILD-TYPE | 86 | 457 | 631 | 331 | 402 | 257 | 379 | 431 | 0 | 364 | 0 | 140 |
P value = 5e-20 (Chi-square test), Q value = 7.9e-17
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 28(12Q15) MUTATED | 68 | 12 | 31 | 62 | 114 | 3 | 26 | 70 | 2 | 0 | 3 | 1 | 0 | 0 | 4 | 1 | 0 | 0 | 1 | 118 | 2 | 2 | 17 | 2 | 188 | 12 | 0 | 4 |
AMP PEAK 28(12Q15) WILD-TYPE | 288 | 42 | 319 | 257 | 379 | 7 | 49 | 135 | 5 | 3 | 12 | 1 | 3 | 2 | 9 | 0 | 1 | 1 | 1 | 197 | 16 | 5 | 126 | 11 | 364 | 67 | 1 | 16 |
P value = 1.95e-06 (Fisher's exact test), Q value = 0.0028
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 28(12Q15) MUTATED | 144 | 937 |
AMP PEAK 28(12Q15) WILD-TYPE | 682 | 2800 |
Cluster Labels | AMP PEAK 29(13Q34) MUTATED | AMP PEAK 29(13Q34) WILD-TYPE |
---|---|---|
Number of samples | 944 | 3619 |
P value = 4.91e-06 (t-test), Q value = 0.0069
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 4507 | 61.9 (12.6) |
AMP PEAK 29(13Q34) MUTATED | 939 | 63.5 (12.4) |
AMP PEAK 29(13Q34) WILD-TYPE | 3568 | 61.4 (12.7) |
P value = 3.07e-173 (Chi-square test), Q value = 5.5e-170
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 29(13Q34) MUTATED | 48 | 29 | 142 | 242 | 37 | 58 | 27 | 110 | 1 | 135 | 0 | 112 |
AMP PEAK 29(13Q34) WILD-TYPE | 77 | 515 | 704 | 170 | 410 | 261 | 466 | 552 | 1 | 413 | 2 | 47 |
P value = 8.09e-136 (Chi-square test), Q value = 1.4e-132
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 29(13Q34) MUTATED | 224 | 18 | 13 | 58 | 27 | 2 | 12 | 33 | 3 | 0 | 2 | 1 | 0 | 0 | 3 | 1 | 0 | 1 | 0 | 51 | 2 | 1 | 107 | 4 | 136 | 22 | 0 | 1 |
AMP PEAK 29(13Q34) WILD-TYPE | 132 | 36 | 337 | 261 | 466 | 8 | 63 | 172 | 4 | 3 | 13 | 1 | 3 | 2 | 10 | 0 | 1 | 0 | 2 | 264 | 16 | 6 | 36 | 9 | 416 | 57 | 1 | 19 |
P value = 5.86e-26 (Fisher's exact test), Q value = 9.4e-23
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 29(13Q34) MUTATED | 58 | 147 | 280 | 57 |
AMP PEAK 29(13Q34) WILD-TYPE | 408 | 485 | 414 | 152 |
P value = 4.2e-08 (Fisher's exact test), Q value = 6.1e-05
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 1067 | 353 | 282 | 11 |
AMP PEAK 29(13Q34) MUTATED | 266 | 137 | 107 | 1 |
AMP PEAK 29(13Q34) WILD-TYPE | 801 | 216 | 175 | 10 |
P value = 3.51e-05 (Chi-square test), Q value = 0.047
nPatients | M0 | M1 | M1A | M1B | MX |
---|---|---|---|---|---|
ALL | 1424 | 168 | 9 | 3 | 165 |
AMP PEAK 29(13Q34) MUTATED | 374 | 62 | 8 | 1 | 50 |
AMP PEAK 29(13Q34) WILD-TYPE | 1050 | 106 | 1 | 2 | 115 |
P value = 2.7e-10 (Fisher's exact test), Q value = 4.1e-07
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 29(13Q34) MUTATED | 124 | 160 | 268 | 108 |
AMP PEAK 29(13Q34) WILD-TYPE | 588 | 338 | 613 | 315 |
P value = 3.06e-15 (Fisher's exact test), Q value = 4.8e-12
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 29(13Q34) MUTATED | 92 | 852 |
AMP PEAK 29(13Q34) WILD-TYPE | 734 | 2885 |
P value = 4.45e-07 (Chi-square test), Q value = 0.00064
nPatients | 1 | 2 | 3 | 4 | 5 | CURRENT REFORMED SMOKER FOR < OR = 15 YEARS | CURRENT REFORMED SMOKER FOR > 15 YEARS | CURRENT SMOKER | LIFELONG NON-SMOKER |
---|---|---|---|---|---|---|---|---|---|
ALL | 28 | 23 | 37 | 29 | 2 | 355 | 217 | 250 | 128 |
AMP PEAK 29(13Q34) MUTATED | 7 | 11 | 13 | 13 | 2 | 54 | 34 | 48 | 28 |
AMP PEAK 29(13Q34) WILD-TYPE | 21 | 12 | 24 | 16 | 0 | 301 | 183 | 202 | 100 |
Cluster Labels | AMP PEAK 30(14Q13.3) MUTATED | AMP PEAK 30(14Q13.3) WILD-TYPE |
---|---|---|
Number of samples | 738 | 3825 |
P value = 5.23e-90 (Chi-square test), Q value = 9e-87
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 30(14Q13.3) MUTATED | 24 | 20 | 165 | 38 | 29 | 91 | 14 | 249 | 1 | 95 | 0 | 12 |
AMP PEAK 30(14Q13.3) WILD-TYPE | 101 | 524 | 681 | 374 | 418 | 228 | 479 | 413 | 1 | 453 | 2 | 147 |
P value = 1.47e-72 (Chi-square test), Q value = 2.5e-69
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 30(14Q13.3) MUTATED | 28 | 10 | 14 | 91 | 14 | 6 | 26 | 100 | 1 | 1 | 5 | 1 | 2 | 0 | 5 | 1 | 0 | 0 | 1 | 99 | 1 | 1 | 12 | 0 | 96 | 14 | 1 | 0 |
AMP PEAK 30(14Q13.3) WILD-TYPE | 328 | 44 | 336 | 228 | 479 | 4 | 49 | 105 | 6 | 2 | 10 | 1 | 1 | 2 | 8 | 0 | 1 | 1 | 1 | 216 | 17 | 6 | 131 | 13 | 456 | 65 | 0 | 20 |
P value = 2.55e-13 (Fisher's exact test), Q value = 3.9e-10
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 30(14Q13.3) MUTATED | 78 | 177 | 84 | 55 |
AMP PEAK 30(14Q13.3) WILD-TYPE | 388 | 455 | 610 | 154 |
P value = 5.93e-10 (Chi-square test), Q value = 8.9e-07
nPatients | M0 | M1 | M1A | M1B | MX |
---|---|---|---|---|---|
ALL | 1424 | 168 | 9 | 3 | 165 |
AMP PEAK 30(14Q13.3) MUTATED | 244 | 14 | 4 | 0 | 58 |
AMP PEAK 30(14Q13.3) WILD-TYPE | 1180 | 154 | 5 | 3 | 107 |
P value = 3.12e-06 (Fisher's exact test), Q value = 0.0044
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 30(14Q13.3) MUTATED | 90 | 648 |
AMP PEAK 30(14Q13.3) WILD-TYPE | 736 | 3089 |
Cluster Labels | AMP PEAK 31(15Q26.3) MUTATED | AMP PEAK 31(15Q26.3) WILD-TYPE |
---|---|---|
Number of samples | 683 | 3880 |
P value = 7e-52 (Chi-square test), Q value = 1.2e-48
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 31(15Q26.3) MUTATED | 19 | 31 | 156 | 26 | 29 | 69 | 24 | 162 | 1 | 153 | 0 | 13 |
AMP PEAK 31(15Q26.3) WILD-TYPE | 106 | 513 | 690 | 386 | 418 | 250 | 469 | 500 | 1 | 395 | 2 | 146 |
P value = 2.23e-47 (Chi-square test), Q value = 3.7e-44
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 31(15Q26.3) MUTATED | 22 | 4 | 16 | 69 | 24 | 1 | 15 | 23 | 4 | 1 | 1 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 1 | 109 | 0 | 3 | 11 | 2 | 154 | 13 | 0 | 1 |
AMP PEAK 31(15Q26.3) WILD-TYPE | 334 | 50 | 334 | 250 | 469 | 9 | 60 | 182 | 3 | 2 | 14 | 2 | 3 | 2 | 9 | 1 | 1 | 1 | 1 | 206 | 18 | 4 | 132 | 11 | 398 | 66 | 1 | 19 |
P value = 3.98e-10 (Fisher's exact test), Q value = 6e-07
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 31(15Q26.3) MUTATED | 53 | 128 | 60 | 43 |
AMP PEAK 31(15Q26.3) WILD-TYPE | 413 | 504 | 634 | 166 |
P value = 8.52e-08 (Fisher's exact test), Q value = 0.00012
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 31(15Q26.3) MUTATED | 76 | 607 |
AMP PEAK 31(15Q26.3) WILD-TYPE | 750 | 3130 |
Cluster Labels | AMP PEAK 32(17Q12) MUTATED | AMP PEAK 32(17Q12) WILD-TYPE |
---|---|---|
Number of samples | 971 | 3592 |
P value = 4.89e-05 (t-test), Q value = 0.065
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 4507 | 61.9 (12.6) |
AMP PEAK 32(17Q12) MUTATED | 957 | 63.3 (12.2) |
AMP PEAK 32(17Q12) WILD-TYPE | 3550 | 61.5 (12.7) |
P value = 5.37e-88 (Chi-square test), Q value = 9.2e-85
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 32(17Q12) MUTATED | 52 | 48 | 277 | 101 | 53 | 55 | 25 | 265 | 0 | 52 | 0 | 43 |
AMP PEAK 32(17Q12) WILD-TYPE | 73 | 496 | 569 | 311 | 394 | 264 | 468 | 397 | 2 | 496 | 2 | 116 |
P value = 4.32e-70 (Chi-square test), Q value = 7.3e-67
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 32(17Q12) MUTATED | 90 | 10 | 16 | 55 | 25 | 4 | 38 | 95 | 2 | 0 | 5 | 2 | 1 | 1 | 5 | 1 | 0 | 0 | 1 | 109 | 3 | 1 | 41 | 2 | 52 | 34 | 0 | 1 |
AMP PEAK 32(17Q12) WILD-TYPE | 266 | 44 | 334 | 264 | 468 | 6 | 37 | 110 | 5 | 3 | 10 | 0 | 2 | 1 | 8 | 0 | 1 | 1 | 1 | 206 | 15 | 6 | 102 | 11 | 500 | 45 | 1 | 19 |
P value = 4.25e-07 (Fisher's exact test), Q value = 0.00062
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 32(17Q12) MUTATED | 87 | 202 | 144 | 48 |
AMP PEAK 32(17Q12) WILD-TYPE | 379 | 430 | 550 | 161 |
P value = 2.15e-06 (Chi-square test), Q value = 0.003
nPatients | M0 | M1 | M1A | M1B | MX |
---|---|---|---|---|---|
ALL | 1424 | 168 | 9 | 3 | 165 |
AMP PEAK 32(17Q12) MUTATED | 326 | 38 | 4 | 2 | 68 |
AMP PEAK 32(17Q12) WILD-TYPE | 1098 | 130 | 5 | 1 | 97 |
Cluster Labels | AMP PEAK 33(17Q25.3) MUTATED | AMP PEAK 33(17Q25.3) WILD-TYPE |
---|---|---|
Number of samples | 1289 | 3274 |
P value = 1.66e-92 (Chi-square test), Q value = 2.9e-89
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 33(17Q25.3) MUTATED | 65 | 67 | 332 | 95 | 68 | 67 | 38 | 321 | 1 | 200 | 1 | 34 |
AMP PEAK 33(17Q25.3) WILD-TYPE | 60 | 477 | 514 | 317 | 379 | 252 | 455 | 341 | 1 | 348 | 1 | 125 |
P value = 9.16e-70 (Chi-square test), Q value = 1.6e-66
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 33(17Q25.3) MUTATED | 88 | 6 | 27 | 67 | 38 | 3 | 40 | 114 | 3 | 0 | 5 | 2 | 2 | 1 | 6 | 1 | 0 | 0 | 2 | 141 | 5 | 1 | 33 | 0 | 202 | 36 | 1 | 2 |
AMP PEAK 33(17Q25.3) WILD-TYPE | 268 | 48 | 323 | 252 | 455 | 7 | 35 | 91 | 4 | 3 | 10 | 0 | 1 | 1 | 7 | 0 | 1 | 1 | 0 | 174 | 13 | 6 | 110 | 13 | 350 | 43 | 0 | 18 |
P value = 5.96e-08 (Fisher's exact test), Q value = 8.7e-05
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 33(17Q25.3) MUTATED | 105 | 227 | 156 | 54 |
AMP PEAK 33(17Q25.3) WILD-TYPE | 361 | 405 | 538 | 155 |
P value = 2.45e-09 (Chi-square test), Q value = 3.7e-06
nPatients | M0 | M1 | M1A | M1B | MX |
---|---|---|---|---|---|
ALL | 1424 | 168 | 9 | 3 | 165 |
AMP PEAK 33(17Q25.3) MUTATED | 369 | 37 | 4 | 2 | 81 |
AMP PEAK 33(17Q25.3) WILD-TYPE | 1055 | 131 | 5 | 1 | 84 |
P value = 4.41e-07 (Fisher's exact test), Q value = 0.00064
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 33(17Q25.3) MUTATED | 175 | 1114 |
AMP PEAK 33(17Q25.3) WILD-TYPE | 651 | 2623 |
P value = 6.2e-05 (t-test), Q value = 0.082
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 568 | 1995.2 (13.5) |
AMP PEAK 33(17Q25.3) MUTATED | 227 | 1997.9 (12.4) |
AMP PEAK 33(17Q25.3) WILD-TYPE | 341 | 1993.4 (13.9) |
Cluster Labels | AMP PEAK 34(18Q11.2) MUTATED | AMP PEAK 34(18Q11.2) WILD-TYPE |
---|---|---|
Number of samples | 683 | 3880 |
P value = 2.58e-39 (Chi-square test), Q value = 4.3e-36
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 34(18Q11.2) MUTATED | 27 | 54 | 144 | 20 | 51 | 53 | 25 | 168 | 0 | 132 | 2 | 7 |
AMP PEAK 34(18Q11.2) WILD-TYPE | 98 | 490 | 702 | 392 | 396 | 266 | 468 | 494 | 2 | 416 | 0 | 152 |
P value = 5.99e-48 (Chi-square test), Q value = 1e-44
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 34(18Q11.2) MUTATED | 13 | 7 | 18 | 53 | 25 | 5 | 12 | 35 | 3 | 0 | 2 | 2 | 1 | 0 | 4 | 1 | 0 | 0 | 0 | 103 | 3 | 0 | 6 | 1 | 134 | 30 | 0 | 2 |
AMP PEAK 34(18Q11.2) WILD-TYPE | 343 | 47 | 332 | 266 | 468 | 5 | 63 | 170 | 4 | 3 | 13 | 0 | 2 | 2 | 9 | 0 | 1 | 1 | 2 | 212 | 15 | 7 | 137 | 12 | 418 | 49 | 1 | 18 |
P value = 7.36e-12 (Fisher's exact test), Q value = 1.1e-08
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 34(18Q11.2) MUTATED | 64 | 124 | 44 | 30 |
AMP PEAK 34(18Q11.2) WILD-TYPE | 402 | 508 | 650 | 179 |
Cluster Labels | AMP PEAK 35(19P13.2) MUTATED | AMP PEAK 35(19P13.2) WILD-TYPE |
---|---|---|
Number of samples | 844 | 3719 |
P value = 5.21e-10 (logrank test), Q value = 7.8e-07
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 4296 | 1401 | 0.0 - 224.0 (14.9) |
AMP PEAK 35(19P13.2) MUTATED | 810 | 338 | 0.1 - 224.0 (14.1) |
AMP PEAK 35(19P13.2) WILD-TYPE | 3486 | 1063 | 0.0 - 223.4 (15.0) |
P value = 2.23e-70 (Chi-square test), Q value = 3.8e-67
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 35(19P13.2) MUTATED | 18 | 231 | 143 | 65 | 23 | 37 | 43 | 91 | 0 | 160 | 1 | 32 |
AMP PEAK 35(19P13.2) WILD-TYPE | 107 | 313 | 703 | 347 | 424 | 282 | 450 | 571 | 2 | 388 | 1 | 127 |
P value = 2.29e-32 (Chi-square test), Q value = 3.7e-29
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 35(19P13.2) MUTATED | 60 | 5 | 11 | 37 | 43 | 0 | 7 | 11 | 3 | 0 | 1 | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 66 | 3 | 0 | 32 | 0 | 161 | 9 | 1 | 10 |
AMP PEAK 35(19P13.2) WILD-TYPE | 296 | 49 | 339 | 282 | 450 | 10 | 68 | 194 | 4 | 3 | 14 | 2 | 2 | 2 | 12 | 0 | 1 | 1 | 2 | 249 | 15 | 7 | 111 | 13 | 391 | 70 | 0 | 10 |
P value = 1.83e-09 (Fisher's exact test), Q value = 2.7e-06
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 35(19P13.2) MUTATED | 71 | 80 | 195 | 69 |
AMP PEAK 35(19P13.2) WILD-TYPE | 641 | 418 | 686 | 354 |
P value = 2.45e-11 (Fisher's exact test), Q value = 3.7e-08
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 35(19P13.2) MUTATED | 223 | 621 |
AMP PEAK 35(19P13.2) WILD-TYPE | 603 | 3116 |
Cluster Labels | AMP PEAK 36(19P13.12) MUTATED | AMP PEAK 36(19P13.12) WILD-TYPE |
---|---|---|
Number of samples | 1054 | 3509 |
P value = 3.73e-104 (Chi-square test), Q value = 6.5e-101
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 36(19P13.12) MUTATED | 19 | 210 | 181 | 65 | 70 | 42 | 43 | 94 | 0 | 299 | 1 | 30 |
AMP PEAK 36(19P13.12) WILD-TYPE | 106 | 334 | 665 | 347 | 377 | 277 | 450 | 568 | 2 | 249 | 1 | 129 |
P value = 9.15e-106 (Chi-square test), Q value = 1.6e-102
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 36(19P13.12) MUTATED | 59 | 6 | 24 | 42 | 43 | 0 | 5 | 11 | 3 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 0 | 71 | 6 | 1 | 30 | 0 | 300 | 40 | 1 | 9 |
AMP PEAK 36(19P13.12) WILD-TYPE | 297 | 48 | 326 | 277 | 450 | 10 | 70 | 194 | 4 | 3 | 15 | 2 | 2 | 2 | 12 | 0 | 1 | 1 | 2 | 244 | 12 | 6 | 113 | 13 | 252 | 39 | 0 | 11 |
P value = 2.83e-29 (Fisher's exact test), Q value = 4.6e-26
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 36(19P13.12) MUTATED | 78 | 94 | 305 | 84 |
AMP PEAK 36(19P13.12) WILD-TYPE | 634 | 404 | 576 | 339 |
P value = 0.000105 (Fisher's exact test), Q value = 0.14
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 36(19P13.12) MUTATED | 234 | 820 |
AMP PEAK 36(19P13.12) WILD-TYPE | 592 | 2917 |
Cluster Labels | AMP PEAK 37(19Q12) MUTATED | AMP PEAK 37(19Q12) WILD-TYPE |
---|---|---|
Number of samples | 1290 | 3273 |
P value = 0.000147 (logrank test), Q value = 0.19
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 4296 | 1401 | 0.0 - 224.0 (14.9) |
AMP PEAK 37(19Q12) MUTATED | 1236 | 466 | 0.0 - 186.4 (15.8) |
AMP PEAK 37(19Q12) WILD-TYPE | 3060 | 935 | 0.0 - 224.0 (14.3) |
P value = 4.38e-77 (Chi-square test), Q value = 7.5e-74
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 37(19Q12) MUTATED | 50 | 195 | 217 | 83 | 80 | 44 | 51 | 227 | 0 | 303 | 2 | 38 |
AMP PEAK 37(19Q12) WILD-TYPE | 75 | 349 | 629 | 329 | 367 | 275 | 442 | 435 | 2 | 245 | 0 | 121 |
P value = 3.02e-97 (Chi-square test), Q value = 5.2e-94
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 37(19Q12) MUTATED | 76 | 7 | 18 | 44 | 51 | 5 | 23 | 50 | 5 | 0 | 4 | 1 | 1 | 0 | 6 | 1 | 0 | 0 | 0 | 129 | 9 | 2 | 38 | 0 | 305 | 53 | 1 | 8 |
AMP PEAK 37(19Q12) WILD-TYPE | 280 | 47 | 332 | 275 | 442 | 5 | 52 | 155 | 2 | 3 | 11 | 1 | 2 | 2 | 7 | 0 | 1 | 1 | 2 | 186 | 9 | 5 | 105 | 13 | 247 | 26 | 0 | 12 |
P value = 9.09e-06 (Fisher's exact test), Q value = 0.013
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 37(19Q12) MUTATED | 75 | 179 | 139 | 41 |
AMP PEAK 37(19Q12) WILD-TYPE | 391 | 453 | 555 | 168 |
P value = 1.36e-16 (Fisher's exact test), Q value = 2.1e-13
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 37(19Q12) MUTATED | 150 | 130 | 350 | 101 |
AMP PEAK 37(19Q12) WILD-TYPE | 562 | 368 | 531 | 322 |
Cluster Labels | AMP PEAK 38(20Q11.21) MUTATED | AMP PEAK 38(20Q11.21) WILD-TYPE |
---|---|---|
Number of samples | 2126 | 2437 |
P value = 0.000183 (logrank test), Q value = 0.24
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 4296 | 1401 | 0.0 - 224.0 (14.9) |
AMP PEAK 38(20Q11.21) MUTATED | 1962 | 664 | 0.0 - 224.0 (13.0) |
AMP PEAK 38(20Q11.21) WILD-TYPE | 2334 | 737 | 0.0 - 223.4 (15.9) |
P value = 1.32e-15 (t-test), Q value = 2.1e-12
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 4507 | 61.9 (12.6) |
AMP PEAK 38(20Q11.21) MUTATED | 2104 | 63.4 (12.1) |
AMP PEAK 38(20Q11.21) WILD-TYPE | 2403 | 60.5 (12.9) |
P value = 1.59e-101 (Chi-square test), Q value = 2.8e-98
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 38(20Q11.21) MUTATED | 87 | 210 | 366 | 295 | 108 | 146 | 109 | 340 | 1 | 319 | 1 | 141 |
AMP PEAK 38(20Q11.21) WILD-TYPE | 38 | 334 | 480 | 117 | 339 | 173 | 384 | 322 | 1 | 229 | 1 | 18 |
P value = 0.000106 (Fisher's exact test), Q value = 0.14
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
AMP PEAK 38(20Q11.21) MUTATED | 1279 | 847 |
AMP PEAK 38(20Q11.21) WILD-TYPE | 1602 | 835 |
P value = 3.09e-110 (Chi-square test), Q value = 5.4e-107
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 38(20Q11.21) MUTATED | 269 | 24 | 47 | 146 | 109 | 5 | 26 | 101 | 6 | 1 | 5 | 0 | 2 | 0 | 5 | 0 | 0 | 0 | 1 | 187 | 5 | 1 | 132 | 7 | 321 | 56 | 1 | 7 |
AMP PEAK 38(20Q11.21) WILD-TYPE | 87 | 30 | 303 | 173 | 384 | 5 | 49 | 104 | 1 | 2 | 10 | 2 | 1 | 2 | 8 | 1 | 1 | 1 | 1 | 128 | 13 | 6 | 11 | 6 | 231 | 23 | 0 | 13 |
P value = 4.98e-24 (Fisher's exact test), Q value = 8e-21
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 38(20Q11.21) MUTATED | 139 | 341 | 418 | 110 |
AMP PEAK 38(20Q11.21) WILD-TYPE | 327 | 291 | 276 | 99 |
P value = 9.07e-06 (Fisher's exact test), Q value = 0.013
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 1067 | 353 | 282 | 11 |
AMP PEAK 38(20Q11.21) MUTATED | 538 | 229 | 163 | 4 |
AMP PEAK 38(20Q11.21) WILD-TYPE | 529 | 124 | 119 | 7 |
P value = 5.57e-10 (Fisher's exact test), Q value = 8.4e-07
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 38(20Q11.21) MUTATED | 297 | 276 | 512 | 214 |
AMP PEAK 38(20Q11.21) WILD-TYPE | 415 | 222 | 369 | 209 |
P value = 2.61e-05 (Fisher's exact test), Q value = 0.035
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 38(20Q11.21) MUTATED | 330 | 1796 |
AMP PEAK 38(20Q11.21) WILD-TYPE | 496 | 1941 |
Cluster Labels | AMP PEAK 39(20Q13.2) MUTATED | AMP PEAK 39(20Q13.2) WILD-TYPE |
---|---|---|
Number of samples | 2209 | 2354 |
P value = 2.01e-08 (t-test), Q value = 3e-05
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 4507 | 61.9 (12.6) |
AMP PEAK 39(20Q13.2) MUTATED | 2186 | 62.9 (12.3) |
AMP PEAK 39(20Q13.2) WILD-TYPE | 2321 | 60.8 (12.9) |
P value = 5.34e-112 (Chi-square test), Q value = 9.3e-109
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 39(20Q13.2) MUTATED | 81 | 206 | 440 | 299 | 116 | 122 | 111 | 320 | 1 | 367 | 2 | 141 |
AMP PEAK 39(20Q13.2) WILD-TYPE | 44 | 338 | 406 | 113 | 331 | 197 | 382 | 342 | 1 | 181 | 0 | 18 |
P value = 3.57e-118 (Chi-square test), Q value = 6.3e-115
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 39(20Q13.2) MUTATED | 273 | 24 | 54 | 122 | 111 | 8 | 31 | 103 | 5 | 1 | 6 | 1 | 2 | 0 | 6 | 0 | 0 | 1 | 2 | 154 | 6 | 0 | 132 | 7 | 370 | 56 | 1 | 6 |
AMP PEAK 39(20Q13.2) WILD-TYPE | 83 | 30 | 296 | 197 | 382 | 2 | 44 | 102 | 2 | 2 | 9 | 1 | 1 | 2 | 7 | 1 | 1 | 0 | 0 | 161 | 12 | 7 | 11 | 6 | 182 | 23 | 0 | 14 |
P value = 3.43e-23 (Fisher's exact test), Q value = 5.5e-20
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 39(20Q13.2) MUTATED | 138 | 317 | 417 | 109 |
AMP PEAK 39(20Q13.2) WILD-TYPE | 328 | 315 | 277 | 100 |
P value = 7.31e-13 (Fisher's exact test), Q value = 1.1e-09
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 39(20Q13.2) MUTATED | 295 | 269 | 535 | 222 |
AMP PEAK 39(20Q13.2) WILD-TYPE | 417 | 229 | 346 | 201 |
P value = 6.59e-06 (Fisher's exact test), Q value = 0.0092
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
AMP PEAK 39(20Q13.2) MUTATED | 341 | 1868 |
AMP PEAK 39(20Q13.2) WILD-TYPE | 485 | 1869 |
Cluster Labels | AMP PEAK 40(XQ28) MUTATED | AMP PEAK 40(XQ28) WILD-TYPE |
---|---|---|
Number of samples | 957 | 3606 |
P value = 2.16e-57 (Chi-square test), Q value = 3.6e-54
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
AMP PEAK 40(XQ28) MUTATED | 25 | 30 | 165 | 82 | 72 | 96 | 38 | 193 | 0 | 217 | 1 | 36 |
AMP PEAK 40(XQ28) WILD-TYPE | 100 | 514 | 681 | 330 | 375 | 223 | 455 | 469 | 2 | 331 | 1 | 123 |
P value = 3.45e-32 (Chi-square test), Q value = 5.6e-29
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
AMP PEAK 40(XQ28) MUTATED | 77 | 5 | 46 | 96 | 38 | 4 | 23 | 74 | 2 | 1 | 2 | 1 | 1 | 0 | 4 | 1 | 0 | 0 | 0 | 80 | 2 | 0 | 34 | 1 | 218 | 24 | 0 | 1 |
AMP PEAK 40(XQ28) WILD-TYPE | 279 | 49 | 304 | 223 | 455 | 6 | 52 | 131 | 5 | 2 | 13 | 1 | 2 | 2 | 9 | 0 | 1 | 1 | 2 | 235 | 16 | 7 | 109 | 12 | 334 | 55 | 1 | 19 |
P value = 1.11e-08 (Fisher's exact test), Q value = 1.6e-05
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
AMP PEAK 40(XQ28) MUTATED | 60 | 174 | 144 | 57 |
AMP PEAK 40(XQ28) WILD-TYPE | 406 | 458 | 550 | 152 |
P value = 0.00012 (Fisher's exact test), Q value = 0.16
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 1067 | 353 | 282 | 11 |
AMP PEAK 40(XQ28) MUTATED | 219 | 96 | 92 | 2 |
AMP PEAK 40(XQ28) WILD-TYPE | 848 | 257 | 190 | 9 |
P value = 6.86e-07 (Fisher's exact test), Q value = 0.00099
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
AMP PEAK 40(XQ28) MUTATED | 133 | 121 | 257 | 131 |
AMP PEAK 40(XQ28) WILD-TYPE | 579 | 377 | 624 | 292 |
Cluster Labels | DEL PEAK 1(1P36.23) MUTATED | DEL PEAK 1(1P36.23) WILD-TYPE |
---|---|---|
Number of samples | 1333 | 3230 |
P value = 2.47e-38 (Chi-square test), Q value = 4.1e-35
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 1(1P36.23) MUTATED | 22 | 129 | 348 | 135 | 54 | 65 | 97 | 213 | 2 | 200 | 0 | 65 |
DEL PEAK 1(1P36.23) WILD-TYPE | 103 | 415 | 498 | 277 | 393 | 254 | 396 | 449 | 0 | 348 | 2 | 94 |
P value = 1.86e-30 (Chi-square test), Q value = 3e-27
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 1(1P36.23) MUTATED | 125 | 10 | 23 | 65 | 97 | 3 | 21 | 43 | 4 | 0 | 3 | 1 | 0 | 0 | 1 | 1 | 0 | 1 | 0 | 134 | 4 | 1 | 57 | 7 | 202 | 27 | 0 | 6 |
DEL PEAK 1(1P36.23) WILD-TYPE | 231 | 44 | 327 | 254 | 396 | 7 | 54 | 162 | 3 | 3 | 12 | 1 | 3 | 2 | 12 | 0 | 1 | 0 | 2 | 181 | 14 | 6 | 86 | 6 | 350 | 52 | 1 | 14 |
P value = 2e-05 (Chi-square test), Q value = 0.027
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE TIS | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 72 | 62 | 7 | 43 | 287 | 186 | 42 | 124 | 25 | 41 | 59 | 1 | 16 |
DEL PEAK 1(1P36.23) MUTATED | 20 | 18 | 3 | 4 | 117 | 79 | 8 | 61 | 15 | 17 | 18 | 0 | 6 |
DEL PEAK 1(1P36.23) WILD-TYPE | 52 | 44 | 4 | 39 | 170 | 107 | 34 | 63 | 10 | 24 | 41 | 1 | 10 |
Cluster Labels | DEL PEAK 2(1P36.11) MUTATED | DEL PEAK 2(1P36.11) WILD-TYPE |
---|---|---|
Number of samples | 1354 | 3209 |
P value = 3.87e-76 (Chi-square test), Q value = 6.6e-73
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 2(1P36.11) MUTATED | 25 | 47 | 353 | 150 | 59 | 64 | 95 | 233 | 1 | 255 | 0 | 69 |
DEL PEAK 2(1P36.11) WILD-TYPE | 100 | 497 | 493 | 262 | 388 | 255 | 398 | 429 | 1 | 293 | 2 | 90 |
P value = 1.12e-45 (Chi-square test), Q value = 1.9e-42
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 2(1P36.11) MUTATED | 139 | 10 | 24 | 64 | 95 | 5 | 21 | 52 | 3 | 0 | 3 | 1 | 0 | 0 | 2 | 1 | 0 | 1 | 1 | 142 | 4 | 1 | 61 | 7 | 256 | 31 | 0 | 3 |
DEL PEAK 2(1P36.11) WILD-TYPE | 217 | 44 | 326 | 255 | 398 | 5 | 54 | 153 | 4 | 3 | 12 | 1 | 3 | 2 | 11 | 0 | 1 | 0 | 1 | 173 | 14 | 6 | 82 | 6 | 296 | 48 | 1 | 17 |
P value = 1.72e-06 (Fisher's exact test), Q value = 0.0025
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 2(1P36.11) MUTATED | 196 | 150 | 350 | 147 |
DEL PEAK 2(1P36.11) WILD-TYPE | 516 | 348 | 531 | 276 |
P value = 1.84e-11 (Fisher's exact test), Q value = 2.8e-08
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 2(1P36.11) MUTATED | 167 | 1187 |
DEL PEAK 2(1P36.11) WILD-TYPE | 659 | 2550 |
P value = 1.64e-05 (Chi-square test), Q value = 0.022
nPatients | 1 | 2 | 3 | 4 | 5 | CURRENT REFORMED SMOKER FOR < OR = 15 YEARS | CURRENT REFORMED SMOKER FOR > 15 YEARS | CURRENT SMOKER | LIFELONG NON-SMOKER |
---|---|---|---|---|---|---|---|---|---|
ALL | 28 | 23 | 37 | 29 | 2 | 355 | 217 | 250 | 128 |
DEL PEAK 2(1P36.11) MUTATED | 4 | 3 | 13 | 4 | 0 | 123 | 58 | 90 | 18 |
DEL PEAK 2(1P36.11) WILD-TYPE | 24 | 20 | 24 | 25 | 2 | 232 | 159 | 160 | 110 |
P value = 4.47e-05 (t-test), Q value = 0.06
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1576 | 2.3 (4.6) |
DEL PEAK 2(1P36.11) MUTATED | 569 | 3.0 (5.8) |
DEL PEAK 2(1P36.11) WILD-TYPE | 1007 | 1.9 (3.7) |
P value = 6.09e-06 (Chi-square test), Q value = 0.0085
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE TIS | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 72 | 62 | 7 | 43 | 287 | 186 | 42 | 124 | 25 | 41 | 59 | 1 | 16 |
DEL PEAK 2(1P36.11) MUTATED | 17 | 17 | 3 | 7 | 124 | 81 | 9 | 60 | 17 | 18 | 17 | 0 | 6 |
DEL PEAK 2(1P36.11) WILD-TYPE | 55 | 45 | 4 | 36 | 163 | 105 | 33 | 64 | 8 | 23 | 42 | 1 | 10 |
Cluster Labels | DEL PEAK 3(1P13.2) MUTATED | DEL PEAK 3(1P13.2) WILD-TYPE |
---|---|---|
Number of samples | 964 | 3599 |
P value = 1.66e-05 (t-test), Q value = 0.023
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 4507 | 61.9 (12.6) |
DEL PEAK 3(1P13.2) MUTATED | 953 | 63.4 (12.1) |
DEL PEAK 3(1P13.2) WILD-TYPE | 3554 | 61.4 (12.8) |
P value = 2.36e-70 (Chi-square test), Q value = 4e-67
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 3(1P13.2) MUTATED | 19 | 23 | 251 | 107 | 25 | 78 | 59 | 251 | 0 | 97 | 1 | 51 |
DEL PEAK 3(1P13.2) WILD-TYPE | 106 | 521 | 595 | 305 | 422 | 241 | 434 | 411 | 2 | 451 | 1 | 108 |
P value = 5.09e-41 (Chi-square test), Q value = 8.4e-38
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 3(1P13.2) MUTATED | 98 | 9 | 11 | 78 | 59 | 4 | 26 | 60 | 3 | 0 | 6 | 1 | 0 | 0 | 6 | 1 | 0 | 0 | 1 | 141 | 3 | 2 | 48 | 2 | 98 | 11 | 0 | 0 |
DEL PEAK 3(1P13.2) WILD-TYPE | 258 | 45 | 339 | 241 | 434 | 6 | 49 | 145 | 4 | 3 | 9 | 1 | 3 | 2 | 7 | 0 | 1 | 1 | 1 | 174 | 15 | 5 | 95 | 11 | 454 | 68 | 1 | 20 |
P value = 9.22e-12 (Fisher's exact test), Q value = 1.4e-08
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 3(1P13.2) MUTATED | 105 | 859 |
DEL PEAK 3(1P13.2) WILD-TYPE | 721 | 2878 |
P value = 5.7e-05 (Chi-square test), Q value = 0.076
nPatients | 1 | 2 | 3 | 4 | 5 | CURRENT REFORMED SMOKER FOR < OR = 15 YEARS | CURRENT REFORMED SMOKER FOR > 15 YEARS | CURRENT SMOKER | LIFELONG NON-SMOKER |
---|---|---|---|---|---|---|---|---|---|
ALL | 28 | 23 | 37 | 29 | 2 | 355 | 217 | 250 | 128 |
DEL PEAK 3(1P13.2) MUTATED | 3 | 4 | 7 | 5 | 0 | 138 | 63 | 92 | 27 |
DEL PEAK 3(1P13.2) WILD-TYPE | 25 | 19 | 30 | 24 | 2 | 217 | 154 | 158 | 101 |
P value = 0.000131 (t-test), Q value = 0.17
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 1576 | 2.3 (4.6) |
DEL PEAK 3(1P13.2) MUTATED | 425 | 3.1 (5.5) |
DEL PEAK 3(1P13.2) WILD-TYPE | 1151 | 2.0 (4.3) |
Cluster Labels | DEL PEAK 4(2Q22.1) MUTATED | DEL PEAK 4(2Q22.1) WILD-TYPE |
---|---|---|
Number of samples | 675 | 3888 |
P value = 2.01e-45 (Chi-square test), Q value = 3.3e-42
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 4(2Q22.1) MUTATED | 38 | 43 | 193 | 24 | 31 | 64 | 19 | 124 | 0 | 128 | 1 | 10 |
DEL PEAK 4(2Q22.1) WILD-TYPE | 87 | 501 | 653 | 388 | 416 | 255 | 474 | 538 | 2 | 420 | 1 | 149 |
P value = 1.85e-35 (Chi-square test), Q value = 3e-32
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 4(2Q22.1) MUTATED | 22 | 2 | 15 | 64 | 19 | 3 | 7 | 19 | 0 | 0 | 3 | 0 | 0 | 0 | 4 | 1 | 0 | 1 | 0 | 85 | 1 | 1 | 9 | 0 | 129 | 15 | 0 | 1 |
DEL PEAK 4(2Q22.1) WILD-TYPE | 334 | 52 | 335 | 255 | 474 | 7 | 68 | 186 | 7 | 3 | 12 | 2 | 3 | 2 | 9 | 0 | 1 | 0 | 2 | 230 | 17 | 6 | 134 | 13 | 423 | 64 | 1 | 19 |
P value = 9.01e-06 (Fisher's exact test), Q value = 0.013
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 4(2Q22.1) MUTATED | 40 | 95 | 59 | 38 |
DEL PEAK 4(2Q22.1) WILD-TYPE | 426 | 537 | 635 | 171 |
P value = 1.02e-05 (Fisher's exact test), Q value = 0.014
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 4(2Q22.1) MUTATED | 65 | 73 | 156 | 66 |
DEL PEAK 4(2Q22.1) WILD-TYPE | 647 | 425 | 725 | 357 |
Cluster Labels | DEL PEAK 5(2Q37.3) MUTATED | DEL PEAK 5(2Q37.3) WILD-TYPE |
---|---|---|
Number of samples | 910 | 3653 |
P value = 9.98e-68 (Chi-square test), Q value = 1.7e-64
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 5(2Q37.3) MUTATED | 60 | 58 | 253 | 21 | 40 | 92 | 47 | 156 | 1 | 169 | 1 | 12 |
DEL PEAK 5(2Q37.3) WILD-TYPE | 65 | 486 | 593 | 391 | 407 | 227 | 446 | 506 | 1 | 379 | 1 | 147 |
P value = 1.66e-41 (Chi-square test), Q value = 2.7e-38
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 5(2Q37.3) MUTATED | 19 | 1 | 24 | 92 | 47 | 3 | 7 | 32 | 2 | 0 | 5 | 1 | 0 | 0 | 4 | 1 | 0 | 0 | 0 | 100 | 2 | 1 | 11 | 0 | 171 | 14 | 0 | 2 |
DEL PEAK 5(2Q37.3) WILD-TYPE | 337 | 53 | 326 | 227 | 446 | 7 | 68 | 173 | 5 | 3 | 10 | 1 | 3 | 2 | 9 | 0 | 1 | 1 | 2 | 215 | 16 | 6 | 132 | 13 | 381 | 65 | 1 | 18 |
P value = 2.11e-06 (Chi-square test), Q value = 0.003
nPatients | 1 | 2 | 3 | 4 | 5 | CURRENT REFORMED SMOKER FOR < OR = 15 YEARS | CURRENT REFORMED SMOKER FOR > 15 YEARS | CURRENT SMOKER | LIFELONG NON-SMOKER |
---|---|---|---|---|---|---|---|---|---|
ALL | 28 | 23 | 37 | 29 | 2 | 355 | 217 | 250 | 128 |
DEL PEAK 5(2Q37.3) MUTATED | 13 | 6 | 19 | 15 | 2 | 89 | 42 | 81 | 31 |
DEL PEAK 5(2Q37.3) WILD-TYPE | 15 | 17 | 18 | 14 | 0 | 266 | 175 | 169 | 97 |
Cluster Labels | DEL PEAK 6(3P26.2) MUTATED | DEL PEAK 6(3P26.2) WILD-TYPE |
---|---|---|
Number of samples | 1593 | 2970 |
P value = 3.10000000000018e-311 (Chi-square test), Q value = 5.6e-308
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 6(3P26.2) MUTATED | 25 | 42 | 140 | 61 | 49 | 221 | 426 | 404 | 2 | 201 | 0 | 20 |
DEL PEAK 6(3P26.2) WILD-TYPE | 100 | 502 | 706 | 351 | 398 | 98 | 67 | 258 | 0 | 347 | 2 | 139 |
P value = 3.76e-33 (Fisher's exact test), Q value = 6.1e-30
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 6(3P26.2) MUTATED | 818 | 775 |
DEL PEAK 6(3P26.2) WILD-TYPE | 2063 | 907 |
P value = 6.06e-202 (Chi-square test), Q value = 1.1e-198
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 6(3P26.2) MUTATED | 57 | 4 | 16 | 221 | 426 | 5 | 35 | 96 | 6 | 0 | 6 | 1 | 2 | 0 | 7 | 1 | 0 | 1 | 0 | 242 | 6 | 2 | 16 | 3 | 203 | 27 | 0 | 3 |
DEL PEAK 6(3P26.2) WILD-TYPE | 299 | 50 | 334 | 98 | 67 | 5 | 40 | 109 | 1 | 3 | 9 | 1 | 1 | 2 | 6 | 0 | 1 | 0 | 2 | 73 | 12 | 5 | 127 | 10 | 349 | 52 | 1 | 17 |
P value = 1.2e-19 (Fisher's exact test), Q value = 1.9e-16
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 6(3P26.2) MUTATED | 337 | 347 | 307 | 115 |
DEL PEAK 6(3P26.2) WILD-TYPE | 129 | 285 | 387 | 94 |
P value = 1.28e-12 (Fisher's exact test), Q value = 2e-09
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 6(3P26.2) MUTATED | 432 | 210 | 411 | 248 |
DEL PEAK 6(3P26.2) WILD-TYPE | 280 | 288 | 470 | 175 |
P value = 7.96e-25 (Fisher's exact test), Q value = 1.3e-21
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 6(3P26.2) MUTATED | 165 | 1428 |
DEL PEAK 6(3P26.2) WILD-TYPE | 661 | 2309 |
P value = 2.37e-19 (Chi-square test), Q value = 3.7e-16
nPatients | 1 | 2 | 3 | 4 | 5 | CURRENT REFORMED SMOKER FOR < OR = 15 YEARS | CURRENT REFORMED SMOKER FOR > 15 YEARS | CURRENT SMOKER | LIFELONG NON-SMOKER |
---|---|---|---|---|---|---|---|---|---|
ALL | 28 | 23 | 37 | 29 | 2 | 355 | 217 | 250 | 128 |
DEL PEAK 6(3P26.2) MUTATED | 2 | 7 | 8 | 6 | 0 | 237 | 120 | 177 | 69 |
DEL PEAK 6(3P26.2) WILD-TYPE | 26 | 16 | 29 | 23 | 2 | 118 | 97 | 73 | 59 |
Cluster Labels | DEL PEAK 7(3P14.2) MUTATED | DEL PEAK 7(3P14.2) WILD-TYPE |
---|---|---|
Number of samples | 1740 | 2823 |
P value = 4.18e-251 (Chi-square test), Q value = 7.6e-248
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 7(3P14.2) MUTATED | 41 | 51 | 258 | 75 | 57 | 240 | 387 | 439 | 1 | 162 | 0 | 27 |
DEL PEAK 7(3P14.2) WILD-TYPE | 84 | 493 | 588 | 337 | 390 | 79 | 106 | 223 | 1 | 386 | 2 | 132 |
P value = 4.14e-34 (Fisher's exact test), Q value = 6.8e-31
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 7(3P14.2) MUTATED | 905 | 835 |
DEL PEAK 7(3P14.2) WILD-TYPE | 1976 | 847 |
P value = 2.21e-05 (t-test), Q value = 0.03
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 640 | 73.6 (23.9) |
DEL PEAK 7(3P14.2) MUTATED | 161 | 64.1 (35.4) |
DEL PEAK 7(3P14.2) WILD-TYPE | 479 | 76.7 (17.5) |
P value = 6.91e-199 (Chi-square test), Q value = 1.2e-195
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 7(3P14.2) MUTATED | 69 | 6 | 19 | 240 | 387 | 4 | 38 | 102 | 6 | 0 | 5 | 1 | 1 | 0 | 6 | 1 | 0 | 1 | 0 | 270 | 6 | 4 | 23 | 3 | 163 | 32 | 0 | 2 |
DEL PEAK 7(3P14.2) WILD-TYPE | 287 | 48 | 331 | 79 | 106 | 6 | 37 | 103 | 1 | 3 | 10 | 1 | 2 | 2 | 7 | 0 | 1 | 0 | 2 | 45 | 12 | 3 | 120 | 10 | 389 | 47 | 1 | 18 |
P value = 1.37e-18 (Fisher's exact test), Q value = 2.2e-15
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 7(3P14.2) MUTATED | 330 | 375 | 306 | 125 |
DEL PEAK 7(3P14.2) WILD-TYPE | 136 | 257 | 388 | 84 |
P value = 1.18e-16 (Fisher's exact test), Q value = 1.9e-13
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 7(3P14.2) MUTATED | 439 | 214 | 382 | 250 |
DEL PEAK 7(3P14.2) WILD-TYPE | 273 | 284 | 499 | 173 |
P value = 2.54e-20 (Fisher's exact test), Q value = 4e-17
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 7(3P14.2) MUTATED | 201 | 1539 |
DEL PEAK 7(3P14.2) WILD-TYPE | 625 | 2198 |
P value = 5.04e-20 (Chi-square test), Q value = 8e-17
nPatients | 1 | 2 | 3 | 4 | 5 | CURRENT REFORMED SMOKER FOR < OR = 15 YEARS | CURRENT REFORMED SMOKER FOR > 15 YEARS | CURRENT SMOKER | LIFELONG NON-SMOKER |
---|---|---|---|---|---|---|---|---|---|
ALL | 28 | 23 | 37 | 29 | 2 | 355 | 217 | 250 | 128 |
DEL PEAK 7(3P14.2) MUTATED | 2 | 12 | 14 | 8 | 2 | 262 | 131 | 193 | 71 |
DEL PEAK 7(3P14.2) WILD-TYPE | 26 | 11 | 23 | 21 | 0 | 93 | 86 | 57 | 57 |
Cluster Labels | DEL PEAK 8(4P16.3) MUTATED | DEL PEAK 8(4P16.3) WILD-TYPE |
---|---|---|
Number of samples | 1338 | 3225 |
P value = 2.83e-56 (Chi-square test), Q value = 4.8e-53
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 8(4P16.3) MUTATED | 42 | 78 | 267 | 117 | 65 | 137 | 67 | 278 | 2 | 223 | 0 | 59 |
DEL PEAK 8(4P16.3) WILD-TYPE | 83 | 466 | 579 | 295 | 382 | 182 | 426 | 384 | 0 | 325 | 2 | 100 |
P value = 7.22e-60 (Chi-square test), Q value = 1.2e-56
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 8(4P16.3) MUTATED | 108 | 9 | 27 | 137 | 67 | 3 | 18 | 58 | 3 | 0 | 1 | 1 | 0 | 1 | 2 | 1 | 0 | 1 | 1 | 187 | 4 | 1 | 54 | 4 | 225 | 34 | 0 | 2 |
DEL PEAK 8(4P16.3) WILD-TYPE | 248 | 45 | 323 | 182 | 426 | 7 | 57 | 147 | 4 | 3 | 14 | 1 | 3 | 1 | 11 | 0 | 1 | 0 | 1 | 128 | 14 | 6 | 89 | 9 | 327 | 45 | 1 | 18 |
P value = 7.24e-07 (Fisher's exact test), Q value = 0.001
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 8(4P16.3) MUTATED | 108 | 231 | 218 | 86 |
DEL PEAK 8(4P16.3) WILD-TYPE | 358 | 401 | 476 | 123 |
P value = 7.25e-05 (Fisher's exact test), Q value = 0.096
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 1067 | 353 | 282 | 11 |
DEL PEAK 8(4P16.3) MUTATED | 329 | 133 | 122 | 7 |
DEL PEAK 8(4P16.3) WILD-TYPE | 738 | 220 | 160 | 4 |
P value = 6.77e-05 (Fisher's exact test), Q value = 0.09
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 8(4P16.3) MUTATED | 210 | 147 | 327 | 170 |
DEL PEAK 8(4P16.3) WILD-TYPE | 502 | 351 | 554 | 253 |
P value = 0.000169 (Fisher's exact test), Q value = 0.22
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 8(4P16.3) MUTATED | 198 | 1140 |
DEL PEAK 8(4P16.3) WILD-TYPE | 628 | 2597 |
P value = 0.000123 (t-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 568 | 1995.2 (13.5) |
DEL PEAK 8(4P16.3) MUTATED | 241 | 1997.6 (11.9) |
DEL PEAK 8(4P16.3) WILD-TYPE | 327 | 1993.4 (14.3) |
P value = 0.000145 (Chi-square test), Q value = 0.19
nPatients | 1 | 2 | 3 | 4 | 5 | CURRENT REFORMED SMOKER FOR < OR = 15 YEARS | CURRENT REFORMED SMOKER FOR > 15 YEARS | CURRENT SMOKER | LIFELONG NON-SMOKER |
---|---|---|---|---|---|---|---|---|---|
ALL | 28 | 23 | 37 | 29 | 2 | 355 | 217 | 250 | 128 |
DEL PEAK 8(4P16.3) MUTATED | 9 | 8 | 12 | 9 | 0 | 171 | 73 | 123 | 38 |
DEL PEAK 8(4P16.3) WILD-TYPE | 19 | 15 | 25 | 20 | 2 | 184 | 144 | 127 | 90 |
Cluster Labels | DEL PEAK 9(4Q22.1) MUTATED | DEL PEAK 9(4Q22.1) WILD-TYPE |
---|---|---|
Number of samples | 1440 | 3123 |
P value = 3e-124 (Chi-square test), Q value = 5.3e-121
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 9(4Q22.1) MUTATED | 49 | 58 | 234 | 125 | 76 | 102 | 67 | 286 | 2 | 367 | 1 | 69 |
DEL PEAK 9(4Q22.1) WILD-TYPE | 76 | 486 | 612 | 287 | 371 | 217 | 426 | 376 | 0 | 181 | 1 | 90 |
P value = 1.81e-107 (Chi-square test), Q value = 3.2e-104
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 9(4Q22.1) MUTATED | 116 | 9 | 25 | 102 | 67 | 2 | 20 | 68 | 3 | 0 | 3 | 2 | 1 | 0 | 4 | 1 | 0 | 1 | 1 | 179 | 5 | 1 | 64 | 4 | 370 | 46 | 0 | 0 |
DEL PEAK 9(4Q22.1) WILD-TYPE | 240 | 45 | 325 | 217 | 426 | 8 | 55 | 137 | 4 | 3 | 12 | 0 | 2 | 2 | 9 | 0 | 1 | 0 | 1 | 136 | 13 | 6 | 79 | 9 | 182 | 33 | 1 | 20 |
P value = 3.18e-08 (Fisher's exact test), Q value = 4.7e-05
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 9(4Q22.1) MUTATED | 98 | 235 | 232 | 76 |
DEL PEAK 9(4Q22.1) WILD-TYPE | 368 | 397 | 462 | 133 |
P value = 3.84e-22 (Fisher's exact test), Q value = 6.1e-19
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 9(4Q22.1) MUTATED | 216 | 156 | 464 | 160 |
DEL PEAK 9(4Q22.1) WILD-TYPE | 496 | 342 | 417 | 263 |
P value = 1.46e-14 (Fisher's exact test), Q value = 2.3e-11
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 9(4Q22.1) MUTATED | 170 | 1270 |
DEL PEAK 9(4Q22.1) WILD-TYPE | 656 | 2467 |
Cluster Labels | DEL PEAK 10(4Q34.3) MUTATED | DEL PEAK 10(4Q34.3) WILD-TYPE |
---|---|---|
Number of samples | 1640 | 2923 |
P value = 1.89e-127 (Chi-square test), Q value = 3.3e-124
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 10(4Q34.3) MUTATED | 53 | 89 | 270 | 132 | 91 | 118 | 76 | 338 | 2 | 396 | 1 | 70 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 72 | 455 | 576 | 280 | 356 | 201 | 417 | 324 | 0 | 152 | 1 | 89 |
P value = 9.53e-120 (Chi-square test), Q value = 1.7e-116
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 10(4Q34.3) MUTATED | 121 | 11 | 35 | 118 | 76 | 2 | 31 | 79 | 3 | 0 | 4 | 2 | 1 | 0 | 2 | 1 | 0 | 1 | 2 | 209 | 6 | 1 | 66 | 3 | 399 | 50 | 0 | 3 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 235 | 43 | 315 | 201 | 417 | 8 | 44 | 126 | 4 | 3 | 11 | 0 | 2 | 2 | 11 | 0 | 1 | 0 | 0 | 106 | 12 | 6 | 77 | 10 | 153 | 29 | 1 | 17 |
P value = 1.46e-08 (Fisher's exact test), Q value = 2.2e-05
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 10(4Q34.3) MUTATED | 119 | 275 | 247 | 82 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 347 | 357 | 447 | 127 |
P value = 4.37e-16 (Fisher's exact test), Q value = 6.8e-13
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 10(4Q34.3) MUTATED | 253 | 184 | 485 | 182 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 459 | 314 | 396 | 241 |
P value = 4.43e-11 (Fisher's exact test), Q value = 6.7e-08
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 10(4Q34.3) MUTATED | 216 | 1424 |
DEL PEAK 10(4Q34.3) WILD-TYPE | 610 | 2313 |
Cluster Labels | DEL PEAK 11(5Q11.2) MUTATED | DEL PEAK 11(5Q11.2) WILD-TYPE |
---|---|---|
Number of samples | 1373 | 3190 |
P value = 1.28e-171 (Chi-square test), Q value = 2.3e-168
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 11(5Q11.2) MUTATED | 64 | 43 | 214 | 91 | 78 | 134 | 10 | 361 | 2 | 326 | 1 | 49 |
DEL PEAK 11(5Q11.2) WILD-TYPE | 61 | 501 | 632 | 321 | 369 | 185 | 483 | 301 | 0 | 222 | 1 | 110 |
P value = 5.77e-05 (t-test), Q value = 0.077
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 640 | 73.6 (23.9) |
DEL PEAK 11(5Q11.2) MUTATED | 152 | 65.1 (31.1) |
DEL PEAK 11(5Q11.2) WILD-TYPE | 488 | 76.2 (20.6) |
P value = 2.01e-152 (Chi-square test), Q value = 3.6e-149
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 11(5Q11.2) MUTATED | 84 | 7 | 29 | 134 | 10 | 3 | 28 | 78 | 5 | 0 | 3 | 0 | 2 | 1 | 4 | 1 | 0 | 0 | 2 | 233 | 2 | 1 | 46 | 2 | 329 | 47 | 0 | 0 |
DEL PEAK 11(5Q11.2) WILD-TYPE | 272 | 47 | 321 | 185 | 483 | 7 | 47 | 127 | 2 | 3 | 12 | 2 | 1 | 1 | 9 | 0 | 1 | 1 | 0 | 82 | 16 | 6 | 97 | 11 | 223 | 32 | 1 | 20 |
P value = 3.08e-17 (Fisher's exact test), Q value = 4.9e-14
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 11(5Q11.2) MUTATED | 114 | 270 | 158 | 85 |
DEL PEAK 11(5Q11.2) WILD-TYPE | 352 | 362 | 536 | 124 |
P value = 6.37e-05 (Fisher's exact test), Q value = 0.085
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 1067 | 353 | 282 | 11 |
DEL PEAK 11(5Q11.2) MUTATED | 333 | 153 | 114 | 5 |
DEL PEAK 11(5Q11.2) WILD-TYPE | 734 | 200 | 168 | 6 |
P value = 9.26e-06 (Fisher's exact test), Q value = 0.013
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 11(5Q11.2) MUTATED | 227 | 166 | 379 | 170 |
DEL PEAK 11(5Q11.2) WILD-TYPE | 485 | 332 | 502 | 253 |
P value = 9.02e-14 (Fisher's exact test), Q value = 1.4e-10
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 11(5Q11.2) MUTATED | 162 | 1211 |
DEL PEAK 11(5Q11.2) WILD-TYPE | 664 | 2526 |
P value = 4.61e-06 (t-test), Q value = 0.0065
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 758 | 46.7 (33.0) |
DEL PEAK 11(5Q11.2) MUTATED | 400 | 51.8 (34.8) |
DEL PEAK 11(5Q11.2) WILD-TYPE | 358 | 40.9 (29.9) |
P value = 3.29e-05 (Chi-square test), Q value = 0.045
nPatients | 1 | 2 | 3 | 4 | 5 | CURRENT REFORMED SMOKER FOR < OR = 15 YEARS | CURRENT REFORMED SMOKER FOR > 15 YEARS | CURRENT SMOKER | LIFELONG NON-SMOKER |
---|---|---|---|---|---|---|---|---|---|
ALL | 28 | 23 | 37 | 29 | 2 | 355 | 217 | 250 | 128 |
DEL PEAK 11(5Q11.2) MUTATED | 13 | 8 | 22 | 17 | 0 | 206 | 98 | 136 | 42 |
DEL PEAK 11(5Q11.2) WILD-TYPE | 15 | 15 | 15 | 12 | 2 | 149 | 119 | 114 | 86 |
P value = 1.73e-05 (Chi-square test), Q value = 0.024
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE TIS | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 72 | 62 | 7 | 43 | 287 | 186 | 42 | 124 | 25 | 41 | 59 | 1 | 16 |
DEL PEAK 11(5Q11.2) MUTATED | 19 | 10 | 3 | 24 | 79 | 51 | 11 | 31 | 5 | 7 | 30 | 1 | 3 |
DEL PEAK 11(5Q11.2) WILD-TYPE | 53 | 52 | 4 | 19 | 208 | 135 | 31 | 93 | 20 | 34 | 29 | 0 | 13 |
Cluster Labels | DEL PEAK 12(5Q21.3) MUTATED | DEL PEAK 12(5Q21.3) WILD-TYPE |
---|---|---|
Number of samples | 1388 | 3175 |
P value = 2.24e-178 (Chi-square test), Q value = 4e-175
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 12(5Q21.3) MUTATED | 63 | 43 | 212 | 117 | 67 | 128 | 5 | 388 | 2 | 311 | 1 | 51 |
DEL PEAK 12(5Q21.3) WILD-TYPE | 62 | 501 | 634 | 295 | 380 | 191 | 488 | 274 | 0 | 237 | 1 | 108 |
P value = 1.22e-05 (t-test), Q value = 0.017
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 640 | 73.6 (23.9) |
DEL PEAK 12(5Q21.3) MUTATED | 149 | 64.0 (32.1) |
DEL PEAK 12(5Q21.3) WILD-TYPE | 491 | 76.5 (20.0) |
P value = 9.1e-152 (Chi-square test), Q value = 1.6e-148
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 12(5Q21.3) MUTATED | 107 | 10 | 23 | 128 | 5 | 4 | 33 | 86 | 5 | 0 | 3 | 1 | 2 | 1 | 5 | 1 | 0 | 1 | 2 | 243 | 3 | 1 | 48 | 2 | 314 | 41 | 0 | 0 |
DEL PEAK 12(5Q21.3) WILD-TYPE | 249 | 44 | 327 | 191 | 488 | 6 | 42 | 119 | 2 | 3 | 12 | 1 | 1 | 1 | 8 | 0 | 1 | 0 | 0 | 72 | 15 | 6 | 95 | 11 | 238 | 38 | 1 | 20 |
P value = 7.7e-16 (Fisher's exact test), Q value = 1.2e-12
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 12(5Q21.3) MUTATED | 121 | 285 | 179 | 86 |
DEL PEAK 12(5Q21.3) WILD-TYPE | 345 | 347 | 515 | 123 |
P value = 3.6e-05 (Fisher's exact test), Q value = 0.048
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 1067 | 353 | 282 | 11 |
DEL PEAK 12(5Q21.3) MUTATED | 360 | 165 | 118 | 6 |
DEL PEAK 12(5Q21.3) WILD-TYPE | 707 | 188 | 164 | 5 |
P value = 4.68e-05 (Chi-square test), Q value = 0.063
nPatients | M0 | M1 | M1A | M1B | MX |
---|---|---|---|---|---|
ALL | 1424 | 168 | 9 | 3 | 165 |
DEL PEAK 12(5Q21.3) MUTATED | 448 | 40 | 6 | 1 | 76 |
DEL PEAK 12(5Q21.3) WILD-TYPE | 976 | 128 | 3 | 2 | 89 |
P value = 1.55e-14 (Fisher's exact test), Q value = 2.4e-11
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 12(5Q21.3) MUTATED | 162 | 1226 |
DEL PEAK 12(5Q21.3) WILD-TYPE | 664 | 2511 |
P value = 6.54e-06 (Chi-square test), Q value = 0.0091
nPatients | 1 | 2 | 3 | 4 | 5 | CURRENT REFORMED SMOKER FOR < OR = 15 YEARS | CURRENT REFORMED SMOKER FOR > 15 YEARS | CURRENT SMOKER | LIFELONG NON-SMOKER |
---|---|---|---|---|---|---|---|---|---|
ALL | 28 | 23 | 37 | 29 | 2 | 355 | 217 | 250 | 128 |
DEL PEAK 12(5Q21.3) MUTATED | 13 | 10 | 21 | 15 | 1 | 213 | 103 | 146 | 40 |
DEL PEAK 12(5Q21.3) WILD-TYPE | 15 | 13 | 16 | 14 | 1 | 142 | 114 | 104 | 88 |
Cluster Labels | DEL PEAK 13(6P25.3) MUTATED | DEL PEAK 13(6P25.3) WILD-TYPE |
---|---|---|
Number of samples | 780 | 3783 |
P value = 4.71e-16 (Chi-square test), Q value = 7.4e-13
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 13(6P25.3) MUTATED | 32 | 84 | 157 | 54 | 14 | 64 | 93 | 132 | 0 | 126 | 0 | 21 |
DEL PEAK 13(6P25.3) WILD-TYPE | 93 | 460 | 689 | 358 | 433 | 255 | 400 | 530 | 2 | 422 | 2 | 138 |
P value = 6.41e-05 (Fisher's exact test), Q value = 0.085
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 13(6P25.3) MUTATED | 443 | 337 |
DEL PEAK 13(6P25.3) WILD-TYPE | 2438 | 1345 |
P value = 1.37e-13 (Chi-square test), Q value = 2.1e-10
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 13(6P25.3) MUTATED | 49 | 5 | 6 | 64 | 93 | 1 | 9 | 31 | 2 | 0 | 2 | 0 | 0 | 0 | 3 | 1 | 0 | 0 | 0 | 82 | 1 | 1 | 18 | 3 | 126 | 7 | 0 | 5 |
DEL PEAK 13(6P25.3) WILD-TYPE | 307 | 49 | 344 | 255 | 400 | 9 | 66 | 174 | 5 | 3 | 13 | 2 | 3 | 2 | 10 | 0 | 1 | 1 | 2 | 233 | 17 | 6 | 125 | 10 | 426 | 72 | 1 | 15 |
Cluster Labels | DEL PEAK 14(6Q22.31) MUTATED | DEL PEAK 14(6Q22.31) WILD-TYPE |
---|---|---|
Number of samples | 1326 | 3237 |
P value = 9.36e-93 (Chi-square test), Q value = 1.6e-89
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 14(6Q22.31) MUTATED | 49 | 152 | 254 | 57 | 23 | 54 | 138 | 252 | 2 | 315 | 2 | 25 |
DEL PEAK 14(6Q22.31) WILD-TYPE | 76 | 392 | 592 | 355 | 424 | 265 | 355 | 410 | 0 | 233 | 0 | 134 |
P value = 6.04e-98 (Chi-square test), Q value = 1e-94
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 14(6Q22.31) MUTATED | 49 | 8 | 5 | 54 | 138 | 4 | 43 | 102 | 2 | 2 | 9 | 1 | 1 | 0 | 7 | 1 | 0 | 0 | 1 | 77 | 2 | 2 | 19 | 6 | 319 | 16 | 1 | 8 |
DEL PEAK 14(6Q22.31) WILD-TYPE | 307 | 46 | 345 | 265 | 355 | 6 | 32 | 103 | 5 | 1 | 6 | 1 | 2 | 2 | 6 | 0 | 1 | 1 | 1 | 238 | 16 | 5 | 124 | 7 | 233 | 63 | 0 | 12 |
P value = 0.000134 (Fisher's exact test), Q value = 0.17
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 14(6Q22.31) MUTATED | 132 | 193 | 141 | 50 |
DEL PEAK 14(6Q22.31) WILD-TYPE | 334 | 439 | 553 | 159 |
P value = 3.25e-09 (Fisher's exact test), Q value = 4.8e-06
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 14(6Q22.31) MUTATED | 215 | 127 | 360 | 123 |
DEL PEAK 14(6Q22.31) WILD-TYPE | 497 | 371 | 521 | 300 |
Cluster Labels | DEL PEAK 15(6Q26) MUTATED | DEL PEAK 15(6Q26) WILD-TYPE |
---|---|---|
Number of samples | 1441 | 3122 |
P value = 5.89e-06 (t-test), Q value = 0.0082
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 4507 | 61.9 (12.6) |
DEL PEAK 15(6Q26) MUTATED | 1416 | 60.6 (12.4) |
DEL PEAK 15(6Q26) WILD-TYPE | 3091 | 62.4 (12.7) |
P value = 5.42e-104 (Chi-square test), Q value = 9.4e-101
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 15(6Q26) MUTATED | 54 | 162 | 287 | 60 | 35 | 55 | 142 | 263 | 1 | 351 | 1 | 28 |
DEL PEAK 15(6Q26) WILD-TYPE | 71 | 382 | 559 | 352 | 412 | 264 | 351 | 399 | 1 | 197 | 1 | 131 |
P value = 6.56e-108 (Chi-square test), Q value = 1.1e-104
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 15(6Q26) MUTATED | 52 | 8 | 12 | 55 | 142 | 4 | 43 | 105 | 2 | 2 | 7 | 1 | 1 | 0 | 8 | 1 | 0 | 0 | 1 | 86 | 3 | 2 | 22 | 6 | 353 | 20 | 1 | 11 |
DEL PEAK 15(6Q26) WILD-TYPE | 304 | 46 | 338 | 264 | 351 | 6 | 32 | 100 | 5 | 1 | 8 | 1 | 2 | 2 | 5 | 0 | 1 | 1 | 1 | 229 | 15 | 5 | 121 | 7 | 199 | 59 | 0 | 9 |
P value = 1.13e-12 (Fisher's exact test), Q value = 1.7e-09
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 15(6Q26) MUTATED | 221 | 129 | 392 | 138 |
DEL PEAK 15(6Q26) WILD-TYPE | 491 | 369 | 489 | 285 |
Cluster Labels | DEL PEAK 16(7P22.3) MUTATED | DEL PEAK 16(7P22.3) WILD-TYPE |
---|---|---|
Number of samples | 511 | 4052 |
P value = 1.43e-143 (Chi-square test), Q value = 2.5e-140
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 16(7P22.3) MUTATED | 7 | 13 | 114 | 2 | 56 | 17 | 2 | 68 | 0 | 229 | 1 | 2 |
DEL PEAK 16(7P22.3) WILD-TYPE | 118 | 531 | 732 | 410 | 391 | 302 | 491 | 594 | 2 | 319 | 1 | 157 |
P value = 1.29e-27 (Fisher's exact test), Q value = 2.1e-24
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 16(7P22.3) MUTATED | 429 | 82 |
DEL PEAK 16(7P22.3) WILD-TYPE | 2452 | 1600 |
P value = 8.12e-127 (Chi-square test), Q value = 1.4e-123
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 16(7P22.3) MUTATED | 2 | 0 | 21 | 17 | 2 | 0 | 4 | 15 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 0 | 45 | 4 | 0 | 1 | 1 | 230 | 31 | 0 | 0 |
DEL PEAK 16(7P22.3) WILD-TYPE | 354 | 54 | 329 | 302 | 491 | 10 | 71 | 190 | 6 | 3 | 15 | 2 | 3 | 2 | 11 | 0 | 1 | 1 | 2 | 270 | 14 | 7 | 142 | 12 | 322 | 48 | 1 | 20 |
P value = 3.28e-07 (Fisher's exact test), Q value = 0.00048
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 16(7P22.3) MUTATED | 16 | 49 | 11 | 12 |
DEL PEAK 16(7P22.3) WILD-TYPE | 450 | 583 | 683 | 197 |
P value = 5.75e-29 (Fisher's exact test), Q value = 9.3e-26
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 16(7P22.3) MUTATED | 38 | 30 | 200 | 46 |
DEL PEAK 16(7P22.3) WILD-TYPE | 674 | 468 | 681 | 377 |
Cluster Labels | DEL PEAK 17(7Q36.1) MUTATED | DEL PEAK 17(7Q36.1) WILD-TYPE |
---|---|---|
Number of samples | 530 | 4033 |
P value = 1.07e-56 (Chi-square test), Q value = 1.8e-53
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 17(7Q36.1) MUTATED | 14 | 8 | 171 | 8 | 50 | 80 | 6 | 117 | 0 | 67 | 1 | 8 |
DEL PEAK 17(7Q36.1) WILD-TYPE | 111 | 536 | 675 | 404 | 397 | 239 | 487 | 545 | 2 | 481 | 1 | 151 |
P value = 1.29e-52 (Chi-square test), Q value = 2.2e-49
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 17(7Q36.1) MUTATED | 7 | 1 | 12 | 80 | 6 | 0 | 6 | 32 | 2 | 0 | 2 | 1 | 1 | 0 | 3 | 0 | 0 | 0 | 0 | 67 | 4 | 3 | 5 | 3 | 68 | 34 | 0 | 0 |
DEL PEAK 17(7Q36.1) WILD-TYPE | 349 | 53 | 338 | 239 | 487 | 10 | 69 | 173 | 5 | 3 | 13 | 1 | 2 | 2 | 10 | 1 | 1 | 1 | 2 | 248 | 14 | 4 | 138 | 10 | 484 | 45 | 1 | 20 |
P value = 8.06e-11 (Fisher's exact test), Q value = 1.2e-07
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 17(7Q36.1) MUTATED | 36 | 98 | 38 | 36 |
DEL PEAK 17(7Q36.1) WILD-TYPE | 430 | 534 | 656 | 173 |
Cluster Labels | DEL PEAK 18(8P23.2) MUTATED | DEL PEAK 18(8P23.2) WILD-TYPE |
---|---|---|
Number of samples | 2024 | 2539 |
P value = 9.18e-132 (Chi-square test), Q value = 1.6e-128
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 18(8P23.2) MUTATED | 67 | 65 | 449 | 172 | 81 | 183 | 146 | 390 | 2 | 367 | 2 | 98 |
DEL PEAK 18(8P23.2) WILD-TYPE | 58 | 479 | 397 | 240 | 366 | 136 | 347 | 272 | 0 | 181 | 0 | 61 |
P value = 7.72e-05 (t-test), Q value = 0.1
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 640 | 73.6 (23.9) |
DEL PEAK 18(8P23.2) MUTATED | 183 | 66.2 (32.4) |
DEL PEAK 18(8P23.2) WILD-TYPE | 457 | 76.5 (18.8) |
P value = 6.41e-91 (Chi-square test), Q value = 1.1e-87
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 18(8P23.2) MUTATED | 156 | 15 | 28 | 183 | 146 | 4 | 31 | 108 | 4 | 0 | 9 | 2 | 3 | 0 | 6 | 1 | 0 | 0 | 2 | 220 | 4 | 0 | 89 | 7 | 371 | 49 | 0 | 4 |
DEL PEAK 18(8P23.2) WILD-TYPE | 200 | 39 | 322 | 136 | 347 | 6 | 44 | 97 | 3 | 3 | 6 | 0 | 0 | 2 | 7 | 0 | 1 | 1 | 0 | 95 | 14 | 7 | 54 | 6 | 181 | 30 | 1 | 16 |
P value = 1.44e-05 (Fisher's exact test), Q value = 0.02
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 18(8P23.2) MUTATED | 189 | 341 | 327 | 118 |
DEL PEAK 18(8P23.2) WILD-TYPE | 277 | 291 | 367 | 91 |
P value = 1.37e-08 (Fisher's exact test), Q value = 2e-05
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 1067 | 353 | 282 | 11 |
DEL PEAK 18(8P23.2) MUTATED | 480 | 205 | 175 | 8 |
DEL PEAK 18(8P23.2) WILD-TYPE | 587 | 148 | 107 | 3 |
P value = 6.41e-08 (Fisher's exact test), Q value = 9.4e-05
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 18(8P23.2) MUTATED | 321 | 245 | 517 | 245 |
DEL PEAK 18(8P23.2) WILD-TYPE | 391 | 253 | 364 | 178 |
P value = 2.07e-21 (Fisher's exact test), Q value = 3.3e-18
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 18(8P23.2) MUTATED | 245 | 1779 |
DEL PEAK 18(8P23.2) WILD-TYPE | 581 | 1958 |
Cluster Labels | DEL PEAK 19(8P21.2) MUTATED | DEL PEAK 19(8P21.2) WILD-TYPE |
---|---|---|
Number of samples | 2041 | 2522 |
P value = 1.38e-135 (Chi-square test), Q value = 2.4e-132
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 19(8P21.2) MUTATED | 70 | 66 | 462 | 179 | 80 | 161 | 148 | 393 | 2 | 382 | 2 | 94 |
DEL PEAK 19(8P21.2) WILD-TYPE | 55 | 478 | 384 | 233 | 367 | 158 | 345 | 269 | 0 | 166 | 0 | 65 |
P value = 1.6e-05 (t-test), Q value = 0.022
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 640 | 73.6 (23.9) |
DEL PEAK 19(8P21.2) MUTATED | 188 | 65.7 (32.3) |
DEL PEAK 19(8P21.2) WILD-TYPE | 452 | 76.8 (18.5) |
P value = 1.04e-93 (Chi-square test), Q value = 1.8e-90
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 19(8P21.2) MUTATED | 163 | 15 | 22 | 161 | 148 | 4 | 35 | 115 | 4 | 0 | 9 | 2 | 3 | 0 | 9 | 1 | 0 | 0 | 2 | 209 | 5 | 0 | 85 | 7 | 386 | 53 | 0 | 5 |
DEL PEAK 19(8P21.2) WILD-TYPE | 193 | 39 | 328 | 158 | 345 | 6 | 40 | 90 | 3 | 3 | 6 | 0 | 0 | 2 | 4 | 0 | 1 | 1 | 0 | 106 | 13 | 7 | 58 | 6 | 166 | 26 | 1 | 15 |
P value = 1.99e-08 (Fisher's exact test), Q value = 2.9e-05
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 1067 | 353 | 282 | 11 |
DEL PEAK 19(8P21.2) MUTATED | 473 | 203 | 172 | 8 |
DEL PEAK 19(8P21.2) WILD-TYPE | 594 | 150 | 110 | 3 |
P value = 1.36e-10 (Fisher's exact test), Q value = 2.1e-07
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 19(8P21.2) MUTATED | 319 | 235 | 534 | 240 |
DEL PEAK 19(8P21.2) WILD-TYPE | 393 | 263 | 347 | 183 |
P value = 1.62e-22 (Fisher's exact test), Q value = 2.6e-19
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 19(8P21.2) MUTATED | 245 | 1796 |
DEL PEAK 19(8P21.2) WILD-TYPE | 581 | 1941 |
Cluster Labels | DEL PEAK 20(9P23) MUTATED | DEL PEAK 20(9P23) WILD-TYPE |
---|---|---|
Number of samples | 1611 | 2952 |
P value = 0 (logrank test), Q value = 0
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 4296 | 1401 | 0.0 - 224.0 (14.9) |
DEL PEAK 20(9P23) MUTATED | 1530 | 623 | 0.0 - 163.1 (14.2) |
DEL PEAK 20(9P23) WILD-TYPE | 2766 | 778 | 0.0 - 224.0 (15.0) |
P value = 2.13e-93 (Chi-square test), Q value = 3.7e-90
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 20(9P23) MUTATED | 57 | 232 | 261 | 53 | 51 | 149 | 144 | 390 | 1 | 245 | 2 | 25 |
DEL PEAK 20(9P23) WILD-TYPE | 68 | 312 | 585 | 359 | 396 | 170 | 349 | 272 | 1 | 303 | 0 | 134 |
P value = 2.44e-10 (Fisher's exact test), Q value = 3.7e-07
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 20(9P23) MUTATED | 918 | 693 |
DEL PEAK 20(9P23) WILD-TYPE | 1963 | 989 |
P value = 2.4e-86 (Chi-square test), Q value = 4.1e-83
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 20(9P23) MUTATED | 49 | 4 | 20 | 149 | 144 | 6 | 42 | 110 | 3 | 1 | 11 | 1 | 3 | 1 | 5 | 1 | 0 | 0 | 1 | 203 | 3 | 2 | 24 | 1 | 248 | 28 | 0 | 10 |
DEL PEAK 20(9P23) WILD-TYPE | 307 | 50 | 330 | 170 | 349 | 4 | 33 | 95 | 4 | 2 | 4 | 1 | 0 | 1 | 8 | 0 | 1 | 1 | 1 | 112 | 15 | 5 | 119 | 12 | 304 | 51 | 1 | 10 |
P value = 2.04e-10 (Fisher's exact test), Q value = 3.1e-07
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 20(9P23) MUTATED | 171 | 292 | 195 | 85 |
DEL PEAK 20(9P23) WILD-TYPE | 295 | 340 | 499 | 124 |
Cluster Labels | DEL PEAK 21(9P21.3) MUTATED | DEL PEAK 21(9P21.3) WILD-TYPE |
---|---|---|
Number of samples | 1887 | 2676 |
P value = 0 (logrank test), Q value = 0
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 4296 | 1401 | 0.0 - 224.0 (14.9) |
DEL PEAK 21(9P21.3) MUTATED | 1795 | 790 | 0.0 - 177.0 (13.3) |
DEL PEAK 21(9P21.3) WILD-TYPE | 2501 | 611 | 0.0 - 224.0 (15.9) |
P value = 4.81e-163 (Chi-square test), Q value = 8.6e-160
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 21(9P21.3) MUTATED | 70 | 405 | 289 | 56 | 57 | 160 | 148 | 429 | 1 | 245 | 2 | 24 |
DEL PEAK 21(9P21.3) WILD-TYPE | 55 | 139 | 557 | 356 | 390 | 159 | 345 | 233 | 1 | 303 | 0 | 135 |
P value = 4.97e-22 (Fisher's exact test), Q value = 7.9e-19
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 21(9P21.3) MUTATED | 1036 | 851 |
DEL PEAK 21(9P21.3) WILD-TYPE | 1845 | 831 |
P value = 4.9e-110 (Chi-square test), Q value = 8.6e-107
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 21(9P21.3) MUTATED | 52 | 4 | 21 | 160 | 148 | 5 | 41 | 114 | 3 | 3 | 10 | 1 | 3 | 1 | 6 | 1 | 0 | 0 | 2 | 237 | 3 | 2 | 23 | 1 | 248 | 33 | 1 | 16 |
DEL PEAK 21(9P21.3) WILD-TYPE | 304 | 50 | 329 | 159 | 345 | 5 | 34 | 91 | 4 | 0 | 5 | 1 | 0 | 1 | 7 | 0 | 1 | 1 | 0 | 78 | 15 | 5 | 120 | 12 | 304 | 46 | 0 | 4 |
P value = 7.47e-17 (Fisher's exact test), Q value = 1.2e-13
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 21(9P21.3) MUTATED | 184 | 331 | 199 | 86 |
DEL PEAK 21(9P21.3) WILD-TYPE | 282 | 301 | 495 | 123 |
P value = 4.55e-07 (Fisher's exact test), Q value = 0.00066
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 21(9P21.3) MUTATED | 407 | 1480 |
DEL PEAK 21(9P21.3) WILD-TYPE | 419 | 2257 |
P value = 4.59e-05 (Chi-square test), Q value = 0.062
nPatients | N0 | N0 (I+) | N0 (I-) | N0 (MOL+) | N1 | N1A | N1B | N1C | N1MI | N2 | N2A | N3 | N3A | N3B | N3C | NX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 316 | 22 | 127 | 1 | 115 | 124 | 32 | 2 | 22 | 75 | 53 | 23 | 30 | 2 | 1 | 24 |
DEL PEAK 21(9P21.3) MUTATED | 131 | 3 | 29 | 0 | 38 | 38 | 8 | 0 | 7 | 42 | 23 | 9 | 16 | 0 | 1 | 12 |
DEL PEAK 21(9P21.3) WILD-TYPE | 185 | 19 | 98 | 1 | 77 | 86 | 24 | 2 | 15 | 33 | 30 | 14 | 14 | 2 | 0 | 12 |
P value = 4.69e-06 (Chi-square test), Q value = 0.0066
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE TIS | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 72 | 62 | 7 | 43 | 287 | 186 | 42 | 124 | 25 | 41 | 59 | 1 | 16 |
DEL PEAK 21(9P21.3) MUTATED | 22 | 15 | 2 | 22 | 87 | 56 | 24 | 55 | 17 | 18 | 31 | 0 | 6 |
DEL PEAK 21(9P21.3) WILD-TYPE | 50 | 47 | 5 | 21 | 200 | 130 | 18 | 69 | 8 | 23 | 28 | 1 | 10 |
Cluster Labels | DEL PEAK 22(9P21.3) MUTATED | DEL PEAK 22(9P21.3) WILD-TYPE |
---|---|---|
Number of samples | 1933 | 2630 |
P value = 0 (logrank test), Q value = 0
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 4296 | 1401 | 0.0 - 224.0 (14.9) |
DEL PEAK 22(9P21.3) MUTATED | 1837 | 812 | 0.0 - 177.0 (13.3) |
DEL PEAK 22(9P21.3) WILD-TYPE | 2459 | 589 | 0.0 - 224.0 (15.9) |
P value = 1.33e-172 (Chi-square test), Q value = 2.4e-169
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 22(9P21.3) MUTATED | 73 | 413 | 293 | 56 | 57 | 185 | 152 | 432 | 1 | 244 | 2 | 24 |
DEL PEAK 22(9P21.3) WILD-TYPE | 52 | 131 | 553 | 356 | 390 | 134 | 341 | 230 | 1 | 304 | 0 | 135 |
P value = 9.41e-26 (Fisher's exact test), Q value = 1.5e-22
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 22(9P21.3) MUTATED | 1051 | 882 |
DEL PEAK 22(9P21.3) WILD-TYPE | 1830 | 800 |
P value = 1.84e-116 (Chi-square test), Q value = 3.2e-113
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 22(9P21.3) MUTATED | 52 | 4 | 21 | 185 | 152 | 5 | 41 | 116 | 3 | 2 | 10 | 1 | 3 | 1 | 6 | 1 | 0 | 0 | 2 | 239 | 3 | 2 | 23 | 1 | 247 | 33 | 1 | 16 |
DEL PEAK 22(9P21.3) WILD-TYPE | 304 | 50 | 329 | 134 | 341 | 5 | 34 | 89 | 4 | 1 | 5 | 1 | 0 | 1 | 7 | 0 | 1 | 1 | 0 | 76 | 15 | 5 | 120 | 12 | 305 | 46 | 0 | 4 |
P value = 6.88e-17 (Fisher's exact test), Q value = 1.1e-13
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 22(9P21.3) MUTATED | 184 | 337 | 209 | 100 |
DEL PEAK 22(9P21.3) WILD-TYPE | 282 | 295 | 485 | 109 |
P value = 3.32e-07 (Fisher's exact test), Q value = 0.00048
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 22(9P21.3) MUTATED | 416 | 1517 |
DEL PEAK 22(9P21.3) WILD-TYPE | 410 | 2220 |
P value = 1.99e-05 (Chi-square test), Q value = 0.027
nPatients | N0 | N0 (I+) | N0 (I-) | N0 (MOL+) | N1 | N1A | N1B | N1C | N1MI | N2 | N2A | N3 | N3A | N3B | N3C | NX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 316 | 22 | 127 | 1 | 115 | 124 | 32 | 2 | 22 | 75 | 53 | 23 | 30 | 2 | 1 | 24 |
DEL PEAK 22(9P21.3) MUTATED | 136 | 3 | 30 | 0 | 38 | 38 | 8 | 0 | 7 | 43 | 23 | 9 | 16 | 0 | 1 | 12 |
DEL PEAK 22(9P21.3) WILD-TYPE | 180 | 19 | 97 | 1 | 77 | 86 | 24 | 2 | 15 | 32 | 30 | 14 | 14 | 2 | 0 | 12 |
P value = 2.47e-06 (Chi-square test), Q value = 0.0035
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE TIS | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 72 | 62 | 7 | 43 | 287 | 186 | 42 | 124 | 25 | 41 | 59 | 1 | 16 |
DEL PEAK 22(9P21.3) MUTATED | 22 | 15 | 2 | 24 | 90 | 57 | 24 | 55 | 17 | 18 | 32 | 0 | 6 |
DEL PEAK 22(9P21.3) WILD-TYPE | 50 | 47 | 5 | 19 | 197 | 129 | 18 | 69 | 8 | 23 | 27 | 1 | 10 |
Cluster Labels | DEL PEAK 23(9Q21.11) MUTATED | DEL PEAK 23(9Q21.11) WILD-TYPE |
---|---|---|
Number of samples | 1301 | 3262 |
P value = 6.47e-07 (t-test), Q value = 0.00093
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 4507 | 61.9 (12.6) |
DEL PEAK 23(9Q21.11) MUTATED | 1273 | 63.3 (11.9) |
DEL PEAK 23(9Q21.11) WILD-TYPE | 3234 | 61.3 (12.9) |
P value = 4.31e-84 (Chi-square test), Q value = 7.4e-81
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 23(9Q21.11) MUTATED | 53 | 72 | 232 | 49 | 91 | 50 | 143 | 320 | 2 | 262 | 2 | 23 |
DEL PEAK 23(9Q21.11) WILD-TYPE | 72 | 472 | 614 | 363 | 356 | 269 | 350 | 342 | 0 | 286 | 0 | 136 |
P value = 2.98e-72 (Chi-square test), Q value = 5.1e-69
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 23(9Q21.11) MUTATED | 47 | 2 | 38 | 50 | 143 | 4 | 28 | 111 | 3 | 0 | 9 | 1 | 3 | 0 | 4 | 0 | 0 | 1 | 2 | 152 | 7 | 2 | 21 | 1 | 266 | 46 | 0 | 5 |
DEL PEAK 23(9Q21.11) WILD-TYPE | 309 | 52 | 312 | 269 | 350 | 6 | 47 | 94 | 4 | 3 | 6 | 1 | 0 | 2 | 9 | 1 | 1 | 0 | 0 | 163 | 11 | 5 | 122 | 12 | 286 | 33 | 1 | 15 |
P value = 1.53e-10 (Fisher's exact test), Q value = 2.3e-07
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 23(9Q21.11) MUTATED | 148 | 236 | 153 | 41 |
DEL PEAK 23(9Q21.11) WILD-TYPE | 318 | 396 | 541 | 168 |
P value = 6.01e-09 (Fisher's exact test), Q value = 8.9e-06
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 23(9Q21.11) MUTATED | 240 | 134 | 354 | 106 |
DEL PEAK 23(9Q21.11) WILD-TYPE | 472 | 364 | 527 | 317 |
P value = 2.53e-13 (Fisher's exact test), Q value = 3.9e-10
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 23(9Q21.11) MUTATED | 152 | 1149 |
DEL PEAK 23(9Q21.11) WILD-TYPE | 674 | 2588 |
Cluster Labels | DEL PEAK 24(9Q34.3) MUTATED | DEL PEAK 24(9Q34.3) WILD-TYPE |
---|---|---|
Number of samples | 1335 | 3228 |
P value = 1.7e-96 (Chi-square test), Q value = 2.9e-93
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 24(9Q34.3) MUTATED | 45 | 73 | 230 | 49 | 100 | 45 | 149 | 288 | 1 | 321 | 2 | 30 |
DEL PEAK 24(9Q34.3) WILD-TYPE | 80 | 471 | 616 | 363 | 347 | 274 | 344 | 374 | 1 | 227 | 0 | 129 |
P value = 2.59e-82 (Chi-square test), Q value = 4.4e-79
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 24(9Q34.3) MUTATED | 47 | 2 | 45 | 45 | 149 | 3 | 24 | 87 | 3 | 0 | 9 | 1 | 3 | 0 | 4 | 0 | 0 | 0 | 2 | 150 | 8 | 2 | 29 | 1 | 324 | 47 | 0 | 6 |
DEL PEAK 24(9Q34.3) WILD-TYPE | 309 | 52 | 305 | 274 | 344 | 7 | 51 | 118 | 4 | 3 | 6 | 1 | 0 | 2 | 9 | 1 | 1 | 1 | 0 | 165 | 10 | 5 | 114 | 12 | 228 | 32 | 1 | 14 |
P value = 1.11e-09 (Fisher's exact test), Q value = 1.7e-06
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 24(9Q34.3) MUTATED | 136 | 228 | 159 | 34 |
DEL PEAK 24(9Q34.3) WILD-TYPE | 330 | 404 | 535 | 175 |
P value = 5.06e-12 (Fisher's exact test), Q value = 7.7e-09
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 24(9Q34.3) MUTATED | 222 | 135 | 389 | 125 |
DEL PEAK 24(9Q34.3) WILD-TYPE | 490 | 363 | 492 | 298 |
P value = 4.15e-14 (Fisher's exact test), Q value = 6.4e-11
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 24(9Q34.3) MUTATED | 155 | 1180 |
DEL PEAK 24(9Q34.3) WILD-TYPE | 671 | 2557 |
Cluster Labels | DEL PEAK 25(10P15.3) MUTATED | DEL PEAK 25(10P15.3) WILD-TYPE |
---|---|---|
Number of samples | 1226 | 3337 |
P value = 0 (logrank test), Q value = 0
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 4296 | 1401 | 0.0 - 224.0 (14.9) |
DEL PEAK 25(10P15.3) MUTATED | 1184 | 570 | 0.0 - 177.4 (11.7) |
DEL PEAK 25(10P15.3) WILD-TYPE | 3112 | 831 | 0.0 - 224.0 (16.7) |
P value = 2.23e-243 (Chi-square test), Q value = 4e-240
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 25(10P15.3) MUTATED | 20 | 449 | 106 | 68 | 30 | 108 | 62 | 234 | 1 | 114 | 0 | 33 |
DEL PEAK 25(10P15.3) WILD-TYPE | 105 | 95 | 740 | 344 | 417 | 211 | 431 | 428 | 1 | 434 | 2 | 126 |
P value = 5.68e-26 (Fisher's exact test), Q value = 9.2e-23
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 25(10P15.3) MUTATED | 620 | 606 |
DEL PEAK 25(10P15.3) WILD-TYPE | 2261 | 1076 |
P value = 1.75e-48 (Chi-square test), Q value = 2.9e-45
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 25(10P15.3) MUTATED | 61 | 7 | 11 | 108 | 62 | 3 | 12 | 60 | 5 | 1 | 4 | 0 | 1 | 0 | 3 | 1 | 0 | 0 | 0 | 142 | 1 | 2 | 29 | 4 | 115 | 18 | 1 | 16 |
DEL PEAK 25(10P15.3) WILD-TYPE | 295 | 47 | 339 | 211 | 431 | 7 | 63 | 145 | 2 | 2 | 11 | 2 | 2 | 2 | 10 | 0 | 1 | 1 | 2 | 173 | 17 | 5 | 114 | 9 | 437 | 61 | 0 | 4 |
P value = 4.88e-08 (Fisher's exact test), Q value = 7.1e-05
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 25(10P15.3) MUTATED | 97 | 196 | 132 | 69 |
DEL PEAK 25(10P15.3) WILD-TYPE | 369 | 436 | 562 | 140 |
P value = 6.01e-35 (Fisher's exact test), Q value = 9.9e-32
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 25(10P15.3) MUTATED | 370 | 856 |
DEL PEAK 25(10P15.3) WILD-TYPE | 456 | 2881 |
Cluster Labels | DEL PEAK 26(10Q23.31) MUTATED | DEL PEAK 26(10Q23.31) WILD-TYPE |
---|---|---|
Number of samples | 1624 | 2939 |
P value = 0 (logrank test), Q value = 0
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 4296 | 1401 | 0.0 - 224.0 (14.9) |
DEL PEAK 26(10Q23.31) MUTATED | 1549 | 687 | 0.0 - 211.5 (12.1) |
DEL PEAK 26(10Q23.31) WILD-TYPE | 2747 | 714 | 0.0 - 224.0 (16.8) |
P value = 5.45e-192 (Chi-square test), Q value = 9.8e-189
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 26(10Q23.31) MUTATED | 53 | 486 | 245 | 94 | 53 | 82 | 90 | 256 | 1 | 212 | 1 | 50 |
DEL PEAK 26(10Q23.31) WILD-TYPE | 72 | 58 | 601 | 318 | 394 | 237 | 403 | 406 | 1 | 336 | 1 | 109 |
P value = 2e-11 (Fisher's exact test), Q value = 3e-08
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 26(10Q23.31) MUTATED | 920 | 704 |
DEL PEAK 26(10Q23.31) WILD-TYPE | 1961 | 978 |
P value = 2.68e-46 (Chi-square test), Q value = 4.5e-43
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 26(10Q23.31) MUTATED | 85 | 8 | 28 | 82 | 90 | 3 | 13 | 60 | 4 | 1 | 4 | 0 | 3 | 0 | 3 | 1 | 0 | 1 | 2 | 159 | 3 | 2 | 41 | 7 | 214 | 22 | 1 | 19 |
DEL PEAK 26(10Q23.31) WILD-TYPE | 271 | 46 | 322 | 237 | 403 | 7 | 62 | 145 | 3 | 2 | 11 | 2 | 0 | 2 | 10 | 0 | 1 | 0 | 0 | 156 | 15 | 5 | 102 | 6 | 338 | 57 | 0 | 1 |
P value = 7.31e-30 (Fisher's exact test), Q value = 1.2e-26
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 26(10Q23.31) MUTATED | 438 | 1186 |
DEL PEAK 26(10Q23.31) WILD-TYPE | 388 | 2551 |
P value = 4.3e-05 (t-test), Q value = 0.058
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 566 | 1962.6 (12.7) |
DEL PEAK 26(10Q23.31) MUTATED | 193 | 1959.7 (10.7) |
DEL PEAK 26(10Q23.31) WILD-TYPE | 373 | 1964.0 (13.3) |
Cluster Labels | DEL PEAK 27(10Q26.3) MUTATED | DEL PEAK 27(10Q26.3) WILD-TYPE |
---|---|---|
Number of samples | 1543 | 3020 |
P value = 0 (logrank test), Q value = 0
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 4296 | 1401 | 0.0 - 224.0 (14.9) |
DEL PEAK 27(10Q26.3) MUTATED | 1471 | 675 | 0.0 - 211.5 (12.0) |
DEL PEAK 27(10Q26.3) WILD-TYPE | 2825 | 726 | 0.0 - 224.0 (16.9) |
P value = 1.08e-206 (Chi-square test), Q value = 1.9e-203
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 27(10Q26.3) MUTATED | 45 | 487 | 246 | 89 | 34 | 74 | 94 | 241 | 0 | 185 | 1 | 46 |
DEL PEAK 27(10Q26.3) WILD-TYPE | 80 | 57 | 600 | 323 | 413 | 245 | 399 | 421 | 2 | 363 | 1 | 113 |
P value = 4.45e-13 (Fisher's exact test), Q value = 6.9e-10
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 27(10Q26.3) MUTATED | 862 | 681 |
DEL PEAK 27(10Q26.3) WILD-TYPE | 2019 | 1001 |
P value = 1.8e-40 (Chi-square test), Q value = 3e-37
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 27(10Q26.3) MUTATED | 81 | 8 | 20 | 74 | 94 | 3 | 15 | 59 | 3 | 1 | 5 | 0 | 2 | 0 | 3 | 0 | 0 | 1 | 1 | 146 | 2 | 2 | 38 | 6 | 186 | 12 | 1 | 20 |
DEL PEAK 27(10Q26.3) WILD-TYPE | 275 | 46 | 330 | 245 | 399 | 7 | 60 | 146 | 4 | 2 | 10 | 2 | 1 | 2 | 10 | 1 | 1 | 0 | 1 | 169 | 16 | 5 | 105 | 7 | 366 | 67 | 0 | 0 |
P value = 7.57e-34 (Fisher's exact test), Q value = 1.2e-30
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 27(10Q26.3) MUTATED | 432 | 1111 |
DEL PEAK 27(10Q26.3) WILD-TYPE | 394 | 2626 |
Cluster Labels | DEL PEAK 28(11P15.5) MUTATED | DEL PEAK 28(11P15.5) WILD-TYPE |
---|---|---|
Number of samples | 1279 | 3284 |
P value = 1.64e-115 (Chi-square test), Q value = 2.9e-112
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 28(11P15.5) MUTATED | 62 | 125 | 248 | 54 | 77 | 100 | 17 | 245 | 0 | 327 | 0 | 23 |
DEL PEAK 28(11P15.5) WILD-TYPE | 63 | 419 | 598 | 358 | 370 | 219 | 476 | 417 | 2 | 221 | 2 | 136 |
P value = 3.54e-05 (Fisher's exact test), Q value = 0.048
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 28(11P15.5) MUTATED | 868 | 411 |
DEL PEAK 28(11P15.5) WILD-TYPE | 2013 | 1271 |
P value = 1.03e-121 (Chi-square test), Q value = 1.8e-118
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 28(11P15.5) MUTATED | 47 | 7 | 28 | 100 | 17 | 1 | 21 | 59 | 4 | 0 | 4 | 2 | 0 | 0 | 2 | 1 | 0 | 1 | 0 | 149 | 5 | 1 | 19 | 3 | 327 | 44 | 0 | 6 |
DEL PEAK 28(11P15.5) WILD-TYPE | 309 | 47 | 322 | 219 | 476 | 9 | 54 | 146 | 3 | 3 | 11 | 0 | 3 | 2 | 11 | 0 | 1 | 0 | 2 | 166 | 13 | 6 | 124 | 10 | 225 | 35 | 1 | 14 |
P value = 1.72e-10 (Fisher's exact test), Q value = 2.6e-07
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 28(11P15.5) MUTATED | 73 | 179 | 106 | 59 |
DEL PEAK 28(11P15.5) WILD-TYPE | 393 | 453 | 588 | 150 |
P value = 2.77e-16 (Fisher's exact test), Q value = 4.3e-13
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 28(11P15.5) MUTATED | 157 | 106 | 346 | 128 |
DEL PEAK 28(11P15.5) WILD-TYPE | 555 | 392 | 535 | 295 |
P value = 0.000141 (Chi-square test), Q value = 0.18
nPatients | 1 | 2 | 3 | 4 | 5 | CURRENT REFORMED SMOKER FOR < OR = 15 YEARS | CURRENT REFORMED SMOKER FOR > 15 YEARS | CURRENT SMOKER | LIFELONG NON-SMOKER |
---|---|---|---|---|---|---|---|---|---|
ALL | 28 | 23 | 37 | 29 | 2 | 355 | 217 | 250 | 128 |
DEL PEAK 28(11P15.5) MUTATED | 16 | 11 | 19 | 11 | 1 | 147 | 63 | 94 | 28 |
DEL PEAK 28(11P15.5) WILD-TYPE | 12 | 12 | 18 | 18 | 1 | 208 | 154 | 156 | 100 |
Cluster Labels | DEL PEAK 29(11Q23.1) MUTATED | DEL PEAK 29(11Q23.1) WILD-TYPE |
---|---|---|
Number of samples | 1243 | 3320 |
P value = 9.65e-101 (Chi-square test), Q value = 1.7e-97
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 29(11Q23.1) MUTATED | 44 | 89 | 412 | 62 | 66 | 152 | 27 | 178 | 2 | 171 | 2 | 34 |
DEL PEAK 29(11Q23.1) WILD-TYPE | 81 | 455 | 434 | 350 | 381 | 167 | 466 | 484 | 0 | 377 | 0 | 125 |
P value = 0.000149 (Fisher's exact test), Q value = 0.19
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 29(11Q23.1) MUTATED | 840 | 403 |
DEL PEAK 29(11Q23.1) WILD-TYPE | 2041 | 1279 |
P value = 1.38e-53 (Chi-square test), Q value = 2.3e-50
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 29(11Q23.1) MUTATED | 55 | 7 | 27 | 152 | 27 | 1 | 21 | 43 | 4 | 0 | 3 | 1 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 99 | 6 | 2 | 27 | 6 | 175 | 33 | 0 | 5 |
DEL PEAK 29(11Q23.1) WILD-TYPE | 301 | 47 | 323 | 167 | 466 | 9 | 54 | 162 | 3 | 3 | 12 | 1 | 3 | 2 | 9 | 1 | 1 | 1 | 2 | 216 | 12 | 5 | 116 | 7 | 377 | 46 | 1 | 15 |
P value = 8.21e-10 (Fisher's exact test), Q value = 1.2e-06
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 29(11Q23.1) MUTATED | 70 | 159 | 122 | 74 |
DEL PEAK 29(11Q23.1) WILD-TYPE | 396 | 473 | 572 | 135 |
P value = 4.19e-09 (Fisher's exact test), Q value = 6.2e-06
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 1067 | 353 | 282 | 11 |
DEL PEAK 29(11Q23.1) MUTATED | 194 | 101 | 97 | 4 |
DEL PEAK 29(11Q23.1) WILD-TYPE | 873 | 252 | 185 | 7 |
P value = 4.35e-06 (Fisher's exact test), Q value = 0.0061
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 29(11Q23.1) MUTATED | 128 | 103 | 227 | 128 |
DEL PEAK 29(11Q23.1) WILD-TYPE | 584 | 395 | 654 | 295 |
Cluster Labels | DEL PEAK 30(11Q25) MUTATED | DEL PEAK 30(11Q25) WILD-TYPE |
---|---|---|
Number of samples | 1248 | 3315 |
P value = 9.57e-91 (Chi-square test), Q value = 1.6e-87
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 30(11Q25) MUTATED | 39 | 91 | 397 | 59 | 69 | 141 | 26 | 198 | 1 | 189 | 2 | 32 |
DEL PEAK 30(11Q25) WILD-TYPE | 86 | 453 | 449 | 353 | 378 | 178 | 467 | 464 | 1 | 359 | 0 | 127 |
P value = 8.64e-05 (Fisher's exact test), Q value = 0.11
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 30(11Q25) MUTATED | 845 | 403 |
DEL PEAK 30(11Q25) WILD-TYPE | 2036 | 1279 |
P value = 1.04e-58 (Chi-square test), Q value = 1.7e-55
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 30(11Q25) MUTATED | 53 | 6 | 27 | 141 | 26 | 1 | 20 | 43 | 4 | 0 | 3 | 1 | 0 | 0 | 4 | 0 | 0 | 1 | 1 | 118 | 5 | 2 | 25 | 6 | 192 | 37 | 0 | 4 |
DEL PEAK 30(11Q25) WILD-TYPE | 303 | 48 | 323 | 178 | 467 | 9 | 55 | 162 | 3 | 3 | 12 | 1 | 3 | 2 | 9 | 1 | 1 | 0 | 1 | 197 | 13 | 5 | 118 | 7 | 360 | 42 | 1 | 16 |
P value = 4.93e-11 (Fisher's exact test), Q value = 7.5e-08
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 30(11Q25) MUTATED | 72 | 174 | 118 | 72 |
DEL PEAK 30(11Q25) WILD-TYPE | 394 | 458 | 576 | 137 |
P value = 1.17e-09 (Fisher's exact test), Q value = 1.8e-06
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 1067 | 353 | 282 | 11 |
DEL PEAK 30(11Q25) MUTATED | 199 | 108 | 99 | 3 |
DEL PEAK 30(11Q25) WILD-TYPE | 868 | 245 | 183 | 8 |
P value = 1.55e-05 (Fisher's exact test), Q value = 0.021
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 30(11Q25) MUTATED | 139 | 105 | 237 | 131 |
DEL PEAK 30(11Q25) WILD-TYPE | 573 | 393 | 644 | 292 |
Cluster Labels | DEL PEAK 31(12P13.1) MUTATED | DEL PEAK 31(12P13.1) WILD-TYPE |
---|---|---|
Number of samples | 597 | 3966 |
P value = 1.45e-20 (Chi-square test), Q value = 2.3e-17
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 31(12P13.1) MUTATED | 16 | 72 | 150 | 45 | 35 | 30 | 6 | 120 | 0 | 90 | 1 | 29 |
DEL PEAK 31(12P13.1) WILD-TYPE | 109 | 472 | 696 | 367 | 412 | 289 | 487 | 542 | 2 | 458 | 1 | 130 |
P value = 9.28e-08 (Fisher's exact test), Q value = 0.00014
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 31(12P13.1) MUTATED | 435 | 162 |
DEL PEAK 31(12P13.1) WILD-TYPE | 2446 | 1520 |
P value = 1.21e-35 (Chi-square test), Q value = 2e-32
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 31(12P13.1) MUTATED | 45 | 0 | 13 | 30 | 6 | 1 | 24 | 57 | 1 | 0 | 6 | 1 | 1 | 0 | 5 | 0 | 0 | 0 | 1 | 21 | 2 | 2 | 28 | 1 | 91 | 20 | 0 | 3 |
DEL PEAK 31(12P13.1) WILD-TYPE | 311 | 54 | 337 | 289 | 487 | 9 | 51 | 148 | 6 | 3 | 9 | 1 | 2 | 2 | 8 | 1 | 1 | 1 | 1 | 294 | 16 | 5 | 115 | 12 | 461 | 59 | 1 | 17 |
P value = 3.65e-06 (Chi-square test), Q value = 0.0051
nPatients | M0 | M1 | M1A | M1B | MX |
---|---|---|---|---|---|
ALL | 1424 | 168 | 9 | 3 | 165 |
DEL PEAK 31(12P13.1) MUTATED | 144 | 22 | 0 | 0 | 40 |
DEL PEAK 31(12P13.1) WILD-TYPE | 1280 | 146 | 9 | 3 | 125 |
Cluster Labels | DEL PEAK 32(12Q23.1) MUTATED | DEL PEAK 32(12Q23.1) WILD-TYPE |
---|---|---|
Number of samples | 692 | 3871 |
P value = 5e-53 (Chi-square test), Q value = 8.4e-50
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 32(12Q23.1) MUTATED | 18 | 61 | 146 | 48 | 34 | 36 | 6 | 130 | 1 | 187 | 0 | 24 |
DEL PEAK 32(12Q23.1) WILD-TYPE | 107 | 483 | 700 | 364 | 413 | 283 | 487 | 532 | 1 | 361 | 2 | 135 |
P value = 5.49e-09 (Fisher's exact test), Q value = 8.1e-06
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 32(12Q23.1) MUTATED | 504 | 188 |
DEL PEAK 32(12Q23.1) WILD-TYPE | 2377 | 1494 |
P value = 2.57e-59 (Chi-square test), Q value = 4.3e-56
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 32(12Q23.1) MUTATED | 44 | 3 | 10 | 36 | 6 | 0 | 16 | 47 | 2 | 0 | 9 | 1 | 0 | 0 | 8 | 0 | 0 | 0 | 1 | 44 | 1 | 2 | 23 | 1 | 188 | 23 | 0 | 3 |
DEL PEAK 32(12Q23.1) WILD-TYPE | 312 | 51 | 340 | 283 | 487 | 10 | 59 | 158 | 5 | 3 | 6 | 1 | 3 | 2 | 5 | 1 | 1 | 1 | 1 | 271 | 17 | 5 | 120 | 12 | 364 | 56 | 1 | 17 |
P value = 1.75e-05 (Fisher's exact test), Q value = 0.024
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 32(12Q23.1) MUTATED | 33 | 105 | 84 | 20 |
DEL PEAK 32(12Q23.1) WILD-TYPE | 433 | 527 | 610 | 189 |
P value = 3.07e-05 (Chi-square test), Q value = 0.042
nPatients | M0 | M1 | M1A | M1B | MX |
---|---|---|---|---|---|
ALL | 1424 | 168 | 9 | 3 | 165 |
DEL PEAK 32(12Q23.1) MUTATED | 154 | 15 | 1 | 1 | 39 |
DEL PEAK 32(12Q23.1) WILD-TYPE | 1270 | 153 | 8 | 2 | 126 |
P value = 1.69e-05 (Fisher's exact test), Q value = 0.023
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 32(12Q23.1) MUTATED | 92 | 69 | 190 | 74 |
DEL PEAK 32(12Q23.1) WILD-TYPE | 620 | 429 | 691 | 349 |
Cluster Labels | DEL PEAK 33(12Q24.33) MUTATED | DEL PEAK 33(12Q24.33) WILD-TYPE |
---|---|---|
Number of samples | 757 | 3806 |
P value = 9.81e-60 (Chi-square test), Q value = 1.7e-56
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 33(12Q24.33) MUTATED | 23 | 68 | 149 | 45 | 44 | 42 | 8 | 144 | 2 | 205 | 0 | 26 |
DEL PEAK 33(12Q24.33) WILD-TYPE | 102 | 476 | 697 | 367 | 403 | 277 | 485 | 518 | 0 | 343 | 2 | 133 |
P value = 2.37e-08 (Fisher's exact test), Q value = 3.5e-05
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 33(12Q24.33) MUTATED | 545 | 212 |
DEL PEAK 33(12Q24.33) WILD-TYPE | 2336 | 1470 |
P value = 9.68e-64 (Chi-square test), Q value = 1.6e-60
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 33(12Q24.33) MUTATED | 42 | 2 | 14 | 42 | 8 | 2 | 16 | 53 | 4 | 0 | 7 | 0 | 1 | 0 | 7 | 0 | 0 | 0 | 1 | 51 | 1 | 2 | 25 | 1 | 207 | 29 | 0 | 3 |
DEL PEAK 33(12Q24.33) WILD-TYPE | 314 | 52 | 336 | 277 | 485 | 8 | 59 | 152 | 3 | 3 | 8 | 2 | 2 | 2 | 6 | 1 | 1 | 1 | 1 | 264 | 17 | 5 | 118 | 12 | 345 | 50 | 1 | 17 |
P value = 1.21e-06 (Fisher's exact test), Q value = 0.0017
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 33(12Q24.33) MUTATED | 36 | 117 | 79 | 30 |
DEL PEAK 33(12Q24.33) WILD-TYPE | 430 | 515 | 615 | 179 |
P value = 3.32e-07 (Fisher's exact test), Q value = 0.00048
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 33(12Q24.33) MUTATED | 102 | 67 | 209 | 83 |
DEL PEAK 33(12Q24.33) WILD-TYPE | 610 | 431 | 672 | 340 |
Cluster Labels | DEL PEAK 34(13Q11) MUTATED | DEL PEAK 34(13Q11) WILD-TYPE |
---|---|---|
Number of samples | 1547 | 3016 |
P value = 1.15e-154 (Chi-square test), Q value = 2e-151
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 34(13Q11) MUTATED | 29 | 177 | 339 | 10 | 67 | 131 | 73 | 401 | 1 | 308 | 2 | 9 |
DEL PEAK 34(13Q11) WILD-TYPE | 96 | 367 | 507 | 402 | 380 | 188 | 420 | 261 | 1 | 240 | 0 | 150 |
P value = 3.77e-153 (Chi-square test), Q value = 6.7e-150
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 34(13Q11) MUTATED | 8 | 2 | 32 | 131 | 73 | 6 | 41 | 117 | 4 | 0 | 11 | 2 | 0 | 0 | 5 | 1 | 0 | 1 | 2 | 210 | 3 | 1 | 5 | 4 | 311 | 32 | 0 | 9 |
DEL PEAK 34(13Q11) WILD-TYPE | 348 | 52 | 318 | 188 | 420 | 4 | 34 | 88 | 3 | 3 | 4 | 0 | 3 | 2 | 8 | 0 | 1 | 0 | 0 | 105 | 15 | 6 | 138 | 9 | 241 | 47 | 1 | 11 |
P value = 2.22e-29 (Fisher's exact test), Q value = 3.6e-26
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 34(13Q11) MUTATED | 131 | 281 | 113 | 81 |
DEL PEAK 34(13Q11) WILD-TYPE | 335 | 351 | 581 | 128 |
P value = 5.38e-06 (Chi-square test), Q value = 0.0075
nPatients | M0 | M1 | M1A | M1B | MX |
---|---|---|---|---|---|
ALL | 1424 | 168 | 9 | 3 | 165 |
DEL PEAK 34(13Q11) MUTATED | 404 | 33 | 0 | 1 | 73 |
DEL PEAK 34(13Q11) WILD-TYPE | 1020 | 135 | 9 | 2 | 92 |
P value = 2.6e-07 (Fisher's exact test), Q value = 0.00038
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 34(13Q11) MUTATED | 252 | 132 | 368 | 160 |
DEL PEAK 34(13Q11) WILD-TYPE | 460 | 366 | 513 | 263 |
P value = 6.36e-09 (Chi-square test), Q value = 9.4e-06
nPatients | 1 | 2 | 3 | 4 | 5 | CURRENT REFORMED SMOKER FOR < OR = 15 YEARS | CURRENT REFORMED SMOKER FOR > 15 YEARS | CURRENT SMOKER | LIFELONG NON-SMOKER |
---|---|---|---|---|---|---|---|---|---|
ALL | 28 | 23 | 37 | 29 | 2 | 355 | 217 | 250 | 128 |
DEL PEAK 34(13Q11) MUTATED | 6 | 4 | 9 | 7 | 1 | 213 | 105 | 139 | 60 |
DEL PEAK 34(13Q11) WILD-TYPE | 22 | 19 | 28 | 22 | 1 | 142 | 112 | 111 | 68 |
Cluster Labels | DEL PEAK 35(13Q14.2) MUTATED | DEL PEAK 35(13Q14.2) WILD-TYPE |
---|---|---|
Number of samples | 1724 | 2839 |
P value = 3.13e-06 (logrank test), Q value = 0.0044
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 4296 | 1401 | 0.0 - 224.0 (14.9) |
DEL PEAK 35(13Q14.2) MUTATED | 1648 | 632 | 0.0 - 211.5 (15.4) |
DEL PEAK 35(13Q14.2) WILD-TYPE | 2648 | 769 | 0.0 - 224.0 (14.3) |
P value = 2.43e-161 (Chi-square test), Q value = 4.3e-158
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 35(13Q14.2) MUTATED | 48 | 230 | 391 | 15 | 72 | 135 | 77 | 403 | 1 | 339 | 2 | 10 |
DEL PEAK 35(13Q14.2) WILD-TYPE | 77 | 314 | 455 | 397 | 375 | 184 | 416 | 259 | 1 | 209 | 0 | 149 |
P value = 2.68e-158 (Chi-square test), Q value = 4.8e-155
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 35(13Q14.2) MUTATED | 12 | 2 | 42 | 135 | 77 | 7 | 39 | 112 | 3 | 0 | 10 | 2 | 1 | 0 | 4 | 1 | 0 | 1 | 1 | 221 | 4 | 1 | 6 | 4 | 342 | 26 | 0 | 11 |
DEL PEAK 35(13Q14.2) WILD-TYPE | 344 | 52 | 308 | 184 | 416 | 3 | 36 | 93 | 4 | 3 | 5 | 0 | 2 | 2 | 9 | 0 | 1 | 0 | 1 | 94 | 14 | 6 | 137 | 9 | 210 | 53 | 1 | 9 |
P value = 1.25e-28 (Fisher's exact test), Q value = 2e-25
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 35(13Q14.2) MUTATED | 148 | 282 | 113 | 75 |
DEL PEAK 35(13Q14.2) WILD-TYPE | 318 | 350 | 581 | 134 |
P value = 1.36e-05 (Chi-square test), Q value = 0.019
nPatients | M0 | M1 | M1A | M1B | MX |
---|---|---|---|---|---|
ALL | 1424 | 168 | 9 | 3 | 165 |
DEL PEAK 35(13Q14.2) MUTATED | 418 | 33 | 1 | 1 | 74 |
DEL PEAK 35(13Q14.2) WILD-TYPE | 1006 | 135 | 8 | 2 | 91 |
P value = 4.05e-08 (Fisher's exact test), Q value = 5.9e-05
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 35(13Q14.2) MUTATED | 265 | 140 | 392 | 157 |
DEL PEAK 35(13Q14.2) WILD-TYPE | 447 | 358 | 489 | 266 |
P value = 0.000134 (Chi-square test), Q value = 0.17
nPatients | 1 | 2 | 3 | 4 | 5 | CURRENT REFORMED SMOKER FOR < OR = 15 YEARS | CURRENT REFORMED SMOKER FOR > 15 YEARS | CURRENT SMOKER | LIFELONG NON-SMOKER |
---|---|---|---|---|---|---|---|---|---|
ALL | 28 | 23 | 37 | 29 | 2 | 355 | 217 | 250 | 128 |
DEL PEAK 35(13Q14.2) MUTATED | 7 | 7 | 14 | 15 | 1 | 217 | 101 | 139 | 64 |
DEL PEAK 35(13Q14.2) WILD-TYPE | 21 | 16 | 23 | 14 | 1 | 138 | 116 | 111 | 64 |
Cluster Labels | DEL PEAK 36(14Q24.1) MUTATED | DEL PEAK 36(14Q24.1) WILD-TYPE |
---|---|---|
Number of samples | 1456 | 3107 |
P value = 3.5e-50 (Chi-square test), Q value = 5.8e-47
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 36(14Q24.1) MUTATED | 36 | 168 | 263 | 125 | 53 | 39 | 218 | 211 | 1 | 273 | 1 | 66 |
DEL PEAK 36(14Q24.1) WILD-TYPE | 89 | 376 | 583 | 287 | 394 | 280 | 275 | 451 | 1 | 275 | 1 | 93 |
P value = 3.47e-53 (Chi-square test), Q value = 5.8e-50
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 36(14Q24.1) MUTATED | 119 | 5 | 21 | 39 | 218 | 5 | 19 | 54 | 3 | 0 | 4 | 1 | 0 | 1 | 3 | 0 | 0 | 1 | 0 | 117 | 4 | 3 | 64 | 1 | 275 | 28 | 0 | 5 |
DEL PEAK 36(14Q24.1) WILD-TYPE | 237 | 49 | 329 | 280 | 275 | 5 | 56 | 151 | 4 | 3 | 11 | 1 | 3 | 1 | 10 | 1 | 1 | 0 | 2 | 198 | 14 | 4 | 79 | 12 | 277 | 51 | 1 | 15 |
P value = 3.49e-05 (Fisher's exact test), Q value = 0.047
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 36(14Q24.1) MUTATED | 151 | 198 | 259 | 42 |
DEL PEAK 36(14Q24.1) WILD-TYPE | 315 | 434 | 435 | 167 |
P value = 8.6e-05 (Fisher's exact test), Q value = 0.11
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 1067 | 353 | 282 | 11 |
DEL PEAK 36(14Q24.1) MUTATED | 335 | 135 | 61 | 4 |
DEL PEAK 36(14Q24.1) WILD-TYPE | 732 | 218 | 221 | 7 |
P value = 9.79e-09 (Fisher's exact test), Q value = 1.5e-05
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 36(14Q24.1) MUTATED | 234 | 154 | 392 | 131 |
DEL PEAK 36(14Q24.1) WILD-TYPE | 478 | 344 | 489 | 292 |
Cluster Labels | DEL PEAK 37(15Q11.2) MUTATED | DEL PEAK 37(15Q11.2) WILD-TYPE |
---|---|---|
Number of samples | 1456 | 3107 |
P value = 6.2e-74 (Chi-square test), Q value = 1.1e-70
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 37(15Q11.2) MUTATED | 44 | 116 | 292 | 159 | 89 | 68 | 39 | 288 | 2 | 283 | 2 | 71 |
DEL PEAK 37(15Q11.2) WILD-TYPE | 81 | 428 | 554 | 253 | 358 | 251 | 454 | 374 | 0 | 265 | 0 | 88 |
P value = 8.72e-06 (Fisher's exact test), Q value = 0.012
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 37(15Q11.2) MUTATED | 987 | 469 |
DEL PEAK 37(15Q11.2) WILD-TYPE | 1894 | 1213 |
P value = 1.4e-81 (Chi-square test), Q value = 2.4e-78
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 37(15Q11.2) MUTATED | 145 | 13 | 38 | 68 | 39 | 4 | 32 | 122 | 2 | 0 | 8 | 1 | 3 | 0 | 9 | 0 | 0 | 1 | 1 | 104 | 5 | 1 | 64 | 6 | 287 | 46 | 0 | 6 |
DEL PEAK 37(15Q11.2) WILD-TYPE | 211 | 41 | 312 | 251 | 454 | 6 | 43 | 83 | 5 | 3 | 7 | 1 | 0 | 2 | 4 | 1 | 1 | 0 | 1 | 211 | 13 | 6 | 79 | 7 | 265 | 33 | 1 | 14 |
P value = 2.02e-07 (Fisher's exact test), Q value = 0.00029
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 37(15Q11.2) MUTATED | 98 | 231 | 230 | 60 |
DEL PEAK 37(15Q11.2) WILD-TYPE | 368 | 401 | 464 | 149 |
P value = 1.56e-06 (Fisher's exact test), Q value = 0.0022
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 1067 | 353 | 282 | 11 |
DEL PEAK 37(15Q11.2) MUTATED | 315 | 150 | 118 | 5 |
DEL PEAK 37(15Q11.2) WILD-TYPE | 752 | 203 | 164 | 6 |
P value = 4.36e-09 (Fisher's exact test), Q value = 6.5e-06
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 37(15Q11.2) MUTATED | 197 | 175 | 379 | 141 |
DEL PEAK 37(15Q11.2) WILD-TYPE | 515 | 323 | 502 | 282 |
P value = 2.48e-06 (Fisher's exact test), Q value = 0.0035
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 37(15Q11.2) MUTATED | 207 | 1249 |
DEL PEAK 37(15Q11.2) WILD-TYPE | 619 | 2488 |
Cluster Labels | DEL PEAK 38(15Q15.1) MUTATED | DEL PEAK 38(15Q15.1) WILD-TYPE |
---|---|---|
Number of samples | 1579 | 2984 |
P value = 7.53e-92 (Chi-square test), Q value = 1.3e-88
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 38(15Q15.1) MUTATED | 45 | 140 | 310 | 149 | 103 | 74 | 38 | 296 | 2 | 343 | 2 | 74 |
DEL PEAK 38(15Q15.1) WILD-TYPE | 80 | 404 | 536 | 263 | 344 | 245 | 455 | 366 | 0 | 205 | 0 | 85 |
P value = 5.85e-08 (Fisher's exact test), Q value = 8.6e-05
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 38(15Q15.1) MUTATED | 1081 | 498 |
DEL PEAK 38(15Q15.1) WILD-TYPE | 1800 | 1184 |
P value = 4.97e-103 (Chi-square test), Q value = 8.6e-100
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 38(15Q15.1) MUTATED | 136 | 12 | 46 | 74 | 38 | 4 | 32 | 126 | 2 | 0 | 8 | 1 | 3 | 0 | 9 | 0 | 0 | 1 | 1 | 108 | 7 | 1 | 67 | 6 | 347 | 50 | 0 | 6 |
DEL PEAK 38(15Q15.1) WILD-TYPE | 220 | 42 | 304 | 245 | 455 | 6 | 43 | 79 | 5 | 3 | 7 | 1 | 0 | 2 | 4 | 1 | 1 | 0 | 1 | 207 | 11 | 6 | 76 | 7 | 205 | 29 | 1 | 14 |
P value = 3.86e-08 (Fisher's exact test), Q value = 5.7e-05
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 38(15Q15.1) MUTATED | 97 | 237 | 227 | 62 |
DEL PEAK 38(15Q15.1) WILD-TYPE | 369 | 395 | 467 | 147 |
P value = 1.3e-06 (Fisher's exact test), Q value = 0.0019
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 1067 | 353 | 282 | 11 |
DEL PEAK 38(15Q15.1) MUTATED | 316 | 152 | 117 | 5 |
DEL PEAK 38(15Q15.1) WILD-TYPE | 751 | 201 | 165 | 6 |
P value = 1.55e-15 (Fisher's exact test), Q value = 2.4e-12
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 38(15Q15.1) MUTATED | 202 | 179 | 427 | 146 |
DEL PEAK 38(15Q15.1) WILD-TYPE | 510 | 319 | 454 | 277 |
P value = 5.22e-05 (Fisher's exact test), Q value = 0.07
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 38(15Q15.1) MUTATED | 236 | 1343 |
DEL PEAK 38(15Q15.1) WILD-TYPE | 590 | 2394 |
Cluster Labels | DEL PEAK 39(16P13.3) MUTATED | DEL PEAK 39(16P13.3) WILD-TYPE |
---|---|---|
Number of samples | 744 | 3819 |
P value = 1.85e-05 (logrank test), Q value = 0.025
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 4296 | 1401 | 0.0 - 224.0 (14.9) |
DEL PEAK 39(16P13.3) MUTATED | 708 | 290 | 0.0 - 211.5 (16.0) |
DEL PEAK 39(16P13.3) WILD-TYPE | 3588 | 1111 | 0.0 - 224.0 (14.7) |
P value = 8.46e-131 (Chi-square test), Q value = 1.5e-127
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 39(16P13.3) MUTATED | 36 | 66 | 48 | 45 | 55 | 37 | 12 | 165 | 2 | 264 | 1 | 13 |
DEL PEAK 39(16P13.3) WILD-TYPE | 89 | 478 | 798 | 367 | 392 | 282 | 481 | 497 | 0 | 284 | 1 | 146 |
P value = 2.73e-96 (Chi-square test), Q value = 4.7e-93
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 39(16P13.3) MUTATED | 39 | 6 | 20 | 37 | 12 | 2 | 15 | 38 | 4 | 0 | 2 | 0 | 0 | 0 | 2 | 1 | 0 | 0 | 1 | 99 | 4 | 1 | 10 | 2 | 267 | 31 | 0 | 3 |
DEL PEAK 39(16P13.3) WILD-TYPE | 317 | 48 | 330 | 282 | 481 | 8 | 60 | 167 | 3 | 3 | 13 | 2 | 3 | 2 | 11 | 0 | 1 | 1 | 1 | 216 | 14 | 6 | 133 | 11 | 285 | 48 | 1 | 17 |
P value = 2.9e-13 (Fisher's exact test), Q value = 4.5e-10
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 39(16P13.3) MUTATED | 107 | 82 | 262 | 79 |
DEL PEAK 39(16P13.3) WILD-TYPE | 605 | 416 | 619 | 344 |
P value = 2.53e-09 (Fisher's exact test), Q value = 3.8e-06
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 39(16P13.3) MUTATED | 80 | 664 |
DEL PEAK 39(16P13.3) WILD-TYPE | 746 | 3073 |
P value = 8.49e-09 (Chi-square test), Q value = 1.3e-05
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE TIS | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 72 | 62 | 7 | 43 | 287 | 186 | 42 | 124 | 25 | 41 | 59 | 1 | 16 |
DEL PEAK 39(16P13.3) MUTATED | 5 | 2 | 1 | 7 | 19 | 10 | 13 | 5 | 1 | 3 | 15 | 0 | 2 |
DEL PEAK 39(16P13.3) WILD-TYPE | 67 | 60 | 6 | 36 | 268 | 176 | 29 | 119 | 24 | 38 | 44 | 1 | 14 |
Cluster Labels | DEL PEAK 40(16Q23.1) MUTATED | DEL PEAK 40(16Q23.1) WILD-TYPE |
---|---|---|
Number of samples | 1614 | 2949 |
P value = 1.03e-249 (Chi-square test), Q value = 1.9e-246
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 40(16Q23.1) MUTATED | 34 | 96 | 537 | 49 | 127 | 60 | 19 | 240 | 1 | 426 | 2 | 23 |
DEL PEAK 40(16Q23.1) WILD-TYPE | 91 | 448 | 309 | 363 | 320 | 259 | 474 | 422 | 1 | 122 | 0 | 136 |
P value = 1.35e-71 (Fisher's exact test), Q value = 2.3e-68
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 40(16Q23.1) MUTATED | 1291 | 323 |
DEL PEAK 40(16Q23.1) WILD-TYPE | 1590 | 1359 |
P value = 2e-189 (Chi-square test), Q value = 3.6e-186
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 40(16Q23.1) MUTATED | 40 | 9 | 59 | 60 | 19 | 4 | 25 | 67 | 3 | 0 | 6 | 2 | 1 | 0 | 5 | 0 | 0 | 0 | 1 | 123 | 6 | 3 | 20 | 2 | 429 | 62 | 0 | 6 |
DEL PEAK 40(16Q23.1) WILD-TYPE | 316 | 45 | 291 | 259 | 474 | 6 | 50 | 138 | 4 | 3 | 9 | 0 | 2 | 2 | 8 | 1 | 1 | 1 | 1 | 192 | 12 | 4 | 123 | 11 | 123 | 17 | 1 | 14 |
P value = 7.26e-11 (Fisher's exact test), Q value = 1.1e-07
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 40(16Q23.1) MUTATED | 67 | 170 | 89 | 46 |
DEL PEAK 40(16Q23.1) WILD-TYPE | 399 | 462 | 605 | 163 |
P value = 4.29e-33 (Fisher's exact test), Q value = 7e-30
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 40(16Q23.1) MUTATED | 149 | 111 | 413 | 117 |
DEL PEAK 40(16Q23.1) WILD-TYPE | 563 | 387 | 468 | 306 |
P value = 4.83e-05 (Fisher's exact test), Q value = 0.065
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 40(16Q23.1) MUTATED | 242 | 1372 |
DEL PEAK 40(16Q23.1) WILD-TYPE | 584 | 2365 |
P value = 1.18e-09 (Chi-square test), Q value = 1.8e-06
nPatients | STAGE I | STAGE IA | STAGE IB | STAGE II | STAGE IIA | STAGE IIB | STAGE III | STAGE IIIA | STAGE IIIB | STAGE IIIC | STAGE IV | STAGE TIS | STAGE X |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 72 | 62 | 7 | 43 | 287 | 186 | 42 | 124 | 25 | 41 | 59 | 1 | 16 |
DEL PEAK 40(16Q23.1) MUTATED | 55 | 40 | 4 | 16 | 186 | 112 | 9 | 74 | 14 | 28 | 20 | 0 | 12 |
DEL PEAK 40(16Q23.1) WILD-TYPE | 17 | 22 | 3 | 27 | 101 | 74 | 33 | 50 | 11 | 13 | 39 | 1 | 4 |
Cluster Labels | DEL PEAK 41(17P12) MUTATED | DEL PEAK 41(17P12) WILD-TYPE |
---|---|---|
Number of samples | 2062 | 2501 |
P value = 1.18e-243 (Chi-square test), Q value = 2.1e-240
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 41(17P12) MUTATED | 64 | 68 | 513 | 228 | 97 | 75 | 50 | 387 | 2 | 463 | 1 | 110 |
DEL PEAK 41(17P12) WILD-TYPE | 61 | 476 | 333 | 184 | 350 | 244 | 443 | 275 | 0 | 85 | 1 | 49 |
P value = 3e-26 (Fisher's exact test), Q value = 4.8e-23
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 41(17P12) MUTATED | 1473 | 589 |
DEL PEAK 41(17P12) WILD-TYPE | 1408 | 1093 |
P value = 2.4e-05 (t-test), Q value = 0.033
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 640 | 73.6 (23.9) |
DEL PEAK 41(17P12) MUTATED | 198 | 66.6 (30.5) |
DEL PEAK 41(17P12) WILD-TYPE | 442 | 76.7 (19.6) |
P value = 1.94e-191 (Chi-square test), Q value = 3.5e-188
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 41(17P12) MUTATED | 213 | 14 | 36 | 75 | 50 | 6 | 33 | 126 | 5 | 1 | 8 | 2 | 3 | 0 | 5 | 0 | 0 | 1 | 2 | 193 | 9 | 2 | 102 | 6 | 466 | 52 | 0 | 2 |
DEL PEAK 41(17P12) WILD-TYPE | 143 | 40 | 314 | 244 | 443 | 4 | 42 | 79 | 2 | 2 | 7 | 0 | 0 | 2 | 8 | 1 | 1 | 0 | 0 | 122 | 9 | 5 | 41 | 7 | 86 | 27 | 1 | 18 |
P value = 2.66e-13 (Fisher's exact test), Q value = 4.1e-10
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 41(17P12) MUTATED | 133 | 317 | 318 | 73 |
DEL PEAK 41(17P12) WILD-TYPE | 333 | 315 | 376 | 136 |
P value = 2.29e-07 (Fisher's exact test), Q value = 0.00033
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 1067 | 353 | 282 | 11 |
DEL PEAK 41(17P12) MUTATED | 439 | 202 | 148 | 5 |
DEL PEAK 41(17P12) WILD-TYPE | 628 | 151 | 134 | 6 |
P value = 9.14e-30 (Fisher's exact test), Q value = 1.5e-26
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 41(17P12) MUTATED | 274 | 239 | 585 | 190 |
DEL PEAK 41(17P12) WILD-TYPE | 438 | 259 | 296 | 233 |
P value = 3.15e-28 (Fisher's exact test), Q value = 5.1e-25
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 41(17P12) MUTATED | 233 | 1829 |
DEL PEAK 41(17P12) WILD-TYPE | 593 | 1908 |
Cluster Labels | DEL PEAK 42(17Q11.2) MUTATED | DEL PEAK 42(17Q11.2) WILD-TYPE |
---|---|---|
Number of samples | 1131 | 3432 |
P value = 1.08e-05 (t-test), Q value = 0.015
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 4507 | 61.9 (12.6) |
DEL PEAK 42(17Q11.2) MUTATED | 1117 | 60.4 (12.2) |
DEL PEAK 42(17Q11.2) WILD-TYPE | 3390 | 62.3 (12.7) |
P value = 4.51e-260 (Chi-square test), Q value = 8.2e-257
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 42(17Q11.2) MUTATED | 12 | 67 | 264 | 47 | 78 | 30 | 33 | 126 | 2 | 448 | 0 | 21 |
DEL PEAK 42(17Q11.2) WILD-TYPE | 113 | 477 | 582 | 365 | 369 | 289 | 460 | 536 | 0 | 100 | 2 | 138 |
P value = 2.56e-50 (Fisher's exact test), Q value = 4.3e-47
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 42(17Q11.2) MUTATED | 917 | 214 |
DEL PEAK 42(17Q11.2) WILD-TYPE | 1964 | 1468 |
P value = 2.51e-232 (Chi-square test), Q value = 4.5e-229
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 42(17Q11.2) MUTATED | 41 | 6 | 38 | 30 | 33 | 0 | 9 | 33 | 1 | 0 | 2 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 77 | 5 | 1 | 20 | 1 | 450 | 35 | 0 | 2 |
DEL PEAK 42(17Q11.2) WILD-TYPE | 315 | 48 | 312 | 289 | 460 | 10 | 66 | 172 | 6 | 3 | 13 | 2 | 2 | 2 | 12 | 1 | 1 | 0 | 2 | 238 | 13 | 6 | 123 | 12 | 102 | 44 | 1 | 18 |
P value = 1.47e-59 (Fisher's exact test), Q value = 2.5e-56
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 42(17Q11.2) MUTATED | 104 | 73 | 419 | 101 |
DEL PEAK 42(17Q11.2) WILD-TYPE | 608 | 425 | 462 | 322 |
P value = 1.65e-09 (Fisher's exact test), Q value = 2.5e-06
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 42(17Q11.2) MUTATED | 139 | 992 |
DEL PEAK 42(17Q11.2) WILD-TYPE | 687 | 2745 |
Cluster Labels | DEL PEAK 43(18Q21.2) MUTATED | DEL PEAK 43(18Q21.2) WILD-TYPE |
---|---|---|
Number of samples | 1777 | 2786 |
P value = 2.01e-06 (t-test), Q value = 0.0028
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 4507 | 61.9 (12.6) |
DEL PEAK 43(18Q21.2) MUTATED | 1749 | 63.0 (12.1) |
DEL PEAK 43(18Q21.2) WILD-TYPE | 2758 | 61.1 (12.9) |
P value = 7.33e-159 (Chi-square test), Q value = 1.3e-155
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 43(18Q21.2) MUTATED | 59 | 67 | 278 | 260 | 67 | 168 | 97 | 306 | 1 | 331 | 0 | 140 |
DEL PEAK 43(18Q21.2) WILD-TYPE | 66 | 477 | 568 | 152 | 380 | 151 | 396 | 356 | 1 | 217 | 2 | 19 |
P value = 9.15e-112 (Chi-square test), Q value = 1.6e-108
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 43(18Q21.2) MUTATED | 245 | 14 | 29 | 168 | 97 | 4 | 38 | 110 | 1 | 1 | 7 | 2 | 2 | 1 | 4 | 1 | 0 | 0 | 1 | 130 | 5 | 4 | 126 | 12 | 332 | 33 | 0 | 5 |
DEL PEAK 43(18Q21.2) WILD-TYPE | 111 | 40 | 321 | 151 | 396 | 6 | 37 | 95 | 6 | 2 | 8 | 0 | 1 | 1 | 9 | 0 | 1 | 1 | 1 | 185 | 13 | 3 | 17 | 1 | 220 | 46 | 1 | 15 |
P value = 3.15e-24 (Fisher's exact test), Q value = 5.1e-21
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 43(18Q21.2) MUTATED | 128 | 310 | 394 | 122 |
DEL PEAK 43(18Q21.2) WILD-TYPE | 338 | 322 | 300 | 87 |
P value = 2.33e-10 (Fisher's exact test), Q value = 3.5e-07
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 1067 | 353 | 282 | 11 |
DEL PEAK 43(18Q21.2) MUTATED | 485 | 216 | 180 | 5 |
DEL PEAK 43(18Q21.2) WILD-TYPE | 582 | 137 | 102 | 6 |
P value = 1.36e-06 (Chi-square test), Q value = 0.0019
nPatients | M0 | M1 | M1A | M1B | MX |
---|---|---|---|---|---|
ALL | 1424 | 168 | 9 | 3 | 165 |
DEL PEAK 43(18Q21.2) MUTATED | 618 | 100 | 8 | 1 | 96 |
DEL PEAK 43(18Q21.2) WILD-TYPE | 806 | 68 | 1 | 2 | 69 |
P value = 4.15e-17 (Fisher's exact test), Q value = 6.5e-14
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 43(18Q21.2) MUTATED | 260 | 266 | 479 | 255 |
DEL PEAK 43(18Q21.2) WILD-TYPE | 452 | 232 | 402 | 168 |
P value = 3.94e-26 (Fisher's exact test), Q value = 6.4e-23
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 43(18Q21.2) MUTATED | 191 | 1586 |
DEL PEAK 43(18Q21.2) WILD-TYPE | 635 | 2151 |
Cluster Labels | DEL PEAK 44(18Q23) MUTATED | DEL PEAK 44(18Q23) WILD-TYPE |
---|---|---|
Number of samples | 1834 | 2729 |
P value = 3.55e-162 (Chi-square test), Q value = 6.3e-159
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 44(18Q23) MUTATED | 55 | 73 | 278 | 258 | 73 | 179 | 101 | 317 | 1 | 360 | 0 | 136 |
DEL PEAK 44(18Q23) WILD-TYPE | 70 | 471 | 568 | 154 | 374 | 140 | 392 | 345 | 1 | 188 | 2 | 23 |
P value = 8.86e-116 (Chi-square test), Q value = 1.6e-112
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 44(18Q23) MUTATED | 244 | 13 | 30 | 179 | 101 | 5 | 38 | 104 | 1 | 1 | 7 | 2 | 2 | 1 | 3 | 1 | 0 | 0 | 0 | 148 | 5 | 4 | 124 | 11 | 361 | 38 | 0 | 5 |
DEL PEAK 44(18Q23) WILD-TYPE | 112 | 41 | 320 | 140 | 392 | 5 | 37 | 101 | 6 | 2 | 8 | 0 | 1 | 1 | 10 | 0 | 1 | 1 | 2 | 167 | 13 | 3 | 19 | 2 | 191 | 41 | 1 | 15 |
P value = 4.49e-23 (Fisher's exact test), Q value = 7.2e-20
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 44(18Q23) MUTATED | 136 | 311 | 399 | 127 |
DEL PEAK 44(18Q23) WILD-TYPE | 330 | 321 | 295 | 82 |
P value = 3.7e-10 (Fisher's exact test), Q value = 5.6e-07
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 1067 | 353 | 282 | 11 |
DEL PEAK 44(18Q23) MUTATED | 495 | 213 | 186 | 6 |
DEL PEAK 44(18Q23) WILD-TYPE | 572 | 140 | 96 | 5 |
P value = 7.29e-05 (Chi-square test), Q value = 0.097
nPatients | M0 | M1 | M1A | M1B | MX |
---|---|---|---|---|---|
ALL | 1424 | 168 | 9 | 3 | 165 |
DEL PEAK 44(18Q23) MUTATED | 635 | 97 | 8 | 1 | 94 |
DEL PEAK 44(18Q23) WILD-TYPE | 789 | 71 | 1 | 2 | 71 |
P value = 1.51e-19 (Fisher's exact test), Q value = 2.4e-16
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 44(18Q23) MUTATED | 266 | 268 | 515 | 258 |
DEL PEAK 44(18Q23) WILD-TYPE | 446 | 230 | 366 | 165 |
P value = 9.54e-25 (Fisher's exact test), Q value = 1.5e-21
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 44(18Q23) MUTATED | 204 | 1630 |
DEL PEAK 44(18Q23) WILD-TYPE | 622 | 2107 |
Cluster Labels | DEL PEAK 45(19P13.3) MUTATED | DEL PEAK 45(19P13.3) WILD-TYPE |
---|---|---|
Number of samples | 1511 | 3052 |
P value = 1.3e-268 (Chi-square test), Q value = 2.4e-265
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 45(19P13.3) MUTATED | 47 | 36 | 293 | 56 | 106 | 107 | 18 | 331 | 2 | 478 | 2 | 34 |
DEL PEAK 45(19P13.3) WILD-TYPE | 78 | 508 | 553 | 356 | 341 | 212 | 475 | 331 | 0 | 70 | 0 | 125 |
P value = 1.38e-24 (Fisher's exact test), Q value = 2.2e-21
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 45(19P13.3) MUTATED | 1109 | 402 |
DEL PEAK 45(19P13.3) WILD-TYPE | 1772 | 1280 |
P value = 4.58e-237 (Chi-square test), Q value = 8.3e-234
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 45(19P13.3) MUTATED | 51 | 4 | 35 | 107 | 18 | 4 | 45 | 109 | 3 | 0 | 8 | 1 | 3 | 1 | 8 | 1 | 0 | 1 | 2 | 143 | 7 | 2 | 31 | 2 | 482 | 64 | 0 | 1 |
DEL PEAK 45(19P13.3) WILD-TYPE | 305 | 50 | 315 | 212 | 475 | 6 | 30 | 96 | 4 | 3 | 7 | 1 | 0 | 1 | 5 | 0 | 1 | 0 | 0 | 172 | 11 | 5 | 112 | 11 | 70 | 15 | 1 | 19 |
P value = 1.31e-17 (Fisher's exact test), Q value = 2.1e-14
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 45(19P13.3) MUTATED | 93 | 243 | 130 | 70 |
DEL PEAK 45(19P13.3) WILD-TYPE | 373 | 389 | 564 | 139 |
P value = 1.11e-05 (Fisher's exact test), Q value = 0.015
nPatients | N0 | N1 | N2 | N3 |
---|---|---|---|---|
ALL | 1067 | 353 | 282 | 11 |
DEL PEAK 45(19P13.3) MUTATED | 275 | 119 | 112 | 5 |
DEL PEAK 45(19P13.3) WILD-TYPE | 792 | 234 | 170 | 6 |
P value = 1.59e-41 (Fisher's exact test), Q value = 2.6e-38
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 45(19P13.3) MUTATED | 193 | 141 | 508 | 167 |
DEL PEAK 45(19P13.3) WILD-TYPE | 519 | 357 | 373 | 256 |
P value = 6.69e-19 (Fisher's exact test), Q value = 1.1e-15
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 45(19P13.3) MUTATED | 168 | 1343 |
DEL PEAK 45(19P13.3) WILD-TYPE | 658 | 2394 |
Cluster Labels | DEL PEAK 46(19Q13.32) MUTATED | DEL PEAK 46(19Q13.32) WILD-TYPE |
---|---|---|
Number of samples | 968 | 3595 |
P value = 1.15e-114 (Chi-square test), Q value = 2e-111
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 46(19Q13.32) MUTATED | 14 | 96 | 174 | 43 | 44 | 61 | 7 | 218 | 1 | 286 | 1 | 22 |
DEL PEAK 46(19Q13.32) WILD-TYPE | 111 | 448 | 672 | 369 | 403 | 258 | 486 | 444 | 1 | 262 | 1 | 137 |
P value = 1.42e-07 (Fisher's exact test), Q value = 0.00021
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 46(19Q13.32) MUTATED | 681 | 287 |
DEL PEAK 46(19Q13.32) WILD-TYPE | 2200 | 1395 |
P value = 3.8e-108 (Chi-square test), Q value = 6.6e-105
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 46(19Q13.32) MUTATED | 37 | 5 | 15 | 61 | 7 | 3 | 32 | 73 | 4 | 0 | 5 | 1 | 1 | 0 | 8 | 1 | 0 | 0 | 2 | 87 | 5 | 1 | 20 | 1 | 288 | 24 | 0 | 5 |
DEL PEAK 46(19Q13.32) WILD-TYPE | 319 | 49 | 335 | 258 | 486 | 7 | 43 | 132 | 3 | 3 | 10 | 1 | 2 | 2 | 5 | 0 | 1 | 1 | 0 | 228 | 13 | 6 | 123 | 12 | 264 | 55 | 1 | 15 |
P value = 7.12e-07 (Fisher's exact test), Q value = 0.001
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 46(19Q13.32) MUTATED | 59 | 151 | 96 | 38 |
DEL PEAK 46(19Q13.32) WILD-TYPE | 407 | 481 | 598 | 171 |
P value = 2.06e-19 (Fisher's exact test), Q value = 3.3e-16
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 46(19Q13.32) MUTATED | 128 | 91 | 318 | 88 |
DEL PEAK 46(19Q13.32) WILD-TYPE | 584 | 407 | 563 | 335 |
Cluster Labels | DEL PEAK 47(19Q13.43) MUTATED | DEL PEAK 47(19Q13.43) WILD-TYPE |
---|---|---|
Number of samples | 884 | 3679 |
P value = 1.25e-103 (Chi-square test), Q value = 2.2e-100
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 47(19Q13.43) MUTATED | 13 | 82 | 144 | 42 | 46 | 63 | 5 | 194 | 1 | 267 | 1 | 25 |
DEL PEAK 47(19Q13.43) WILD-TYPE | 112 | 462 | 702 | 370 | 401 | 256 | 488 | 468 | 1 | 281 | 1 | 134 |
P value = 4.29e-07 (Fisher's exact test), Q value = 0.00062
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 47(19Q13.43) MUTATED | 623 | 261 |
DEL PEAK 47(19Q13.43) WILD-TYPE | 2258 | 1421 |
P value = 1.91e-95 (Chi-square test), Q value = 3.3e-92
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 47(19Q13.43) MUTATED | 36 | 5 | 13 | 63 | 5 | 3 | 29 | 63 | 4 | 0 | 5 | 0 | 2 | 0 | 6 | 1 | 0 | 0 | 1 | 79 | 4 | 1 | 23 | 1 | 269 | 29 | 0 | 6 |
DEL PEAK 47(19Q13.43) WILD-TYPE | 320 | 49 | 337 | 256 | 488 | 7 | 46 | 142 | 3 | 3 | 10 | 2 | 1 | 2 | 7 | 0 | 1 | 1 | 1 | 236 | 14 | 6 | 120 | 12 | 283 | 50 | 1 | 14 |
P value = 2.7e-06 (Fisher's exact test), Q value = 0.0038
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 47(19Q13.43) MUTATED | 50 | 136 | 95 | 41 |
DEL PEAK 47(19Q13.43) WILD-TYPE | 416 | 496 | 599 | 168 |
P value = 8.42e-17 (Fisher's exact test), Q value = 1.3e-13
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 47(19Q13.43) MUTATED | 112 | 90 | 292 | 89 |
DEL PEAK 47(19Q13.43) WILD-TYPE | 600 | 408 | 589 | 334 |
Cluster Labels | DEL PEAK 48(20P12.1) MUTATED | DEL PEAK 48(20P12.1) WILD-TYPE |
---|---|---|
Number of samples | 512 | 4051 |
P value = 6.45e-36 (Chi-square test), Q value = 1.1e-32
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 48(20P12.1) MUTATED | 8 | 18 | 103 | 79 | 25 | 45 | 9 | 110 | 0 | 68 | 0 | 46 |
DEL PEAK 48(20P12.1) WILD-TYPE | 117 | 526 | 743 | 333 | 422 | 274 | 484 | 552 | 2 | 480 | 2 | 113 |
P value = 1.04e-29 (Chi-square test), Q value = 1.7e-26
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 48(20P12.1) MUTATED | 73 | 6 | 12 | 45 | 9 | 2 | 20 | 47 | 0 | 0 | 4 | 2 | 1 | 0 | 2 | 0 | 0 | 0 | 1 | 29 | 2 | 2 | 41 | 5 | 68 | 11 | 0 | 0 |
DEL PEAK 48(20P12.1) WILD-TYPE | 283 | 48 | 338 | 274 | 484 | 8 | 55 | 158 | 7 | 3 | 11 | 0 | 2 | 2 | 11 | 1 | 1 | 1 | 1 | 286 | 16 | 5 | 102 | 8 | 484 | 68 | 1 | 20 |
P value = 2.44e-05 (Fisher's exact test), Q value = 0.033
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 48(20P12.1) MUTATED | 59 | 453 |
DEL PEAK 48(20P12.1) WILD-TYPE | 767 | 3284 |
Cluster Labels | DEL PEAK 49(21Q11.2) MUTATED | DEL PEAK 49(21Q11.2) WILD-TYPE |
---|---|---|
Number of samples | 1107 | 3456 |
P value = 3.01e-68 (Chi-square test), Q value = 5.1e-65
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 49(21Q11.2) MUTATED | 21 | 53 | 172 | 124 | 50 | 105 | 54 | 275 | 2 | 180 | 0 | 68 |
DEL PEAK 49(21Q11.2) WILD-TYPE | 104 | 491 | 674 | 288 | 397 | 214 | 439 | 387 | 0 | 368 | 2 | 91 |
P value = 5.01e-47 (Chi-square test), Q value = 8.3e-44
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 49(21Q11.2) MUTATED | 115 | 8 | 17 | 105 | 54 | 6 | 23 | 74 | 3 | 0 | 5 | 0 | 1 | 0 | 6 | 1 | 0 | 1 | 0 | 152 | 5 | 3 | 63 | 3 | 182 | 28 | 0 | 2 |
DEL PEAK 49(21Q11.2) WILD-TYPE | 241 | 46 | 333 | 214 | 439 | 4 | 52 | 131 | 4 | 3 | 10 | 2 | 2 | 2 | 7 | 0 | 1 | 0 | 2 | 163 | 13 | 4 | 80 | 10 | 370 | 51 | 1 | 18 |
P value = 5.18e-06 (Fisher's exact test), Q value = 0.0073
nPatients | T0+T1 | T2 | T3 | T4 |
---|---|---|---|---|
ALL | 466 | 632 | 694 | 209 |
DEL PEAK 49(21Q11.2) MUTATED | 107 | 231 | 204 | 76 |
DEL PEAK 49(21Q11.2) WILD-TYPE | 359 | 401 | 490 | 133 |
P value = 3.58e-11 (Fisher's exact test), Q value = 5.5e-08
nPatients | NO | YES |
---|---|---|
ALL | 826 | 3737 |
DEL PEAK 49(21Q11.2) MUTATED | 129 | 978 |
DEL PEAK 49(21Q11.2) WILD-TYPE | 697 | 2759 |
P value = 0.000113 (Chi-square test), Q value = 0.15
nPatients | 1 | 2 | 3 | 4 | 5 | CURRENT REFORMED SMOKER FOR < OR = 15 YEARS | CURRENT REFORMED SMOKER FOR > 15 YEARS | CURRENT SMOKER | LIFELONG NON-SMOKER |
---|---|---|---|---|---|---|---|---|---|
ALL | 28 | 23 | 37 | 29 | 2 | 355 | 217 | 250 | 128 |
DEL PEAK 49(21Q11.2) MUTATED | 2 | 2 | 8 | 7 | 0 | 150 | 76 | 99 | 43 |
DEL PEAK 49(21Q11.2) WILD-TYPE | 26 | 21 | 29 | 22 | 2 | 205 | 141 | 151 | 85 |
Cluster Labels | DEL PEAK 50(22Q13.32) MUTATED | DEL PEAK 50(22Q13.32) WILD-TYPE |
---|---|---|
Number of samples | 1768 | 2795 |
P value = 0.000113 (logrank test), Q value = 0.15
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 4296 | 1401 | 0.0 - 224.0 (14.9) |
DEL PEAK 50(22Q13.32) MUTATED | 1652 | 604 | 0.0 - 224.0 (15.1) |
DEL PEAK 50(22Q13.32) WILD-TYPE | 2644 | 797 | 0.0 - 223.4 (14.4) |
P value = 3.08e-173 (Chi-square test), Q value = 5.5e-170
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 50(22Q13.32) MUTATED | 49 | 206 | 378 | 143 | 106 | 63 | 37 | 242 | 2 | 474 | 1 | 63 |
DEL PEAK 50(22Q13.32) WILD-TYPE | 76 | 338 | 468 | 269 | 341 | 256 | 456 | 420 | 0 | 74 | 1 | 96 |
P value = 1.14e-27 (Fisher's exact test), Q value = 1.8e-24
nPatients | FEMALE | MALE |
---|---|---|
ALL | 2881 | 1682 |
DEL PEAK 50(22Q13.32) MUTATED | 1288 | 480 |
DEL PEAK 50(22Q13.32) WILD-TYPE | 1593 | 1202 |
P value = 1.36e-190 (Chi-square test), Q value = 2.4e-187
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 50(22Q13.32) MUTATED | 133 | 10 | 48 | 63 | 37 | 5 | 32 | 106 | 4 | 1 | 10 | 0 | 2 | 0 | 7 | 1 | 0 | 1 | 2 | 70 | 8 | 1 | 59 | 4 | 477 | 50 | 0 | 9 |
DEL PEAK 50(22Q13.32) WILD-TYPE | 223 | 44 | 302 | 256 | 456 | 5 | 43 | 99 | 3 | 2 | 5 | 2 | 1 | 2 | 6 | 0 | 1 | 0 | 0 | 245 | 10 | 6 | 84 | 9 | 75 | 29 | 1 | 11 |
P value = 0.000141 (Chi-square test), Q value = 0.18
nPatients | M0 | M1 | M1A | M1B | MX |
---|---|---|---|---|---|
ALL | 1424 | 168 | 9 | 3 | 165 |
DEL PEAK 50(22Q13.32) MUTATED | 361 | 59 | 2 | 3 | 60 |
DEL PEAK 50(22Q13.32) WILD-TYPE | 1063 | 109 | 7 | 0 | 105 |
P value = 1.3e-43 (Fisher's exact test), Q value = 2.2e-40
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 50(22Q13.32) MUTATED | 179 | 150 | 508 | 161 |
DEL PEAK 50(22Q13.32) WILD-TYPE | 533 | 348 | 373 | 262 |
P value = 8.1e-05 (Fisher's exact test), Q value = 0.11
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 1171 | 69 | 59 | 77 |
DEL PEAK 50(22Q13.32) MUTATED | 377 | 41 | 23 | 29 |
DEL PEAK 50(22Q13.32) WILD-TYPE | 794 | 28 | 36 | 48 |
Cluster Labels | DEL PEAK 51(XP21.1) MUTATED | DEL PEAK 51(XP21.1) WILD-TYPE |
---|---|---|
Number of samples | 1181 | 3382 |
P value = 1.62e-05 (logrank test), Q value = 0.022
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 4296 | 1401 | 0.0 - 224.0 (14.9) |
DEL PEAK 51(XP21.1) MUTATED | 1112 | 439 | 0.0 - 173.8 (17.0) |
DEL PEAK 51(XP21.1) WILD-TYPE | 3184 | 962 | 0.0 - 224.0 (14.1) |
P value = 2.08e-114 (Chi-square test), Q value = 3.6e-111
nPatients | BLADDER | BRAIN | BREAST | COLON | ENDOMETRIAL | HEAD/NECK | KIDNEY | LUNG | OMENTUM | OVARY | PERITONEUM (OVARY) | RECTUM |
---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 125 | 544 | 846 | 412 | 447 | 319 | 493 | 662 | 2 | 548 | 2 | 159 |
DEL PEAK 51(XP21.1) MUTATED | 33 | 121 | 173 | 63 | 62 | 103 | 51 | 193 | 1 | 350 | 1 | 28 |
DEL PEAK 51(XP21.1) WILD-TYPE | 92 | 423 | 673 | 349 | 385 | 216 | 442 | 469 | 1 | 198 | 1 | 131 |
P value = 2.13e-103 (Chi-square test), Q value = 3.7e-100
nPatients | COLON ADENOCARCINOMA | COLON MUCINOUS ADENOCARCINOMA | ENDOMETRIOID ENDOMETRIAL ADENOCARCINOMA | HEAD & NECK SQUAMOUS CELL CARCINOMA | KIDNEY CLEAR CELL RENAL CARCINOMA | LUNG ACINAR ADENOCARCINOMA | LUNG ADENOCARCINOMA MIXED SUBTYPE | LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | LUNG BASALOID SQUAMOUS CELL CARCINOMA | LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS | LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS | LUNG CLEAR CELL ADENOCARCINOMA | LUNG MICROPAPILLARY ADENOCARCINOMA | LUNG MUCINOUS ADENOCARCINOMA | LUNG PAPILLARY ADENOCARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARCINOMA | LUNG PAPILLARY SQUAMOUS CELL CARICNOMA | LUNG SMALL CELL SQUAMOUS CELL CARCINOMA | LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA | LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS) | MIXED SEROUS AND ENDOMETRIOID | MUCINOUS (COLLOID) ADENOCARCINOMA | RECTAL ADENOCARCINOMA | RECTAL MUCINOUS ADENOCARCINOMA | SEROUS CYSTADENOCARCINOMA | SEROUS ENDOMETRIAL ADENOCARCINOMA | TREATED PRIMARY GBM | UNTREATED PRIMARY (DE NOVO) GBM |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ALL | 356 | 54 | 350 | 319 | 493 | 10 | 75 | 205 | 7 | 3 | 15 | 2 | 3 | 2 | 13 | 1 | 1 | 1 | 2 | 315 | 18 | 7 | 143 | 13 | 552 | 79 | 1 | 20 |
DEL PEAK 51(XP21.1) MUTATED | 59 | 4 | 26 | 103 | 51 | 3 | 19 | 58 | 1 | 1 | 2 | 0 | 2 | 1 | 3 | 1 | 0 | 0 | 0 | 100 | 2 | 2 | 23 | 4 | 352 | 34 | 0 | 7 |
DEL PEAK 51(XP21.1) WILD-TYPE | 297 | 50 | 324 | 216 | 442 | 7 | 56 | 147 | 6 | 2 | 13 | 2 | 1 | 1 | 10 | 0 | 1 | 1 | 2 | 215 | 16 | 5 | 120 | 9 | 200 | 45 | 1 | 13 |
P value = 1.74e-18 (Fisher's exact test), Q value = 2.7e-15
nPatients | I | II | III | IV |
---|---|---|---|---|
ALL | 712 | 498 | 881 | 423 |
DEL PEAK 51(XP21.1) MUTATED | 152 | 115 | 359 | 138 |
DEL PEAK 51(XP21.1) WILD-TYPE | 560 | 383 | 522 | 285 |
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Cluster data file = all_lesions.conf_99.cnv.cluster.txt
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Clinical data file = PANCAN12-TP.clin.merged.picked.txt
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Number of patients = 4563
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Number of clustering approaches = 91
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Number of selected clinical features = 21
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Exclude small clusters that include fewer than K patients, K = 3
For survival clinical features, the Kaplan-Meier survival curves of tumors with and without gene mutations were plotted and the statistical significance P values were estimated by logrank test (Bland and Altman 2004) using the 'survdiff' function in R
For continuous numerical clinical features, two-tailed Student's t test with unequal variance (Lehmann and Romano 2005) was applied to compare the clinical values between two tumor subtypes using 't.test' function in R
For multi-class clinical features (nominal or ordinal), Chi-square tests (Greenwood and Nikulin 1996) were used to estimate the P values using the 'chisq.test' function in R
For binary clinical features, two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
This is an experimental feature. The full results of the analysis summarized in this report can be downloaded from the TCGA Data Coordination Center.