Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1q gain	4 (2%)	173	0.21424	1	0.55985	1	NA	NA	NA	NA	0.53005	1	0.82231	1
3p gain	4 (2%)	173	0.36207	1	0.82446	1	NA	NA	NA	NA	0.15012	1	0.29015	1
3q gain	6 (3%)	171	0.1901	1	0.66795	1	0.10877	1	0.023817	1	0.2882	1	0.1005	1
7p gain	15 (8%)	162	0.019482	1	0.090043	1	0.13849	1	0.63749	1	0.7866	1	0.57299	1
7q gain	12 (7%)	165	0.098885	1	0.17056	1	0.27477	1	0.92588	1	0.6628	1	0.37629	1
8p gain	8 (5%)	169	0.050063	1	1	1	0.73795	1	0.43954	1	1	1	0.70709	1
8q gain	17 (10%)	160	1.19e-05	0.00163	0.56976	1	0.43756	1	0.28361	1	0.26234	1	0.11214	1
9q gain	5 (3%)	172	0.090439	1	0.38742	1	0.26608	1	0.82289	1	0.6511	1	0.84504	1
12q gain	3 (2%)	174	0.15977	1	NA	NA	NA	NA	NA	NA	0.033139	1	0.075649	1
16p gain	3 (2%)	174	0.4593	1	0.77992	1	NA	NA	NA	NA	0.45827	1	0.77397	1
16q gain	3 (2%)	174	0.4593	1	0.77992	1	NA	NA	NA	NA	0.45827	1	0.77397	1
5q loss	3 (2%)	174	0.054307	1	0.052547	1	NA	NA	NA	NA	0.11388	1	1	1
6q loss	7 (4%)	170	0.027804	1	0.15594	1	0.13188	1	0.011135	1	0.36531	1	0.12466	1
8p loss	46 (26%)	131	0.00014397	0.0196	0.0002276	0.0305	0.016381	1	0.004055	0.535	0.00016465	0.0222	0.68097	1
8q loss	4 (2%)	173	0.032681	1	0.38742	1	0.26608	1	0.10152	1	0.042308	1	0.39458	1
10p loss	6 (3%)	171	0.16241	1	0.28546	1	0.37701	1	0.44843	1	0.2882	1	0.12214	1
10q loss	5 (3%)	172	0.38699	1	0.73459	1	0.53023	1	1	1	0.57038	1	1	1
12p loss	9 (5%)	168	0.16131	1	0.073002	1	0.66357	1	1	1	0.053909	1	0.24599	1
13q loss	12 (7%)	165	0.0035925	0.478	0.20394	1	0.025631	1	0.3017	1	0.16655	1	0.37509	1
16q loss	22 (12%)	155	8.5871e-06	0.00119	0.11236	1	0.18884	1	0.077992	1	0.17349	1	0.61465	1
17p loss	18 (10%)	159	6.0417e-06	0.00084	0.15571	1	0.29913	1	0.035474	1	0.49918	1	0.60352	1
18p loss	19 (11%)	158	2.6611e-06	0.000373	0.20131	1	0.66084	1	0.18628	1	0.048562	1	0.011598	1
18q loss	24 (14%)	153	1.5582e-09	2.2e-07	0.41889	1	0.32035	1	0.068053	1	0.087047	1	0.066793	1
20p loss	4 (2%)	173	0.56993	1	0.18824	1	0.32873	1	0.14047	1	0.0057454	0.753	0.016054	1
21q loss	4 (2%)	173	0.21424	1	0.49337	1	NA	NA	NA	NA	0.26584	1	1	1
22q loss	6 (3%)	171	0.026193	1	0.38819	1	0.32173	1	0.11338	1	0.38796	1	1	1