Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1q21.3)	10 (6%)	167	0.073131	1	0.3615	1	0.53402	1	0.72559	1	0.078721	1	1	1
Amp Peak  2(3q26.2)	25 (14%)	152	0.0019527	0.437	0.26658	1	0.73016	1	0.63072	1	0.93154	1	0.37677	1
Amp Peak  3(7p15.3)	33 (19%)	144	0.0018538	0.417	0.10747	1	0.063349	1	0.11261	1	0.87008	1	0.55016	1
Amp Peak  4(8p11.22)	16 (9%)	161	0.00044939	0.105	0.48112	1	0.28577	1	0.49126	1	0.58671	1	0.45411	1
Amp Peak  5(8q21.13)	44 (25%)	133	3.7776e-10	9.71e-08	0.010139	1	0.065501	1	0.039973	1	0.37234	1	0.31317	1
Amp Peak  6(10q21.2)	10 (6%)	167	0.0094753	1	0.43394	1	0.11904	1	0.096187	1	0.27848	1	1	1
Amp Peak  7(12q24.32)	7 (4%)	170	0.0007494	0.173	0.26409	1	0.67472	1	1	1	0.45573	1	0.86407	1
Amp Peak  8(14q21.1)	8 (5%)	169	0.10704	1	0.54335	1	0.13188	1	0.29781	1	0.82792	1	0.26539	1
Amp Peak  9(Xp22.11)	5 (3%)	172	0.32527	1	0.86335	1	0.85835	1	0.86326	1	0.20956	1	0.39552	1
Amp Peak 10(Xp22.11)	5 (3%)	172	0.62006	1	0.61897	1	0.55114	1	0.68764	1	0.75508	1	0.32525	1
Amp Peak 11(Xp21.1)	4 (2%)	173	0.69314	1	0.38742	1	0.83946	1	1	1	0.26584	1	0.66552	1
Amp Peak 12(Xq21.1)	7 (4%)	170	0.35101	1	0.20271	1	0.21227	1	0.43756	1	0.40645	1	0.77145	1
Amp Peak 13(Xq21.1)	5 (3%)	172	0.071244	1	0.004343	0.934	0.51009	1	0.37742	1	0.86904	1	0.84504	1
Amp Peak 14(Xq21.31)	5 (3%)	172	0.090439	1	0.27462	1	0.55114	1	0.23385	1	0.70251	1	1	1
Amp Peak 15(Xq25)	4 (2%)	173	0.032681	1	0.23732	1	0.29015	1	0.63147	1	0.40376	1	0.13283	1
Amp Peak 16(Xq25)	6 (3%)	171	1	1	0.32241	1	0.19283	1	0.32683	1	0.19705	1	0.40481	1
Amp Peak 17(Xq27.1)	9 (5%)	168	0.0040831	0.89	0.43394	1	1	1	0.81496	1	0.064807	1	0.023354	1
Del Peak  1(1p31.3)	21 (12%)	156	0.043113	1	0.0022468	0.499	0.018903	1	0.0018156	0.412	0.1874	1	0.15206	1
Del Peak  2(1p21.3)	17 (10%)	160	0.0059346	1	0.74485	1	0.86654	1	0.51844	1	0.074139	1	0.88997	1
Del Peak  3(1q23.1)	8 (5%)	169	0.063537	1	0.12698	1	0.21227	1	0.042984	1	0.057866	1	0.70709	1
Del Peak  4(1q42.13)	17 (10%)	160	0.11416	1	0.012273	1	0.87467	1	0.71289	1	0.2696	1	0.79135	1
Del Peak  5(2q22.1)	21 (12%)	156	9.662e-05	0.0231	0.0042118	0.914	0.58588	1	0.31307	1	0.012144	1	0.0077223	1
Del Peak  6(2q22.3)	23 (13%)	154	4.4981e-05	0.0109	0.031915	1	0.039826	1	0.011246	1	0.0037968	0.832	0.085486	1
Del Peak  7(3p13)	28 (16%)	149	0.3867	1	0.087019	1	0.47978	1	0.88456	1	0.19451	1	0.11673	1
Del Peak  8(3q29)	12 (7%)	165	0.4061	1	0.21243	1	0.098091	1	0.14951	1	0.57859	1	1	1
Del Peak  9(4q28.1)	12 (7%)	165	0.01722	1	0.0014135	0.324	0.18891	1	0.62246	1	0.26272	1	0.18082	1
Del Peak 10(5q11.2)	29 (16%)	148	2.3977e-06	0.000587	0.029416	1	0.79837	1	0.95606	1	0.59893	1	0.68	1
Del Peak 11(5q21.1)	31 (18%)	146	1.702e-10	4.41e-08	7.3229e-06	0.00179	0.14903	1	0.46996	1	0.29941	1	0.53755	1
Del Peak 12(6q15)	56 (32%)	121	5.0064e-16	1.32e-13	7.813e-10	2e-07	0.00090256	0.208	0.0020894	0.466	0.00027634	0.0647	0.82396	1
Del Peak 13(7q36.1)	8 (5%)	169	0.53815	1	0.3485	1	0.53402	1	0.72559	1	0.69027	1	0.56445	1
Del Peak 14(8p21.3)	106 (60%)	71	2.8371e-08	7.12e-06	4.632e-05	0.0112	0.047411	1	0.059409	1	0.0018351	0.415	0.05619	1
Del Peak 15(8p11.21)	59 (33%)	118	0.011607	1	0.00020353	0.048	0.064698	1	0.019301	1	0.28107	1	0.20691	1
Del Peak 16(10q23.31)	63 (36%)	114	1.5859e-07	3.95e-05	1.8793e-05	0.00457	6.8894e-05	0.0165	0.021394	1	0.040829	1	0.047161	1
Del Peak 17(11q23.2)	20 (11%)	157	0.12096	1	0.22226	1	0.75389	1	0.75294	1	0.38743	1	0.60194	1
Del Peak 18(12p13.2)	38 (21%)	139	0.00052859	0.123	0.031041	1	0.70192	1	0.65088	1	0.052721	1	0.85631	1
Del Peak 19(13q14.13)	81 (46%)	96	0.00011291	0.0269	0.0050315	1	0.024534	1	0.025132	1	0.30576	1	0.36346	1
Del Peak 20(16q22.3)	57 (32%)	120	6.537e-07	0.000161	0.014621	1	0.015006	1	0.15439	1	0.018453	1	0.079184	1
Del Peak 21(16q24.1)	72 (41%)	105	2.1761e-10	5.61e-08	0.0079672	1	0.060543	1	0.37258	1	0.039497	1	0.032462	1
Del Peak 22(17p13.1)	45 (25%)	132	3.9696e-09	1.01e-06	0.21604	1	0.069412	1	0.0032849	0.723	0.2864	1	0.061076	1
Del Peak 23(17q21.31)	34 (19%)	143	0.0015637	0.357	0.00027461	0.0645	0.0042644	0.921	0.0046383	0.993	0.53264	1	0.28939	1
Del Peak 24(18q22.1)	44 (25%)	133	9.0757e-11	2.36e-08	0.62498	1	0.66665	1	0.10794	1	0.053374	1	0.15228	1
Del Peak 25(18q23)	50 (28%)	127	1.2034e-13	3.16e-11	0.52522	1	0.42262	1	0.12961	1	0.10403	1	0.44729	1
Del Peak 26(21q22.2)	58 (33%)	119	2.7962e-08	7.05e-06	2.4954e-12	6.54e-10	5.2391e-09	1.33e-06	2.6757e-07	6.61e-05	0.13836	1	0.0028446	0.629
Del Peak 27(21q22.3)	57 (32%)	120	6.1063e-08	1.53e-05	8.7676e-11	2.29e-08	1.2598e-09	3.21e-07	2.3796e-07	5.9e-05	0.056678	1	0.00016952	0.0402