Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
5p gain	4 (14%)	25	0.26778	1	1	1	1	1	1	1
5q gain	4 (14%)	25	0.26778	1	0.51834	1	1	1	1	1
6p gain	4 (14%)	25	0.62208	1	0.51834	1	0.10673	1	0.2354	1
6q gain	5 (17%)	24	0.053909	1	0.3868	1	0.047619	1	0.092586	1
7p gain	5 (17%)	24	0.62208	1	0.3868	1	0.63218	1	0.28256	1
7q gain	5 (17%)	24	0.62208	1	0.3868	1	0.63218	1	0.28256	1
8p gain	5 (17%)	24	0.12606	1	0.70359	1	0.63218	1	0.68877	1
8q gain	4 (14%)	25	1	1	0.16867	1	1	1	1	1
9p gain	3 (10%)	26	1	1	1	1	1	1	1	1
9q gain	5 (17%)	24	0.33864	1	0.47573	1	0.34319	1	0.46646	1
16p gain	3 (10%)	26	1	1	0.35276	1	0.57307	1	0.60591	1
17q gain	3 (10%)	26	0.26847	1	0.35276	1	0.57307	1	0.10345	1
18q gain	3 (10%)	26	1	1	0.048166	1	1	1	1	1
20p gain	4 (14%)	25	0.26778	1	0.11562	1	1	1	1	1
20q gain	5 (17%)	24	0.62208	1	0.033009	1	1	1	1	1
1p loss	5 (17%)	24	0.12606	1	0.2687	1	0.14395	1	0.055804	1
1q loss	3 (10%)	26	0.26847	1	1	1	1	1	1	1
2p loss	3 (10%)	26	0.26847	1	0.16995	1	0.57307	1	0.60591	1
2q loss	3 (10%)	26	1	1	0.35276	1	1	1	1	1
3p loss	4 (14%)	25	0.013894	1	0.51834	1	0.10673	1	0.2354	1
3q loss	5 (17%)	24	0.053909	1	1	1	0.34319	1	0.46646	1
5p loss	3 (10%)	26	1	1	0.47318	1	1	1	1	1
6p loss	6 (21%)	23	1	1	0.44284	1	0.36398	1	0.48777	1
7p loss	3 (10%)	26	0.26847	1	0.16995	1	0.57307	1	0.60591	1
7q loss	4 (14%)	25	1	1	0.11562	1	0.60591	1	0.66654	1
8p loss	5 (17%)	24	1	1	1	1	1	1	0.14917	1
9p loss	5 (17%)	24	1	1	0.052461	1	0.34319	1	0.026163	1
9q loss	3 (10%)	26	0.26847	1	1	1	1	1	1	1
10p loss	8 (28%)	21	0.10965	1	0.59097	1	1	1	0.33975	1
10q loss	10 (34%)	19	0.04364	1	0.38069	1	0.064097	1	0.071807	1
11p loss	7 (24%)	22	1	1	0.097464	1	0.40996	1	0.064734	1
11q loss	6 (21%)	23	0.6457	1	0.22239	1	0.18336	1	0.36272	1
13q loss	12 (41%)	17	0.27317	1	0.12995	1	0.71629	1	0.56007	1
14q loss	8 (28%)	21	1	1	0.33418	1	0.40576	1	0.44308	1
15q loss	6 (21%)	23	0.16385	1	0.18349	1	0.020471	1	0.046339	1
16p loss	5 (17%)	24	1	1	1	1	0.34319	1	0.46646	1
16q loss	9 (31%)	20	1	1	0.59866	1	0.68816	1	0.36832	1
17p loss	5 (17%)	24	0.62208	1	0.12185	1	0.63218	1	0.68877	1
17q loss	3 (10%)	26	1	1	0.25424	1	0.57307	1	0.60591	1
18p loss	4 (14%)	25	1	1	1	1	0.60591	1	0.66654	1
18q loss	4 (14%)	25	1	1	1	1	0.60591	1	0.66654	1
19q loss	3 (10%)	26	0.26847	1	0.35276	1	0.57307	1	0.10345	1
20p loss	6 (21%)	23	0.018479	1	0.85411	1	0.18336	1	0.36272	1
21q loss	6 (21%)	23	0.6457	1	0.72906	1	0.66284	1	0.74064	1
22q loss	11 (38%)	18	1	1	0.63945	1	0.70211	1	0.81668	1
Xq loss	6 (21%)	23	1	1	0.072797	1	1	1	1	1