Molecular subtypes	CN_CNMF		METHLYATION_CNMF		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1q24.3)	10 (34%)	19	0.69415	1	0.88929	1	1	1	1	1
Amp Peak  2(4p15.2)	8 (28%)	21	1	1	0.51563	1	0.69682	1	1	1
Amp Peak  3(5p14.2)	8 (28%)	21	0.67063	1	0.87083	1	0.69682	1	1	1
Amp Peak  4(5p14.1)	9 (31%)	20	0.095903	1	0.27828	1	0.45427	1	0.78411	1
Amp Peak  5(6p21.1)	7 (24%)	22	1	1	0.21558	1	0.40996	1	0.74346	1
Amp Peak  6(6q25.1)	9 (31%)	20	0.047841	1	0.0095418	1	0.12964	1	0.27836	1
Amp Peak  7(7p15.3)	10 (34%)	19	0.432	1	0.042391	1	0.11421	1	0.15191	1
Amp Peak  8(12p13.32)	7 (24%)	22	0.37458	1	0.083256	1	0.09272	1	0.22525	1
Amp Peak  9(12q14.1)	14 (48%)	15	1.0521e-05	0.00118	0.0037488	0.409	0.00011573	0.0128	0.00020238	0.0223
Amp Peak 10(17p11.2)	7 (24%)	22	0.20205	1	1	1	0.19167	1	0.10279	1
Amp Peak 11(19p13.2)	12 (41%)	17	0.43844	1	0.12995	1	0.12975	1	0.036116	1
Del Peak  1(1q44)	8 (28%)	21	0.43275	1	0.073371	1	0.69682	1	1	1
Del Peak  2(2q37.3)	14 (48%)	15	0.44973	1	0.58319	1	0.2723	1	0.34532	1
Del Peak  3(3q25.1)	9 (31%)	20	0.69415	1	0.47595	1	0.12964	1	0.038823	1
Del Peak  4(4q35.1)	13 (45%)	16	1	1	0.18417	1	0.26417	1	0.26417	1
Del Peak  5(5q23.3)	6 (21%)	23	0.16385	1	0.72906	1	1	1	1	1
Del Peak  6(9p21.3)	11 (38%)	18	0.69645	1	0.22602	1	0.70211	1	0.23994	1
Del Peak  7(11p15.4)	12 (41%)	17	1	1	0.36351	1	1	1	0.43786	1
Del Peak  8(11q22.3)	15 (52%)	14	0.44973	1	0.7233	1	0.71525	1	0.84667	1
Del Peak  9(12p12.3)	9 (31%)	20	0.23706	1	1	1	0.45427	1	0.78411	1
Del Peak 10(13q14.2)	19 (66%)	10	0.432	1	0.20055	1	0.43348	1	0.62939	1
Del Peak 11(15q13.3)	10 (34%)	19	0.432	1	0.34033	1	0.11421	1	0.15191	1
Del Peak 12(17p13.1)	8 (28%)	21	0.10965	1	0.19479	1	0.40576	1	0.44308	1
Del Peak 13(17q25.3)	6 (21%)	23	1	1	1	1	1	1	1	1
Del Peak 14(19q13.32)	11 (38%)	18	0.44856	1	0.28211	1	0.46568	1	0.42177	1
Del Peak 15(21q22.3)	11 (38%)	18	1	1	0.28211	1	0.70211	1	0.81668	1
Del Peak 16(Xq21.1)	15 (52%)	14	1	1	0.4606	1	0.46214	1	0.57896	1
Del Peak 17(Xq28)	12 (41%)	17	0.27317	1	0.024021	1	0.27418	1	0.25097	1