This pipeline computes the correlation between significant copy number variation (cnv focal) genes and selected clinical features.
Testing the association between subtypes identified by 72 different clustering approaches and 9 clinical features across 161 patients, no significant finding detected with Q value < 0.25.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 1(1p36.22) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 2(1q21.3) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 3(1q42.3) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 4(3q26.31) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 5(5p13.1) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 6(6p21.1) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 7(6q12) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 8(7p11.2) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 9(7q21.2) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 10(8p23.1) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 11(8q24.21) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 12(9p24.1) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 13(9q34.3) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 14(10q26.13) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 15(11p13) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 16(11q13.3) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 17(12p12.1) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 18(12q15) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 19(13q12.3) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 20(13q22.1) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 21(15q26.1) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 22(17q12) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 23(18q11.2) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 24(19q12) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 25(20q13.2) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Amp Peak 26(Xq27.3) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 1(1p36.11) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 2(1p31.1) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 3(1q44) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 4(2q32.1) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 5(2q33.3) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 6(2q37.2) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 7(3p26.1) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 8(3p14.2) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 9(3q26.31) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 10(4p16.3) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 11(4q22.1) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 12(4q35.1) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 13(5q11.2) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 14(6p25.3) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 15(6q26) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 16(6q27) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 17(7q31.1) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 18(7q36.3) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 19(8p23.2) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 20(9p23) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 21(9p21.3) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 22(9q21.11) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 23(10p14) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 24(10q22.3) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 25(10q23.31) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 26(11p15.5) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 27(11q23.2) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 28(12p13.2) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 29(14q21.1) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 30(14q32.33) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 31(15q11.2) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 32(15q15.1) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 33(16p13.3) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 34(16q23.1) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 35(17p12) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 36(17q24.3) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 37(18q21.2) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 38(18q22.3) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 39(19p13.3) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 40(19q13.11) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 41(20p12.1) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 42(21q11.2) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 43(22q13.31) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 44(Xp22.2) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 45(Xp21.1) mutation analysis'. These subtypes do not correlate to any clinical features.
-
2 subtypes identified in current cancer cohort by 'Del Peak 46(Xq21.33) mutation analysis'. These subtypes do not correlate to any clinical features.
Clinical Features |
Time to Death |
AGE | GENDER |
HISTOLOGICAL TYPE |
PATHOLOGY T |
PATHOLOGY N |
PATHOLOGICSPREAD(M) |
TUMOR STAGE |
RADIATIONS RADIATION REGIMENINDICATION |
Statistical Tests | logrank test | t-test | Fisher's exact test | Chi-square test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test |
Amp Peak 1(1p36 22) |
0.149 (1.00) |
0.658 (1.00) |
0.0335 (1.00) |
0.0874 (1.00) |
0.162 (1.00) |
0.703 (1.00) |
0.22 (1.00) |
0.253 (1.00) |
0.525 (1.00) |
Amp Peak 2(1q21 3) |
0.713 (1.00) |
0.29 (1.00) |
1 (1.00) |
0.132 (1.00) |
0.271 (1.00) |
0.52 (1.00) |
0.551 (1.00) |
0.716 (1.00) |
0.0327 (1.00) |
Amp Peak 3(1q42 3) |
0.572 (1.00) |
0.964 (1.00) |
0.377 (1.00) |
0.0296 (1.00) |
0.75 (1.00) |
0.55 (1.00) |
0.482 (1.00) |
0.435 (1.00) |
0.149 (1.00) |
Amp Peak 4(3q26 31) |
0.98 (1.00) |
0.518 (1.00) |
0.0346 (1.00) |
0.0622 (1.00) |
0.386 (1.00) |
0.494 (1.00) |
0.411 (1.00) |
0.552 (1.00) |
1 (1.00) |
Amp Peak 5(5p13 1) |
0.899 (1.00) |
0.345 (1.00) |
0.0474 (1.00) |
0.752 (1.00) |
0.383 (1.00) |
0.353 (1.00) |
0.683 (1.00) |
0.0514 (1.00) |
0.126 (1.00) |
Amp Peak 6(6p21 1) |
0.0134 (1.00) |
0.384 (1.00) |
0.155 (1.00) |
0.604 (1.00) |
0.0482 (1.00) |
0.432 (1.00) |
0.0515 (1.00) |
0.145 (1.00) |
0.134 (1.00) |
Amp Peak 7(6q12) |
0.372 (1.00) |
0.688 (1.00) |
1 (1.00) |
0.773 (1.00) |
0.475 (1.00) |
0.911 (1.00) |
0.859 (1.00) |
0.86 (1.00) |
0.272 (1.00) |
Amp Peak 8(7p11 2) |
0.881 (1.00) |
0.017 (1.00) |
0.144 (1.00) |
0.417 (1.00) |
0.0615 (1.00) |
0.934 (1.00) |
0.167 (1.00) |
0.189 (1.00) |
0.393 (1.00) |
Amp Peak 9(7q21 2) |
0.723 (1.00) |
0.0551 (1.00) |
0.0765 (1.00) |
0.729 (1.00) |
0.0744 (1.00) |
0.364 (1.00) |
0.065 (1.00) |
0.202 (1.00) |
1 (1.00) |
Amp Peak 10(8p23 1) |
0.541 (1.00) |
0.346 (1.00) |
0.184 (1.00) |
0.82 (1.00) |
0.417 (1.00) |
0.884 (1.00) |
0.578 (1.00) |
0.521 (1.00) |
0.0607 (1.00) |
Amp Peak 11(8q24 21) |
0.676 (1.00) |
0.0274 (1.00) |
0.507 (1.00) |
0.295 (1.00) |
0.00211 (1.00) |
0.427 (1.00) |
0.629 (1.00) |
0.489 (1.00) |
1 (1.00) |
Amp Peak 12(9p24 1) |
0.878 (1.00) |
0.785 (1.00) |
0.816 (1.00) |
0.841 (1.00) |
0.156 (1.00) |
0.326 (1.00) |
1 (1.00) |
0.048 (1.00) |
0.138 (1.00) |
Amp Peak 13(9q34 3) |
0.335 (1.00) |
0.0292 (1.00) |
1 (1.00) |
0.16 (1.00) |
0.3 (1.00) |
0.56 (1.00) |
0.717 (1.00) |
0.178 (1.00) |
0.0922 (1.00) |
Amp Peak 14(10q26 13) |
0.176 (1.00) |
0.508 (1.00) |
0.553 (1.00) |
0.786 (1.00) |
0.624 (1.00) |
0.97 (1.00) |
0.595 (1.00) |
0.636 (1.00) |
0.272 (1.00) |
Amp Peak 15(11p13) |
0.991 (1.00) |
0.821 (1.00) |
0.385 (1.00) |
0.607 (1.00) |
0.65 (1.00) |
0.0409 (1.00) |
0.838 (1.00) |
0.274 (1.00) |
0.575 (1.00) |
Amp Peak 16(11q13 3) |
0.124 (1.00) |
0.528 (1.00) |
0.0898 (1.00) |
0.49 (1.00) |
0.583 (1.00) |
0.486 (1.00) |
0.847 (1.00) |
0.37 (1.00) |
1 (1.00) |
Amp Peak 17(12p12 1) |
0.676 (1.00) |
0.894 (1.00) |
0.568 (1.00) |
0.266 (1.00) |
0.0403 (1.00) |
0.00888 (1.00) |
0.38 (1.00) |
0.0104 (1.00) |
0.59 (1.00) |
Amp Peak 18(12q15) |
0.459 (1.00) |
0.735 (1.00) |
0.442 (1.00) |
0.488 (1.00) |
0.73 (1.00) |
0.144 (1.00) |
0.335 (1.00) |
0.382 (1.00) |
0.298 (1.00) |
Amp Peak 19(13q12 3) |
0.177 (1.00) |
0.594 (1.00) |
0.094 (1.00) |
0.511 (1.00) |
0.378 (1.00) |
0.0792 (1.00) |
0.508 (1.00) |
0.196 (1.00) |
1 (1.00) |
Amp Peak 20(13q22 1) |
0.674 (1.00) |
0.705 (1.00) |
0.022 (1.00) |
0.611 (1.00) |
0.669 (1.00) |
0.759 (1.00) |
0.224 (1.00) |
0.0697 (1.00) |
1 (1.00) |
Amp Peak 21(15q26 1) |
0.716 (1.00) |
0.185 (1.00) |
0.269 (1.00) |
0.325 (1.00) |
0.202 (1.00) |
0.363 (1.00) |
0.597 (1.00) |
0.618 (1.00) |
0.599 (1.00) |
Amp Peak 22(17q12) |
0.617 (1.00) |
0.0884 (1.00) |
0.147 (1.00) |
0.16 (1.00) |
0.122 (1.00) |
0.322 (1.00) |
0.0042 (1.00) |
0.385 (1.00) |
0.61 (1.00) |
Amp Peak 23(18q11 2) |
0.0788 (1.00) |
0.425 (1.00) |
0.209 (1.00) |
0.148 (1.00) |
0.258 (1.00) |
0.18 (1.00) |
0.563 (1.00) |
0.467 (1.00) |
0.126 (1.00) |
Amp Peak 24(19q12) |
0.223 (1.00) |
0.262 (1.00) |
0.591 (1.00) |
0.0429 (1.00) |
0.235 (1.00) |
0.151 (1.00) |
0.563 (1.00) |
0.561 (1.00) |
0.02 (1.00) |
Amp Peak 25(20q13 2) |
0.168 (1.00) |
0.337 (1.00) |
0.00481 (1.00) |
0.249 (1.00) |
0.00593 (1.00) |
0.482 (1.00) |
0.651 (1.00) |
0.623 (1.00) |
1 (1.00) |
Amp Peak 26(Xq27 3) |
0.515 (1.00) |
0.201 (1.00) |
0.841 (1.00) |
0.651 (1.00) |
0.964 (1.00) |
0.684 (1.00) |
0.8 (1.00) |
0.245 (1.00) |
1 (1.00) |
Del Peak 1(1p36 11) |
0.845 (1.00) |
0.942 (1.00) |
0.462 (1.00) |
0.35 (1.00) |
0.187 (1.00) |
0.954 (1.00) |
0.881 (1.00) |
0.738 (1.00) |
0.599 (1.00) |
Del Peak 2(1p31 1) |
0.64 (1.00) |
0.996 (1.00) |
0.663 (1.00) |
0.0837 (1.00) |
0.922 (1.00) |
0.961 (1.00) |
0.371 (1.00) |
0.57 (1.00) |
0.591 (1.00) |
Del Peak 3(1q44) |
0.0152 (1.00) |
0.0614 (1.00) |
0.763 (1.00) |
0.786 (1.00) |
0.197 (1.00) |
0.497 (1.00) |
0.587 (1.00) |
0.796 (1.00) |
1 (1.00) |
Del Peak 4(2q32 1) |
0.323 (1.00) |
0.623 (1.00) |
0.808 (1.00) |
0.0483 (1.00) |
0.401 (1.00) |
0.31 (1.00) |
0.259 (1.00) |
0.575 (1.00) |
0.471 (1.00) |
Del Peak 5(2q33 3) |
0.185 (1.00) |
0.412 (1.00) |
0.431 (1.00) |
0.0244 (1.00) |
0.197 (1.00) |
0.157 (1.00) |
0.0889 (1.00) |
0.783 (1.00) |
0.0778 (1.00) |
Del Peak 6(2q37 2) |
0.571 (1.00) |
0.136 (1.00) |
0.355 (1.00) |
0.00529 (1.00) |
0.6 (1.00) |
0.28 (1.00) |
0.22 (1.00) |
0.383 (1.00) |
0.525 (1.00) |
Del Peak 7(3p26 1) |
0.575 (1.00) |
0.506 (1.00) |
0.573 (1.00) |
0.856 (1.00) |
0.425 (1.00) |
0.509 (1.00) |
0.818 (1.00) |
0.924 (1.00) |
1 (1.00) |
Del Peak 8(3p14 2) |
0.934 (1.00) |
0.633 (1.00) |
0.3 (1.00) |
0.113 (1.00) |
0.157 (1.00) |
0.774 (1.00) |
0.749 (1.00) |
0.448 (1.00) |
0.652 (1.00) |
Del Peak 9(3q26 31) |
0.683 (1.00) |
0.598 (1.00) |
1 (1.00) |
0.78 (1.00) |
0.437 (1.00) |
0.205 (1.00) |
0.145 (1.00) |
0.838 (1.00) |
0.347 (1.00) |
Del Peak 10(4p16 3) |
0.228 (1.00) |
0.67 (1.00) |
0.385 (1.00) |
0.324 (1.00) |
0.164 (1.00) |
0.881 (1.00) |
0.0967 (1.00) |
0.937 (1.00) |
0.641 (1.00) |
Del Peak 11(4q22 1) |
0.258 (1.00) |
0.353 (1.00) |
0.741 (1.00) |
0.124 (1.00) |
0.0548 (1.00) |
0.214 (1.00) |
0.827 (1.00) |
0.458 (1.00) |
0.0646 (1.00) |
Del Peak 12(4q35 1) |
0.146 (1.00) |
0.275 (1.00) |
0.406 (1.00) |
0.0662 (1.00) |
0.15 (1.00) |
0.382 (1.00) |
0.699 (1.00) |
0.109 (1.00) |
0.357 (1.00) |
Del Peak 13(5q11 2) |
0.361 (1.00) |
0.179 (1.00) |
0.723 (1.00) |
0.00439 (1.00) |
0.00341 (1.00) |
0.68 (1.00) |
0.182 (1.00) |
0.524 (1.00) |
0.619 (1.00) |
Del Peak 14(6p25 3) |
0.161 (1.00) |
0.608 (1.00) |
0.239 (1.00) |
0.0052 (1.00) |
0.0783 (1.00) |
0.341 (1.00) |
0.281 (1.00) |
0.936 (1.00) |
1 (1.00) |
Del Peak 15(6q26) |
0.347 (1.00) |
0.5 (1.00) |
1 (1.00) |
0.544 (1.00) |
0.702 (1.00) |
0.473 (1.00) |
1 (1.00) |
0.611 (1.00) |
0.298 (1.00) |
Del Peak 16(6q27) |
0.602 (1.00) |
0.328 (1.00) |
0.845 (1.00) |
0.265 (1.00) |
0.768 (1.00) |
0.526 (1.00) |
0.863 (1.00) |
0.775 (1.00) |
0.285 (1.00) |
Del Peak 17(7q31 1) |
0.0803 (1.00) |
0.657 (1.00) |
0.22 (1.00) |
0.201 (1.00) |
0.769 (1.00) |
0.00189 (1.00) |
0.561 (1.00) |
0.483 (1.00) |
1 (1.00) |
Del Peak 18(7q36 3) |
0.257 (1.00) |
0.393 (1.00) |
0.301 (1.00) |
0.16 (1.00) |
0.188 (1.00) |
0.00573 (1.00) |
0.92 (1.00) |
0.0236 (1.00) |
1 (1.00) |
Del Peak 19(8p23 2) |
0.531 (1.00) |
0.056 (1.00) |
0.269 (1.00) |
0.606 (1.00) |
0.367 (1.00) |
0.208 (1.00) |
0.881 (1.00) |
0.355 (1.00) |
1 (1.00) |
Del Peak 20(9p23) |
0.0121 (1.00) |
0.855 (1.00) |
1 (1.00) |
0.115 (1.00) |
0.301 (1.00) |
0.122 (1.00) |
0.409 (1.00) |
0.0136 (1.00) |
0.38 (1.00) |
Del Peak 21(9p21 3) |
0.2 (1.00) |
0.879 (1.00) |
0.618 (1.00) |
0.378 (1.00) |
0.0995 (1.00) |
0.353 (1.00) |
0.578 (1.00) |
0.759 (1.00) |
0.357 (1.00) |
Del Peak 22(9q21 11) |
0.15 (1.00) |
0.248 (1.00) |
1 (1.00) |
0.102 (1.00) |
0.249 (1.00) |
0.873 (1.00) |
0.0611 (1.00) |
0.138 (1.00) |
0.246 (1.00) |
Del Peak 23(10p14) |
0.155 (1.00) |
0.697 (1.00) |
1 (1.00) |
0.16 (1.00) |
0.137 (1.00) |
0.207 (1.00) |
0.37 (1.00) |
1 (1.00) |
0.508 (1.00) |
Del Peak 24(10q22 3) |
0.881 (1.00) |
0.188 (1.00) |
0.505 (1.00) |
0.466 (1.00) |
0.0252 (1.00) |
0.465 (1.00) |
0.383 (1.00) |
0.937 (1.00) |
0.559 (1.00) |
Del Peak 25(10q23 31) |
0.316 (1.00) |
0.216 (1.00) |
0.34 (1.00) |
0.378 (1.00) |
0.000679 (0.44) |
0.91 (1.00) |
0.509 (1.00) |
0.631 (1.00) |
1 (1.00) |
Del Peak 26(11p15 5) |
0.881 (1.00) |
0.713 (1.00) |
0.849 (1.00) |
0.00209 (1.00) |
0.0312 (1.00) |
0.647 (1.00) |
0.934 (1.00) |
0.802 (1.00) |
0.324 (1.00) |
Del Peak 27(11q23 2) |
0.32 (1.00) |
0.899 (1.00) |
0.329 (1.00) |
0.17 (1.00) |
0.509 (1.00) |
0.808 (1.00) |
0.26 (1.00) |
0.859 (1.00) |
0.285 (1.00) |
Del Peak 28(12p13 2) |
0.518 (1.00) |
0.419 (1.00) |
0.653 (1.00) |
0.228 (1.00) |
0.301 (1.00) |
0.843 (1.00) |
0.829 (1.00) |
0.2 (1.00) |
0.559 (1.00) |
Del Peak 29(14q21 1) |
0.712 (1.00) |
0.328 (1.00) |
0.247 (1.00) |
0.14 (1.00) |
0.0217 (1.00) |
0.27 (1.00) |
0.105 (1.00) |
0.39 (1.00) |
0.311 (1.00) |
Del Peak 30(14q32 33) |
0.0607 (1.00) |
0.319 (1.00) |
0.853 (1.00) |
0.435 (1.00) |
0.0757 (1.00) |
0.146 (1.00) |
0.00372 (1.00) |
0.0958 (1.00) |
0.0986 (1.00) |
Del Peak 31(15q11 2) |
0.229 (1.00) |
0.289 (1.00) |
0.352 (1.00) |
0.00357 (1.00) |
0.0185 (1.00) |
0.0473 (1.00) |
0.766 (1.00) |
0.454 (1.00) |
0.0922 (1.00) |
Del Peak 32(15q15 1) |
0.229 (1.00) |
0.864 (1.00) |
0.269 (1.00) |
0.0118 (1.00) |
0.011 (1.00) |
0.0024 (1.00) |
0.213 (1.00) |
0.0854 (1.00) |
0.0986 (1.00) |
Del Peak 33(16p13 3) |
0.587 (1.00) |
0.0331 (1.00) |
0.343 (1.00) |
0.00676 (1.00) |
0.279 (1.00) |
0.67 (1.00) |
0.4 (1.00) |
0.842 (1.00) |
0.489 (1.00) |
Del Peak 34(16q23 1) |
0.0605 (1.00) |
0.904 (1.00) |
0.0291 (1.00) |
0.101 (1.00) |
0.0569 (1.00) |
0.237 (1.00) |
0.0558 (1.00) |
0.197 (1.00) |
0.343 (1.00) |
Del Peak 35(17p12) |
0.0155 (1.00) |
0.622 (1.00) |
0.501 (1.00) |
0.0479 (1.00) |
0.000767 (0.496) |
0.201 (1.00) |
0.535 (1.00) |
0.257 (1.00) |
0.0468 (1.00) |
Del Peak 36(17q24 3) |
0.74 (1.00) |
0.0724 (1.00) |
0.65 (1.00) |
0.0476 (1.00) |
0.787 (1.00) |
0.0234 (1.00) |
0.5 (1.00) |
0.723 (1.00) |
1 (1.00) |
Del Peak 37(18q21 2) |
0.306 (1.00) |
0.5 (1.00) |
1 (1.00) |
0.548 (1.00) |
0.049 (1.00) |
0.00876 (1.00) |
0.767 (1.00) |
0.266 (1.00) |
1 (1.00) |
Del Peak 38(18q22 3) |
0.391 (1.00) |
0.65 (1.00) |
1 (1.00) |
0.94 (1.00) |
0.0678 (1.00) |
0.012 (1.00) |
0.727 (1.00) |
0.425 (1.00) |
0.357 (1.00) |
Del Peak 39(19p13 3) |
0.143 (1.00) |
0.811 (1.00) |
0.0549 (1.00) |
0.323 (1.00) |
0.141 (1.00) |
0.391 (1.00) |
0.668 (1.00) |
0.969 (1.00) |
0.0303 (1.00) |
Del Peak 40(19q13 11) |
0.367 (1.00) |
0.51 (1.00) |
1 (1.00) |
0.0149 (1.00) |
0.466 (1.00) |
0.285 (1.00) |
0.469 (1.00) |
0.906 (1.00) |
0.508 (1.00) |
Del Peak 41(20p12 1) |
0.218 (1.00) |
0.868 (1.00) |
1 (1.00) |
0.783 (1.00) |
0.644 (1.00) |
0.728 (1.00) |
0.467 (1.00) |
0.798 (1.00) |
0.161 (1.00) |
Del Peak 42(21q11 2) |
0.911 (1.00) |
0.307 (1.00) |
0.603 (1.00) |
0.306 (1.00) |
0.0276 (1.00) |
0.688 (1.00) |
0.551 (1.00) |
0.982 (1.00) |
0.646 (1.00) |
Del Peak 43(22q13 31) |
0.521 (1.00) |
0.51 (1.00) |
0.728 (1.00) |
0.0285 (1.00) |
0.0354 (1.00) |
0.559 (1.00) |
0.891 (1.00) |
0.957 (1.00) |
0.166 (1.00) |
Del Peak 44(Xp22 2) |
0.364 (1.00) |
0.613 (1.00) |
0.831 (1.00) |
0.00344 (1.00) |
0.337 (1.00) |
0.524 (1.00) |
0.92 (1.00) |
0.883 (1.00) |
1 (1.00) |
Del Peak 45(Xp21 1) |
0.382 (1.00) |
0.977 (1.00) |
0.132 (1.00) |
0.0142 (1.00) |
0.41 (1.00) |
0.26 (1.00) |
0.705 (1.00) |
0.837 (1.00) |
0.591 (1.00) |
Del Peak 46(Xq21 33) |
0.295 (1.00) |
0.94 (1.00) |
1 (1.00) |
0.342 (1.00) |
0.224 (1.00) |
0.46 (1.00) |
0.726 (1.00) |
0.164 (1.00) |
0.508 (1.00) |
Cluster Labels | AMP PEAK 1(1P36.22) MUTATED | AMP PEAK 1(1P36.22) WILD-TYPE |
---|---|---|
Number of samples | 22 | 139 |
Cluster Labels | AMP PEAK 2(1Q21.3) MUTATED | AMP PEAK 2(1Q21.3) WILD-TYPE |
---|---|---|
Number of samples | 50 | 111 |
Cluster Labels | AMP PEAK 3(1Q42.3) MUTATED | AMP PEAK 3(1Q42.3) WILD-TYPE |
---|---|---|
Number of samples | 47 | 114 |
Cluster Labels | AMP PEAK 4(3Q26.31) MUTATED | AMP PEAK 4(3Q26.31) WILD-TYPE |
---|---|---|
Number of samples | 48 | 113 |
Cluster Labels | AMP PEAK 5(5P13.1) MUTATED | AMP PEAK 5(5P13.1) WILD-TYPE |
---|---|---|
Number of samples | 44 | 117 |
Cluster Labels | AMP PEAK 6(6P21.1) MUTATED | AMP PEAK 6(6P21.1) WILD-TYPE |
---|---|---|
Number of samples | 45 | 116 |
Cluster Labels | AMP PEAK 7(6Q12) MUTATED | AMP PEAK 7(6Q12) WILD-TYPE |
---|---|---|
Number of samples | 33 | 128 |
Cluster Labels | AMP PEAK 8(7P11.2) MUTATED | AMP PEAK 8(7P11.2) WILD-TYPE |
---|---|---|
Number of samples | 69 | 92 |
Cluster Labels | AMP PEAK 9(7Q21.2) MUTATED | AMP PEAK 9(7Q21.2) WILD-TYPE |
---|---|---|
Number of samples | 71 | 90 |
Cluster Labels | AMP PEAK 10(8P23.1) MUTATED | AMP PEAK 10(8P23.1) WILD-TYPE |
---|---|---|
Number of samples | 59 | 102 |
Cluster Labels | AMP PEAK 11(8Q24.21) MUTATED | AMP PEAK 11(8Q24.21) WILD-TYPE |
---|---|---|
Number of samples | 102 | 59 |
Cluster Labels | AMP PEAK 12(9P24.1) MUTATED | AMP PEAK 12(9P24.1) WILD-TYPE |
---|---|---|
Number of samples | 22 | 139 |
Cluster Labels | AMP PEAK 13(9Q34.3) MUTATED | AMP PEAK 13(9Q34.3) WILD-TYPE |
---|---|---|
Number of samples | 39 | 122 |
Cluster Labels | AMP PEAK 14(10Q26.13) MUTATED | AMP PEAK 14(10Q26.13) WILD-TYPE |
---|---|---|
Number of samples | 33 | 128 |
Cluster Labels | AMP PEAK 15(11P13) MUTATED | AMP PEAK 15(11P13) WILD-TYPE |
---|---|---|
Number of samples | 25 | 136 |
Cluster Labels | AMP PEAK 16(11Q13.3) MUTATED | AMP PEAK 16(11Q13.3) WILD-TYPE |
---|---|---|
Number of samples | 28 | 133 |
Cluster Labels | AMP PEAK 17(12P12.1) MUTATED | AMP PEAK 17(12P12.1) WILD-TYPE |
---|---|---|
Number of samples | 37 | 124 |
Cluster Labels | AMP PEAK 18(12Q15) MUTATED | AMP PEAK 18(12Q15) WILD-TYPE |
---|---|---|
Number of samples | 35 | 126 |
Cluster Labels | AMP PEAK 19(13Q12.3) MUTATED | AMP PEAK 19(13Q12.3) WILD-TYPE |
---|---|---|
Number of samples | 58 | 103 |
Cluster Labels | AMP PEAK 20(13Q22.1) MUTATED | AMP PEAK 20(13Q22.1) WILD-TYPE |
---|---|---|
Number of samples | 65 | 96 |
Cluster Labels | AMP PEAK 21(15Q26.1) MUTATED | AMP PEAK 21(15Q26.1) WILD-TYPE |
---|---|---|
Number of samples | 40 | 121 |
Cluster Labels | AMP PEAK 22(17Q12) MUTATED | AMP PEAK 22(17Q12) WILD-TYPE |
---|---|---|
Number of samples | 43 | 118 |
Cluster Labels | AMP PEAK 23(18Q11.2) MUTATED | AMP PEAK 23(18Q11.2) WILD-TYPE |
---|---|---|
Number of samples | 44 | 117 |
Cluster Labels | AMP PEAK 24(19Q12) MUTATED | AMP PEAK 24(19Q12) WILD-TYPE |
---|---|---|
Number of samples | 44 | 117 |
Cluster Labels | AMP PEAK 25(20Q13.2) MUTATED | AMP PEAK 25(20Q13.2) WILD-TYPE |
---|---|---|
Number of samples | 99 | 62 |
Cluster Labels | AMP PEAK 26(XQ27.3) MUTATED | AMP PEAK 26(XQ27.3) WILD-TYPE |
---|---|---|
Number of samples | 32 | 129 |
Cluster Labels | DEL PEAK 1(1P36.11) MUTATED | DEL PEAK 1(1P36.11) WILD-TYPE |
---|---|---|
Number of samples | 40 | 121 |
Cluster Labels | DEL PEAK 2(1P31.1) MUTATED | DEL PEAK 2(1P31.1) WILD-TYPE |
---|---|---|
Number of samples | 26 | 135 |
Cluster Labels | DEL PEAK 3(1Q44) MUTATED | DEL PEAK 3(1Q44) WILD-TYPE |
---|---|---|
Number of samples | 12 | 149 |
Cluster Labels | DEL PEAK 4(2Q32.1) MUTATED | DEL PEAK 4(2Q32.1) WILD-TYPE |
---|---|---|
Number of samples | 19 | 142 |
Cluster Labels | DEL PEAK 5(2Q33.3) MUTATED | DEL PEAK 5(2Q33.3) WILD-TYPE |
---|---|---|
Number of samples | 16 | 145 |
Cluster Labels | DEL PEAK 6(2Q37.2) MUTATED | DEL PEAK 6(2Q37.2) WILD-TYPE |
---|---|---|
Number of samples | 22 | 139 |
Cluster Labels | DEL PEAK 7(3P26.1) MUTATED | DEL PEAK 7(3P26.1) WILD-TYPE |
---|---|---|
Number of samples | 38 | 123 |
Cluster Labels | DEL PEAK 8(3P14.2) MUTATED | DEL PEAK 8(3P14.2) WILD-TYPE |
---|---|---|
Number of samples | 51 | 110 |
Cluster Labels | DEL PEAK 9(3Q26.31) MUTATED | DEL PEAK 9(3Q26.31) WILD-TYPE |
---|---|---|
Number of samples | 13 | 148 |
Cluster Labels | DEL PEAK 10(4P16.3) MUTATED | DEL PEAK 10(4P16.3) WILD-TYPE |
---|---|---|
Number of samples | 49 | 112 |
Cluster Labels | DEL PEAK 11(4Q22.1) MUTATED | DEL PEAK 11(4Q22.1) WILD-TYPE |
---|---|---|
Number of samples | 60 | 101 |
Cluster Labels | DEL PEAK 12(4Q35.1) MUTATED | DEL PEAK 12(4Q35.1) WILD-TYPE |
---|---|---|
Number of samples | 59 | 102 |
Cluster Labels | DEL PEAK 13(5Q11.2) MUTATED | DEL PEAK 13(5Q11.2) WILD-TYPE |
---|---|---|
Number of samples | 45 | 116 |
Cluster Labels | DEL PEAK 14(6P25.3) MUTATED | DEL PEAK 14(6P25.3) WILD-TYPE |
---|---|---|
Number of samples | 34 | 127 |
Cluster Labels | DEL PEAK 15(6Q26) MUTATED | DEL PEAK 15(6Q26) WILD-TYPE |
---|---|---|
Number of samples | 35 | 126 |
Cluster Labels | DEL PEAK 16(6Q27) MUTATED | DEL PEAK 16(6Q27) WILD-TYPE |
---|---|---|
Number of samples | 34 | 127 |
Cluster Labels | DEL PEAK 17(7Q31.1) MUTATED | DEL PEAK 17(7Q31.1) WILD-TYPE |
---|---|---|
Number of samples | 19 | 142 |
Cluster Labels | DEL PEAK 18(7Q36.3) MUTATED | DEL PEAK 18(7Q36.3) WILD-TYPE |
---|---|---|
Number of samples | 29 | 132 |
Cluster Labels | DEL PEAK 19(8P23.2) MUTATED | DEL PEAK 19(8P23.2) WILD-TYPE |
---|---|---|
Number of samples | 40 | 121 |
Cluster Labels | DEL PEAK 20(9P23) MUTATED | DEL PEAK 20(9P23) WILD-TYPE |
---|---|---|
Number of samples | 63 | 98 |
Cluster Labels | DEL PEAK 21(9P21.3) MUTATED | DEL PEAK 21(9P21.3) WILD-TYPE |
---|---|---|
Number of samples | 59 | 102 |
Cluster Labels | DEL PEAK 22(9Q21.11) MUTATED | DEL PEAK 22(9Q21.11) WILD-TYPE |
---|---|---|
Number of samples | 31 | 130 |
Cluster Labels | DEL PEAK 23(10P14) MUTATED | DEL PEAK 23(10P14) WILD-TYPE |
---|---|---|
Number of samples | 21 | 140 |
Cluster Labels | DEL PEAK 24(10Q22.3) MUTATED | DEL PEAK 24(10Q22.3) WILD-TYPE |
---|---|---|
Number of samples | 24 | 137 |
Cluster Labels | DEL PEAK 25(10Q23.31) MUTATED | DEL PEAK 25(10Q23.31) WILD-TYPE |
---|---|---|
Number of samples | 37 | 124 |
Cluster Labels | DEL PEAK 26(11P15.5) MUTATED | DEL PEAK 26(11P15.5) WILD-TYPE |
---|---|---|
Number of samples | 37 | 124 |
Cluster Labels | DEL PEAK 27(11Q23.2) MUTATED | DEL PEAK 27(11Q23.2) WILD-TYPE |
---|---|---|
Number of samples | 34 | 127 |
Cluster Labels | DEL PEAK 28(12P13.2) MUTATED | DEL PEAK 28(12P13.2) WILD-TYPE |
---|---|---|
Number of samples | 24 | 137 |
Cluster Labels | DEL PEAK 29(14Q21.1) MUTATED | DEL PEAK 29(14Q21.1) WILD-TYPE |
---|---|---|
Number of samples | 36 | 125 |
Cluster Labels | DEL PEAK 30(14Q32.33) MUTATED | DEL PEAK 30(14Q32.33) WILD-TYPE |
---|---|---|
Number of samples | 40 | 121 |
Cluster Labels | DEL PEAK 31(15Q11.2) MUTATED | DEL PEAK 31(15Q11.2) WILD-TYPE |
---|---|---|
Number of samples | 39 | 122 |
Cluster Labels | DEL PEAK 32(15Q15.1) MUTATED | DEL PEAK 32(15Q15.1) WILD-TYPE |
---|---|---|
Number of samples | 40 | 121 |
Cluster Labels | DEL PEAK 33(16P13.3) MUTATED | DEL PEAK 33(16P13.3) WILD-TYPE |
---|---|---|
Number of samples | 20 | 141 |
Cluster Labels | DEL PEAK 34(16Q23.1) MUTATED | DEL PEAK 34(16Q23.1) WILD-TYPE |
---|---|---|
Number of samples | 56 | 105 |
Cluster Labels | DEL PEAK 35(17P12) MUTATED | DEL PEAK 35(17P12) WILD-TYPE |
---|---|---|
Number of samples | 55 | 106 |
Cluster Labels | DEL PEAK 36(17Q24.3) MUTATED | DEL PEAK 36(17Q24.3) WILD-TYPE |
---|---|---|
Number of samples | 23 | 138 |
Cluster Labels | DEL PEAK 37(18Q21.2) MUTATED | DEL PEAK 37(18Q21.2) WILD-TYPE |
---|---|---|
Number of samples | 63 | 98 |
Cluster Labels | DEL PEAK 38(18Q22.3) MUTATED | DEL PEAK 38(18Q22.3) WILD-TYPE |
---|---|---|
Number of samples | 59 | 102 |
Cluster Labels | DEL PEAK 39(19P13.3) MUTATED | DEL PEAK 39(19P13.3) WILD-TYPE |
---|---|---|
Number of samples | 49 | 112 |
Cluster Labels | DEL PEAK 40(19Q13.11) MUTATED | DEL PEAK 40(19Q13.11) WILD-TYPE |
---|---|---|
Number of samples | 21 | 140 |
Cluster Labels | DEL PEAK 41(20P12.1) MUTATED | DEL PEAK 41(20P12.1) WILD-TYPE |
---|---|---|
Number of samples | 24 | 137 |
Cluster Labels | DEL PEAK 42(21Q11.2) MUTATED | DEL PEAK 42(21Q11.2) WILD-TYPE |
---|---|---|
Number of samples | 50 | 111 |
Cluster Labels | DEL PEAK 43(22Q13.31) MUTATED | DEL PEAK 43(22Q13.31) WILD-TYPE |
---|---|---|
Number of samples | 49 | 112 |
Cluster Labels | DEL PEAK 44(XP22.2) MUTATED | DEL PEAK 44(XP22.2) WILD-TYPE |
---|---|---|
Number of samples | 27 | 134 |
Cluster Labels | DEL PEAK 45(XP21.1) MUTATED | DEL PEAK 45(XP21.1) WILD-TYPE |
---|---|---|
Number of samples | 27 | 134 |
Cluster Labels | DEL PEAK 46(XQ21.33) MUTATED | DEL PEAK 46(XQ21.33) WILD-TYPE |
---|---|---|
Number of samples | 21 | 140 |
-
Cluster data file = all_lesions.conf_99.cnv.cluster.txt
-
Clinical data file = STAD-TP.clin.merged.picked.txt
-
Number of patients = 161
-
Number of clustering approaches = 72
-
Number of selected clinical features = 9
-
Exclude small clusters that include fewer than K patients, K = 3
For survival clinical features, the Kaplan-Meier survival curves of tumors with and without gene mutations were plotted and the statistical significance P values were estimated by logrank test (Bland and Altman 2004) using the 'survdiff' function in R
For continuous numerical clinical features, two-tailed Student's t test with unequal variance (Lehmann and Romano 2005) was applied to compare the clinical values between two tumor subtypes using 't.test' function in R
For binary clinical features, two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multi-class clinical features (nominal or ordinal), Chi-square tests (Greenwood and Nikulin 1996) were used to estimate the P values using the 'chisq.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
This is an experimental feature. The full results of the analysis summarized in this report can be downloaded from the TCGA Data Coordination Center.