This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and subtypes.
Testing the association between copy number variation 79 arm-level results and 10 molecular subtypes across 492 patients, 231 significant findings detected with Q value < 0.25.
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1q gain cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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2p gain cnv correlated to 'CN_CNMF'.
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2q gain cnv correlated to 'CN_CNMF'.
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3p gain cnv correlated to 'CN_CNMF'.
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3q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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5p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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6p gain cnv correlated to 'CN_CNMF'.
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6q gain cnv correlated to 'CN_CNMF'.
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7p gain cnv correlated to 'CN_CNMF'.
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7q gain cnv correlated to 'CN_CNMF'.
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8p gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
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8q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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10q gain cnv correlated to 'CN_CNMF'.
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12p gain cnv correlated to 'CN_CNMF'.
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12q gain cnv correlated to 'CN_CNMF'.
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13q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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14q gain cnv correlated to 'CN_CNMF'.
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17p gain cnv correlated to 'CN_CNMF'.
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17q gain cnv correlated to 'RPPA_CHIERARCHICAL'.
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18p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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18q gain cnv correlated to 'CN_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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19p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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19q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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20p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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20q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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21q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
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22q gain cnv correlated to 'METHLYATION_CNMF'.
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Xq gain cnv correlated to 'CN_CNMF'.
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1p loss cnv correlated to 'CN_CNMF'.
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3p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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3q loss cnv correlated to 'CN_CNMF'.
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4p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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4q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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5p loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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5q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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6q loss cnv correlated to 'CN_CNMF'.
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7p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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7q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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8p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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8q loss cnv correlated to 'CN_CNMF'.
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9p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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9q loss cnv correlated to 'MRNA_CHIERARCHICAL', 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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10p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
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10q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
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11p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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11q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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12p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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12q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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13q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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14q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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15q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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16p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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16q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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17p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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17q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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18p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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18q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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19p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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19q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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20p loss cnv correlated to 'CN_CNMF'.
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21q loss cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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22q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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Xq loss cnv correlated to 'CN_CNMF'.
Molecular subtypes |
MRNA CNMF |
MRNA CHIERARCHICAL |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
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nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Chi-square test | Fisher's exact test | Chi-square test | Chi-square test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Chi-square test | |
9q loss | 93 (19%) | 399 |
0.0015 (0.648) |
0.000248 (0.117) |
1.53e-37 (1.04e-34) |
5.86e-07 (0.000323) |
0.000334 (0.156) |
0.846 (1.00) |
2.56e-13 (1.64e-10) |
2.82e-16 (1.85e-13) |
1.43e-11 (8.99e-09) |
1.4e-07 (7.88e-05) |
3p loss | 31 (6%) | 461 |
1.34e-14 (8.7e-12) |
0.000141 (0.0681) |
0.000363 (0.168) |
0.0141 (1.00) |
1.79e-07 (1e-04) |
8.63e-08 (4.93e-05) |
5.44e-05 (0.0271) |
0.000111 (0.0543) |
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17p loss | 105 (21%) | 387 |
0.00686 (1.00) |
0.00173 (0.734) |
8.66e-53 (5.93e-50) |
8.14e-13 (5.2e-10) |
4.51e-05 (0.0227) |
0.119 (1.00) |
1.6e-20 (1.07e-17) |
2.15e-21 (1.44e-18) |
2.01e-16 (1.32e-13) |
1.42e-11 (8.92e-09) |
1q gain | 138 (28%) | 354 |
0.111 (1.00) |
0.637 (1.00) |
3.04e-07 (0.000169) |
0.00534 (1.00) |
0.00236 (0.99) |
0.000427 (0.197) |
3.31e-06 (0.00177) |
9.23e-07 (0.000505) |
2.94e-09 (1.76e-06) |
7.8e-06 (0.0041) |
5p gain | 32 (7%) | 460 |
0.86 (1.00) |
0.623 (1.00) |
3.01e-09 (1.8e-06) |
0.000136 (0.0656) |
0.0284 (1.00) |
0.879 (1.00) |
3.95e-06 (0.0021) |
0.00042 (0.193) |
1.7e-05 (0.0088) |
1.04e-05 (0.00541) |
18p gain | 37 (8%) | 455 |
0.0591 (1.00) |
0.133 (1.00) |
4.94e-14 (3.2e-11) |
6.64e-05 (0.0331) |
0.0877 (1.00) |
0.0514 (1.00) |
3.34e-05 (0.017) |
7.28e-07 (0.000401) |
1.4e-10 (8.59e-08) |
2.36e-09 (1.42e-06) |
4p loss | 66 (13%) | 426 |
0.0729 (1.00) |
0.0133 (1.00) |
4.79e-25 (3.23e-22) |
7.08e-11 (4.37e-08) |
0.0295 (1.00) |
0.21 (1.00) |
2.45e-09 (1.47e-06) |
1.29e-07 (7.33e-05) |
1.53e-13 (9.9e-11) |
4.29e-09 (2.55e-06) |
4q loss | 64 (13%) | 428 |
0.683 (1.00) |
0.371 (1.00) |
1.36e-26 (9.2e-24) |
2.66e-11 (1.66e-08) |
0.124 (1.00) |
0.0751 (1.00) |
2.64e-08 (1.54e-05) |
2.45e-08 (1.43e-05) |
1.23e-10 (7.54e-08) |
1.94e-08 (1.13e-05) |
5q loss | 45 (9%) | 447 |
0.0729 (1.00) |
0.0133 (1.00) |
1.18e-18 (7.83e-16) |
7.26e-09 (4.29e-06) |
0.00487 (1.00) |
0.0359 (1.00) |
6.28e-08 (3.61e-05) |
2.96e-08 (1.72e-05) |
2.58e-07 (0.000145) |
1.38e-07 (7.78e-05) |
8p loss | 53 (11%) | 439 |
0.0191 (1.00) |
0.00403 (1.00) |
4.01e-24 (2.7e-21) |
1.08e-11 (6.8e-09) |
0.0188 (1.00) |
0.481 (1.00) |
4.84e-12 (3.06e-09) |
6.9e-10 (4.2e-07) |
2.87e-14 (1.87e-11) |
5.45e-14 (3.53e-11) |
9p loss | 76 (15%) | 416 |
0.0227 (1.00) |
0.00379 (1.00) |
2.63e-29 (1.78e-26) |
2.34e-06 (0.00126) |
0.000552 (0.25) |
0.447 (1.00) |
2.12e-12 (1.35e-09) |
7.6e-15 (4.97e-12) |
5.74e-09 (3.4e-06) |
5.52e-09 (3.28e-06) |
11p loss | 53 (11%) | 439 |
1.44e-21 (9.69e-19) |
7.44e-07 (0.000409) |
0.275 (1.00) |
0.459 (1.00) |
4.46e-08 (2.58e-05) |
2.6e-07 (0.000145) |
5.58e-10 (3.4e-07) |
2.14e-06 (0.00116) |
||
11q loss | 45 (9%) | 447 |
1.15e-15 (7.54e-13) |
7.53e-05 (0.0372) |
0.713 (1.00) |
0.37 (1.00) |
0.000397 (0.183) |
8.07e-06 (0.00423) |
1.74e-07 (9.82e-05) |
7.76e-06 (0.00409) |
||
14q loss | 42 (9%) | 450 |
0.0191 (1.00) |
0.00403 (1.00) |
8.94e-17 (5.89e-14) |
1.48e-09 (8.9e-07) |
0.0683 (1.00) |
0.0117 (1.00) |
3.38e-08 (1.96e-05) |
1.95e-07 (0.000109) |
4.32e-07 (0.000239) |
9.94e-09 (5.87e-06) |
15q loss | 81 (16%) | 411 |
0.00677 (1.00) |
0.00103 (0.45) |
4.68e-35 (3.18e-32) |
1.61e-13 (1.03e-10) |
0.00151 (0.648) |
0.00914 (1.00) |
7.92e-10 (4.8e-07) |
1.07e-10 (6.58e-08) |
2.16e-15 (1.41e-12) |
2.73e-12 (1.74e-09) |
16p loss | 69 (14%) | 423 |
0.0191 (1.00) |
0.00403 (1.00) |
2.82e-31 (1.91e-28) |
2.77e-09 (1.66e-06) |
0.293 (1.00) |
0.844 (1.00) |
7.52e-10 (4.56e-07) |
1.47e-09 (8.88e-07) |
4.3e-09 (2.55e-06) |
4.77e-11 (2.96e-08) |
16q loss | 110 (22%) | 382 |
0.00686 (1.00) |
0.00173 (0.734) |
5.94e-40 (4.05e-37) |
2.86e-11 (1.78e-08) |
0.4 (1.00) |
0.766 (1.00) |
1.01e-11 (6.36e-09) |
2.34e-10 (1.43e-07) |
8.41e-13 (5.37e-10) |
1.53e-13 (9.9e-11) |
17q loss | 68 (14%) | 424 |
0.0191 (1.00) |
0.00403 (1.00) |
1.48e-29 (1e-26) |
3.41e-05 (0.0173) |
0.0246 (1.00) |
0.197 (1.00) |
4.28e-09 (2.55e-06) |
1.95e-11 (1.22e-08) |
2.87e-07 (0.00016) |
4.27e-05 (0.0215) |
18q loss | 49 (10%) | 443 |
9.75e-18 (6.43e-15) |
1.98e-06 (0.00107) |
0.414 (1.00) |
0.464 (1.00) |
3.87e-06 (0.00207) |
5.65e-07 (0.000312) |
8.82e-07 (0.000483) |
3.01e-06 (0.00161) |
||
19p loss | 34 (7%) | 458 |
4.63e-12 (2.94e-09) |
1.07e-07 (6.07e-05) |
0.318 (1.00) |
0.618 (1.00) |
1.84e-05 (0.00951) |
7.84e-06 (0.00411) |
5.72e-06 (0.00302) |
4.34e-06 (0.0023) |
||
22q loss | 87 (18%) | 405 |
0.0191 (1.00) |
0.00403 (1.00) |
1.41e-36 (9.58e-34) |
4.23e-08 (2.45e-05) |
0.0173 (1.00) |
0.772 (1.00) |
4.88e-11 (3.02e-08) |
3.29e-14 (2.14e-11) |
3.2e-10 (1.95e-07) |
5.61e-08 (3.23e-05) |
3q gain | 50 (10%) | 442 |
0.176 (1.00) |
0.0543 (1.00) |
3.41e-22 (2.29e-19) |
2.49e-05 (0.0127) |
0.412 (1.00) |
0.221 (1.00) |
1.19e-06 (0.000649) |
5.14e-05 (0.0257) |
0.00125 (0.545) |
1e-06 (0.000547) |
19q gain | 28 (6%) | 464 |
4.28e-13 (2.74e-10) |
0.00147 (0.635) |
0.0834 (1.00) |
0.085 (1.00) |
4.73e-06 (0.00251) |
1.59e-06 (0.000866) |
2.72e-06 (0.00146) |
0.000231 (0.109) |
||
20p gain | 65 (13%) | 427 |
0.176 (1.00) |
0.0543 (1.00) |
2.28e-18 (1.51e-15) |
3.47e-05 (0.0176) |
0.274 (1.00) |
0.693 (1.00) |
9.04e-05 (0.0445) |
0.0119 (1.00) |
4.18e-08 (2.42e-05) |
8.43e-08 (4.83e-05) |
20q gain | 78 (16%) | 414 |
0.0591 (1.00) |
0.0151 (1.00) |
3.62e-24 (2.44e-21) |
8.6e-08 (4.92e-05) |
0.171 (1.00) |
0.456 (1.00) |
1.75e-06 (0.000946) |
0.000621 (0.28) |
2e-11 (1.25e-08) |
2.81e-11 (1.76e-08) |
7q loss | 27 (5%) | 465 |
4.91e-14 (3.19e-11) |
0.00018 (0.0859) |
0.18 (1.00) |
0.385 (1.00) |
1.32e-07 (7.48e-05) |
1.59e-06 (0.000866) |
0.00154 (0.658) |
0.000172 (0.0822) |
||
12p loss | 25 (5%) | 467 |
3.86e-11 (2.41e-08) |
0.000192 (0.0914) |
0.00604 (1.00) |
0.328 (1.00) |
3.62e-05 (0.0183) |
0.0057 (1.00) |
1.63e-08 (9.57e-06) |
8.92e-06 (0.00465) |
||
13q loss | 60 (12%) | 432 |
0.683 (1.00) |
0.371 (1.00) |
2.43e-18 (1.61e-15) |
0.000113 (0.0548) |
0.0804 (1.00) |
0.211 (1.00) |
0.000395 (0.183) |
3.89e-06 (0.00207) |
8.53e-05 (0.0421) |
0.00492 (1.00) |
13q gain | 20 (4%) | 472 |
9.55e-08 (5.44e-05) |
0.00556 (1.00) |
0.701 (1.00) |
0.685 (1.00) |
7.14e-05 (0.0353) |
0.000462 (0.212) |
0.00182 (0.764) |
0.000434 (0.199) |
||
19p gain | 31 (6%) | 461 |
0.0591 (1.00) |
0.0151 (1.00) |
2.4e-13 (1.54e-10) |
0.00429 (1.00) |
0.506 (1.00) |
0.431 (1.00) |
4.73e-06 (0.00251) |
1.84e-05 (0.00951) |
1.78e-05 (0.0092) |
0.00131 (0.571) |
10p loss | 23 (5%) | 469 |
0.176 (1.00) |
0.0543 (1.00) |
4e-11 (2.49e-08) |
0.000334 (0.156) |
0.451 (1.00) |
0.466 (1.00) |
0.000469 (0.214) |
0.0016 (0.68) |
2.61e-06 (0.0014) |
0.00672 (1.00) |
10q loss | 24 (5%) | 468 |
2.94e-10 (1.8e-07) |
0.000192 (0.0914) |
0.424 (1.00) |
0.71 (1.00) |
0.000469 (0.214) |
0.0057 (1.00) |
7.02e-05 (0.0348) |
0.00942 (1.00) |
||
12q loss | 18 (4%) | 474 |
1.23e-09 (7.43e-07) |
0.0001 (0.0491) |
0.0435 (1.00) |
0.312 (1.00) |
0.00106 (0.461) |
0.0067 (1.00) |
5.08e-07 (0.000281) |
0.000181 (0.0864) |
||
18p loss | 36 (7%) | 456 |
3.15e-12 (2e-09) |
2.09e-05 (0.0108) |
0.129 (1.00) |
0.649 (1.00) |
0.00066 (0.297) |
0.000172 (0.0822) |
0.0035 (1.00) |
0.000131 (0.0634) |
||
8q gain | 118 (24%) | 374 |
0.00461 (1.00) |
0.0424 (1.00) |
1.65e-21 (1.11e-18) |
0.368 (1.00) |
0.00159 (0.676) |
0.449 (1.00) |
0.00591 (1.00) |
0.000299 (0.14) |
0.00298 (1.00) |
1.37e-07 (7.78e-05) |
18q gain | 20 (4%) | 472 |
0.176 (1.00) |
0.0543 (1.00) |
8.26e-06 (0.00432) |
0.00562 (1.00) |
0.0173 (1.00) |
0.00565 (1.00) |
1.67e-05 (0.00869) |
4.63e-05 (0.0232) |
||
21q gain | 25 (5%) | 467 |
1.13e-08 (6.68e-06) |
0.0794 (1.00) |
0.222 (1.00) |
0.677 (1.00) |
0.000204 (0.0965) |
0.0095 (1.00) |
0.000123 (0.0594) |
0.00718 (1.00) |
||
7p loss | 29 (6%) | 463 |
0.176 (1.00) |
0.0543 (1.00) |
9.88e-10 (5.98e-07) |
0.00656 (1.00) |
0.181 (1.00) |
0.714 (1.00) |
0.000162 (0.0777) |
2.27e-05 (0.0116) |
0.00805 (1.00) |
0.0111 (1.00) |
19q loss | 28 (6%) | 464 |
1.79e-08 (1.05e-05) |
4.65e-05 (0.0233) |
0.713 (1.00) |
0.958 (1.00) |
0.000719 (0.321) |
0.00283 (1.00) |
0.00142 (0.616) |
0.000499 (0.227) |
||
8p gain | 86 (17%) | 406 |
0.395 (1.00) |
1 (1.00) |
7.48e-18 (4.95e-15) |
0.913 (1.00) |
0.263 (1.00) |
0.632 (1.00) |
0.474 (1.00) |
0.434 (1.00) |
0.48 (1.00) |
0.000107 (0.0524) |
5p loss | 27 (5%) | 465 |
0.352 (1.00) |
0.133 (1.00) |
1.16e-10 (7.15e-08) |
0.000334 (0.156) |
0.165 (1.00) |
0.144 (1.00) |
0.000782 (0.347) |
0.000672 (0.302) |
0.00154 (0.658) |
0.0104 (1.00) |
21q loss | 32 (7%) | 460 |
0.0591 (1.00) |
0.0151 (1.00) |
6.47e-08 (3.72e-05) |
0.00252 (1.00) |
0.0115 (1.00) |
0.638 (1.00) |
0.000148 (0.0713) |
0.00136 (0.591) |
0.00177 (0.749) |
0.00357 (1.00) |
2p gain | 51 (10%) | 441 |
0.233 (1.00) |
0.298 (1.00) |
5.41e-11 (3.34e-08) |
0.0588 (1.00) |
0.309 (1.00) |
0.762 (1.00) |
0.238 (1.00) |
0.434 (1.00) |
0.0215 (1.00) |
0.0292 (1.00) |
2q gain | 40 (8%) | 452 |
0.518 (1.00) |
0.769 (1.00) |
4.83e-11 (2.99e-08) |
0.175 (1.00) |
0.127 (1.00) |
0.407 (1.00) |
0.3 (1.00) |
0.624 (1.00) |
0.0241 (1.00) |
0.0073 (1.00) |
3p gain | 28 (6%) | 464 |
4.15e-19 (2.76e-16) |
0.121 (1.00) |
0.632 (1.00) |
0.266 (1.00) |
0.0149 (1.00) |
0.0429 (1.00) |
0.879 (1.00) |
0.105 (1.00) |
||
6p gain | 38 (8%) | 454 |
0.43 (1.00) |
0.243 (1.00) |
1.52e-16 (1e-13) |
0.0347 (1.00) |
0.752 (1.00) |
0.761 (1.00) |
0.00665 (1.00) |
0.0075 (1.00) |
0.00696 (1.00) |
0.0144 (1.00) |
6q gain | 30 (6%) | 462 |
0.43 (1.00) |
0.243 (1.00) |
1.58e-13 (1.02e-10) |
0.331 (1.00) |
0.488 (1.00) |
0.883 (1.00) |
0.00839 (1.00) |
0.00793 (1.00) |
0.13 (1.00) |
0.282 (1.00) |
7p gain | 43 (9%) | 449 |
1 (1.00) |
0.867 (1.00) |
8.62e-19 (5.73e-16) |
0.0118 (1.00) |
0.751 (1.00) |
0.455 (1.00) |
1 (1.00) |
0.475 (1.00) |
0.43 (1.00) |
0.297 (1.00) |
7q gain | 43 (9%) | 449 |
0.944 (1.00) |
0.776 (1.00) |
2.4e-19 (1.6e-16) |
0.0244 (1.00) |
0.775 (1.00) |
0.327 (1.00) |
0.385 (1.00) |
0.0331 (1.00) |
0.734 (1.00) |
0.188 (1.00) |
10q gain | 79 (16%) | 413 |
0.0015 (0.648) |
0.0303 (1.00) |
9.34e-05 (0.0459) |
0.176 (1.00) |
0.291 (1.00) |
0.716 (1.00) |
0.0262 (1.00) |
0.256 (1.00) |
0.0192 (1.00) |
0.0085 (1.00) |
12p gain | 37 (8%) | 455 |
0.815 (1.00) |
0.825 (1.00) |
4.78e-08 (2.76e-05) |
0.00909 (1.00) |
0.993 (1.00) |
0.219 (1.00) |
0.0455 (1.00) |
0.0906 (1.00) |
0.0263 (1.00) |
0.0135 (1.00) |
12q gain | 28 (6%) | 464 |
0.815 (1.00) |
0.825 (1.00) |
3.68e-07 (0.000204) |
0.121 (1.00) |
0.868 (1.00) |
0.0602 (1.00) |
0.0811 (1.00) |
0.227 (1.00) |
0.192 (1.00) |
0.123 (1.00) |
14q gain | 20 (4%) | 472 |
1 (1.00) |
1 (1.00) |
2.16e-05 (0.0111) |
0.227 (1.00) |
0.365 (1.00) |
0.636 (1.00) |
0.401 (1.00) |
0.0737 (1.00) |
0.0457 (1.00) |
0.199 (1.00) |
17p gain | 7 (1%) | 485 |
2.6e-05 (0.0133) |
0.244 (1.00) |
0.316 (1.00) |
0.315 (1.00) |
0.186 (1.00) |
0.0433 (1.00) |
||||
17q gain | 13 (3%) | 479 |
0.000727 (0.324) |
0.00357 (1.00) |
0.071 (1.00) |
6.64e-05 (0.0331) |
0.0276 (1.00) |
0.284 (1.00) |
0.0726 (1.00) |
0.0243 (1.00) |
||
22q gain | 9 (2%) | 483 |
0.00473 (1.00) |
0.000537 (0.244) |
0.115 (1.00) |
0.361 (1.00) |
0.000989 (0.434) |
0.00518 (1.00) |
||||
Xq gain | 12 (2%) | 480 |
0.000257 (0.121) |
0.322 (1.00) |
0.157 (1.00) |
0.447 (1.00) |
0.00652 (1.00) |
0.128 (1.00) |
||||
1p loss | 13 (3%) | 479 |
1.82e-08 (1.07e-05) |
0.000955 (0.421) |
0.0403 (1.00) |
0.0884 (1.00) |
0.00974 (1.00) |
0.00833 (1.00) |
||||
3q loss | 12 (2%) | 480 |
4.31e-05 (0.0217) |
0.0584 (1.00) |
0.0201 (1.00) |
0.333 (1.00) |
0.00479 (1.00) |
0.00274 (1.00) |
0.0226 (1.00) |
0.297 (1.00) |
||
6q loss | 12 (2%) | 480 |
0.683 (1.00) |
0.371 (1.00) |
0.000236 (0.111) |
0.0354 (1.00) |
0.828 (1.00) |
0.386 (1.00) |
0.016 (1.00) |
0.0384 (1.00) |
0.0476 (1.00) |
0.239 (1.00) |
8q loss | 12 (2%) | 480 |
2.23e-05 (0.0114) |
0.000955 (0.421) |
0.0396 (1.00) |
0.154 (1.00) |
0.0018 (0.759) |
0.022 (1.00) |
||||
20p loss | 15 (3%) | 477 |
0.000122 (0.0594) |
0.107 (1.00) |
0.232 (1.00) |
0.516 (1.00) |
0.0368 (1.00) |
0.0465 (1.00) |
0.00265 (1.00) |
0.0402 (1.00) |
||
Xq loss | 18 (4%) | 474 |
2.97e-07 (0.000165) |
0.000569 (0.257) |
0.872 (1.00) |
0.791 (1.00) |
0.016 (1.00) |
0.0067 (1.00) |
0.000764 (0.34) |
0.0113 (1.00) |
||
1p gain | 21 (4%) | 471 |
0.683 (1.00) |
0.184 (1.00) |
0.035 (1.00) |
0.661 (1.00) |
0.0532 (1.00) |
0.589 (1.00) |
0.182 (1.00) |
0.29 (1.00) |
0.032 (1.00) |
0.043 (1.00) |
4p gain | 6 (1%) | 486 |
0.0039 (1.00) |
0.125 (1.00) |
0.0396 (1.00) |
0.154 (1.00) |
0.00912 (1.00) |
0.0132 (1.00) |
||||
5q gain | 9 (2%) | 483 |
0.00286 (1.00) |
0.423 (1.00) |
0.0679 (1.00) |
0.286 (1.00) |
0.0314 (1.00) |
0.0467 (1.00) |
||||
9p gain | 14 (3%) | 478 |
0.0484 (1.00) |
0.0786 (1.00) |
0.822 (1.00) |
0.0787 (1.00) |
0.0432 (1.00) |
0.119 (1.00) |
||||
9q gain | 4 (1%) | 488 |
0.352 (1.00) |
0.363 (1.00) |
0.781 (1.00) |
0.361 (1.00) |
0.312 (1.00) |
0.173 (1.00) |
||||
10p gain | 87 (18%) | 405 |
0.00355 (1.00) |
0.064 (1.00) |
0.0007 (0.313) |
0.204 (1.00) |
0.266 (1.00) |
0.544 (1.00) |
0.0155 (1.00) |
0.255 (1.00) |
0.127 (1.00) |
0.0173 (1.00) |
11p gain | 8 (2%) | 484 |
0.176 (1.00) |
0.0543 (1.00) |
0.0099 (1.00) |
0.0373 (1.00) |
0.104 (1.00) |
0.222 (1.00) |
0.157 (1.00) |
0.447 (1.00) |
0.91 (1.00) |
0.227 (1.00) |
11q gain | 8 (2%) | 484 |
0.0111 (1.00) |
0.462 (1.00) |
0.104 (1.00) |
0.0284 (1.00) |
0.194 (1.00) |
0.396 (1.00) |
0.67 (1.00) |
0.398 (1.00) |
||
15q gain | 6 (1%) | 486 |
0.00416 (1.00) |
0.846 (1.00) |
0.828 (1.00) |
0.699 (1.00) |
1 (1.00) |
0.902 (1.00) |
||||
16p gain | 12 (2%) | 480 |
0.000794 (0.352) |
0.0313 (1.00) |
0.232 (1.00) |
0.914 (1.00) |
0.0679 (1.00) |
0.0787 (1.00) |
0.0609 (1.00) |
0.234 (1.00) |
||
16q gain | 4 (1%) | 488 |
0.046 (1.00) |
1 (1.00) |
1 (1.00) |
0.92 (1.00) |
||||||
1q loss | 4 (1%) | 488 |
0.0365 (1.00) |
0.0574 (1.00) |
0.115 (1.00) |
0.361 (1.00) |
0.0417 (1.00) |
0.243 (1.00) |
||||
2p loss | 6 (1%) | 486 |
0.019 (1.00) |
0.518 (1.00) |
0.157 (1.00) |
0.0878 (1.00) |
0.775 (1.00) |
0.0244 (1.00) |
||||
2q loss | 8 (2%) | 484 |
0.00637 (1.00) |
0.199 (1.00) |
0.157 (1.00) |
0.0878 (1.00) |
0.452 (1.00) |
0.0458 (1.00) |
||||
6p loss | 10 (2%) | 482 |
0.683 (1.00) |
0.371 (1.00) |
0.000862 (0.381) |
0.0962 (1.00) |
0.828 (1.00) |
0.386 (1.00) |
0.194 (1.00) |
0.249 (1.00) |
0.0309 (1.00) |
0.0461 (1.00) |
20q loss | 7 (1%) | 485 |
0.0106 (1.00) |
0.054 (1.00) |
0.391 (1.00) |
0.474 (1.00) |
0.0943 (1.00) |
0.0396 (1.00) |
P value = 3.04e-07 (Chi-square test), Q value = 0.00017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
1Q GAIN MUTATED | 85 | 18 | 21 | 8 | 6 |
1Q GAIN WILD-TYPE | 205 | 22 | 118 | 9 | 0 |
P value = 0.000427 (Chi-square test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 7 | 32 | 39 | 37 | 55 | 24 |
1Q GAIN MUTATED | 5 | 6 | 14 | 5 | 26 | 4 |
1Q GAIN WILD-TYPE | 2 | 26 | 25 | 32 | 29 | 20 |
P value = 3.31e-06 (Fisher's exact test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
1Q GAIN MUTATED | 24 | 26 | 51 |
1Q GAIN WILD-TYPE | 118 | 81 | 62 |
P value = 9.23e-07 (Fisher's exact test), Q value = 0.00051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
1Q GAIN MUTATED | 26 | 24 | 31 | 20 |
1Q GAIN WILD-TYPE | 39 | 68 | 34 | 120 |
P value = 2.94e-09 (Fisher's exact test), Q value = 1.8e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
1Q GAIN MUTATED | 33 | 35 | 67 |
1Q GAIN WILD-TYPE | 161 | 111 | 72 |
P value = 7.8e-06 (Chi-square test), Q value = 0.0041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
1Q GAIN MUTATED | 27 | 26 | 33 | 3 | 9 | 37 |
1Q GAIN WILD-TYPE | 29 | 116 | 41 | 20 | 30 | 108 |
P value = 5.41e-11 (Chi-square test), Q value = 3.3e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
2P GAIN MUTATED | 9 | 14 | 22 | 5 | 1 |
2P GAIN WILD-TYPE | 281 | 26 | 117 | 12 | 5 |
P value = 4.83e-11 (Chi-square test), Q value = 3e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
2Q GAIN MUTATED | 6 | 13 | 16 | 4 | 1 |
2Q GAIN WILD-TYPE | 284 | 27 | 123 | 13 | 5 |
P value = 4.15e-19 (Chi-square test), Q value = 2.8e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
3P GAIN MUTATED | 1 | 4 | 13 | 9 | 1 |
3P GAIN WILD-TYPE | 289 | 36 | 126 | 8 | 5 |
P value = 3.41e-22 (Chi-square test), Q value = 2.3e-19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
3Q GAIN MUTATED | 2 | 5 | 31 | 11 | 1 |
3Q GAIN WILD-TYPE | 288 | 35 | 108 | 6 | 5 |
P value = 2.49e-05 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
3Q GAIN MUTATED | 29 | 6 | 6 |
3Q GAIN WILD-TYPE | 114 | 79 | 143 |
P value = 1.19e-06 (Fisher's exact test), Q value = 0.00065
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
3Q GAIN MUTATED | 26 | 6 | 1 |
3Q GAIN WILD-TYPE | 116 | 101 | 112 |
P value = 5.14e-05 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
3Q GAIN MUTATED | 0 | 3 | 7 | 23 |
3Q GAIN WILD-TYPE | 65 | 89 | 58 | 117 |
P value = 1e-06 (Chi-square test), Q value = 0.00055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
3Q GAIN MUTATED | 1 | 30 | 1 | 5 | 4 | 8 |
3Q GAIN WILD-TYPE | 55 | 112 | 73 | 18 | 35 | 137 |
P value = 3.01e-09 (Chi-square test), Q value = 1.8e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
5P GAIN MUTATED | 3 | 2 | 25 | 1 | 1 |
5P GAIN WILD-TYPE | 287 | 38 | 114 | 16 | 5 |
P value = 0.000136 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
5P GAIN MUTATED | 20 | 3 | 3 |
5P GAIN WILD-TYPE | 123 | 82 | 146 |
P value = 3.95e-06 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
5P GAIN MUTATED | 19 | 0 | 3 |
5P GAIN WILD-TYPE | 123 | 107 | 110 |
P value = 0.00042 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
5P GAIN MUTATED | 2 | 0 | 3 | 17 |
5P GAIN WILD-TYPE | 63 | 92 | 62 | 123 |
P value = 1.7e-05 (Fisher's exact test), Q value = 0.0088
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
5P GAIN MUTATED | 24 | 1 | 6 |
5P GAIN WILD-TYPE | 170 | 145 | 133 |
P value = 1.04e-05 (Chi-square test), Q value = 0.0054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
5P GAIN MUTATED | 1 | 21 | 2 | 1 | 5 | 1 |
5P GAIN WILD-TYPE | 55 | 121 | 72 | 22 | 34 | 144 |
P value = 1.52e-16 (Chi-square test), Q value = 1e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
6P GAIN MUTATED | 1 | 3 | 25 | 8 | 1 |
6P GAIN WILD-TYPE | 289 | 37 | 114 | 9 | 5 |
P value = 1.58e-13 (Chi-square test), Q value = 1e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
6Q GAIN MUTATED | 1 | 3 | 18 | 7 | 1 |
6Q GAIN WILD-TYPE | 289 | 37 | 121 | 10 | 5 |
P value = 8.62e-19 (Chi-square test), Q value = 5.7e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
7P GAIN MUTATED | 5 | 17 | 14 | 6 | 1 |
7P GAIN WILD-TYPE | 285 | 23 | 125 | 11 | 5 |
P value = 2.4e-19 (Chi-square test), Q value = 1.6e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
7Q GAIN MUTATED | 8 | 17 | 10 | 7 | 1 |
7Q GAIN WILD-TYPE | 282 | 23 | 129 | 10 | 5 |
P value = 7.48e-18 (Chi-square test), Q value = 4.9e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
8P GAIN MUTATED | 28 | 16 | 25 | 15 | 2 |
8P GAIN WILD-TYPE | 262 | 24 | 114 | 2 | 4 |
P value = 0.000107 (Chi-square test), Q value = 0.052
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
8P GAIN MUTATED | 5 | 27 | 8 | 12 | 9 | 23 |
8P GAIN WILD-TYPE | 51 | 115 | 66 | 11 | 30 | 122 |
P value = 1.65e-21 (Chi-square test), Q value = 1.1e-18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
8Q GAIN MUTATED | 29 | 19 | 51 | 16 | 3 |
8Q GAIN WILD-TYPE | 261 | 21 | 88 | 1 | 3 |
P value = 0.000299 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
8Q GAIN MUTATED | 10 | 12 | 9 | 47 |
8Q GAIN WILD-TYPE | 55 | 80 | 56 | 93 |
P value = 1.37e-07 (Chi-square test), Q value = 7.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
8Q GAIN MUTATED | 5 | 48 | 9 | 14 | 11 | 27 |
8Q GAIN WILD-TYPE | 51 | 94 | 65 | 9 | 28 | 118 |
P value = 9.34e-05 (Chi-square test), Q value = 0.046
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
10Q GAIN MUTATED | 44 | 12 | 13 | 7 | 3 |
10Q GAIN WILD-TYPE | 246 | 28 | 126 | 10 | 3 |
P value = 4.78e-08 (Chi-square test), Q value = 2.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
12P GAIN MUTATED | 7 | 7 | 19 | 1 | 3 |
12P GAIN WILD-TYPE | 283 | 33 | 120 | 16 | 3 |
P value = 3.68e-07 (Chi-square test), Q value = 2e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
12Q GAIN MUTATED | 7 | 6 | 11 | 1 | 3 |
12Q GAIN WILD-TYPE | 283 | 34 | 128 | 16 | 3 |
P value = 9.55e-08 (Chi-square test), Q value = 5.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
13Q GAIN MUTATED | 1 | 0 | 17 | 1 | 1 |
13Q GAIN WILD-TYPE | 289 | 40 | 122 | 16 | 5 |
P value = 7.14e-05 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
13Q GAIN MUTATED | 13 | 1 | 0 |
13Q GAIN WILD-TYPE | 129 | 106 | 113 |
P value = 0.000462 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
13Q GAIN MUTATED | 0 | 1 | 0 | 13 |
13Q GAIN WILD-TYPE | 65 | 91 | 65 | 127 |
P value = 0.000434 (Chi-square test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
13Q GAIN MUTATED | 1 | 15 | 0 | 0 | 2 | 2 |
13Q GAIN WILD-TYPE | 55 | 127 | 74 | 23 | 37 | 143 |
P value = 2.16e-05 (Chi-square test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
14Q GAIN MUTATED | 2 | 2 | 13 | 3 | 0 |
14Q GAIN WILD-TYPE | 288 | 38 | 126 | 14 | 6 |
P value = 2.6e-05 (Chi-square test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
17P GAIN MUTATED | 1 | 0 | 3 | 2 | 1 |
17P GAIN WILD-TYPE | 289 | 40 | 136 | 15 | 5 |
P value = 6.64e-05 (Chi-square test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 7 | 32 | 39 | 37 | 55 | 24 |
17Q GAIN MUTATED | 2 | 1 | 0 | 0 | 1 | 0 |
17Q GAIN WILD-TYPE | 5 | 31 | 39 | 37 | 54 | 24 |
P value = 4.94e-14 (Chi-square test), Q value = 3.2e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
18P GAIN MUTATED | 2 | 2 | 32 | 1 | 0 |
18P GAIN WILD-TYPE | 288 | 38 | 107 | 16 | 6 |
P value = 6.64e-05 (Fisher's exact test), Q value = 0.033
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
18P GAIN MUTATED | 20 | 8 | 2 |
18P GAIN WILD-TYPE | 123 | 77 | 147 |
P value = 3.34e-05 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
18P GAIN MUTATED | 18 | 2 | 1 |
18P GAIN WILD-TYPE | 124 | 105 | 112 |
P value = 7.28e-07 (Fisher's exact test), Q value = 4e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
18P GAIN MUTATED | 0 | 1 | 0 | 20 |
18P GAIN WILD-TYPE | 65 | 91 | 65 | 120 |
P value = 1.4e-10 (Fisher's exact test), Q value = 8.6e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
18P GAIN MUTATED | 33 | 1 | 2 |
18P GAIN WILD-TYPE | 161 | 145 | 137 |
P value = 2.36e-09 (Chi-square test), Q value = 1.4e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
18P GAIN MUTATED | 1 | 27 | 0 | 0 | 6 | 2 |
18P GAIN WILD-TYPE | 55 | 115 | 74 | 23 | 33 | 143 |
P value = 8.26e-06 (Chi-square test), Q value = 0.0043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
18Q GAIN MUTATED | 2 | 1 | 16 | 1 | 0 |
18Q GAIN WILD-TYPE | 288 | 39 | 123 | 16 | 6 |
P value = 1.67e-05 (Fisher's exact test), Q value = 0.0087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
18Q GAIN MUTATED | 17 | 0 | 2 |
18Q GAIN WILD-TYPE | 177 | 146 | 137 |
P value = 4.63e-05 (Chi-square test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
18Q GAIN MUTATED | 1 | 11 | 0 | 0 | 6 | 1 |
18Q GAIN WILD-TYPE | 55 | 131 | 74 | 23 | 33 | 144 |
P value = 2.4e-13 (Chi-square test), Q value = 1.5e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
19P GAIN MUTATED | 0 | 1 | 27 | 3 | 0 |
19P GAIN WILD-TYPE | 290 | 39 | 112 | 14 | 6 |
P value = 4.73e-06 (Fisher's exact test), Q value = 0.0025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
19P GAIN MUTATED | 16 | 1 | 0 |
19P GAIN WILD-TYPE | 126 | 106 | 113 |
P value = 1.84e-05 (Fisher's exact test), Q value = 0.0095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
19P GAIN MUTATED | 0 | 0 | 1 | 16 |
19P GAIN WILD-TYPE | 65 | 92 | 64 | 124 |
P value = 1.78e-05 (Fisher's exact test), Q value = 0.0092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
19P GAIN MUTATED | 25 | 3 | 3 |
19P GAIN WILD-TYPE | 169 | 143 | 136 |
P value = 4.28e-13 (Chi-square test), Q value = 2.7e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
19Q GAIN MUTATED | 0 | 0 | 25 | 3 | 0 |
19Q GAIN WILD-TYPE | 290 | 40 | 114 | 14 | 6 |
P value = 4.73e-06 (Fisher's exact test), Q value = 0.0025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
19Q GAIN MUTATED | 16 | 1 | 0 |
19Q GAIN WILD-TYPE | 126 | 106 | 113 |
P value = 1.59e-06 (Fisher's exact test), Q value = 0.00087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
19Q GAIN MUTATED | 0 | 0 | 0 | 17 |
19Q GAIN WILD-TYPE | 65 | 92 | 65 | 123 |
P value = 2.72e-06 (Fisher's exact test), Q value = 0.0015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
19Q GAIN MUTATED | 24 | 2 | 2 |
19Q GAIN WILD-TYPE | 170 | 144 | 137 |
P value = 0.000231 (Chi-square test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
19Q GAIN MUTATED | 2 | 19 | 0 | 1 | 3 | 3 |
19Q GAIN WILD-TYPE | 54 | 123 | 74 | 22 | 36 | 142 |
P value = 2.28e-18 (Chi-square test), Q value = 1.5e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
20P GAIN MUTATED | 4 | 13 | 43 | 3 | 2 |
20P GAIN WILD-TYPE | 286 | 27 | 96 | 14 | 4 |
P value = 3.47e-05 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
20P GAIN MUTATED | 37 | 9 | 11 |
20P GAIN WILD-TYPE | 106 | 76 | 138 |
P value = 9.04e-05 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
20P GAIN MUTATED | 27 | 5 | 5 |
20P GAIN WILD-TYPE | 115 | 102 | 108 |
P value = 4.18e-08 (Fisher's exact test), Q value = 2.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
20P GAIN MUTATED | 48 | 8 | 9 |
20P GAIN WILD-TYPE | 146 | 138 | 130 |
P value = 8.43e-08 (Chi-square test), Q value = 4.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
20P GAIN MUTATED | 3 | 40 | 6 | 1 | 7 | 8 |
20P GAIN WILD-TYPE | 53 | 102 | 68 | 22 | 32 | 137 |
P value = 3.62e-24 (Chi-square test), Q value = 2.4e-21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
20Q GAIN MUTATED | 4 | 15 | 54 | 3 | 2 |
20Q GAIN WILD-TYPE | 286 | 25 | 85 | 14 | 4 |
P value = 8.6e-08 (Fisher's exact test), Q value = 4.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
20Q GAIN MUTATED | 47 | 10 | 12 |
20Q GAIN WILD-TYPE | 96 | 75 | 137 |
P value = 1.75e-06 (Fisher's exact test), Q value = 0.00095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
20Q GAIN MUTATED | 32 | 5 | 5 |
20Q GAIN WILD-TYPE | 110 | 102 | 108 |
P value = 2e-11 (Fisher's exact test), Q value = 1.3e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
20Q GAIN MUTATED | 59 | 9 | 9 |
20Q GAIN WILD-TYPE | 135 | 137 | 130 |
P value = 2.81e-11 (Chi-square test), Q value = 1.8e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
20Q GAIN MUTATED | 3 | 49 | 6 | 1 | 9 | 9 |
20Q GAIN WILD-TYPE | 53 | 93 | 68 | 22 | 30 | 136 |
P value = 1.13e-08 (Chi-square test), Q value = 6.7e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
21Q GAIN MUTATED | 1 | 2 | 21 | 1 | 0 |
21Q GAIN WILD-TYPE | 289 | 38 | 118 | 16 | 6 |
P value = 0.000204 (Fisher's exact test), Q value = 0.097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
21Q GAIN MUTATED | 12 | 1 | 0 |
21Q GAIN WILD-TYPE | 130 | 106 | 113 |
P value = 0.000123 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
21Q GAIN MUTATED | 20 | 4 | 1 |
21Q GAIN WILD-TYPE | 174 | 142 | 138 |
P value = 0.000537 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
22Q GAIN MUTATED | 8 | 0 | 0 |
22Q GAIN WILD-TYPE | 135 | 85 | 149 |
P value = 0.000257 (Chi-square test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
XQ GAIN MUTATED | 0 | 1 | 10 | 1 | 0 |
XQ GAIN WILD-TYPE | 290 | 39 | 129 | 16 | 6 |
P value = 1.82e-08 (Chi-square test), Q value = 1.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
1P LOSS MUTATED | 0 | 4 | 7 | 0 | 2 |
1P LOSS WILD-TYPE | 290 | 36 | 132 | 17 | 4 |
P value = 1.34e-14 (Chi-square test), Q value = 8.7e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
3P LOSS MUTATED | 0 | 2 | 29 | 0 | 0 |
3P LOSS WILD-TYPE | 290 | 38 | 110 | 17 | 6 |
P value = 0.000141 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
3P LOSS MUTATED | 19 | 6 | 2 |
3P LOSS WILD-TYPE | 124 | 79 | 147 |
P value = 0.000363 (Chi-square test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 40 | 36 | 40 | 16 | 38 | 24 |
3P LOSS MUTATED | 1 | 7 | 0 | 0 | 0 | 1 |
3P LOSS WILD-TYPE | 39 | 29 | 40 | 16 | 38 | 23 |
P value = 1.79e-07 (Fisher's exact test), Q value = 1e-04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
3P LOSS MUTATED | 19 | 1 | 0 |
3P LOSS WILD-TYPE | 123 | 106 | 113 |
P value = 8.63e-08 (Fisher's exact test), Q value = 4.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
3P LOSS MUTATED | 0 | 0 | 0 | 20 |
3P LOSS WILD-TYPE | 65 | 92 | 65 | 120 |
P value = 5.44e-05 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
3P LOSS MUTATED | 23 | 2 | 4 |
3P LOSS WILD-TYPE | 171 | 144 | 135 |
P value = 0.000111 (Chi-square test), Q value = 0.054
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
3P LOSS MUTATED | 1 | 19 | 0 | 2 | 4 | 3 |
3P LOSS WILD-TYPE | 55 | 123 | 74 | 21 | 35 | 142 |
P value = 4.31e-05 (Chi-square test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
3Q LOSS MUTATED | 0 | 1 | 11 | 0 | 0 |
3Q LOSS WILD-TYPE | 290 | 39 | 128 | 17 | 6 |
P value = 4.79e-25 (Chi-square test), Q value = 3.2e-22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
4P LOSS MUTATED | 2 | 8 | 54 | 1 | 1 |
4P LOSS WILD-TYPE | 288 | 32 | 85 | 16 | 5 |
P value = 7.08e-11 (Fisher's exact test), Q value = 4.4e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
4P LOSS MUTATED | 41 | 15 | 3 |
4P LOSS WILD-TYPE | 102 | 70 | 146 |
P value = 2.45e-09 (Fisher's exact test), Q value = 1.5e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
4P LOSS MUTATED | 30 | 1 | 3 |
4P LOSS WILD-TYPE | 112 | 106 | 110 |
P value = 1.29e-07 (Fisher's exact test), Q value = 7.3e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
4P LOSS MUTATED | 2 | 1 | 2 | 29 |
4P LOSS WILD-TYPE | 63 | 91 | 63 | 111 |
P value = 1.53e-13 (Fisher's exact test), Q value = 9.9e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
4P LOSS MUTATED | 53 | 4 | 6 |
4P LOSS WILD-TYPE | 141 | 142 | 133 |
P value = 4.29e-09 (Chi-square test), Q value = 2.6e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
4P LOSS MUTATED | 4 | 37 | 2 | 3 | 11 | 6 |
4P LOSS WILD-TYPE | 52 | 105 | 72 | 20 | 28 | 139 |
P value = 1.36e-26 (Chi-square test), Q value = 9.2e-24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
4Q LOSS MUTATED | 1 | 8 | 54 | 0 | 1 |
4Q LOSS WILD-TYPE | 289 | 32 | 85 | 17 | 5 |
P value = 2.66e-11 (Fisher's exact test), Q value = 1.7e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
4Q LOSS MUTATED | 39 | 16 | 2 |
4Q LOSS WILD-TYPE | 104 | 69 | 147 |
P value = 2.64e-08 (Fisher's exact test), Q value = 1.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
4Q LOSS MUTATED | 27 | 0 | 5 |
4Q LOSS WILD-TYPE | 115 | 107 | 108 |
P value = 2.45e-08 (Fisher's exact test), Q value = 1.4e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
4Q LOSS MUTATED | 2 | 0 | 2 | 28 |
4Q LOSS WILD-TYPE | 63 | 92 | 63 | 112 |
P value = 1.23e-10 (Fisher's exact test), Q value = 7.5e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
4Q LOSS MUTATED | 49 | 6 | 6 |
4Q LOSS WILD-TYPE | 145 | 140 | 133 |
P value = 1.94e-08 (Chi-square test), Q value = 1.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
4Q LOSS MUTATED | 4 | 35 | 3 | 3 | 11 | 5 |
4Q LOSS WILD-TYPE | 52 | 107 | 71 | 20 | 28 | 140 |
P value = 1.16e-10 (Chi-square test), Q value = 7.2e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
5P LOSS MUTATED | 0 | 8 | 19 | 0 | 0 |
5P LOSS WILD-TYPE | 290 | 32 | 120 | 17 | 6 |
P value = 0.000334 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
5P LOSS MUTATED | 15 | 4 | 1 |
5P LOSS WILD-TYPE | 128 | 81 | 148 |
P value = 1.18e-18 (Chi-square test), Q value = 7.8e-16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
5Q LOSS MUTATED | 0 | 7 | 38 | 0 | 0 |
5Q LOSS WILD-TYPE | 290 | 33 | 101 | 17 | 6 |
P value = 7.26e-09 (Fisher's exact test), Q value = 4.3e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
5Q LOSS MUTATED | 29 | 6 | 1 |
5Q LOSS WILD-TYPE | 114 | 79 | 148 |
P value = 6.28e-08 (Fisher's exact test), Q value = 3.6e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
5Q LOSS MUTATED | 25 | 1 | 2 |
5Q LOSS WILD-TYPE | 117 | 106 | 111 |
P value = 2.96e-08 (Fisher's exact test), Q value = 1.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
5Q LOSS MUTATED | 0 | 0 | 3 | 25 |
5Q LOSS WILD-TYPE | 65 | 92 | 62 | 115 |
P value = 2.58e-07 (Fisher's exact test), Q value = 0.00014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
5Q LOSS MUTATED | 35 | 4 | 5 |
5Q LOSS WILD-TYPE | 159 | 142 | 134 |
P value = 1.38e-07 (Chi-square test), Q value = 7.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
5Q LOSS MUTATED | 2 | 28 | 2 | 1 | 8 | 3 |
5Q LOSS WILD-TYPE | 54 | 114 | 72 | 22 | 31 | 142 |
P value = 0.000236 (Chi-square test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
6Q LOSS MUTATED | 0 | 3 | 9 | 0 | 0 |
6Q LOSS WILD-TYPE | 290 | 37 | 130 | 17 | 6 |
P value = 9.88e-10 (Chi-square test), Q value = 6e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
7P LOSS MUTATED | 3 | 1 | 24 | 0 | 1 |
7P LOSS WILD-TYPE | 287 | 39 | 115 | 17 | 5 |
P value = 0.000162 (Fisher's exact test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
7P LOSS MUTATED | 18 | 2 | 2 |
7P LOSS WILD-TYPE | 124 | 105 | 111 |
P value = 2.27e-05 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
7P LOSS MUTATED | 2 | 0 | 1 | 19 |
7P LOSS WILD-TYPE | 63 | 92 | 64 | 121 |
P value = 4.91e-14 (Chi-square test), Q value = 3.2e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
7Q LOSS MUTATED | 0 | 0 | 26 | 0 | 1 |
7Q LOSS WILD-TYPE | 290 | 40 | 113 | 17 | 5 |
P value = 0.00018 (Fisher's exact test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
7Q LOSS MUTATED | 16 | 6 | 1 |
7Q LOSS WILD-TYPE | 127 | 79 | 148 |
P value = 1.32e-07 (Fisher's exact test), Q value = 7.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
7Q LOSS MUTATED | 17 | 0 | 0 |
7Q LOSS WILD-TYPE | 125 | 107 | 113 |
P value = 1.59e-06 (Fisher's exact test), Q value = 0.00087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
7Q LOSS MUTATED | 0 | 0 | 0 | 17 |
7Q LOSS WILD-TYPE | 65 | 92 | 65 | 123 |
P value = 0.000172 (Chi-square test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
7Q LOSS MUTATED | 2 | 19 | 0 | 0 | 2 | 4 |
7Q LOSS WILD-TYPE | 54 | 123 | 74 | 23 | 37 | 141 |
P value = 4.01e-24 (Chi-square test), Q value = 2.7e-21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
8P LOSS MUTATED | 2 | 1 | 48 | 2 | 0 |
8P LOSS WILD-TYPE | 288 | 39 | 91 | 15 | 6 |
P value = 1.08e-11 (Fisher's exact test), Q value = 6.8e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
8P LOSS MUTATED | 37 | 8 | 1 |
8P LOSS WILD-TYPE | 106 | 77 | 148 |
P value = 4.84e-12 (Fisher's exact test), Q value = 3.1e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
8P LOSS MUTATED | 30 | 0 | 1 |
8P LOSS WILD-TYPE | 112 | 107 | 112 |
P value = 6.9e-10 (Fisher's exact test), Q value = 4.2e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
8P LOSS MUTATED | 1 | 0 | 1 | 29 |
8P LOSS WILD-TYPE | 64 | 92 | 64 | 111 |
P value = 2.87e-14 (Fisher's exact test), Q value = 1.9e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
8P LOSS MUTATED | 45 | 1 | 4 |
8P LOSS WILD-TYPE | 149 | 145 | 135 |
P value = 5.45e-14 (Chi-square test), Q value = 3.5e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
8P LOSS MUTATED | 2 | 39 | 0 | 2 | 6 | 1 |
8P LOSS WILD-TYPE | 54 | 103 | 74 | 21 | 33 | 144 |
P value = 2.23e-05 (Chi-square test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
8Q LOSS MUTATED | 0 | 0 | 11 | 1 | 0 |
8Q LOSS WILD-TYPE | 290 | 40 | 128 | 16 | 6 |
P value = 2.63e-29 (Chi-square test), Q value = 1.8e-26
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
9P LOSS MUTATED | 2 | 11 | 61 | 2 | 0 |
9P LOSS WILD-TYPE | 288 | 29 | 78 | 15 | 6 |
P value = 2.34e-06 (Fisher's exact test), Q value = 0.0013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
9P LOSS MUTATED | 36 | 19 | 8 |
9P LOSS WILD-TYPE | 107 | 66 | 141 |
P value = 2.12e-12 (Fisher's exact test), Q value = 1.4e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
9P LOSS MUTATED | 41 | 3 | 3 |
9P LOSS WILD-TYPE | 101 | 104 | 110 |
P value = 7.6e-15 (Fisher's exact test), Q value = 5e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
9P LOSS MUTATED | 0 | 1 | 3 | 43 |
9P LOSS WILD-TYPE | 65 | 91 | 62 | 97 |
P value = 5.74e-09 (Fisher's exact test), Q value = 3.4e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
9P LOSS MUTATED | 53 | 15 | 6 |
9P LOSS WILD-TYPE | 141 | 131 | 133 |
P value = 5.52e-09 (Chi-square test), Q value = 3.3e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
9P LOSS MUTATED | 2 | 44 | 2 | 3 | 9 | 14 |
9P LOSS WILD-TYPE | 54 | 98 | 72 | 20 | 30 | 131 |
P value = 0.000248 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 20 | 15 | 18 |
9Q LOSS MUTATED | 0 | 0 | 7 |
9Q LOSS WILD-TYPE | 20 | 15 | 11 |
P value = 1.53e-37 (Chi-square test), Q value = 1e-34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
9Q LOSS MUTATED | 3 | 13 | 75 | 1 | 1 |
9Q LOSS WILD-TYPE | 287 | 27 | 64 | 16 | 5 |
P value = 5.86e-07 (Fisher's exact test), Q value = 0.00032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
9Q LOSS MUTATED | 46 | 21 | 12 |
9Q LOSS WILD-TYPE | 97 | 64 | 137 |
P value = 0.000334 (Chi-square test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 40 | 36 | 40 | 16 | 38 | 24 |
9Q LOSS MUTATED | 5 | 10 | 0 | 3 | 0 | 6 |
9Q LOSS WILD-TYPE | 35 | 26 | 40 | 13 | 38 | 18 |
P value = 2.56e-13 (Fisher's exact test), Q value = 1.6e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
9Q LOSS MUTATED | 48 | 4 | 5 |
9Q LOSS WILD-TYPE | 94 | 103 | 108 |
P value = 2.82e-16 (Fisher's exact test), Q value = 1.8e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
9Q LOSS MUTATED | 0 | 2 | 5 | 50 |
9Q LOSS WILD-TYPE | 65 | 90 | 60 | 90 |
P value = 1.43e-11 (Fisher's exact test), Q value = 9e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
9Q LOSS MUTATED | 66 | 17 | 8 |
9Q LOSS WILD-TYPE | 128 | 129 | 131 |
P value = 1.4e-07 (Chi-square test), Q value = 7.9e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
9Q LOSS MUTATED | 6 | 48 | 4 | 4 | 12 | 17 |
9Q LOSS WILD-TYPE | 50 | 94 | 70 | 19 | 27 | 128 |
P value = 4e-11 (Chi-square test), Q value = 2.5e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
10P LOSS MUTATED | 0 | 1 | 22 | 0 | 0 |
10P LOSS WILD-TYPE | 290 | 39 | 117 | 17 | 6 |
P value = 0.000334 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
10P LOSS MUTATED | 15 | 4 | 1 |
10P LOSS WILD-TYPE | 128 | 81 | 148 |
P value = 0.000469 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
10P LOSS MUTATED | 11 | 1 | 0 |
10P LOSS WILD-TYPE | 131 | 106 | 113 |
P value = 2.61e-06 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
10P LOSS MUTATED | 20 | 1 | 1 |
10P LOSS WILD-TYPE | 174 | 145 | 138 |
P value = 2.94e-10 (Chi-square test), Q value = 1.8e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
10Q LOSS MUTATED | 1 | 1 | 22 | 0 | 0 |
10Q LOSS WILD-TYPE | 289 | 39 | 117 | 17 | 6 |
P value = 0.000192 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
10Q LOSS MUTATED | 16 | 5 | 1 |
10Q LOSS WILD-TYPE | 127 | 80 | 148 |
P value = 0.000469 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
10Q LOSS MUTATED | 11 | 1 | 0 |
10Q LOSS WILD-TYPE | 131 | 106 | 113 |
P value = 7.02e-05 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
10Q LOSS MUTATED | 20 | 2 | 2 |
10Q LOSS WILD-TYPE | 174 | 144 | 137 |
P value = 1.44e-21 (Chi-square test), Q value = 9.7e-19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
11P LOSS MUTATED | 1 | 4 | 45 | 1 | 2 |
11P LOSS WILD-TYPE | 289 | 36 | 94 | 16 | 4 |
P value = 7.44e-07 (Fisher's exact test), Q value = 0.00041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
11P LOSS MUTATED | 31 | 13 | 4 |
11P LOSS WILD-TYPE | 112 | 72 | 145 |
P value = 4.46e-08 (Fisher's exact test), Q value = 2.6e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
11P LOSS MUTATED | 24 | 0 | 3 |
11P LOSS WILD-TYPE | 118 | 107 | 110 |
P value = 2.6e-07 (Fisher's exact test), Q value = 0.00015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
11P LOSS MUTATED | 1 | 0 | 2 | 24 |
11P LOSS WILD-TYPE | 64 | 92 | 63 | 116 |
P value = 5.58e-10 (Fisher's exact test), Q value = 3.4e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
11P LOSS MUTATED | 42 | 6 | 3 |
11P LOSS WILD-TYPE | 152 | 140 | 136 |
P value = 2.14e-06 (Chi-square test), Q value = 0.0012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
11P LOSS MUTATED | 1 | 29 | 2 | 2 | 9 | 8 |
11P LOSS WILD-TYPE | 55 | 113 | 72 | 21 | 30 | 137 |
P value = 1.15e-15 (Chi-square test), Q value = 7.5e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
11Q LOSS MUTATED | 1 | 6 | 35 | 1 | 2 |
11Q LOSS WILD-TYPE | 289 | 34 | 104 | 16 | 4 |
P value = 7.53e-05 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
11Q LOSS MUTATED | 26 | 12 | 5 |
11Q LOSS WILD-TYPE | 117 | 73 | 144 |
P value = 0.000397 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
11Q LOSS MUTATED | 17 | 2 | 2 |
11Q LOSS WILD-TYPE | 125 | 105 | 111 |
P value = 8.07e-06 (Fisher's exact test), Q value = 0.0042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
11Q LOSS MUTATED | 1 | 0 | 1 | 19 |
11Q LOSS WILD-TYPE | 64 | 92 | 64 | 121 |
P value = 1.74e-07 (Fisher's exact test), Q value = 9.8e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
11Q LOSS MUTATED | 35 | 6 | 3 |
11Q LOSS WILD-TYPE | 159 | 140 | 136 |
P value = 7.76e-06 (Chi-square test), Q value = 0.0041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
11Q LOSS MUTATED | 1 | 25 | 0 | 1 | 8 | 9 |
11Q LOSS WILD-TYPE | 55 | 117 | 74 | 22 | 31 | 136 |
P value = 3.86e-11 (Chi-square test), Q value = 2.4e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
12P LOSS MUTATED | 0 | 2 | 23 | 0 | 0 |
12P LOSS WILD-TYPE | 290 | 38 | 116 | 17 | 6 |
P value = 0.000192 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
12P LOSS MUTATED | 16 | 5 | 1 |
12P LOSS WILD-TYPE | 127 | 80 | 148 |
P value = 3.62e-05 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
12P LOSS MUTATED | 12 | 0 | 0 |
12P LOSS WILD-TYPE | 130 | 107 | 113 |
P value = 1.63e-08 (Fisher's exact test), Q value = 9.6e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
12P LOSS MUTATED | 23 | 1 | 0 |
12P LOSS WILD-TYPE | 171 | 145 | 139 |
P value = 8.92e-06 (Chi-square test), Q value = 0.0047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
12P LOSS MUTATED | 1 | 19 | 1 | 0 | 2 | 1 |
12P LOSS WILD-TYPE | 55 | 123 | 73 | 23 | 37 | 144 |
P value = 1.23e-09 (Chi-square test), Q value = 7.4e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
12Q LOSS MUTATED | 0 | 0 | 18 | 0 | 0 |
12Q LOSS WILD-TYPE | 290 | 40 | 121 | 17 | 6 |
P value = 1e-04 (Fisher's exact test), Q value = 0.049
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
12Q LOSS MUTATED | 13 | 3 | 0 |
12Q LOSS WILD-TYPE | 130 | 82 | 149 |
P value = 5.08e-07 (Fisher's exact test), Q value = 0.00028
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
12Q LOSS MUTATED | 17 | 0 | 0 |
12Q LOSS WILD-TYPE | 177 | 146 | 139 |
P value = 0.000181 (Chi-square test), Q value = 0.086
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
12Q LOSS MUTATED | 1 | 13 | 0 | 0 | 3 | 0 |
12Q LOSS WILD-TYPE | 55 | 129 | 74 | 23 | 36 | 145 |
P value = 2.43e-18 (Chi-square test), Q value = 1.6e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
13Q LOSS MUTATED | 5 | 15 | 39 | 0 | 1 |
13Q LOSS WILD-TYPE | 285 | 25 | 100 | 17 | 5 |
P value = 0.000113 (Fisher's exact test), Q value = 0.055
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
13Q LOSS MUTATED | 31 | 14 | 8 |
13Q LOSS WILD-TYPE | 112 | 71 | 141 |
P value = 0.000395 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
13Q LOSS MUTATED | 23 | 3 | 6 |
13Q LOSS WILD-TYPE | 119 | 104 | 107 |
P value = 3.89e-06 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
13Q LOSS MUTATED | 3 | 1 | 2 | 26 |
13Q LOSS WILD-TYPE | 62 | 91 | 63 | 114 |
P value = 8.53e-05 (Fisher's exact test), Q value = 0.042
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
13Q LOSS MUTATED | 39 | 10 | 9 |
13Q LOSS WILD-TYPE | 155 | 136 | 130 |
P value = 8.94e-17 (Chi-square test), Q value = 5.9e-14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
14Q LOSS MUTATED | 0 | 4 | 35 | 1 | 2 |
14Q LOSS WILD-TYPE | 290 | 36 | 104 | 16 | 4 |
P value = 1.48e-09 (Fisher's exact test), Q value = 8.9e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
14Q LOSS MUTATED | 27 | 5 | 0 |
14Q LOSS WILD-TYPE | 116 | 80 | 149 |
P value = 3.38e-08 (Fisher's exact test), Q value = 2e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
14Q LOSS MUTATED | 23 | 0 | 2 |
14Q LOSS WILD-TYPE | 119 | 107 | 111 |
P value = 1.95e-07 (Fisher's exact test), Q value = 0.00011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
14Q LOSS MUTATED | 1 | 0 | 1 | 23 |
14Q LOSS WILD-TYPE | 64 | 92 | 64 | 117 |
P value = 4.32e-07 (Fisher's exact test), Q value = 0.00024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
14Q LOSS MUTATED | 30 | 1 | 8 |
14Q LOSS WILD-TYPE | 164 | 145 | 131 |
P value = 9.94e-09 (Chi-square test), Q value = 5.9e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
14Q LOSS MUTATED | 3 | 27 | 0 | 1 | 7 | 1 |
14Q LOSS WILD-TYPE | 53 | 115 | 74 | 22 | 32 | 144 |
P value = 4.68e-35 (Chi-square test), Q value = 3.2e-32
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
15Q LOSS MUTATED | 1 | 10 | 67 | 0 | 3 |
15Q LOSS WILD-TYPE | 289 | 30 | 72 | 17 | 3 |
P value = 1.61e-13 (Fisher's exact test), Q value = 1e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
15Q LOSS MUTATED | 51 | 16 | 4 |
15Q LOSS WILD-TYPE | 92 | 69 | 145 |
P value = 7.92e-10 (Fisher's exact test), Q value = 4.8e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
15Q LOSS MUTATED | 36 | 2 | 5 |
15Q LOSS WILD-TYPE | 106 | 105 | 108 |
P value = 1.07e-10 (Fisher's exact test), Q value = 6.6e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
15Q LOSS MUTATED | 1 | 1 | 4 | 37 |
15Q LOSS WILD-TYPE | 64 | 91 | 61 | 103 |
P value = 2.16e-15 (Fisher's exact test), Q value = 1.4e-12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
15Q LOSS MUTATED | 64 | 7 | 7 |
15Q LOSS WILD-TYPE | 130 | 139 | 132 |
P value = 2.73e-12 (Chi-square test), Q value = 1.7e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
15Q LOSS MUTATED | 5 | 49 | 3 | 3 | 11 | 7 |
15Q LOSS WILD-TYPE | 51 | 93 | 71 | 20 | 28 | 138 |
P value = 2.82e-31 (Chi-square test), Q value = 1.9e-28
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
16P LOSS MUTATED | 2 | 6 | 61 | 0 | 0 |
16P LOSS WILD-TYPE | 288 | 34 | 78 | 17 | 6 |
P value = 2.77e-09 (Fisher's exact test), Q value = 1.7e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
16P LOSS MUTATED | 38 | 17 | 4 |
16P LOSS WILD-TYPE | 105 | 68 | 145 |
P value = 7.52e-10 (Fisher's exact test), Q value = 4.6e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
16P LOSS MUTATED | 35 | 2 | 4 |
16P LOSS WILD-TYPE | 107 | 105 | 109 |
P value = 1.47e-09 (Fisher's exact test), Q value = 8.9e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
16P LOSS MUTATED | 3 | 1 | 2 | 35 |
16P LOSS WILD-TYPE | 62 | 91 | 63 | 105 |
P value = 4.3e-09 (Fisher's exact test), Q value = 2.6e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
16P LOSS MUTATED | 49 | 6 | 10 |
16P LOSS WILD-TYPE | 145 | 140 | 129 |
P value = 4.77e-11 (Chi-square test), Q value = 3e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
16P LOSS MUTATED | 2 | 41 | 4 | 1 | 11 | 6 |
16P LOSS WILD-TYPE | 54 | 101 | 70 | 22 | 28 | 139 |
P value = 5.94e-40 (Chi-square test), Q value = 4.1e-37
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
16Q LOSS MUTATED | 13 | 10 | 87 | 0 | 0 |
16Q LOSS WILD-TYPE | 277 | 30 | 52 | 17 | 6 |
P value = 2.86e-11 (Fisher's exact test), Q value = 1.8e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
16Q LOSS MUTATED | 58 | 25 | 11 |
16Q LOSS WILD-TYPE | 85 | 60 | 138 |
P value = 1.01e-11 (Fisher's exact test), Q value = 6.4e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
16Q LOSS MUTATED | 54 | 6 | 11 |
16Q LOSS WILD-TYPE | 88 | 101 | 102 |
P value = 2.34e-10 (Fisher's exact test), Q value = 1.4e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
16Q LOSS MUTATED | 9 | 4 | 6 | 52 |
16Q LOSS WILD-TYPE | 56 | 88 | 59 | 88 |
P value = 8.41e-13 (Fisher's exact test), Q value = 5.4e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
16Q LOSS MUTATED | 75 | 11 | 19 |
16Q LOSS WILD-TYPE | 119 | 135 | 120 |
P value = 1.53e-13 (Chi-square test), Q value = 9.9e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
16Q LOSS MUTATED | 5 | 61 | 9 | 2 | 15 | 13 |
16Q LOSS WILD-TYPE | 51 | 81 | 65 | 21 | 24 | 132 |
P value = 8.66e-53 (Chi-square test), Q value = 5.9e-50
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
17P LOSS MUTATED | 3 | 9 | 93 | 0 | 0 |
17P LOSS WILD-TYPE | 287 | 31 | 46 | 17 | 6 |
P value = 8.14e-13 (Fisher's exact test), Q value = 5.2e-10
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
17P LOSS MUTATED | 61 | 18 | 10 |
17P LOSS WILD-TYPE | 82 | 67 | 139 |
P value = 4.51e-05 (Chi-square test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 40 | 36 | 40 | 16 | 38 | 24 |
17P LOSS MUTATED | 4 | 10 | 2 | 0 | 1 | 9 |
17P LOSS WILD-TYPE | 36 | 26 | 38 | 16 | 37 | 15 |
P value = 1.6e-20 (Fisher's exact test), Q value = 1.1e-17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
17P LOSS MUTATED | 58 | 2 | 4 |
17P LOSS WILD-TYPE | 84 | 105 | 109 |
P value = 2.15e-21 (Fisher's exact test), Q value = 1.4e-18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
17P LOSS MUTATED | 1 | 0 | 5 | 58 |
17P LOSS WILD-TYPE | 64 | 92 | 60 | 82 |
P value = 2.01e-16 (Fisher's exact test), Q value = 1.3e-13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
17P LOSS MUTATED | 78 | 14 | 9 |
17P LOSS WILD-TYPE | 116 | 132 | 130 |
P value = 1.42e-11 (Chi-square test), Q value = 8.9e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
17P LOSS MUTATED | 6 | 58 | 3 | 5 | 12 | 17 |
17P LOSS WILD-TYPE | 50 | 84 | 71 | 18 | 27 | 128 |
P value = 1.48e-29 (Chi-square test), Q value = 1e-26
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
17Q LOSS MUTATED | 1 | 9 | 58 | 0 | 0 |
17Q LOSS WILD-TYPE | 289 | 31 | 81 | 17 | 6 |
P value = 3.41e-05 (Fisher's exact test), Q value = 0.017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
17Q LOSS MUTATED | 35 | 14 | 9 |
17Q LOSS WILD-TYPE | 108 | 71 | 140 |
P value = 4.28e-09 (Fisher's exact test), Q value = 2.6e-06
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
17Q LOSS MUTATED | 33 | 2 | 4 |
17Q LOSS WILD-TYPE | 109 | 105 | 109 |
P value = 1.95e-11 (Fisher's exact test), Q value = 1.2e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
17Q LOSS MUTATED | 1 | 0 | 3 | 35 |
17Q LOSS WILD-TYPE | 64 | 92 | 62 | 105 |
P value = 2.87e-07 (Fisher's exact test), Q value = 0.00016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
17Q LOSS MUTATED | 46 | 11 | 7 |
17Q LOSS WILD-TYPE | 148 | 135 | 132 |
P value = 4.27e-05 (Chi-square test), Q value = 0.022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
17Q LOSS MUTATED | 4 | 31 | 2 | 5 | 10 | 12 |
17Q LOSS WILD-TYPE | 52 | 111 | 72 | 18 | 29 | 133 |
P value = 3.15e-12 (Chi-square test), Q value = 2e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
18P LOSS MUTATED | 1 | 9 | 25 | 0 | 1 |
18P LOSS WILD-TYPE | 289 | 31 | 114 | 17 | 5 |
P value = 2.09e-05 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
18P LOSS MUTATED | 22 | 6 | 2 |
18P LOSS WILD-TYPE | 121 | 79 | 147 |
P value = 0.000172 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
18P LOSS MUTATED | 1 | 0 | 4 | 17 |
18P LOSS WILD-TYPE | 64 | 92 | 61 | 123 |
P value = 0.000131 (Chi-square test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
18P LOSS MUTATED | 2 | 15 | 2 | 2 | 9 | 4 |
18P LOSS WILD-TYPE | 54 | 127 | 72 | 21 | 30 | 141 |
P value = 9.75e-18 (Chi-square test), Q value = 6.4e-15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
18Q LOSS MUTATED | 1 | 9 | 38 | 0 | 1 |
18Q LOSS WILD-TYPE | 289 | 31 | 101 | 17 | 5 |
P value = 1.98e-06 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
18Q LOSS MUTATED | 30 | 10 | 4 |
18Q LOSS WILD-TYPE | 113 | 75 | 145 |
P value = 3.87e-06 (Fisher's exact test), Q value = 0.0021
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
18Q LOSS MUTATED | 23 | 1 | 4 |
18Q LOSS WILD-TYPE | 119 | 106 | 109 |
P value = 5.65e-07 (Fisher's exact test), Q value = 0.00031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
18Q LOSS MUTATED | 1 | 0 | 3 | 24 |
18Q LOSS WILD-TYPE | 64 | 92 | 62 | 116 |
P value = 8.82e-07 (Fisher's exact test), Q value = 0.00048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
18Q LOSS MUTATED | 36 | 5 | 6 |
18Q LOSS WILD-TYPE | 158 | 141 | 133 |
P value = 3.01e-06 (Chi-square test), Q value = 0.0016
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
18Q LOSS MUTATED | 3 | 26 | 1 | 3 | 9 | 5 |
18Q LOSS WILD-TYPE | 53 | 116 | 73 | 20 | 30 | 140 |
P value = 4.63e-12 (Chi-square test), Q value = 2.9e-09
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
19P LOSS MUTATED | 0 | 7 | 26 | 1 | 0 |
19P LOSS WILD-TYPE | 290 | 33 | 113 | 16 | 6 |
P value = 1.07e-07 (Fisher's exact test), Q value = 6.1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
19P LOSS MUTATED | 25 | 4 | 1 |
19P LOSS WILD-TYPE | 118 | 81 | 148 |
P value = 1.84e-05 (Fisher's exact test), Q value = 0.0095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
19P LOSS MUTATED | 16 | 0 | 2 |
19P LOSS WILD-TYPE | 126 | 107 | 111 |
P value = 7.84e-06 (Fisher's exact test), Q value = 0.0041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
19P LOSS MUTATED | 1 | 0 | 0 | 17 |
19P LOSS WILD-TYPE | 64 | 92 | 65 | 123 |
P value = 5.72e-06 (Fisher's exact test), Q value = 0.003
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
19P LOSS MUTATED | 26 | 2 | 4 |
19P LOSS WILD-TYPE | 168 | 144 | 135 |
P value = 4.34e-06 (Chi-square test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
19P LOSS MUTATED | 1 | 20 | 1 | 1 | 7 | 2 |
19P LOSS WILD-TYPE | 55 | 122 | 73 | 22 | 32 | 143 |
P value = 1.79e-08 (Chi-square test), Q value = 1e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
19Q LOSS MUTATED | 1 | 6 | 20 | 1 | 0 |
19Q LOSS WILD-TYPE | 289 | 34 | 119 | 16 | 6 |
P value = 4.65e-05 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
19Q LOSS MUTATED | 18 | 5 | 1 |
19Q LOSS WILD-TYPE | 125 | 80 | 148 |
P value = 0.000499 (Chi-square test), Q value = 0.23
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
19Q LOSS MUTATED | 1 | 16 | 1 | 1 | 5 | 2 |
19Q LOSS WILD-TYPE | 55 | 126 | 73 | 22 | 34 | 143 |
P value = 0.000122 (Chi-square test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
20P LOSS MUTATED | 1 | 2 | 12 | 0 | 0 |
20P LOSS WILD-TYPE | 289 | 38 | 127 | 17 | 6 |
P value = 6.47e-08 (Chi-square test), Q value = 3.7e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
21Q LOSS MUTATED | 3 | 4 | 23 | 1 | 1 |
21Q LOSS WILD-TYPE | 287 | 36 | 116 | 16 | 5 |
P value = 0.000148 (Fisher's exact test), Q value = 0.071
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
21Q LOSS MUTATED | 15 | 0 | 3 |
21Q LOSS WILD-TYPE | 127 | 107 | 110 |
P value = 1.41e-36 (Chi-square test), Q value = 9.6e-34
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
22Q LOSS MUTATED | 1 | 13 | 71 | 1 | 1 |
22Q LOSS WILD-TYPE | 289 | 27 | 68 | 16 | 5 |
P value = 4.23e-08 (Fisher's exact test), Q value = 2.5e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 143 | 85 | 149 |
22Q LOSS MUTATED | 46 | 22 | 10 |
22Q LOSS WILD-TYPE | 97 | 63 | 139 |
P value = 4.88e-11 (Fisher's exact test), Q value = 3e-08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 142 | 107 | 113 |
22Q LOSS MUTATED | 41 | 3 | 5 |
22Q LOSS WILD-TYPE | 101 | 104 | 108 |
P value = 3.29e-14 (Fisher's exact test), Q value = 2.1e-11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 65 | 92 | 65 | 140 |
22Q LOSS MUTATED | 1 | 1 | 3 | 44 |
22Q LOSS WILD-TYPE | 64 | 91 | 62 | 96 |
P value = 3.2e-10 (Fisher's exact test), Q value = 2e-07
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 194 | 146 | 139 |
22Q LOSS MUTATED | 61 | 14 | 9 |
22Q LOSS WILD-TYPE | 133 | 132 | 130 |
P value = 5.61e-08 (Chi-square test), Q value = 3.2e-05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 |
---|---|---|---|---|---|---|
ALL | 56 | 142 | 74 | 23 | 39 | 145 |
22Q LOSS MUTATED | 5 | 46 | 3 | 4 | 11 | 15 |
22Q LOSS WILD-TYPE | 51 | 96 | 71 | 19 | 28 | 130 |
P value = 2.97e-07 (Chi-square test), Q value = 0.00017
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 290 | 40 | 139 | 17 | 6 |
XQ LOSS MUTATED | 0 | 1 | 16 | 1 | 0 |
XQ LOSS WILD-TYPE | 290 | 39 | 123 | 16 | 6 |
-
Mutation data file = broad_values_by_arm.mutsig.cluster.txt
-
Molecular subtypes file = UCEC-TP.transferedmergedcluster.txt
-
Number of patients = 492
-
Number of significantly arm-level cnvs = 79
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multi-class clinical features (nominal or ordinal), Chi-square tests (Greenwood and Nikulin 1996) were used to estimate the P values using the 'chisq.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
This is an experimental feature. The full results of the analysis summarized in this report can be downloaded from the TCGA Data Coordination Center.