stddata__2013_02_22 Samples Summary Report
- Overview
+ Introduction
- Summary

There were 69 redacted samples, 2889 replicate aliquots, and 11 blacklisted aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data.

Table 1.  Get Full Table Summary of TCGA Tumor Data.

Tumor BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF
BLCA 153 128 153 105 153 0 122 0 135 54 28
BRCA 951 869 905 0 888 527 843 0 892 408 772
CESC 134 40 117 0 122 0 97 0 122 0 39
COAD 423 423 422 69 420 155 193 0 407 269 155
COADREAD 592 591 586 104 582 224 265 0 550 399 224
DLBC 28 0 18 0 17 0 0 0 16 0 0
ESCA 50 0 0 0 20 0 0 0 0 0 0
GBM 598 565 580 0 405 542 161 491 0 214 291
HNSC 374 325 326 108 310 0 304 0 326 212 306
KICH 66 0 66 0 65 0 66 0 66 0 0
KIRC 513 502 497 0 500 72 480 0 481 454 293
KIRP 159 103 156 0 103 16 76 0 117 0 100
LAML 0 200 200 0 194 0 179 0 187 0 197
LGG 222 208 222 0 176 27 220 0 221 0 170
LIHC 110 69 99 0 98 0 34 0 96 0 0
LUAD 563 347 405 0 430 32 353 0 401 237 229
LUSC 420 327 359 0 359 154 261 0 349 195 178
OV 592 580 569 0 584 574 297 570 454 412 316
PAAD 57 0 57 0 49 0 40 0 34 0 34
PANCAN12 5268 4889 5078 423 4905 2179 3637 1061 4262 2785 3082
PRAD 190 148 178 0 172 0 140 0 177 0 83
READ 169 168 164 35 162 69 72 0 143 130 69
SARC 52 14 29 0 52 0 0 0 29 0 0
SKCM 316 184 273 119 288 0 265 0 272 164 253
STAD 308 162 238 0 257 0 43 0 237 0 116
THCA 500 290 433 94 435 0 409 0 411 224 323
UCEC 512 455 498 106 500 54 372 0 487 200 248
Totals 7460 6107 6964 636 6759 2222 5027 1061 6060 3173 4200
- Results
+ Redactions
+ Replicate Filtered Samples
+ Blacklisted Samples
+ Sample Heatmaps
+ Methods & Data
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