Broad GDAC Analyses Status
analyses__2013_03_26__esca Run for Tumor Type: ESCA

TumorBCRClinicalCNLowPMethylationmRNAmRNAseqmiRmiRseqRPPAMAF
ESCA50020050000000

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1TP-Aggregate_Gene_Status00010
2TP-Aggregate_Molecular_Subtype_Clusters00010
3TP-CoMut1.510000
4TP-CoMut2.010000
5TP-CoMutCV10000
6TP-CopyNumber_Clustering_CNMF10000
7TP-CopyNumber_Gistic200010
8TP-CopyNumber_Gistic2_Analysis00010
9TP-CopyNumber_Gistic2_Postprocess_Focal00010
10TP-Correlate_Clinical_vs_CopyNumber_Arm10000
11TP-Correlate_Clinical_vs_CopyNumber_Focal10000
12TP-Correlate_Clinical_vs_Methylation10000
13TP-Correlate_Clinical_vs_miR10000
14TP-Correlate_Clinical_vs_miRseq10000
15TP-Correlate_Clinical_vs_Molecular_Signatures10000
16TP-Correlate_Clinical_vs_mRNA10000
17TP-Correlate_Clinical_vs_mRNAseq10000
18TP-Correlate_Clinical_vs_Mutation10000
19TP-Correlate_Clinical_vs_RPPA10000
20TP-Correlate_CopyNumber_vs_miR10000
21TP-Correlate_CopyNumber_vs_mRNA10000
22TP-Correlate_CopyNumber_vs_mRNAseq10000
23TP-Correlate_Methylation_vs_mRNA10000
24TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
25TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
26TP-Correlate_molecularSubtype_vs_Mutation10000
27TP-GenerateStickFigures1.510000
28TP-GenerateStickFigures2.010000
29TP-GenerateStickFiguresCV10000
30TP-Hotnet10000
31TP-Hotnet_preprocess10000
32TP-Methylation_Clustering_CNMF00010
33TP-Methylation_Preprocess00010
34TP-miRseq_Clustering_CNMF10000
35TP-miRseq_Clustering_Consensus10000
36TP-miRseq_Preprocess10000
37TP-miR_Clustering_CNMF10000
38TP-miR_Clustering_Consensus10000
39TP-miR_FindDirectTargets10000
40TP-mRNAseq_Clustering_CNMF10000
41TP-mRNAseq_Clustering_Consensus10000
42TP-mRNA_Clustering_CNMF10000
43TP-mRNA_Clustering_Consensus10000
44TP-mRNA_Preprocess_Median10000
45TP-Mutation_Assessor10000
46TP-MutSigNozzleReport1.510000
47TP-MutSigNozzleReport2.010000
48TP-MutSigNozzleReportCV10000
49TP-MutSigPreprocess1.510000
50TP-MutSigPreprocess2.010000
51TP-MutSigRun1.510000
52TP-MutSigRun2.010000
53TP-MutSigRunCV10000
54TP-ParadigmPreprocess_mRNA10000
55TP-ParadigmPreprocess_RNASeq10000
56TP-Paradigm_mRNA10000
57TP-Paradigm_mRNA_And_CopyNumber10000
58TP-Paradigm_Prepare_mRNA10000
59TP-Paradigm_Prepare_mRNA_And_Copy_Number10000
60TP-Paradigm_Prepare_RNASeq10000
61TP-Paradigm_Prepare_RNASeq_And_Copy_Number10000
62TP-Paradigm_Preprocess_mRNA10000
63TP-Paradigm_Preprocess_mRNA_And_Copy_Number10000
64TP-Paradigm_Preprocess_RNASeq10000
65TP-Paradigm_Preprocess_RNASeq_And_Copy_Number10000
66TP-Paradigm_Report_Preprocess_mRNA10000
67TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
68TP-Paradigm_Report_Preprocess_RNASeq10000
69TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number10000
70TP-Paradigm_RNASeq10000
71TP-Paradigm_RNASeq_And_Copy_Number10000
72TP-Pathway_FindEnrichedGenes10000
73TP-Pathway_Hotnet10000
74TP-Pathway_Paradigm_mRNA10000
75TP-Pathway_Paradigm_mRNA_And_Copy_Number10000
76TP-Pathway_Paradigm_RNASeq10000
77TP-Pathway_Paradigm_RNASeq_And_Copy_Number10000
78TP-ProcessCoverageForMutSig1.510000
79TP-ProcessCoverageForMutSig2.010000
80TP-RPPA_Clustering_CNMF10000
81TP-RPPA_Clustering_Consensus10000
Total720090

This table generated on Tue Apr 23 22:07:58 2013