
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/378012/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/BRCA-TP/2919216/1.GDAC_mergedClustering.Finished/BRCA-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=BRCA-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=BRCA-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=929, in cluster file=913, common to both=913
[1]  64 913
[1] "Amp Peak  1(1p22.3) mutation analysis"
[1] 3
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                          208                           705 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                          208                           705 
[1] "Amp Peak  2(1q21.3) mutation analysis"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          659                           254 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          659                           254 
[1] "Amp Peak  3(1q44) mutation analysis"
[1] 3
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        655                         258 
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        655                         258 
[1] "Amp Peak  4(3p26.1) mutation analysis"
[1] 3
  AMP PEAK  4(3P26.1) MUTATED AMP PEAK  4(3P26.1) WILD-TYPE 
                          188                           725 
  AMP PEAK  4(3P26.1) MUTATED AMP PEAK  4(3P26.1) WILD-TYPE 
                          188                           725 
[1] "Amp Peak  5(3q26.32) mutation analysis"
[1] 3
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                           288                            625 
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                           288                            625 
[1] "Amp Peak  6(4q13.3) mutation analysis"
[1] 3
  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                          143                           770 
  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                          143                           770 
[1] "Amp Peak  7(6p23) mutation analysis"
[1] 3
  AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE 
                        243                         670 
  AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE 
                        243                         670 
[1] "Amp Peak  8(6q21) mutation analysis"
[1] 3
  AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE 
                        170                         743 
  AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE 
                        170                         743 
[1] "Amp Peak  9(8p11.23) mutation analysis"
[1] 3
  AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE 
                           346                            567 
  AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE 
                           346                            567 
[1] "Amp Peak 10(8p11.21) mutation analysis"
[1] 3
  AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE 
                           354                            559 
  AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE 
                           354                            559 
[1] "Amp Peak 11(8q24.21) mutation analysis"
[1] 3
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                           584                            329 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                           584                            329 
[1] "Amp Peak 12(10p15.1) mutation analysis"
[1] 3
  AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE 
                           258                            655 
  AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE 
                           258                            655 
[1] "Amp Peak 13(10q22.3) mutation analysis"
[1] 3
  AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE 
                           132                            781 
  AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE 
                           132                            781 
[1] "Amp Peak 14(11p13) mutation analysis"
[1] 3
  AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE 
                         192                          721 
  AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE 
                         192                          721 
[1] "Amp Peak 15(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE 
                           349                            564 
  AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE 
                           349                            564 
[1] "Amp Peak 16(11q14.1) mutation analysis"
[1] 3
  AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE 
                           234                            679 
  AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE 
                           234                            679 
[1] "Amp Peak 17(12p13.33) mutation analysis"
[1] 3
  AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE 
                            238                             675 
  AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE 
                            238                             675 
[1] "Amp Peak 18(12q15) mutation analysis"
[1] 3
  AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE 
                         235                          678 
  AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE 
                         235                          678 
[1] "Amp Peak 19(13q12.3) mutation analysis"
[1] 3
  AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE 
                           128                            785 
  AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE 
                           128                            785 
[1] "Amp Peak 20(13q34) mutation analysis"
[1] 3
  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                         159                          754 
  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                         159                          754 
[1] "Amp Peak 21(14q21.1) mutation analysis"
[1] 3
  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                           181                            732 
  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                           181                            732 
[1] "Amp Peak 22(15q26.3) mutation analysis"
[1] 3
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                           166                            747 
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                           166                            747 
[1] "Amp Peak 23(17q12) mutation analysis"
[1] 3
  AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE 
                         295                          618 
  AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE 
                         295                          618 
[1] "Amp Peak 24(17q23.1) mutation analysis"
[1] 3
  AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE 
                           374                            539 
  AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE 
                           374                            539 
[1] "Amp Peak 25(19q12) mutation analysis"
[1] 3
  AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE 
                         233                          680 
  AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE 
                         233                          680 
[1] "Amp Peak 26(19q13.42) mutation analysis"
[1] 3
  AMP PEAK 26(19Q13.42) MUTATED AMP PEAK 26(19Q13.42) WILD-TYPE 
                            235                             678 
  AMP PEAK 26(19Q13.42) MUTATED AMP PEAK 26(19Q13.42) WILD-TYPE 
                            235                             678 
[1] "Amp Peak 27(20q13.2) mutation analysis"
[1] 3
  AMP PEAK 27(20Q13.2) MUTATED AMP PEAK 27(20Q13.2) WILD-TYPE 
                           465                            448 
  AMP PEAK 27(20Q13.2) MUTATED AMP PEAK 27(20Q13.2) WILD-TYPE 
                           465                            448 
[1] "Del Peak  1(1p36.13) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           380                            533 
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           380                            533 
[1] "Del Peak  2(1p22.1) mutation analysis"
[1] 3
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                          305                           608 
  DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE 
                          305                           608 
[1] "Del Peak  3(2q37.3) mutation analysis"
[1] 3
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                          265                           648 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                          265                           648 
[1] "Del Peak  4(3p14.3) mutation analysis"
[1] 3
  DEL PEAK  4(3P14.3) MUTATED DEL PEAK  4(3P14.3) WILD-TYPE 
                          278                           635 
  DEL PEAK  4(3P14.3) MUTATED DEL PEAK  4(3P14.3) WILD-TYPE 
                          278                           635 
[1] "Del Peak  5(4p16.3) mutation analysis"
[1] 3
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                          281                           632 
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                          281                           632 
[1] "Del Peak  6(4q35.2) mutation analysis"
[1] 3
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                          283                           630 
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                          283                           630 
[1] "Del Peak  7(5q11.2) mutation analysis"
[1] 3
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                          234                           679 
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                          234                           679 
[1] "Del Peak  8(5q21.3) mutation analysis"
[1] 3
  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                          225                           688 
  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                          225                           688 
[1] "Del Peak  9(6p25.3) mutation analysis"
[1] 3
  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                          170                           743 
  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                          170                           743 
[1] "Del Peak 10(6q15) mutation analysis"
[1] 3
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                        301                         612 
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                        301                         612 
[1] "Del Peak 11(6q27) mutation analysis"
[1] 3
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                        314                         599 
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                        314                         599 
[1] "Del Peak 12(7p22.3) mutation analysis"
[1] 3
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                          118                           795 
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                          118                           795 
[1] "Del Peak 13(7q36.1) mutation analysis"
[1] 3
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                          174                           739 
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                          174                           739 
[1] "Del Peak 14(8p23.2) mutation analysis"
[1] 3
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                          481                           432 
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                          481                           432 
[1] "Del Peak 15(8p11.21) mutation analysis"
[1] 3
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                           173                            740 
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                           173                            740 
[1] "Del Peak 16(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE 
                          307                           606 
  DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE 
                          307                           606 
[1] "Del Peak 17(9q21.11) mutation analysis"
[1] 3
  DEL PEAK 17(9Q21.11) MUTATED DEL PEAK 17(9Q21.11) WILD-TYPE 
                           246                            667 
  DEL PEAK 17(9Q21.11) MUTATED DEL PEAK 17(9Q21.11) WILD-TYPE 
                           246                            667 
[1] "Del Peak 18(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                            261                             652 
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                            261                             652 
[1] "Del Peak 19(10q26.3) mutation analysis"
[1] 3
  DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE 
                           264                            649 
  DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE 
                           264                            649 
[1] "Del Peak 20(11p15.5) mutation analysis"
[1] 3
  DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE 
                           262                            651 
  DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE 
                           262                            651 
[1] "Del Peak 21(11q13.1) mutation analysis"
[1] 3
  DEL PEAK 21(11Q13.1) MUTATED DEL PEAK 21(11Q13.1) WILD-TYPE 
                           194                            719 
  DEL PEAK 21(11Q13.1) MUTATED DEL PEAK 21(11Q13.1) WILD-TYPE 
                           194                            719 
[1] "Del Peak 22(11q23.2) mutation analysis"
[1] 3
  DEL PEAK 22(11Q23.2) MUTATED DEL PEAK 22(11Q23.2) WILD-TYPE 
                           449                            464 
  DEL PEAK 22(11Q23.2) MUTATED DEL PEAK 22(11Q23.2) WILD-TYPE 
                           449                            464 
[1] "Del Peak 23(11q25) mutation analysis"
[1] 3
  DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE 
                         421                          492 
  DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE 
                         421                          492 
[1] "Del Peak 24(12p13.1) mutation analysis"
[1] 3
  DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE 
                           157                            756 
  DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE 
                           157                            756 
[1] "Del Peak 25(12q24.21) mutation analysis"
[1] 3
  DEL PEAK 25(12Q24.21) MUTATED DEL PEAK 25(12Q24.21) WILD-TYPE 
                            174                             739 
  DEL PEAK 25(12Q24.21) MUTATED DEL PEAK 25(12Q24.21) WILD-TYPE 
                            174                             739 
[1] "Del Peak 26(13q14.2) mutation analysis"
[1] 3
  DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE 
                           413                            500 
  DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE 
                           413                            500 
[1] "Del Peak 27(14q24.3) mutation analysis"
[1] 3
  DEL PEAK 27(14Q24.3) MUTATED DEL PEAK 27(14Q24.3) WILD-TYPE 
                           294                            619 
  DEL PEAK 27(14Q24.3) MUTATED DEL PEAK 27(14Q24.3) WILD-TYPE 
                           294                            619 
[1] "Del Peak 28(15q13.1) mutation analysis"
[1] 3
  DEL PEAK 28(15Q13.1) MUTATED DEL PEAK 28(15Q13.1) WILD-TYPE 
                           315                            598 
  DEL PEAK 28(15Q13.1) MUTATED DEL PEAK 28(15Q13.1) WILD-TYPE 
                           315                            598 
[1] "Del Peak 29(16q24.3) mutation analysis"
[1] 3
  DEL PEAK 29(16Q24.3) MUTATED DEL PEAK 29(16Q24.3) WILD-TYPE 
                           587                            326 
  DEL PEAK 29(16Q24.3) MUTATED DEL PEAK 29(16Q24.3) WILD-TYPE 
                           587                            326 
[1] "Del Peak 30(17p12) mutation analysis"
[1] 3
  DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE 
                         546                          367 
  DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE 
                         546                          367 
[1] "Del Peak 31(17q21.31) mutation analysis"
[1] 3
  DEL PEAK 31(17Q21.31) MUTATED DEL PEAK 31(17Q21.31) WILD-TYPE 
                            315                             598 
  DEL PEAK 31(17Q21.31) MUTATED DEL PEAK 31(17Q21.31) WILD-TYPE 
                            315                             598 
[1] "Del Peak 32(18q23) mutation analysis"
[1] 3
  DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE 
                         293                          620 
  DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE 
                         293                          620 
[1] "Del Peak 33(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE 
                           305                            608 
  DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE 
                           305                            608 
[1] "Del Peak 34(19q13.32) mutation analysis"
[1] 3
  DEL PEAK 34(19Q13.32) MUTATED DEL PEAK 34(19Q13.32) WILD-TYPE 
                            183                             730 
  DEL PEAK 34(19Q13.32) MUTATED DEL PEAK 34(19Q13.32) WILD-TYPE 
                            183                             730 
[1] "Del Peak 35(20p13) mutation analysis"
[1] 3
  DEL PEAK 35(20P13) MUTATED DEL PEAK 35(20P13) WILD-TYPE 
                         134                          779 
  DEL PEAK 35(20P13) MUTATED DEL PEAK 35(20P13) WILD-TYPE 
                         134                          779 
[1] "Del Peak 36(21q11.2) mutation analysis"
[1] 3
  DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE 
                           182                            731 
  DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE 
                           182                            731 
[1] "Del Peak 37(22q13.32) mutation analysis"
[1] 3
  DEL PEAK 37(22Q13.32) MUTATED DEL PEAK 37(22Q13.32) WILD-TYPE 
                            410                             503 
  DEL PEAK 37(22Q13.32) MUTATED DEL PEAK 37(22Q13.32) WILD-TYPE 
                            410                             503 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 

Input Data has 10 rows and 913 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 913 columns, 0 survival variables, and 10 non-survival variables.
MRNA_CNMF, nv=8, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=8, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p22.3) mutation analysis
D1V1, multiclass
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          13                           127
  CLUS_2                          57                            68
  CLUS_3                          46                           202
D1V3, multiclass
D1V4, multiclass
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          52                            95
  CLUS_2                          28                           105
  CLUS_3                          16                           101
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          32                           129
  CLUS_2                          12                            98
  CLUS_3                          52                            74
D1V7, multiclass
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          59                           277
  CLUS_2                          89                           116
  CLUS_3                          34                           253
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          33                           168
  CLUS_2                          65                           364
  CLUS_3                         103                           146
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          96                           108
  CLUS_2                          94                           522
  CLUS_3                          11                            48

Clustering(2) Variable = Amp Peak  2(1q21.3) mutation analysis
D2V1, multiclass
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                          91                            49
  CLUS_2                         105                            20
  CLUS_3                         183                            65
D2V3, multiclass
D2V4, multiclass
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         118                            29
  CLUS_2                          97                            36
  CLUS_3                          79                            38
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         119                            42
  CLUS_2                          71                            39
  CLUS_3                         104                            22
D2V7, multiclass
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         239                            97
  CLUS_2                         167                            38
  CLUS_3                         192                            95
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         131                            70
  CLUS_2                         298                           131
  CLUS_3                         205                            44
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         165                            39
  CLUS_2                         426                           190
  CLUS_3                          43                            16

Clustering(3) Variable = Amp Peak  3(1q44) mutation analysis
D3V1, multiclass
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        96                          44
  CLUS_2                        97                          28
  CLUS_3                       179                          69
D3V3, multiclass
D3V4, multiclass
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       109                          38
  CLUS_2                        95                          38
  CLUS_3                        84                          33
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       116                          45
  CLUS_2                        75                          35
  CLUS_3                        97                          29
D3V7, multiclass
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       237                          99
  CLUS_2                       155                          50
  CLUS_3                       205                          82
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       142                          59
  CLUS_2                       302                         127
  CLUS_3                       187                          62
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       152                          52
  CLUS_2                       437                         179
  CLUS_3                        42                          17

Clustering(4) Variable = Amp Peak  4(3p26.1) mutation analysis
D4V1, multiclass
D4V2, multiclass
        clus
vv       AMP PEAK  4(3P26.1) MUTATED AMP PEAK  4(3P26.1) WILD-TYPE
  CLUS_1                          21                           119
  CLUS_2                          35                            90
  CLUS_3                          69                           179
D4V3, multiclass
D4V4, multiclass
D4V5, multiclass
        clus
vv       AMP PEAK  4(3P26.1) MUTATED AMP PEAK  4(3P26.1) WILD-TYPE
  CLUS_1                          50                            97
  CLUS_2                          28                           105
  CLUS_3                          21                            96
D4V6, multiclass
        clus
vv       AMP PEAK  4(3P26.1) MUTATED AMP PEAK  4(3P26.1) WILD-TYPE
  CLUS_1                          45                           116
  CLUS_2                          16                            94
  CLUS_3                          38                            88
D4V7, multiclass
D4V8, multiclass
        clus
vv       AMP PEAK  4(3P26.1) MUTATED AMP PEAK  4(3P26.1) WILD-TYPE
  CLUS_1                          82                           254
  CLUS_2                          61                           144
  CLUS_3                          32                           255
D4V9, multiclass
        clus
vv       AMP PEAK  4(3P26.1) MUTATED AMP PEAK  4(3P26.1) WILD-TYPE
  CLUS_1                          23                           178
  CLUS_2                          72                           357
  CLUS_3                          82                           167
D4V10, multiclass
        clus
vv       AMP PEAK  4(3P26.1) MUTATED AMP PEAK  4(3P26.1) WILD-TYPE
  CLUS_1                          64                           140
  CLUS_2                          97                           519
  CLUS_3                          16                            43

Clustering(5) Variable = Amp Peak  5(3q26.32) mutation analysis
D5V1, multiclass
D5V2, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           27                            113
  CLUS_2                           71                             54
  CLUS_3                           80                            168
D5V3, multiclass
D5V4, multiclass
D5V5, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           76                             71
  CLUS_2                           35                             98
  CLUS_3                           28                             89
D5V6, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           48                            113
  CLUS_2                           25                             85
  CLUS_3                           66                             60
D5V7, multiclass
D5V8, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                          105                            231
  CLUS_2                          122                             83
  CLUS_3                           47                            240
D5V9, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           45                            156
  CLUS_2                          100                            329
  CLUS_3                          133                            116
D5V10, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                          121                             83
  CLUS_2                          136                            480
  CLUS_3                           21                             38

Clustering(6) Variable = Amp Peak  6(4q13.3) mutation analysis
D6V1, multiclass
D6V2, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                           9                           131
  CLUS_2                          29                            96
  CLUS_3                          45                           203
D6V3, multiclass
D6V4, multiclass
D6V5, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          32                           115
  CLUS_2                          15                           118
  CLUS_3                          16                           101
D6V6, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          26                           135
  CLUS_2                          14                            96
  CLUS_3                          23                           103
D6V7, multiclass
D6V8, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          58                           278
  CLUS_2                          53                           152
  CLUS_3                          26                           261
D6V9, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          26                           175
  CLUS_2                          55                           374
  CLUS_3                          59                           190
D6V10, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          57                           147
  CLUS_2                          71                           545
  CLUS_3                          12                            47

Clustering(7) Variable = Amp Peak  7(6p23) mutation analysis
D7V1, multiclass
D7V2, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        22                         118
  CLUS_2                        58                          67
  CLUS_3                        66                         182
D7V3, multiclass
D7V4, multiclass
D7V5, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        64                          83
  CLUS_2                        25                         108
  CLUS_3                        23                          94
D7V6, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        34                         127
  CLUS_2                        24                          86
  CLUS_3                        54                          72
D7V7, multiclass
D7V8, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        89                         247
  CLUS_2                        90                         115
  CLUS_3                        44                         243
D7V9, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        30                         171
  CLUS_2                        77                         352
  CLUS_3                       118                         131
D7V10, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        97                         107
  CLUS_2                       108                         508
  CLUS_3                        20                          39

Clustering(8) Variable = Amp Peak  8(6q21) mutation analysis
D8V1, multiclass
D8V2, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        11                         129
  CLUS_2                        50                          75
  CLUS_3                        43                         205
D8V3, multiclass
D8V4, multiclass
D8V5, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        54                          93
  CLUS_2                        12                         121
  CLUS_3                        16                         101
D8V6, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        20                         141
  CLUS_2                        15                          95
  CLUS_3                        47                          79
D8V7, multiclass
D8V8, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        52                         284
  CLUS_2                        83                         122
  CLUS_3                        20                         267
D8V9, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        24                         177
  CLUS_2                        37                         392
  CLUS_3                        96                         153
D8V10, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        88                         116
  CLUS_2                        53                         563
  CLUS_3                        16                          43

Clustering(9) Variable = Amp Peak  9(8p11.23) mutation analysis
D9V1, multiclass
D9V2, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           50                             90
  CLUS_2                           39                             86
  CLUS_3                          117                            131
D9V3, multiclass
D9V4, multiclass
D9V5, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           49                             98
  CLUS_2                           54                             79
  CLUS_3                           57                             60
D9V6, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           74                             87
  CLUS_2                           50                             60
  CLUS_3                           36                             90
D9V7, multiclass
D9V8, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                          159                            177
  CLUS_2                           65                            140
  CLUS_3                           99                            188
D9V9, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           67                            134
  CLUS_2                          177                            252
  CLUS_3                           90                            159
D9V10, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           69                            135
  CLUS_2                          250                            366
  CLUS_3                           15                             44

Clustering(10) Variable = Amp Peak 10(8p11.21) mutation analysis
D10V1, multiclass
D10V2, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                           45                             95
  CLUS_2                           52                             73
  CLUS_3                          112                            136
D10V3, multiclass
D10V4, multiclass
D10V5, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                           56                             91
  CLUS_2                           56                             77
  CLUS_3                           47                             70
D10V6, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                           69                             92
  CLUS_2                           41                             69
  CLUS_3                           49                             77
D10V7, multiclass
D10V8, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                          150                            186
  CLUS_2                           88                            117
  CLUS_3                           88                            199
D10V9, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                           67                            134
  CLUS_2                          162                            267
  CLUS_3                          111                            138
D10V10, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                           87                            117
  CLUS_2                          235                            381
  CLUS_3                           18                             41

Clustering(11) Variable = Amp Peak 11(8q24.21) mutation analysis
D11V1, multiclass
D11V2, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           73                             67
  CLUS_2                          104                             21
  CLUS_3                          174                             74
D11V3, multiclass
D11V4, multiclass
D11V5, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          125                             22
  CLUS_2                           72                             61
  CLUS_3                           76                             41
D11V6, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          102                             59
  CLUS_2                           63                             47
  CLUS_3                          108                             18
D11V7, multiclass
D11V8, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          224                            112
  CLUS_2                          172                             33
  CLUS_3                          143                            144
D11V9, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           98                            103
  CLUS_2                          245                            184
  CLUS_3                          221                             28
D11V10, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          179                             25
  CLUS_2                          339                            277
  CLUS_3                           46                             13

Clustering(12) Variable = Amp Peak 12(10p15.1) mutation analysis
D12V1, multiclass
D12V2, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                           24                            116
  CLUS_2                           81                             44
  CLUS_3                           56                            192
D12V3, multiclass
D12V4, multiclass
D12V5, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                           78                             69
  CLUS_2                           22                            111
  CLUS_3                           29                             88
D12V6, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                           30                            131
  CLUS_2                           26                             84
  CLUS_3                           73                             53
D12V7, multiclass
D12V8, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                           69                            267
  CLUS_2                          124                             81
  CLUS_3                           45                            242
D12V9, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                           43                            158
  CLUS_2                           66                            363
  CLUS_3                          137                            112
D12V10, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                          126                             78
  CLUS_2                           97                            519
  CLUS_3                           23                             36

Clustering(13) Variable = Amp Peak 13(10q22.3) mutation analysis
D13V1, multiclass
D13V2, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           15                            125
  CLUS_2                           26                             99
  CLUS_3                           43                            205
D13V3, multiclass
D13V4, multiclass
D13V5, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           38                            109
  CLUS_2                           14                            119
  CLUS_3                           17                            100
D13V6, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           22                            139
  CLUS_2                           15                             95
  CLUS_3                           32                             94
D13V7, multiclass
D13V8, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           53                            283
  CLUS_2                           47                            158
  CLUS_3                           24                            263
D13V9, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           17                            184
  CLUS_2                           51                            378
  CLUS_3                           59                            190
D13V10, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           41                            163
  CLUS_2                           70                            546
  CLUS_3                           16                             43

Clustering(14) Variable = Amp Peak 14(11p13) mutation analysis
D14V1, multiclass
D14V2, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         25                          115
  CLUS_2                         35                           90
  CLUS_3                         55                          193
D14V3, multiclass
D14V4, multiclass
D14V5, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         43                          104
  CLUS_2                         25                          108
  CLUS_3                         25                           92
D14V6, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         32                          129
  CLUS_2                         25                           85
  CLUS_3                         36                           90
D14V7, multiclass
D14V8, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         81                          255
  CLUS_2                         58                          147
  CLUS_3                         44                          243
D14V9, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         28                          173
  CLUS_2                         81                          348
  CLUS_3                         76                          173
D14V10, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         61                          143
  CLUS_2                        104                          512
  CLUS_3                         20                           39

Clustering(15) Variable = Amp Peak 15(11q13.3) mutation analysis
D15V1, multiclass
D15V2, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           57                             83
  CLUS_2                           41                             84
  CLUS_3                          116                            132
D15V3, multiclass
D15V4, multiclass
D15V5, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           61                             86
  CLUS_2                           57                             76
  CLUS_3                           48                             69
D15V6, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           76                             85
  CLUS_2                           45                             65
  CLUS_3                           45                             81
D15V7, multiclass
D15V8, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                          159                            177
  CLUS_2                           74                            131
  CLUS_3                           93                            194
D15V9, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           56                            145
  CLUS_2                          171                            258
  CLUS_3                          108                            141
D15V10, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           76                            128
  CLUS_2                          229                            387
  CLUS_3                           30                             29

Clustering(16) Variable = Amp Peak 16(11q14.1) mutation analysis
D16V1, multiclass
D16V2, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           35                            105
  CLUS_2                           45                             80
  CLUS_3                           66                            182
D16V3, multiclass
D16V4, multiclass
D16V5, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           50                             97
  CLUS_2                           31                            102
  CLUS_3                           34                             83
D16V6, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           41                            120
  CLUS_2                           30                             80
  CLUS_3                           44                             82
D16V7, multiclass
D16V8, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           93                            243
  CLUS_2                           74                            131
  CLUS_3                           53                            234
D16V9, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           34                            167
  CLUS_2                           96                            333
  CLUS_3                           94                            155
D16V10, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           67                            137
  CLUS_2                          133                            483
  CLUS_3                           24                             35

Clustering(17) Variable = Amp Peak 17(12p13.33) mutation analysis
D17V1, multiclass
D17V2, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            15                             125
  CLUS_2                            61                              64
  CLUS_3                            70                             178
D17V3, multiclass
D17V4, multiclass
D17V5, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            69                              78
  CLUS_2                            31                             102
  CLUS_3                            18                              99
D17V6, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            43                             118
  CLUS_2                            16                              94
  CLUS_3                            59                              67
D17V7, multiclass
D17V8, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            87                             249
  CLUS_2                            95                             110
  CLUS_3                            33                             254
D17V9, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            26                             175
  CLUS_2                            77                             352
  CLUS_3                           123                             126
D17V10, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                           104                             100
  CLUS_2                           107                             509
  CLUS_3                            15                              44

Clustering(18) Variable = Amp Peak 18(12q15) mutation analysis
D18V1, multiclass
D18V2, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         27                          113
  CLUS_2                         29                           96
  CLUS_3                         94                          154
D18V3, multiclass
D18V4, multiclass
D18V5, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         52                           95
  CLUS_2                         41                           92
  CLUS_3                         29                           88
D18V6, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         58                          103
  CLUS_2                         25                           85
  CLUS_3                         39                           87
D18V7, multiclass
D18V8, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                        123                          213
  CLUS_2                         49                          156
  CLUS_3                         51                          236
D18V9, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         21                          180
  CLUS_2                        119                          310
  CLUS_3                         85                          164
D18V10, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         49                          155
  CLUS_2                        155                          461
  CLUS_3                         21                           38

Clustering(19) Variable = Amp Peak 19(13q12.3) mutation analysis
D19V1, multiclass
D19V2, multiclass
        clus
vv       AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  CLUS_1                           14                            126
  CLUS_2                           25                            100
  CLUS_3                           42                            206
D19V3, multiclass
D19V4, multiclass
D19V5, multiclass
        clus
vv       AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  CLUS_1                           33                            114
  CLUS_2                           23                            110
  CLUS_3                           11                            106
D19V6, multiclass
        clus
vv       AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  CLUS_1                           27                            134
  CLUS_2                           13                             97
  CLUS_3                           27                             99
D19V7, multiclass
D19V8, multiclass
        clus
vv       AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  CLUS_1                           61                            275
  CLUS_2                           36                            169
  CLUS_3                           24                            263
D19V9, multiclass
        clus
vv       AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  CLUS_1                           12                            189
  CLUS_2                           55                            374
  CLUS_3                           55                            194
D19V10, multiclass
        clus
vv       AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  CLUS_1                           37                            167
  CLUS_2                           71                            545
  CLUS_3                           14                             45

Clustering(20) Variable = Amp Peak 20(13q34) mutation analysis
D20V1, multiclass
D20V2, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         12                          128
  CLUS_2                         47                           78
  CLUS_3                         37                          211
D20V3, multiclass
D20V4, multiclass
D20V5, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         48                           99
  CLUS_2                         22                          111
  CLUS_3                         11                          106
D20V6, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         25                          136
  CLUS_2                          9                          101
  CLUS_3                         47                           79
D20V7, multiclass
D20V8, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         46                          290
  CLUS_2                         74                          131
  CLUS_3                         23                          264
D20V9, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         24                          177
  CLUS_2                         43                          386
  CLUS_3                         87                          162
D20V10, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         81                          123
  CLUS_2                         60                          556
  CLUS_3                         13                           46

Clustering(21) Variable = Amp Peak 21(14q21.1) mutation analysis
D21V1, multiclass
D21V2, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           23                            117
  CLUS_2                           19                            106
  CLUS_3                           69                            179
D21V3, multiclass
D21V4, multiclass
D21V5, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           41                            106
  CLUS_2                           24                            109
  CLUS_3                           21                             96
D21V6, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           44                            117
  CLUS_2                           16                             94
  CLUS_3                           26                            100
D21V7, multiclass
D21V8, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           98                            238
  CLUS_2                           33                            172
  CLUS_3                           43                            244
D21V9, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           20                            181
  CLUS_2                           93                            336
  CLUS_3                           61                            188
D21V10, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           37                            167
  CLUS_2                          117                            499
  CLUS_3                           20                             39

Clustering(22) Variable = Amp Peak 22(15q26.3) mutation analysis
D22V1, multiclass
D22V2, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           20                            120
  CLUS_2                           37                             88
  CLUS_3                           46                            202
D22V3, multiclass
D22V4, multiclass
D22V5, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           47                            100
  CLUS_2                           18                            115
  CLUS_3                           17                            100
D22V6, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           31                            130
  CLUS_2                           16                             94
  CLUS_3                           35                             91
D22V7, multiclass
D22V8, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           59                            277
  CLUS_2                           61                            144
  CLUS_3                           34                            253
D22V9, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           26                            175
  CLUS_2                           58                            371
  CLUS_3                           74                            175
D22V10, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           68                            136
  CLUS_2                           78                            538
  CLUS_3                           12                             47

Clustering(23) Variable = Amp Peak 23(17q12) mutation analysis
D23V1, multiclass
D23V2, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         28                          112
  CLUS_2                         39                           86
  CLUS_3                         98                          150
D23V3, multiclass
D23V4, multiclass
D23V5, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         58                           89
  CLUS_2                         40                           93
  CLUS_3                         30                           87
D23V6, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         46                          115
  CLUS_2                         28                           82
  CLUS_3                         54                           72
D23V7, multiclass
D23V8, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                        139                          197
  CLUS_2                         69                          136
  CLUS_3                         68                          219
D23V9, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         50                          151
  CLUS_2                        135                          294
  CLUS_3                        101                          148
D23V10, multiclass
        clus
vv       AMP PEAK 23(17Q12) MUTATED AMP PEAK 23(17Q12) WILD-TYPE
  CLUS_1                         66                          138
  CLUS_2                        187                          429
  CLUS_3                         33                           26

Clustering(24) Variable = Amp Peak 24(17q23.1) mutation analysis
D24V1, multiclass
D24V2, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           44                             96
  CLUS_2                           48                             77
  CLUS_3                          123                            125
D24V3, multiclass
D24V4, multiclass
D24V5, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           69                             78
  CLUS_2                           54                             79
  CLUS_3                           42                             75
D24V6, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           74                             87
  CLUS_2                           43                             67
  CLUS_3                           48                             78
D24V7, multiclass
D24V8, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                          172                            164
  CLUS_2                           81                            124
  CLUS_3                           98                            189
D24V9, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           60                            141
  CLUS_2                          170                            259
  CLUS_3                          133                            116
D24V10, multiclass
        clus
vv       AMP PEAK 24(17Q23.1) MUTATED AMP PEAK 24(17Q23.1) WILD-TYPE
  CLUS_1                           94                            110
  CLUS_2                          239                            377
  CLUS_3                           30                             29

Clustering(25) Variable = Amp Peak 25(19q12) mutation analysis
D25V1, multiclass
D25V2, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         22                          118
  CLUS_2                         64                           61
  CLUS_3                         54                          194
D25V3, multiclass
D25V4, multiclass
D25V5, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         64                           83
  CLUS_2                         23                          110
  CLUS_3                         23                           94
D25V6, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         29                          132
  CLUS_2                         24                           86
  CLUS_3                         57                           69
D25V7, multiclass
D25V8, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         67                          269
  CLUS_2                        100                          105
  CLUS_3                         47                          240
D25V9, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                         43                          158
  CLUS_2                         76                          353
  CLUS_3                        108                          141
D25V10, multiclass
        clus
vv       AMP PEAK 25(19Q12) MUTATED AMP PEAK 25(19Q12) WILD-TYPE
  CLUS_1                        101                          103
  CLUS_2                        108                          508
  CLUS_3                         18                           41

Clustering(26) Variable = Amp Peak 26(19q13.42) mutation analysis
D26V1, multiclass
D26V2, multiclass
        clus
vv       AMP PEAK 26(19Q13.42) MUTATED AMP PEAK 26(19Q13.42) WILD-TYPE
  CLUS_1                            29                             111
  CLUS_2                            45                              80
  CLUS_3                            67                             181
D26V3, multiclass
D26V4, multiclass
D26V5, multiclass
        clus
vv       AMP PEAK 26(19Q13.42) MUTATED AMP PEAK 26(19Q13.42) WILD-TYPE
  CLUS_1                            56                              91
  CLUS_2                            29                             104
  CLUS_3                            25                              92
D26V6, multiclass
        clus
vv       AMP PEAK 26(19Q13.42) MUTATED AMP PEAK 26(19Q13.42) WILD-TYPE
  CLUS_1                            40                             121
  CLUS_2                            25                              85
  CLUS_3                            45                              81
D26V7, multiclass
D26V8, multiclass
        clus
vv       AMP PEAK 26(19Q13.42) MUTATED AMP PEAK 26(19Q13.42) WILD-TYPE
  CLUS_1                            92                             244
  CLUS_2                            68                             137
  CLUS_3                            61                             226
D26V9, multiclass
        clus
vv       AMP PEAK 26(19Q13.42) MUTATED AMP PEAK 26(19Q13.42) WILD-TYPE
  CLUS_1                            36                             165
  CLUS_2                           102                             327
  CLUS_3                            91                             158
D26V10, multiclass
        clus
vv       AMP PEAK 26(19Q13.42) MUTATED AMP PEAK 26(19Q13.42) WILD-TYPE
  CLUS_1                            71                             133
  CLUS_2                           135                             481
  CLUS_3                            23                              36

Clustering(27) Variable = Amp Peak 27(20q13.2) mutation analysis
D27V1, multiclass
D27V2, multiclass
        clus
vv       AMP PEAK 27(20Q13.2) MUTATED AMP PEAK 27(20Q13.2) WILD-TYPE
  CLUS_1                           55                             85
  CLUS_2                           69                             56
  CLUS_3                          150                             98
D27V3, multiclass
D27V4, multiclass
D27V5, multiclass
        clus
vv       AMP PEAK 27(20Q13.2) MUTATED AMP PEAK 27(20Q13.2) WILD-TYPE
  CLUS_1                           99                             48
  CLUS_2                           67                             66
  CLUS_3                           53                             64
D27V6, multiclass
        clus
vv       AMP PEAK 27(20Q13.2) MUTATED AMP PEAK 27(20Q13.2) WILD-TYPE
  CLUS_1                           94                             67
  CLUS_2                           48                             62
  CLUS_3                           77                             49
D27V7, multiclass
D27V8, multiclass
        clus
vv       AMP PEAK 27(20Q13.2) MUTATED AMP PEAK 27(20Q13.2) WILD-TYPE
  CLUS_1                          211                            125
  CLUS_2                          114                             91
  CLUS_3                          113                            174
D27V9, multiclass
        clus
vv       AMP PEAK 27(20Q13.2) MUTATED AMP PEAK 27(20Q13.2) WILD-TYPE
  CLUS_1                           67                            134
  CLUS_2                          220                            209
  CLUS_3                          165                             84
D27V10, multiclass
        clus
vv       AMP PEAK 27(20Q13.2) MUTATED AMP PEAK 27(20Q13.2) WILD-TYPE
  CLUS_1                          117                             87
  CLUS_2                          286                            330
  CLUS_3                           49                             10

Clustering(28) Variable = Del Peak  1(1p36.13) mutation analysis
D28V1, multiclass
D28V2, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           43                             97
  CLUS_2                           50                             75
  CLUS_3                          125                            123
D28V3, multiclass
D28V4, multiclass
D28V5, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           76                             71
  CLUS_2                           58                             75
  CLUS_3                           38                             79
D28V6, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           73                             88
  CLUS_2                           38                             72
  CLUS_3                           61                             65
D28V7, multiclass
D28V8, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          185                            151
  CLUS_2                           80                            125
  CLUS_3                           84                            203
D28V9, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           45                            156
  CLUS_2                          181                            248
  CLUS_3                          135                            114
D28V10, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           84                            120
  CLUS_2                          245                            371
  CLUS_3                           32                             27

Clustering(29) Variable = Del Peak  2(1p22.1) mutation analysis
D29V1, multiclass
D29V2, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          40                           100
  CLUS_2                          30                            95
  CLUS_3                         110                           138
D29V3, multiclass
D29V4, multiclass
D29V5, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          54                            93
  CLUS_2                          52                            81
  CLUS_3                          28                            89
D29V6, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          65                            96
  CLUS_2                          29                            81
  CLUS_3                          40                            86
D29V7, multiclass
D29V8, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                         156                           180
  CLUS_2                          49                           156
  CLUS_3                          81                           206
D29V9, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          49                           152
  CLUS_2                         153                           276
  CLUS_3                          91                           158
D29V10, multiclass
        clus
vv       DEL PEAK  2(1P22.1) MUTATED DEL PEAK  2(1P22.1) WILD-TYPE
  CLUS_1                          52                           152
  CLUS_2                         213                           403
  CLUS_3                          28                            31

Clustering(30) Variable = Del Peak  3(2q37.3) mutation analysis
D30V1, multiclass
D30V2, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          20                           120
  CLUS_2                          58                            67
  CLUS_3                          82                           166
D30V3, multiclass
D30V4, multiclass
D30V5, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          70                            77
  CLUS_2                          38                            95
  CLUS_3                          16                           101
D30V6, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          56                           105
  CLUS_2                          13                            97
  CLUS_3                          55                            71
D30V7, multiclass
D30V8, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                         110                           226
  CLUS_2                          86                           119
  CLUS_3                          50                           237
D30V9, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          31                           170
  CLUS_2                         111                           318
  CLUS_3                         114                           135
D30V10, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          84                           120
  CLUS_2                         145                           471
  CLUS_3                          27                            32

Clustering(31) Variable = Del Peak  4(3p14.3) mutation analysis
D31V1, multiclass
D31V2, multiclass
        clus
vv       DEL PEAK  4(3P14.3) MUTATED DEL PEAK  4(3P14.3) WILD-TYPE
  CLUS_1                          36                           104
  CLUS_2                          67                            58
  CLUS_3                          60                           188
D31V3, multiclass
D31V4, multiclass
D31V5, multiclass
        clus
vv       DEL PEAK  4(3P14.3) MUTATED DEL PEAK  4(3P14.3) WILD-TYPE
  CLUS_1                          79                            68
  CLUS_2                          25                           108
  CLUS_3                          32                            85
D31V6, multiclass
        clus
vv       DEL PEAK  4(3P14.3) MUTATED DEL PEAK  4(3P14.3) WILD-TYPE
  CLUS_1                          40                           121
  CLUS_2                          31                            79
  CLUS_3                          65                            61
D31V7, multiclass
D31V8, multiclass
        clus
vv       DEL PEAK  4(3P14.3) MUTATED DEL PEAK  4(3P14.3) WILD-TYPE
  CLUS_1                          90                           246
  CLUS_2                         108                            97
  CLUS_3                          59                           228
D31V9, multiclass
        clus
vv       DEL PEAK  4(3P14.3) MUTATED DEL PEAK  4(3P14.3) WILD-TYPE
  CLUS_1                          44                           157
  CLUS_2                          88                           341
  CLUS_3                         135                           114
D31V10, multiclass
        clus
vv       DEL PEAK  4(3P14.3) MUTATED DEL PEAK  4(3P14.3) WILD-TYPE
  CLUS_1                         105                            99
  CLUS_2                         137                           479
  CLUS_3                          25                            34

Clustering(32) Variable = Del Peak  5(4p16.3) mutation analysis
D32V1, multiclass
D32V2, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          24                           116
  CLUS_2                          72                            53
  CLUS_3                          71                           177
D32V3, multiclass
D32V4, multiclass
D32V5, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          75                            72
  CLUS_2                          39                            94
  CLUS_3                          24                            93
D32V6, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          48                           113
  CLUS_2                          24                            86
  CLUS_3                          66                            60
D32V7, multiclass
D32V8, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          97                           239
  CLUS_2                         116                            89
  CLUS_3                          45                           242
D32V9, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          40                           161
  CLUS_2                         103                           326
  CLUS_3                         127                           122
D32V10, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                         108                            96
  CLUS_2                         138                           478
  CLUS_3                          24                            35

Clustering(33) Variable = Del Peak  6(4q35.2) mutation analysis
D33V1, multiclass
D33V2, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          29                           111
  CLUS_2                          63                            62
  CLUS_3                          73                           175
D33V3, multiclass
D33V4, multiclass
D33V5, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          78                            69
  CLUS_2                          35                            98
  CLUS_3                          24                            93
D33V6, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          46                           115
  CLUS_2                          25                            85
  CLUS_3                          66                            60
D33V7, multiclass
D33V8, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                         101                           235
  CLUS_2                         109                            96
  CLUS_3                          49                           238
D33V9, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          38                           163
  CLUS_2                         104                           325
  CLUS_3                         128                           121
D33V10, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                         111                            93
  CLUS_2                         135                           481
  CLUS_3                          24                            35

Clustering(34) Variable = Del Peak  7(5q11.2) mutation analysis
D34V1, multiclass
D34V2, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          14                           126
  CLUS_2                          79                            46
  CLUS_3                          41                           207
D34V3, multiclass
D34V4, multiclass
D34V5, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          78                            69
  CLUS_2                          13                           120
  CLUS_3                          23                            94
D34V6, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          26                           135
  CLUS_2                          13                            97
  CLUS_3                          75                            51
D34V7, multiclass
D34V8, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          61                           275
  CLUS_2                         132                            73
  CLUS_3                          25                           262
D34V9, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          28                           173
  CLUS_2                          49                           380
  CLUS_3                         144                           105
D34V10, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                         134                            70
  CLUS_2                          70                           546
  CLUS_3                          17                            42

Clustering(35) Variable = Del Peak  8(5q21.3) mutation analysis
D35V1, multiclass
D35V2, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          12                           128
  CLUS_2                          80                            45
  CLUS_3                          41                           207
D35V3, multiclass
D35V4, multiclass
D35V5, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          76                            71
  CLUS_2                          13                           120
  CLUS_3                          23                            94
D35V6, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          26                           135
  CLUS_2                          15                            95
  CLUS_3                          71                            55
D35V7, multiclass
D35V8, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          51                           285
  CLUS_2                         133                            72
  CLUS_3                          24                           263
D35V9, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          27                           174
  CLUS_2                          46                           383
  CLUS_3                         141                           108
D35V10, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                         136                            68
  CLUS_2                          63                           553
  CLUS_3                          15                            44

Clustering(36) Variable = Del Peak  9(6p25.3) mutation analysis
D36V1, multiclass
D36V2, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          24                           116
  CLUS_2                          20                           105
  CLUS_3                          51                           197
D36V3, multiclass
D36V4, multiclass
D36V5, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          34                           113
  CLUS_2                          25                           108
  CLUS_3                          20                            97
D36V6, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          36                           125
  CLUS_2                          19                            91
  CLUS_3                          24                           102
D36V7, multiclass
D36V8, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          78                           258
  CLUS_2                          37                           168
  CLUS_3                          38                           249
D36V9, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          27                           174
  CLUS_2                          87                           342
  CLUS_3                          54                           195
D36V10, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          41                           163
  CLUS_2                         110                           506
  CLUS_3                          17                            42

Clustering(37) Variable = Del Peak 10(6q15) mutation analysis
D37V1, multiclass
D37V2, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        49                          91
  CLUS_2                        26                          99
  CLUS_3                        97                         151
D37V3, multiclass
D37V4, multiclass
D37V5, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        44                         103
  CLUS_2                        49                          84
  CLUS_3                        41                          76
D37V6, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        61                         100
  CLUS_2                        40                          70
  CLUS_3                        33                          93
D37V7, multiclass
D37V8, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                       143                         193
  CLUS_2                        50                         155
  CLUS_3                        87                         200
D37V9, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        55                         146
  CLUS_2                       160                         269
  CLUS_3                        78                         171
D37V10, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        47                         157
  CLUS_2                       226                         390
  CLUS_3                        20                          39

Clustering(38) Variable = Del Peak 11(6q27) mutation analysis
D38V1, multiclass
D38V2, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        49                          91
  CLUS_2                        41                          84
  CLUS_3                        94                         154
D38V3, multiclass
D38V4, multiclass
D38V5, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        63                          84
  CLUS_2                        44                          89
  CLUS_3                        37                          80
D38V6, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        61                         100
  CLUS_2                        37                          73
  CLUS_3                        46                          80
D38V7, multiclass
D38V8, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                       134                         202
  CLUS_2                        73                         132
  CLUS_3                        82                         205
D38V9, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        62                         139
  CLUS_2                       145                         284
  CLUS_3                        98                         151
D38V10, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        73                         131
  CLUS_2                       209                         407
  CLUS_3                        23                          36

Clustering(39) Variable = Del Peak 12(7p22.3) mutation analysis
D39V1, multiclass
D39V2, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                           8                           132
  CLUS_2                          27                            98
  CLUS_3                          40                           208
D39V3, multiclass
D39V4, multiclass
D39V5, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          29                           118
  CLUS_2                          15                           118
  CLUS_3                          10                           107
D39V6, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          19                           142
  CLUS_2                           8                           102
  CLUS_3                          27                            99
D39V7, multiclass
D39V8, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          55                           281
  CLUS_2                          46                           159
  CLUS_3                          14                           273
D39V9, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                           9                           192
  CLUS_2                          44                           385
  CLUS_3                          61                           188
D39V10, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          51                           153
  CLUS_2                          51                           565
  CLUS_3                          12                            47

Clustering(40) Variable = Del Peak 13(7q36.1) mutation analysis
D40V1, multiclass
D40V2, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          18                           122
  CLUS_2                          29                            96
  CLUS_3                          55                           193
D40V3, multiclass
D40V4, multiclass
D40V5, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          31                           116
  CLUS_2                          23                           110
  CLUS_3                          19                            98
D40V6, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          24                           137
  CLUS_2                          17                            93
  CLUS_3                          32                            94
D40V7, multiclass
D40V8, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          85                           251
  CLUS_2                          50                           155
  CLUS_3                          34                           253
D40V9, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          22                           179
  CLUS_2                          65                           364
  CLUS_3                          80                           169
D40V10, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          55                           149
  CLUS_2                          90                           526
  CLUS_3                          22                            37

Clustering(41) Variable = Del Peak 14(8p23.2) mutation analysis
D41V1, multiclass
D41V2, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          57                            83
  CLUS_2                          86                            39
  CLUS_3                         134                           114
D41V3, multiclass
D41V4, multiclass
D41V5, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          95                            52
  CLUS_2                          62                            71
  CLUS_3                          68                            49
D41V6, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          82                            79
  CLUS_2                          60                            50
  CLUS_3                          83                            43
D41V7, multiclass
D41V8, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         195                           141
  CLUS_2                         138                            67
  CLUS_3                         110                           177
D41V9, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          86                           115
  CLUS_2                         208                           221
  CLUS_3                         168                            81
D41V10, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         143                            61
  CLUS_2                         282                           334
  CLUS_3                          37                            22

Clustering(42) Variable = Del Peak 15(8p11.21) mutation analysis
D42V1, multiclass
D42V2, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           19                            121
  CLUS_2                           35                             90
  CLUS_3                           48                            200
D42V3, multiclass
D42V4, multiclass
D42V5, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           40                            107
  CLUS_2                           20                            113
  CLUS_3                           25                             92
D42V6, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           25                            136
  CLUS_2                           23                             87
  CLUS_3                           37                             89
D42V7, multiclass
D42V8, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           68                            268
  CLUS_2                           56                            149
  CLUS_3                           37                            250
D42V9, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           30                            171
  CLUS_2                           78                            351
  CLUS_3                           62                            187
D42V10, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           57                            147
  CLUS_2                           93                            523
  CLUS_3                           20                             39

Clustering(43) Variable = Del Peak 16(9p21.3) mutation analysis
D43V1, multiclass
D43V2, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          35                           105
  CLUS_2                          43                            82
  CLUS_3                         109                           139
D43V3, multiclass
D43V4, multiclass
D43V5, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          71                            76
  CLUS_2                          41                            92
  CLUS_3                          37                            80
D43V6, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          62                            99
  CLUS_2                          36                            74
  CLUS_3                          51                            75
D43V7, multiclass
D43V8, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                         146                           190
  CLUS_2                          81                           124
  CLUS_3                          61                           226
D43V9, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          35                           166
  CLUS_2                         144                           285
  CLUS_3                         114                           135
D43V10, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          86                           118
  CLUS_2                         178                           438
  CLUS_3                          29                            30

Clustering(44) Variable = Del Peak 17(9q21.11) mutation analysis
D44V1, multiclass
D44V2, multiclass
        clus
vv       DEL PEAK 17(9Q21.11) MUTATED DEL PEAK 17(9Q21.11) WILD-TYPE
  CLUS_1                           24                            116
  CLUS_2                           47                             78
  CLUS_3                           81                            167
D44V3, multiclass
D44V4, multiclass
D44V5, multiclass
        clus
vv       DEL PEAK 17(9Q21.11) MUTATED DEL PEAK 17(9Q21.11) WILD-TYPE
  CLUS_1                           65                             82
  CLUS_2                           32                            101
  CLUS_3                           22                             95
D44V6, multiclass
        clus
vv       DEL PEAK 17(9Q21.11) MUTATED DEL PEAK 17(9Q21.11) WILD-TYPE
  CLUS_1                           46                            115
  CLUS_2                           23                             87
  CLUS_3                           50                             76
D44V7, multiclass
D44V8, multiclass
        clus
vv       DEL PEAK 17(9Q21.11) MUTATED DEL PEAK 17(9Q21.11) WILD-TYPE
  CLUS_1                          104                            232
  CLUS_2                           75                            130
  CLUS_3                           50                            237
D44V9, multiclass
        clus
vv       DEL PEAK 17(9Q21.11) MUTATED DEL PEAK 17(9Q21.11) WILD-TYPE
  CLUS_1                           31                            170
  CLUS_2                          103                            326
  CLUS_3                          100                            149
D44V10, multiclass
        clus
vv       DEL PEAK 17(9Q21.11) MUTATED DEL PEAK 17(9Q21.11) WILD-TYPE
  CLUS_1                           88                            116
  CLUS_2                          126                            490
  CLUS_3                           20                             39

Clustering(45) Variable = Del Peak 18(10q23.31) mutation analysis
D45V1, multiclass
D45V2, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            26                             114
  CLUS_2                            53                              72
  CLUS_3                            67                             181
D45V3, multiclass
D45V4, multiclass
D45V5, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            67                              80
  CLUS_2                            30                             103
  CLUS_3                            19                              98
D45V6, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            45                             116
  CLUS_2                            18                              92
  CLUS_3                            53                              73
D45V7, multiclass
D45V8, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            97                             239
  CLUS_2                            92                             113
  CLUS_3                            55                             232
D45V9, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            41                             160
  CLUS_2                           101                             328
  CLUS_3                           109                             140
D45V10, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            94                             110
  CLUS_2                           141                             475
  CLUS_3                            16                              43

Clustering(46) Variable = Del Peak 19(10q26.3) mutation analysis
D46V1, multiclass
D46V2, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           22                            118
  CLUS_2                           59                             66
  CLUS_3                           72                            176
D46V3, multiclass
D46V4, multiclass
D46V5, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           72                             75
  CLUS_2                           27                            106
  CLUS_3                           24                             93
D46V6, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           45                            116
  CLUS_2                           18                             92
  CLUS_3                           60                             66
D46V7, multiclass
D46V8, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                          100                            236
  CLUS_2                          100                            105
  CLUS_3                           47                            240
D46V9, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           39                            162
  CLUS_2                           95                            334
  CLUS_3                          118                            131
D46V10, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           96                            108
  CLUS_2                          132                            484
  CLUS_3                           24                             35

Clustering(47) Variable = Del Peak 20(11p15.5) mutation analysis
D47V1, multiclass
D47V2, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           29                            111
  CLUS_2                           62                             63
  CLUS_3                           60                            188
D47V3, multiclass
D47V4, multiclass
D47V5, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           76                             71
  CLUS_2                           26                            107
  CLUS_3                           25                             92
D47V6, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           38                            123
  CLUS_2                           26                             84
  CLUS_3                           63                             63
D47V7, multiclass
D47V8, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           84                            252
  CLUS_2                          104                            101
  CLUS_3                           55                            232
D47V9, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           38                            163
  CLUS_2                           88                            341
  CLUS_3                          125                            124
D47V10, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                          106                             98
  CLUS_2                          123                            493
  CLUS_3                           22                             37

Clustering(48) Variable = Del Peak 21(11q13.1) mutation analysis
D48V1, multiclass
D48V2, multiclass
        clus
vv       DEL PEAK 21(11Q13.1) MUTATED DEL PEAK 21(11Q13.1) WILD-TYPE
  CLUS_1                           25                            115
  CLUS_2                           23                            102
  CLUS_3                           67                            181
D48V3, multiclass
D48V4, multiclass
D48V5, multiclass
        clus
vv       DEL PEAK 21(11Q13.1) MUTATED DEL PEAK 21(11Q13.1) WILD-TYPE
  CLUS_1                           33                            114
  CLUS_2                           33                            100
  CLUS_3                           20                             97
D48V6, multiclass
        clus
vv       DEL PEAK 21(11Q13.1) MUTATED DEL PEAK 21(11Q13.1) WILD-TYPE
  CLUS_1                           39                            122
  CLUS_2                           19                             91
  CLUS_3                           28                             98
D48V7, multiclass
D48V8, multiclass
        clus
vv       DEL PEAK 21(11Q13.1) MUTATED DEL PEAK 21(11Q13.1) WILD-TYPE
  CLUS_1                           93                            243
  CLUS_2                           33                            172
  CLUS_3                           54                            233
D48V9, multiclass
        clus
vv       DEL PEAK 21(11Q13.1) MUTATED DEL PEAK 21(11Q13.1) WILD-TYPE
  CLUS_1                           36                            165
  CLUS_2                           99                            330
  CLUS_3                           54                            195
D48V10, multiclass
        clus
vv       DEL PEAK 21(11Q13.1) MUTATED DEL PEAK 21(11Q13.1) WILD-TYPE
  CLUS_1                           35                            169
  CLUS_2                          140                            476
  CLUS_3                           14                             45

Clustering(49) Variable = Del Peak 22(11q23.2) mutation analysis
D49V1, multiclass
D49V2, multiclass
        clus
vv       DEL PEAK 22(11Q23.2) MUTATED DEL PEAK 22(11Q23.2) WILD-TYPE
  CLUS_1                           73                             67
  CLUS_2                           52                             73
  CLUS_3                          139                            109
D49V3, multiclass
D49V4, multiclass
D49V5, multiclass
        clus
vv       DEL PEAK 22(11Q23.2) MUTATED DEL PEAK 22(11Q23.2) WILD-TYPE
  CLUS_1                           75                             72
  CLUS_2                           69                             64
  CLUS_3                           59                             58
D49V6, multiclass
        clus
vv       DEL PEAK 22(11Q23.2) MUTATED DEL PEAK 22(11Q23.2) WILD-TYPE
  CLUS_1                           87                             74
  CLUS_2                           57                             53
  CLUS_3                           59                             67
D49V7, multiclass
D49V8, multiclass
        clus
vv       DEL PEAK 22(11Q23.2) MUTATED DEL PEAK 22(11Q23.2) WILD-TYPE
  CLUS_1                          192                            144
  CLUS_2                           83                            122
  CLUS_3                          140                            147
D49V9, multiclass
        clus
vv       DEL PEAK 22(11Q23.2) MUTATED DEL PEAK 22(11Q23.2) WILD-TYPE
  CLUS_1                           80                            121
  CLUS_2                          232                            197
  CLUS_3                          120                            129
D49V10, multiclass
        clus
vv       DEL PEAK 22(11Q23.2) MUTATED DEL PEAK 22(11Q23.2) WILD-TYPE
  CLUS_1                           81                            123
  CLUS_2                          314                            302
  CLUS_3                           37                             22

Clustering(50) Variable = Del Peak 23(11q25) mutation analysis
D50V1, multiclass
D50V2, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         68                           72
  CLUS_2                         61                           64
  CLUS_3                        124                          124
D50V3, multiclass
D50V4, multiclass
D50V5, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         81                           66
  CLUS_2                         63                           70
  CLUS_3                         50                           67
D50V6, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         81                           80
  CLUS_2                         50                           60
  CLUS_3                         63                           63
D50V7, multiclass
D50V8, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                        170                          166
  CLUS_2                         88                          117
  CLUS_3                        131                          156
D50V9, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         80                          121
  CLUS_2                        201                          228
  CLUS_3                        125                          124
D50V10, multiclass
        clus
vv       DEL PEAK 23(11Q25) MUTATED DEL PEAK 23(11Q25) WILD-TYPE
  CLUS_1                         94                          110
  CLUS_2                        280                          336
  CLUS_3                         32                           27

Clustering(51) Variable = Del Peak 24(12p13.1) mutation analysis
D51V1, multiclass
D51V2, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           21                            119
  CLUS_2                           30                             95
  CLUS_3                           42                            206
D51V3, multiclass
D51V4, multiclass
D51V5, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           33                            114
  CLUS_2                           22                            111
  CLUS_3                           17                            100
D51V6, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           25                            136
  CLUS_2                           15                             95
  CLUS_3                           32                             94
D51V7, multiclass
D51V8, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           61                            275
  CLUS_2                           51                            154
  CLUS_3                           37                            250
D51V9, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           30                            171
  CLUS_2                           60                            369
  CLUS_3                           63                            186
D51V10, multiclass
        clus
vv       DEL PEAK 24(12P13.1) MUTATED DEL PEAK 24(12P13.1) WILD-TYPE
  CLUS_1                           50                            154
  CLUS_2                           85                            531
  CLUS_3                           18                             41

Clustering(52) Variable = Del Peak 25(12q24.21) mutation analysis
D52V1, multiclass
D52V2, multiclass
        clus
vv       DEL PEAK 25(12Q24.21) MUTATED DEL PEAK 25(12Q24.21) WILD-TYPE
  CLUS_1                            14                             126
  CLUS_2                            51                              74
  CLUS_3                            35                             213
D52V3, multiclass
D52V4, multiclass
D52V5, multiclass
        clus
vv       DEL PEAK 25(12Q24.21) MUTATED DEL PEAK 25(12Q24.21) WILD-TYPE
  CLUS_1                            44                             103
  CLUS_2                            14                             119
  CLUS_3                            21                              96
D52V6, multiclass
        clus
vv       DEL PEAK 25(12Q24.21) MUTATED DEL PEAK 25(12Q24.21) WILD-TYPE
  CLUS_1                            22                             139
  CLUS_2                            12                              98
  CLUS_3                            45                              81
D52V7, multiclass
D52V8, multiclass
        clus
vv       DEL PEAK 25(12Q24.21) MUTATED DEL PEAK 25(12Q24.21) WILD-TYPE
  CLUS_1                            45                             291
  CLUS_2                            76                             129
  CLUS_3                            29                             258
D52V9, multiclass
        clus
vv       DEL PEAK 25(12Q24.21) MUTATED DEL PEAK 25(12Q24.21) WILD-TYPE
  CLUS_1                            30                             171
  CLUS_2                            51                             378
  CLUS_3                            83                             166
D52V10, multiclass
        clus
vv       DEL PEAK 25(12Q24.21) MUTATED DEL PEAK 25(12Q24.21) WILD-TYPE
  CLUS_1                            71                             133
  CLUS_2                            75                             541
  CLUS_3                            18                              41

Clustering(53) Variable = Del Peak 26(13q14.2) mutation analysis
D53V1, multiclass
D53V2, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           46                             94
  CLUS_2                           75                             50
  CLUS_3                          120                            128
D53V3, multiclass
D53V4, multiclass
D53V5, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           74                             73
  CLUS_2                           58                             75
  CLUS_3                           55                             62
D53V6, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           71                             90
  CLUS_2                           47                             63
  CLUS_3                           69                             57
D53V7, multiclass
D53V8, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                          173                            163
  CLUS_2                          118                             87
  CLUS_3                           95                            192
D53V9, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                           61                            140
  CLUS_2                          193                            236
  CLUS_3                          146                            103
D53V10, multiclass
        clus
vv       DEL PEAK 26(13Q14.2) MUTATED DEL PEAK 26(13Q14.2) WILD-TYPE
  CLUS_1                          114                             90
  CLUS_2                          250                            366
  CLUS_3                           36                             23

Clustering(54) Variable = Del Peak 27(14q24.3) mutation analysis
D54V1, multiclass
D54V2, multiclass
        clus
vv       DEL PEAK 27(14Q24.3) MUTATED DEL PEAK 27(14Q24.3) WILD-TYPE
  CLUS_1                           33                            107
  CLUS_2                           69                             56
  CLUS_3                           67                            181
D54V3, multiclass
D54V4, multiclass
D54V5, multiclass
        clus
vv       DEL PEAK 27(14Q24.3) MUTATED DEL PEAK 27(14Q24.3) WILD-TYPE
  CLUS_1                           74                             73
  CLUS_2                           29                            104
  CLUS_3                           31                             86
D54V6, multiclass
        clus
vv       DEL PEAK 27(14Q24.3) MUTATED DEL PEAK 27(14Q24.3) WILD-TYPE
  CLUS_1                           45                            116
  CLUS_2                           25                             85
  CLUS_3                           64                             62
D54V7, multiclass
D54V8, multiclass
        clus
vv       DEL PEAK 27(14Q24.3) MUTATED DEL PEAK 27(14Q24.3) WILD-TYPE
  CLUS_1                          105                            231
  CLUS_2                          108                             97
  CLUS_3                           56                            231
D54V9, multiclass
        clus
vv       DEL PEAK 27(14Q24.3) MUTATED DEL PEAK 27(14Q24.3) WILD-TYPE
  CLUS_1                           46                            155
  CLUS_2                           98                            331
  CLUS_3                          135                            114
D54V10, multiclass
        clus
vv       DEL PEAK 27(14Q24.3) MUTATED DEL PEAK 27(14Q24.3) WILD-TYPE
  CLUS_1                          119                             85
  CLUS_2                          137                            479
  CLUS_3                           23                             36

Clustering(55) Variable = Del Peak 28(15q13.1) mutation analysis
D55V1, multiclass
D55V2, multiclass
        clus
vv       DEL PEAK 28(15Q13.1) MUTATED DEL PEAK 28(15Q13.1) WILD-TYPE
  CLUS_1                           29                            111
  CLUS_2                           68                             57
  CLUS_3                           90                            158
D55V3, multiclass
D55V4, multiclass
D55V5, multiclass
        clus
vv       DEL PEAK 28(15Q13.1) MUTATED DEL PEAK 28(15Q13.1) WILD-TYPE
  CLUS_1                           76                             71
  CLUS_2                           39                             94
  CLUS_3                           38                             79
D55V6, multiclass
        clus
vv       DEL PEAK 28(15Q13.1) MUTATED DEL PEAK 28(15Q13.1) WILD-TYPE
  CLUS_1                           54                            107
  CLUS_2                           30                             80
  CLUS_3                           69                             57
D55V7, multiclass
D55V8, multiclass
        clus
vv       DEL PEAK 28(15Q13.1) MUTATED DEL PEAK 28(15Q13.1) WILD-TYPE
  CLUS_1                          114                            222
  CLUS_2                          115                             90
  CLUS_3                           59                            228
D55V9, multiclass
        clus
vv       DEL PEAK 28(15Q13.1) MUTATED DEL PEAK 28(15Q13.1) WILD-TYPE
  CLUS_1                           40                            161
  CLUS_2                          124                            305
  CLUS_3                          137                            112
D55V10, multiclass
        clus
vv       DEL PEAK 28(15Q13.1) MUTATED DEL PEAK 28(15Q13.1) WILD-TYPE
  CLUS_1                          119                             85
  CLUS_2                          147                            469
  CLUS_3                           35                             24

Clustering(56) Variable = Del Peak 29(16q24.3) mutation analysis
D56V1, multiclass
D56V2, multiclass
        clus
vv       DEL PEAK 29(16Q24.3) MUTATED DEL PEAK 29(16Q24.3) WILD-TYPE
  CLUS_1                          110                             30
  CLUS_2                           45                             80
  CLUS_3                          181                             67
D56V3, multiclass
D56V4, multiclass
D56V5, multiclass
        clus
vv       DEL PEAK 29(16Q24.3) MUTATED DEL PEAK 29(16Q24.3) WILD-TYPE
  CLUS_1                           63                             84
  CLUS_2                          103                             30
  CLUS_3                           84                             33
D56V6, multiclass
        clus
vv       DEL PEAK 29(16Q24.3) MUTATED DEL PEAK 29(16Q24.3) WILD-TYPE
  CLUS_1                          119                             42
  CLUS_2                           83                             27
  CLUS_3                           48                             78
D56V7, multiclass
D56V8, multiclass
        clus
vv       DEL PEAK 29(16Q24.3) MUTATED DEL PEAK 29(16Q24.3) WILD-TYPE
  CLUS_1                          235                            101
  CLUS_2                           76                            129
  CLUS_3                          225                             62
D56V9, multiclass
        clus
vv       DEL PEAK 29(16Q24.3) MUTATED DEL PEAK 29(16Q24.3) WILD-TYPE
  CLUS_1                          135                             66
  CLUS_2                          320                            109
  CLUS_3                          112                            137
D56V10, multiclass
        clus
vv       DEL PEAK 29(16Q24.3) MUTATED DEL PEAK 29(16Q24.3) WILD-TYPE
  CLUS_1                           78                            126
  CLUS_2                          458                            158
  CLUS_3                           31                             28

Clustering(57) Variable = Del Peak 30(17p12) mutation analysis
D57V1, multiclass
D57V2, multiclass
        clus
vv       DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE
  CLUS_1                         82                           58
  CLUS_2                         85                           40
  CLUS_3                        145                          103
D57V3, multiclass
D57V4, multiclass
D57V5, multiclass
        clus
vv       DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE
  CLUS_1                        109                           38
  CLUS_2                         67                           66
  CLUS_3                         65                           52
D57V6, multiclass
        clus
vv       DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE
  CLUS_1                         93                           68
  CLUS_2                         58                           52
  CLUS_3                         90                           36
D57V7, multiclass
D57V8, multiclass
        clus
vv       DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE
  CLUS_1                        209                          127
  CLUS_2                        137                           68
  CLUS_3                        156                          131
D57V9, multiclass
        clus
vv       DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE
  CLUS_1                        110                           91
  CLUS_2                        238                          191
  CLUS_3                        184                           65
D57V10, multiclass
        clus
vv       DEL PEAK 30(17P12) MUTATED DEL PEAK 30(17P12) WILD-TYPE
  CLUS_1                        141                           63
  CLUS_2                        342                          274
  CLUS_3                         49                           10

Clustering(58) Variable = Del Peak 31(17q21.31) mutation analysis
D58V1, multiclass
D58V2, multiclass
        clus
vv       DEL PEAK 31(17Q21.31) MUTATED DEL PEAK 31(17Q21.31) WILD-TYPE
  CLUS_1                            45                              95
  CLUS_2                            72                              53
  CLUS_3                            73                             175
D58V3, multiclass
D58V4, multiclass
D58V5, multiclass
        clus
vv       DEL PEAK 31(17Q21.31) MUTATED DEL PEAK 31(17Q21.31) WILD-TYPE
  CLUS_1                            87                              60
  CLUS_2                            25                             108
  CLUS_3                            44                              73
D58V6, multiclass
        clus
vv       DEL PEAK 31(17Q21.31) MUTATED DEL PEAK 31(17Q21.31) WILD-TYPE
  CLUS_1                            42                             119
  CLUS_2                            33                              77
  CLUS_3                            81                              45
D58V7, multiclass
D58V8, multiclass
        clus
vv       DEL PEAK 31(17Q21.31) MUTATED DEL PEAK 31(17Q21.31) WILD-TYPE
  CLUS_1                            89                             247
  CLUS_2                           125                              80
  CLUS_3                            80                             207
D58V9, multiclass
        clus
vv       DEL PEAK 31(17Q21.31) MUTATED DEL PEAK 31(17Q21.31) WILD-TYPE
  CLUS_1                            59                             142
  CLUS_2                           109                             320
  CLUS_3                           138                             111
D58V10, multiclass
        clus
vv       DEL PEAK 31(17Q21.31) MUTATED DEL PEAK 31(17Q21.31) WILD-TYPE
  CLUS_1                           112                              92
  CLUS_2                           159                             457
  CLUS_3                            35                              24

Clustering(59) Variable = Del Peak 32(18q23) mutation analysis
D59V1, multiclass
D59V2, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         38                          102
  CLUS_2                         48                           77
  CLUS_3                         78                          170
D59V3, multiclass
D59V4, multiclass
D59V5, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         62                           85
  CLUS_2                         35                           98
  CLUS_3                         30                           87
D59V6, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         53                          108
  CLUS_2                         31                           79
  CLUS_3                         43                           83
D59V7, multiclass
D59V8, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                        109                          227
  CLUS_2                         86                          119
  CLUS_3                         74                          213
D59V9, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         48                          153
  CLUS_2                        131                          298
  CLUS_3                        108                          141
D59V10, multiclass
        clus
vv       DEL PEAK 32(18Q23) MUTATED DEL PEAK 32(18Q23) WILD-TYPE
  CLUS_1                         86                          118
  CLUS_2                        174                          442
  CLUS_3                         27                           32

Clustering(60) Variable = Del Peak 33(19p13.3) mutation analysis
D60V1, multiclass
D60V2, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           26                            114
  CLUS_2                           65                             60
  CLUS_3                           93                            155
D60V3, multiclass
D60V4, multiclass
D60V5, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           79                             68
  CLUS_2                           40                             93
  CLUS_3                           31                             86
D60V6, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           51                            110
  CLUS_2                           31                             79
  CLUS_3                           68                             58
D60V7, multiclass
D60V8, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                          131                            205
  CLUS_2                          102                            103
  CLUS_3                           54                            233
D60V9, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                           40                            161
  CLUS_2                          119                            310
  CLUS_3                          135                            114
D60V10, multiclass
        clus
vv       DEL PEAK 33(19P13.3) MUTATED DEL PEAK 33(19P13.3) WILD-TYPE
  CLUS_1                          113                             91
  CLUS_2                          156                            460
  CLUS_3                           25                             34

Clustering(61) Variable = Del Peak 34(19q13.32) mutation analysis
D61V1, multiclass
D61V2, multiclass
        clus
vv       DEL PEAK 34(19Q13.32) MUTATED DEL PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            12                             128
  CLUS_2                            36                              89
  CLUS_3                            49                             199
D61V3, multiclass
D61V4, multiclass
D61V5, multiclass
        clus
vv       DEL PEAK 34(19Q13.32) MUTATED DEL PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            44                             103
  CLUS_2                            20                             113
  CLUS_3                            15                             102
D61V6, multiclass
        clus
vv       DEL PEAK 34(19Q13.32) MUTATED DEL PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            27                             134
  CLUS_2                            11                              99
  CLUS_3                            41                              85
D61V7, multiclass
D61V8, multiclass
        clus
vv       DEL PEAK 34(19Q13.32) MUTATED DEL PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            83                             253
  CLUS_2                            66                             139
  CLUS_3                            25                             262
D61V9, multiclass
        clus
vv       DEL PEAK 34(19Q13.32) MUTATED DEL PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            21                             180
  CLUS_2                            68                             361
  CLUS_3                            85                             164
D61V10, multiclass
        clus
vv       DEL PEAK 34(19Q13.32) MUTATED DEL PEAK 34(19Q13.32) WILD-TYPE
  CLUS_1                            59                             145
  CLUS_2                            91                             525
  CLUS_3                            24                              35

Clustering(62) Variable = Del Peak 35(20p13) mutation analysis
D62V1, multiclass
D62V2, multiclass
        clus
vv       DEL PEAK 35(20P13) MUTATED DEL PEAK 35(20P13) WILD-TYPE
  CLUS_1                         10                          130
  CLUS_2                         32                           93
  CLUS_3                         37                          211
D62V3, multiclass
D62V4, multiclass
D62V5, multiclass
        clus
vv       DEL PEAK 35(20P13) MUTATED DEL PEAK 35(20P13) WILD-TYPE
  CLUS_1                         35                          112
  CLUS_2                         11                          122
  CLUS_3                         17                          100
D62V6, multiclass
        clus
vv       DEL PEAK 35(20P13) MUTATED DEL PEAK 35(20P13) WILD-TYPE
  CLUS_1                         22                          139
  CLUS_2                         11                           99
  CLUS_3                         30                           96
D62V7, multiclass
D62V8, multiclass
        clus
vv       DEL PEAK 35(20P13) MUTATED DEL PEAK 35(20P13) WILD-TYPE
  CLUS_1                         50                          286
  CLUS_2                         56                          149
  CLUS_3                         19                          268
D62V9, multiclass
        clus
vv       DEL PEAK 35(20P13) MUTATED DEL PEAK 35(20P13) WILD-TYPE
  CLUS_1                         15                          186
  CLUS_2                         41                          388
  CLUS_3                         70                          179
D62V10, multiclass
        clus
vv       DEL PEAK 35(20P13) MUTATED DEL PEAK 35(20P13) WILD-TYPE
  CLUS_1                         57                          147
  CLUS_2                         59                          557
  CLUS_3                         10                           49

Clustering(63) Variable = Del Peak 36(21q11.2) mutation analysis
D63V1, multiclass
D63V2, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                           21                            119
  CLUS_2                           22                            103
  CLUS_3                           63                            185
D63V3, multiclass
D63V4, multiclass
D63V5, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                           39                            108
  CLUS_2                           27                            106
  CLUS_3                           21                             96
D63V6, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                           40                            121
  CLUS_2                           21                             89
  CLUS_3                           26                            100
D63V7, multiclass
D63V8, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                           83                            253
  CLUS_2                           42                            163
  CLUS_3                           45                            242
D63V9, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                           29                            172
  CLUS_2                           85                            344
  CLUS_3                           63                            186
D63V10, multiclass
        clus
vv       DEL PEAK 36(21Q11.2) MUTATED DEL PEAK 36(21Q11.2) WILD-TYPE
  CLUS_1                           45                            159
  CLUS_2                          114                            502
  CLUS_3                           18                             41

Clustering(64) Variable = Del Peak 37(22q13.32) mutation analysis
D64V1, multiclass
D64V2, multiclass
        clus
vv       DEL PEAK 37(22Q13.32) MUTATED DEL PEAK 37(22Q13.32) WILD-TYPE
  CLUS_1                            64                              76
  CLUS_2                            46                              79
  CLUS_3                           125                             123
D64V3, multiclass
D64V4, multiclass
D64V5, multiclass
        clus
vv       DEL PEAK 37(22Q13.32) MUTATED DEL PEAK 37(22Q13.32) WILD-TYPE
  CLUS_1                            65                              82
  CLUS_2                            74                              59
  CLUS_3                            53                              64
D64V6, multiclass
        clus
vv       DEL PEAK 37(22Q13.32) MUTATED DEL PEAK 37(22Q13.32) WILD-TYPE
  CLUS_1                            89                              72
  CLUS_2                            54                              56
  CLUS_3                            49                              77
D64V7, multiclass
D64V8, multiclass
        clus
vv       DEL PEAK 37(22Q13.32) MUTATED DEL PEAK 37(22Q13.32) WILD-TYPE
  CLUS_1                           173                             163
  CLUS_2                            72                             133
  CLUS_3                           127                             160
D64V9, multiclass
        clus
vv       DEL PEAK 37(22Q13.32) MUTATED DEL PEAK 37(22Q13.32) WILD-TYPE
  CLUS_1                            73                             128
  CLUS_2                           216                             213
  CLUS_3                           104                             145
D64V10, multiclass
        clus
vv       DEL PEAK 37(22Q13.32) MUTATED DEL PEAK 37(22Q13.32) WILD-TYPE
  CLUS_1                            80                             124
  CLUS_2                           288                             328
  CLUS_3                            25                              34
                     V1                      V2                      V3 
            "MRNA_CNMF"    "MRNA_CHIERARCHICAL"               "CN_CNMF" 
                     V4                      V5                      V6 
     "METHLYATION_CNMF"             "RPPA_CNMF"    "RPPA_CHIERARCHICAL" 
                     V7                      V8                      V9 
         "MRNASEQ_CNMF" "MRNASEQ_CHIERARCHICAL"           "MIRSEQ_CNMF" 
                    V10 
 "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
