
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/375837/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/HNSC-TP/2907413/1.GDAC_mergedClustering.Finished/HNSC-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=HNSC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=HNSC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=358, in cluster file=352, common to both=352
[1]  70 352
[1] "Amp Peak  1(1q21.2) mutation analysis"
[1] 3
  AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE 
                           82                           270 
  AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE 
                           82                           270 
[1] "Amp Peak  2(2q11.2) mutation analysis"
[1] 3
  AMP PEAK  2(2Q11.2) MUTATED AMP PEAK  2(2Q11.2) WILD-TYPE 
                           74                           278 
  AMP PEAK  2(2Q11.2) MUTATED AMP PEAK  2(2Q11.2) WILD-TYPE 
                           74                           278 
[1] "Amp Peak  3(2q31.2) mutation analysis"
[1] 3
  AMP PEAK  3(2Q31.2) MUTATED AMP PEAK  3(2Q31.2) WILD-TYPE 
                           72                           280 
  AMP PEAK  3(2Q31.2) MUTATED AMP PEAK  3(2Q31.2) WILD-TYPE 
                           72                           280 
[1] "Amp Peak  4(3q26.33) mutation analysis"
[1] 3
  AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE 
                           264                             88 
  AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE 
                           264                             88 
[1] "Amp Peak  5(5p15.33) mutation analysis"
[1] 3
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                           157                            195 
  AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE 
                           157                            195 
[1] "Amp Peak  6(5p12) mutation analysis"
[1] 3
  AMP PEAK  6(5P12) MUTATED AMP PEAK  6(5P12) WILD-TYPE 
                        131                         221 
  AMP PEAK  6(5P12) MUTATED AMP PEAK  6(5P12) WILD-TYPE 
                        131                         221 
[1] "Amp Peak  7(6p12.1) mutation analysis"
[1] 3
  AMP PEAK  7(6P12.1) MUTATED AMP PEAK  7(6P12.1) WILD-TYPE 
                           70                           282 
  AMP PEAK  7(6P12.1) MUTATED AMP PEAK  7(6P12.1) WILD-TYPE 
                           70                           282 
[1] "Amp Peak  8(6q12) mutation analysis"
[1] 3
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         62                         290 
  AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE 
                         62                         290 
[1] "Amp Peak  9(7p11.2) mutation analysis"
[1] 3
  AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE 
                          147                           205 
  AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE 
                          147                           205 
[1] "Amp Peak 10(7q22.1) mutation analysis"
[1] 3
  AMP PEAK 10(7Q22.1) MUTATED AMP PEAK 10(7Q22.1) WILD-TYPE 
                          121                           231 
  AMP PEAK 10(7Q22.1) MUTATED AMP PEAK 10(7Q22.1) WILD-TYPE 
                          121                           231 
[1] "Amp Peak 11(8p11.23) mutation analysis"
[1] 3
  AMP PEAK 11(8P11.23) MUTATED AMP PEAK 11(8P11.23) WILD-TYPE 
                           111                            241 
  AMP PEAK 11(8P11.23) MUTATED AMP PEAK 11(8P11.23) WILD-TYPE 
                           111                            241 
[1] "Amp Peak 12(8q11.21) mutation analysis"
[1] 3
  AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE 
                           207                            145 
  AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE 
                           207                            145 
[1] "Amp Peak 13(8q24.21) mutation analysis"
[1] 3
  AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE 
                           254                             98 
  AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE 
                           254                             98 
[1] "Amp Peak 14(9p23) mutation analysis"
[1] 3
  AMP PEAK 14(9P23) MUTATED AMP PEAK 14(9P23) WILD-TYPE 
                         83                         269 
  AMP PEAK 14(9P23) MUTATED AMP PEAK 14(9P23) WILD-TYPE 
                         83                         269 
[1] "Amp Peak 15(9p13.3) mutation analysis"
[1] 3
  AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE 
                           95                           257 
  AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE 
                           95                           257 
[1] "Amp Peak 16(11p13) mutation analysis"
[1] 3
  AMP PEAK 16(11P13) MUTATED AMP PEAK 16(11P13) WILD-TYPE 
                          69                          283 
  AMP PEAK 16(11P13) MUTATED AMP PEAK 16(11P13) WILD-TYPE 
                          69                          283 
[1] "Amp Peak 17(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE 
                           164                            188 
  AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE 
                           164                            188 
[1] "Amp Peak 18(12p13.33) mutation analysis"
[1] 3
  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                            118                             234 
  AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE 
                            118                             234 
[1] "Amp Peak 19(12q15) mutation analysis"
[1] 3
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                          72                          280 
  AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE 
                          72                          280 
[1] "Amp Peak 20(13q22.1) mutation analysis"
[1] 3
  AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE 
                            72                            280 
  AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE 
                            72                            280 
[1] "Amp Peak 21(15q26.3) mutation analysis"
[1] 3
  AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE 
                            75                            277 
  AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE 
                            75                            277 
[1] "Amp Peak 22(17q12) mutation analysis"
[1] 3
  AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE 
                          63                          289 
  AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE 
                          63                          289 
[1] "Amp Peak 23(18p11.31) mutation analysis"
[1] 3
  AMP PEAK 23(18P11.31) MUTATED AMP PEAK 23(18P11.31) WILD-TYPE 
                            108                             244 
  AMP PEAK 23(18P11.31) MUTATED AMP PEAK 23(18P11.31) WILD-TYPE 
                            108                             244 
[1] "Amp Peak 24(18q11.2) mutation analysis"
[1] 3
  AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE 
                            74                            278 
  AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE 
                            74                            278 
[1] "Amp Peak 25(20q11.22) mutation analysis"
[1] 3
  AMP PEAK 25(20Q11.22) MUTATED AMP PEAK 25(20Q11.22) WILD-TYPE 
                            155                             197 
  AMP PEAK 25(20Q11.22) MUTATED AMP PEAK 25(20Q11.22) WILD-TYPE 
                            155                             197 
[1] "Del Peak  1(1p36.13) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                            69                            283 
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                            69                            283 
[1] "Del Peak  2(1p13.2) mutation analysis"
[1] 3
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           85                           267 
  DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE 
                           85                           267 
[1] "Del Peak  3(1q44) mutation analysis"
[1] 3
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         30                         322 
  DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE 
                         30                         322 
[1] "Del Peak  4(2q21.2) mutation analysis"
[1] 3
  DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE 
                           46                           306 
  DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE 
                           46                           306 
[1] "Del Peak  5(2q22.1) mutation analysis"
[1] 3
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                           78                           274 
  DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE 
                           78                           274 
[1] "Del Peak  6(2q36.2) mutation analysis"
[1] 3
  DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE 
                          104                           248 
  DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE 
                          104                           248 
[1] "Del Peak  7(3p25.3) mutation analysis"
[1] 3
  DEL PEAK  7(3P25.3) MUTATED DEL PEAK  7(3P25.3) WILD-TYPE 
                          247                           105 
  DEL PEAK  7(3P25.3) MUTATED DEL PEAK  7(3P25.3) WILD-TYPE 
                          247                           105 
[1] "Del Peak  8(3p14.2) mutation analysis"
[1] 3
  DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE 
                          263                            89 
  DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE 
                          263                            89 
[1] "Del Peak  9(3p14.2) mutation analysis"
[1] 3
  DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE 
                          263                            89 
  DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE 
                          263                            89 
[1] "Del Peak 10(3p12.2) mutation analysis"
[1] 3
  DEL PEAK 10(3P12.2) MUTATED DEL PEAK 10(3P12.2) WILD-TYPE 
                          249                           103 
  DEL PEAK 10(3P12.2) MUTATED DEL PEAK 10(3P12.2) WILD-TYPE 
                          249                           103 
[1] "Del Peak 11(4p15.2) mutation analysis"
[1] 3
  DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE 
                          150                           202 
  DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE 
                          150                           202 
[1] "Del Peak 12(4q22.1) mutation analysis"
[1] 3
  DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE 
                          117                           235 
  DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE 
                          117                           235 
[1] "Del Peak 13(4q35.2) mutation analysis"
[1] 3
  DEL PEAK 13(4Q35.2) MUTATED DEL PEAK 13(4Q35.2) WILD-TYPE 
                          145                           207 
  DEL PEAK 13(4Q35.2) MUTATED DEL PEAK 13(4Q35.2) WILD-TYPE 
                          145                           207 
[1] "Del Peak 14(5q11.2) mutation analysis"
[1] 3
  DEL PEAK 14(5Q11.2) MUTATED DEL PEAK 14(5Q11.2) WILD-TYPE 
                          142                           210 
  DEL PEAK 14(5Q11.2) MUTATED DEL PEAK 14(5Q11.2) WILD-TYPE 
                          142                           210 
[1] "Del Peak 15(5q35.3) mutation analysis"
[1] 3
  DEL PEAK 15(5Q35.3) MUTATED DEL PEAK 15(5Q35.3) WILD-TYPE 
                          134                           218 
  DEL PEAK 15(5Q35.3) MUTATED DEL PEAK 15(5Q35.3) WILD-TYPE 
                          134                           218 
[1] "Del Peak 16(6p25.3) mutation analysis"
[1] 3
  DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE 
                           68                           284 
  DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE 
                           68                           284 
[1] "Del Peak 17(7q31.1) mutation analysis"
[1] 3
  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                           54                           298 
  DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE 
                           54                           298 
[1] "Del Peak 18(7q36.1) mutation analysis"
[1] 3
  DEL PEAK 18(7Q36.1) MUTATED DEL PEAK 18(7Q36.1) WILD-TYPE 
                           86                           266 
  DEL PEAK 18(7Q36.1) MUTATED DEL PEAK 18(7Q36.1) WILD-TYPE 
                           86                           266 
[1] "Del Peak 19(8p23.2) mutation analysis"
[1] 3
  DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE 
                          201                           151 
  DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE 
                          201                           151 
[1] "Del Peak 20(9p23) mutation analysis"
[1] 3
  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                        161                         191 
  DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE 
                        161                         191 
[1] "Del Peak 21(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE 
                          204                           148 
  DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE 
                          204                           148 
[1] "Del Peak 22(9q21.11) mutation analysis"
[1] 3
  DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE 
                            65                            287 
  DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE 
                            65                            287 
[1] "Del Peak 23(9q34.3) mutation analysis"
[1] 3
  DEL PEAK 23(9Q34.3) MUTATED DEL PEAK 23(9Q34.3) WILD-TYPE 
                           56                           296 
  DEL PEAK 23(9Q34.3) MUTATED DEL PEAK 23(9Q34.3) WILD-TYPE 
                           56                           296 
[1] "Del Peak 24(10p15.3) mutation analysis"
[1] 3
  DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE 
                           114                            238 
  DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE 
                           114                            238 
[1] "Del Peak 25(10p11.21) mutation analysis"
[1] 3
  DEL PEAK 25(10P11.21) MUTATED DEL PEAK 25(10P11.21) WILD-TYPE 
                            107                             245 
  DEL PEAK 25(10P11.21) MUTATED DEL PEAK 25(10P11.21) WILD-TYPE 
                            107                             245 
[1] "Del Peak 26(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 26(10Q23.31) MUTATED DEL PEAK 26(10Q23.31) WILD-TYPE 
                             89                             263 
  DEL PEAK 26(10Q23.31) MUTATED DEL PEAK 26(10Q23.31) WILD-TYPE 
                             89                             263 
[1] "Del Peak 27(11p15.4) mutation analysis"
[1] 3
  DEL PEAK 27(11P15.4) MUTATED DEL PEAK 27(11P15.4) WILD-TYPE 
                           110                            242 
  DEL PEAK 27(11P15.4) MUTATED DEL PEAK 27(11P15.4) WILD-TYPE 
                           110                            242 
[1] "Del Peak 28(11q14.1) mutation analysis"
[1] 3
  DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE 
                           112                            240 
  DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE 
                           112                            240 
[1] "Del Peak 29(11q23.1) mutation analysis"
[1] 3
  DEL PEAK 29(11Q23.1) MUTATED DEL PEAK 29(11Q23.1) WILD-TYPE 
                           169                            183 
  DEL PEAK 29(11Q23.1) MUTATED DEL PEAK 29(11Q23.1) WILD-TYPE 
                           169                            183 
[1] "Del Peak 30(12q24.33) mutation analysis"
[1] 3
  DEL PEAK 30(12Q24.33) MUTATED DEL PEAK 30(12Q24.33) WILD-TYPE 
                             40                             312 
  DEL PEAK 30(12Q24.33) MUTATED DEL PEAK 30(12Q24.33) WILD-TYPE 
                             40                             312 
[1] "Del Peak 31(13q12.11) mutation analysis"
[1] 3
  DEL PEAK 31(13Q12.11) MUTATED DEL PEAK 31(13Q12.11) WILD-TYPE 
                            159                             193 
  DEL PEAK 31(13Q12.11) MUTATED DEL PEAK 31(13Q12.11) WILD-TYPE 
                            159                             193 
[1] "Del Peak 32(13q14.2) mutation analysis"
[1] 3
  DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE 
                           149                            203 
  DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE 
                           149                            203 
[1] "Del Peak 33(14q11.2) mutation analysis"
[1] 3
  DEL PEAK 33(14Q11.2) MUTATED DEL PEAK 33(14Q11.2) WILD-TYPE 
                            51                            301 
  DEL PEAK 33(14Q11.2) MUTATED DEL PEAK 33(14Q11.2) WILD-TYPE 
                            51                            301 
[1] "Del Peak 34(14q32.32) mutation analysis"
[1] 3
  DEL PEAK 34(14Q32.32) MUTATED DEL PEAK 34(14Q32.32) WILD-TYPE 
                             53                             299 
  DEL PEAK 34(14Q32.32) MUTATED DEL PEAK 34(14Q32.32) WILD-TYPE 
                             53                             299 
[1] "Del Peak 35(15q15.1) mutation analysis"
[1] 3
  DEL PEAK 35(15Q15.1) MUTATED DEL PEAK 35(15Q15.1) WILD-TYPE 
                            79                            273 
  DEL PEAK 35(15Q15.1) MUTATED DEL PEAK 35(15Q15.1) WILD-TYPE 
                            79                            273 
[1] "Del Peak 36(16q12.1) mutation analysis"
[1] 3
  DEL PEAK 36(16Q12.1) MUTATED DEL PEAK 36(16Q12.1) WILD-TYPE 
                            62                            290 
  DEL PEAK 36(16Q12.1) MUTATED DEL PEAK 36(16Q12.1) WILD-TYPE 
                            62                            290 
[1] "Del Peak 37(16q23.3) mutation analysis"
[1] 3
  DEL PEAK 37(16Q23.3) MUTATED DEL PEAK 37(16Q23.3) WILD-TYPE 
                            72                            280 
  DEL PEAK 37(16Q23.3) MUTATED DEL PEAK 37(16Q23.3) WILD-TYPE 
                            72                            280 
[1] "Del Peak 38(17q25.3) mutation analysis"
[1] 3
  DEL PEAK 38(17Q25.3) MUTATED DEL PEAK 38(17Q25.3) WILD-TYPE 
                            42                            310 
  DEL PEAK 38(17Q25.3) MUTATED DEL PEAK 38(17Q25.3) WILD-TYPE 
                            42                            310 
[1] "Del Peak 39(18q21.2) mutation analysis"
[1] 3
  DEL PEAK 39(18Q21.2) MUTATED DEL PEAK 39(18Q21.2) WILD-TYPE 
                           182                            170 
  DEL PEAK 39(18Q21.2) MUTATED DEL PEAK 39(18Q21.2) WILD-TYPE 
                           182                            170 
[1] "Del Peak 40(18q23) mutation analysis"
[1] 3
  DEL PEAK 40(18Q23) MUTATED DEL PEAK 40(18Q23) WILD-TYPE 
                         198                          154 
  DEL PEAK 40(18Q23) MUTATED DEL PEAK 40(18Q23) WILD-TYPE 
                         198                          154 
[1] "Del Peak 41(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE 
                           117                            235 
  DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE 
                           117                            235 
[1] "Del Peak 42(19q13.43) mutation analysis"
[1] 3
  DEL PEAK 42(19Q13.43) MUTATED DEL PEAK 42(19Q13.43) WILD-TYPE 
                             68                             284 
  DEL PEAK 42(19Q13.43) MUTATED DEL PEAK 42(19Q13.43) WILD-TYPE 
                             68                             284 
[1] "Del Peak 43(Xp21.3) mutation analysis"
[1] 3
  DEL PEAK 43(XP21.3) MUTATED DEL PEAK 43(XP21.3) WILD-TYPE 
                          116                           236 
  DEL PEAK 43(XP21.3) MUTATED DEL PEAK 43(XP21.3) WILD-TYPE 
                          116                           236 
[1] "Del Peak 44(Xp11.3) mutation analysis"
[1] 3
  DEL PEAK 44(XP11.3) MUTATED DEL PEAK 44(XP11.3) WILD-TYPE 
                          114                           238 
  DEL PEAK 44(XP11.3) MUTATED DEL PEAK 44(XP11.3) WILD-TYPE 
                          114                           238 
[1] "Del Peak 45(Xq21.33) mutation analysis"
[1] 3
  DEL PEAK 45(XQ21.33) MUTATED DEL PEAK 45(XQ21.33) WILD-TYPE 
                            56                            296 
  DEL PEAK 45(XQ21.33) MUTATED DEL PEAK 45(XQ21.33) WILD-TYPE 
                            56                            296 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "RPPA_CNMF"            
[4] "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL"
[7] "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 

Input Data has 8 rows and 352 columns.

Variable 1:'CN_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "RPPA_CNMF"            
[4] "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL"
[7] "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 352 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=6, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=8, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1q21.2) mutation analysis
D1V1, multiclass
D1V2, multiclass
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          15                            57
  CLUS_2                          17                            34
  CLUS_3                           7                            22
  CLUS_4                          13                            41
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          31                            81
  CLUS_2                          17                            59
  CLUS_3                           4                            14
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          41                            77
  CLUS_2                          16                            75
  CLUS_3                          12                            78
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          16                            79
  CLUS_2                          13                            71
  CLUS_3                          40                            80
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                          15                            98
  CLUS_2                          48                            89
  CLUS_3                          19                            82
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q21.2) MUTATED AMP PEAK  1(1Q21.2) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                          27                           106
  CLUS_3                          53                           156

Clustering(2) Variable = Amp Peak  2(2q11.2) mutation analysis
D2V1, multiclass
D2V2, multiclass
D2V3, multiclass
        clus
vv       AMP PEAK  2(2Q11.2) MUTATED AMP PEAK  2(2Q11.2) WILD-TYPE
  CLUS_1                          17                            55
  CLUS_2                          12                            39
  CLUS_3                           7                            22
  CLUS_4                          14                            40
D2V4, multiclass
        clus
vv       AMP PEAK  2(2Q11.2) MUTATED AMP PEAK  2(2Q11.2) WILD-TYPE
  CLUS_1                          25                            87
  CLUS_2                          18                            58
  CLUS_3                           7                            11
D2V5, multiclass
        clus
vv       AMP PEAK  2(2Q11.2) MUTATED AMP PEAK  2(2Q11.2) WILD-TYPE
  CLUS_1                          36                            82
  CLUS_2                          19                            72
  CLUS_3                          12                            78
D2V6, multiclass
        clus
vv       AMP PEAK  2(2Q11.2) MUTATED AMP PEAK  2(2Q11.2) WILD-TYPE
  CLUS_1                          17                            78
  CLUS_2                          15                            69
  CLUS_3                          35                            85
D2V7, multiclass
        clus
vv       AMP PEAK  2(2Q11.2) MUTATED AMP PEAK  2(2Q11.2) WILD-TYPE
  CLUS_1                          15                            98
  CLUS_2                          41                            96
  CLUS_3                          17                            84
D2V8, multiclass
        clus
vv       AMP PEAK  2(2Q11.2) MUTATED AMP PEAK  2(2Q11.2) WILD-TYPE
  CLUS_1                           0                             9
  CLUS_2                          23                           110
  CLUS_3                          50                           159

Clustering(3) Variable = Amp Peak  3(2q31.2) mutation analysis
D3V1, multiclass
D3V2, multiclass
D3V3, multiclass
        clus
vv       AMP PEAK  3(2Q31.2) MUTATED AMP PEAK  3(2Q31.2) WILD-TYPE
  CLUS_1                          16                            56
  CLUS_2                          15                            36
  CLUS_3                           8                            21
  CLUS_4                          13                            41
D3V4, multiclass
        clus
vv       AMP PEAK  3(2Q31.2) MUTATED AMP PEAK  3(2Q31.2) WILD-TYPE
  CLUS_1                          32                            80
  CLUS_2                          16                            60
  CLUS_3                           4                            14
D3V5, multiclass
        clus
vv       AMP PEAK  3(2Q31.2) MUTATED AMP PEAK  3(2Q31.2) WILD-TYPE
  CLUS_1                          30                            88
  CLUS_2                          20                            71
  CLUS_3                          15                            75
D3V6, multiclass
        clus
vv       AMP PEAK  3(2Q31.2) MUTATED AMP PEAK  3(2Q31.2) WILD-TYPE
  CLUS_1                          19                            76
  CLUS_2                          13                            71
  CLUS_3                          33                            87
D3V7, multiclass
        clus
vv       AMP PEAK  3(2Q31.2) MUTATED AMP PEAK  3(2Q31.2) WILD-TYPE
  CLUS_1                          17                            96
  CLUS_2                          32                           105
  CLUS_3                          22                            79
D3V8, multiclass
        clus
vv       AMP PEAK  3(2Q31.2) MUTATED AMP PEAK  3(2Q31.2) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                          25                           108
  CLUS_3                          43                           166

Clustering(4) Variable = Amp Peak  4(3q26.33) mutation analysis
D4V1, multiclass
D4V2, multiclass
D4V3, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                           50                             22
  CLUS_2                           42                              9
  CLUS_3                           19                             10
  CLUS_4                           42                             12
D4V4, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                           85                             27
  CLUS_2                           52                             24
  CLUS_3                           16                              2
D4V5, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                           97                             21
  CLUS_2                           73                             18
  CLUS_3                           55                             35
D4V6, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                           75                             20
  CLUS_2                           50                             34
  CLUS_3                          100                             20
D4V7, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                           73                             40
  CLUS_2                          116                             21
  CLUS_3                           74                             27
D4V8, multiclass
        clus
vv       AMP PEAK  4(3Q26.33) MUTATED AMP PEAK  4(3Q26.33) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                          104                             29
  CLUS_3                          155                             54

Clustering(5) Variable = Amp Peak  5(5p15.33) mutation analysis
D5V1, multiclass
D5V2, multiclass
D5V3, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           30                             42
  CLUS_2                           23                             28
  CLUS_3                            9                             20
  CLUS_4                           24                             30
D5V4, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           42                             70
  CLUS_2                           34                             42
  CLUS_3                           10                              8
D5V5, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           57                             61
  CLUS_2                           42                             49
  CLUS_3                           38                             52
D5V6, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           42                             53
  CLUS_2                           34                             50
  CLUS_3                           61                             59
D5V7, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                           54                             59
  CLUS_2                           58                             79
  CLUS_3                           44                             57
D5V8, multiclass
        clus
vv       AMP PEAK  5(5P15.33) MUTATED AMP PEAK  5(5P15.33) WILD-TYPE
  CLUS_1                            5                              4
  CLUS_2                           56                             77
  CLUS_3                           95                            114

Clustering(6) Variable = Amp Peak  6(5p12) mutation analysis
D6V1, multiclass
D6V2, multiclass
D6V3, multiclass
        clus
vv       AMP PEAK  6(5P12) MUTATED AMP PEAK  6(5P12) WILD-TYPE
  CLUS_1                        24                          48
  CLUS_2                        23                          28
  CLUS_3                         9                          20
  CLUS_4                        22                          32
D6V4, multiclass
        clus
vv       AMP PEAK  6(5P12) MUTATED AMP PEAK  6(5P12) WILD-TYPE
  CLUS_1                        42                          70
  CLUS_2                        29                          47
  CLUS_3                         7                          11
D6V5, multiclass
        clus
vv       AMP PEAK  6(5P12) MUTATED AMP PEAK  6(5P12) WILD-TYPE
  CLUS_1                        47                          71
  CLUS_2                        35                          56
  CLUS_3                        33                          57
D6V6, multiclass
        clus
vv       AMP PEAK  6(5P12) MUTATED AMP PEAK  6(5P12) WILD-TYPE
  CLUS_1                        33                          62
  CLUS_2                        30                          54
  CLUS_3                        52                          68
D6V7, multiclass
        clus
vv       AMP PEAK  6(5P12) MUTATED AMP PEAK  6(5P12) WILD-TYPE
  CLUS_1                        43                          70
  CLUS_2                        48                          89
  CLUS_3                        39                          62
D6V8, multiclass
        clus
vv       AMP PEAK  6(5P12) MUTATED AMP PEAK  6(5P12) WILD-TYPE
  CLUS_1                         4                           5
  CLUS_2                        49                          84
  CLUS_3                        77                         132

Clustering(7) Variable = Amp Peak  7(6p12.1) mutation analysis
D7V1, multiclass
D7V2, multiclass
D7V3, multiclass
        clus
vv       AMP PEAK  7(6P12.1) MUTATED AMP PEAK  7(6P12.1) WILD-TYPE
  CLUS_1                          17                            55
  CLUS_2                          14                            37
  CLUS_3                           3                            26
  CLUS_4                          10                            44
D7V4, multiclass
        clus
vv       AMP PEAK  7(6P12.1) MUTATED AMP PEAK  7(6P12.1) WILD-TYPE
  CLUS_1                          23                            89
  CLUS_2                          19                            57
  CLUS_3                           2                            16
D7V5, multiclass
        clus
vv       AMP PEAK  7(6P12.1) MUTATED AMP PEAK  7(6P12.1) WILD-TYPE
  CLUS_1                          25                            93
  CLUS_2                          19                            72
  CLUS_3                          18                            72
D7V6, multiclass
        clus
vv       AMP PEAK  7(6P12.1) MUTATED AMP PEAK  7(6P12.1) WILD-TYPE
  CLUS_1                          18                            77
  CLUS_2                          17                            67
  CLUS_3                          27                            93
D7V7, multiclass
        clus
vv       AMP PEAK  7(6P12.1) MUTATED AMP PEAK  7(6P12.1) WILD-TYPE
  CLUS_1                          22                            91
  CLUS_2                          26                           111
  CLUS_3                          21                            80
D7V8, multiclass
        clus
vv       AMP PEAK  7(6P12.1) MUTATED AMP PEAK  7(6P12.1) WILD-TYPE
  CLUS_1                           5                             4
  CLUS_2                          29                           104
  CLUS_3                          35                           174

Clustering(8) Variable = Amp Peak  8(6q12) mutation analysis
D8V1, multiclass
D8V2, multiclass
D8V3, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        16                          56
  CLUS_2                        11                          40
  CLUS_3                         4                          25
  CLUS_4                        10                          44
D8V4, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        20                          92
  CLUS_2                        19                          57
  CLUS_3                         2                          16
D8V5, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        23                          95
  CLUS_2                        18                          73
  CLUS_3                        17                          73
D8V6, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        17                          78
  CLUS_2                        18                          66
  CLUS_3                        23                          97
D8V7, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                        21                          92
  CLUS_2                        21                         116
  CLUS_3                        19                          82
D8V8, multiclass
        clus
vv       AMP PEAK  8(6Q12) MUTATED AMP PEAK  8(6Q12) WILD-TYPE
  CLUS_1                         4                           5
  CLUS_2                        25                         108
  CLUS_3                        32                         177

Clustering(9) Variable = Amp Peak  9(7p11.2) mutation analysis
D9V1, multiclass
D9V2, multiclass
D9V3, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                          29                            43
  CLUS_2                          24                            27
  CLUS_3                          18                            11
  CLUS_4                          24                            30
D9V4, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                          52                            60
  CLUS_2                          36                            40
  CLUS_3                           7                            11
D9V5, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                          46                            72
  CLUS_2                          41                            50
  CLUS_3                          42                            48
D9V6, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                          42                            53
  CLUS_2                          37                            47
  CLUS_3                          50                            70
D9V7, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                          47                            66
  CLUS_2                          55                            82
  CLUS_3                          44                            57
D9V8, multiclass
        clus
vv       AMP PEAK  9(7P11.2) MUTATED AMP PEAK  9(7P11.2) WILD-TYPE
  CLUS_1                           7                             2
  CLUS_2                          53                            80
  CLUS_3                          86                           123

Clustering(10) Variable = Amp Peak 10(7q22.1) mutation analysis
D10V1, multiclass
D10V2, multiclass
D10V3, multiclass
        clus
vv       AMP PEAK 10(7Q22.1) MUTATED AMP PEAK 10(7Q22.1) WILD-TYPE
  CLUS_1                          26                            46
  CLUS_2                          21                            30
  CLUS_3                          13                            16
  CLUS_4                          17                            37
D10V4, multiclass
        clus
vv       AMP PEAK 10(7Q22.1) MUTATED AMP PEAK 10(7Q22.1) WILD-TYPE
  CLUS_1                          39                            73
  CLUS_2                          32                            44
  CLUS_3                           6                            12
D10V5, multiclass
        clus
vv       AMP PEAK 10(7Q22.1) MUTATED AMP PEAK 10(7Q22.1) WILD-TYPE
  CLUS_1                          46                            72
  CLUS_2                          31                            60
  CLUS_3                          25                            65
D10V6, multiclass
        clus
vv       AMP PEAK 10(7Q22.1) MUTATED AMP PEAK 10(7Q22.1) WILD-TYPE
  CLUS_1                          29                            66
  CLUS_2                          26                            58
  CLUS_3                          47                            73
D10V7, multiclass
        clus
vv       AMP PEAK 10(7Q22.1) MUTATED AMP PEAK 10(7Q22.1) WILD-TYPE
  CLUS_1                          34                            79
  CLUS_2                          59                            78
  CLUS_3                          27                            74
D10V8, multiclass
        clus
vv       AMP PEAK 10(7Q22.1) MUTATED AMP PEAK 10(7Q22.1) WILD-TYPE
  CLUS_1                           4                             5
  CLUS_2                          42                            91
  CLUS_3                          74                           135

Clustering(11) Variable = Amp Peak 11(8p11.23) mutation analysis
D11V1, multiclass
D11V2, multiclass
D11V3, multiclass
        clus
vv       AMP PEAK 11(8P11.23) MUTATED AMP PEAK 11(8P11.23) WILD-TYPE
  CLUS_1                           20                             52
  CLUS_2                           16                             35
  CLUS_3                            8                             21
  CLUS_4                           18                             36
D11V4, multiclass
        clus
vv       AMP PEAK 11(8P11.23) MUTATED AMP PEAK 11(8P11.23) WILD-TYPE
  CLUS_1                           34                             78
  CLUS_2                           21                             55
  CLUS_3                            7                             11
D11V5, multiclass
        clus
vv       AMP PEAK 11(8P11.23) MUTATED AMP PEAK 11(8P11.23) WILD-TYPE
  CLUS_1                           46                             72
  CLUS_2                           24                             67
  CLUS_3                           28                             62
D11V6, multiclass
        clus
vv       AMP PEAK 11(8P11.23) MUTATED AMP PEAK 11(8P11.23) WILD-TYPE
  CLUS_1                           21                             74
  CLUS_2                           29                             55
  CLUS_3                           48                             72
D11V7, multiclass
        clus
vv       AMP PEAK 11(8P11.23) MUTATED AMP PEAK 11(8P11.23) WILD-TYPE
  CLUS_1                           29                             84
  CLUS_2                           55                             82
  CLUS_3                           26                             75
D11V8, multiclass
        clus
vv       AMP PEAK 11(8P11.23) MUTATED AMP PEAK 11(8P11.23) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                           34                             99
  CLUS_3                           72                            137

Clustering(12) Variable = Amp Peak 12(8q11.21) mutation analysis
D12V1, multiclass
D12V2, multiclass
D12V3, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           39                             33
  CLUS_2                           22                             29
  CLUS_3                           20                              9
  CLUS_4                           37                             17
D12V4, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           65                             47
  CLUS_2                           45                             31
  CLUS_3                            8                             10
D12V5, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           53                             65
  CLUS_2                           63                             28
  CLUS_3                           56                             34
D12V6, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           67                             28
  CLUS_2                           51                             33
  CLUS_3                           54                             66
D12V7, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                           72                             41
  CLUS_2                           65                             72
  CLUS_3                           69                             32
D12V8, multiclass
        clus
vv       AMP PEAK 12(8Q11.21) MUTATED AMP PEAK 12(8Q11.21) WILD-TYPE
  CLUS_1                            6                              3
  CLUS_2                           92                             41
  CLUS_3                          108                            101

Clustering(13) Variable = Amp Peak 13(8q24.21) mutation analysis
D13V1, multiclass
D13V2, multiclass
D13V3, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           47                             25
  CLUS_2                           36                             15
  CLUS_3                           24                              5
  CLUS_4                           43                             11
D13V4, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           83                             29
  CLUS_2                           54                             22
  CLUS_3                           13                              5
D13V5, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           69                             49
  CLUS_2                           77                             14
  CLUS_3                           68                             22
D13V6, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           79                             16
  CLUS_2                           65                             19
  CLUS_3                           70                             50
D13V7, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                           85                             28
  CLUS_2                           87                             50
  CLUS_3                           81                             20
D13V8, multiclass
        clus
vv       AMP PEAK 13(8Q24.21) MUTATED AMP PEAK 13(8Q24.21) WILD-TYPE
  CLUS_1                            7                              2
  CLUS_2                          110                             23
  CLUS_3                          136                             73

Clustering(14) Variable = Amp Peak 14(9p23) mutation analysis
D14V1, multiclass
D14V2, multiclass
D14V3, multiclass
        clus
vv       AMP PEAK 14(9P23) MUTATED AMP PEAK 14(9P23) WILD-TYPE
  CLUS_1                        19                          53
  CLUS_2                        11                          40
  CLUS_3                        10                          19
  CLUS_4                        14                          40
D14V4, multiclass
        clus
vv       AMP PEAK 14(9P23) MUTATED AMP PEAK 14(9P23) WILD-TYPE
  CLUS_1                        28                          84
  CLUS_2                        21                          55
  CLUS_3                         5                          13
D14V5, multiclass
        clus
vv       AMP PEAK 14(9P23) MUTATED AMP PEAK 14(9P23) WILD-TYPE
  CLUS_1                        20                          98
  CLUS_2                        25                          66
  CLUS_3                        25                          65
D14V6, multiclass
        clus
vv       AMP PEAK 14(9P23) MUTATED AMP PEAK 14(9P23) WILD-TYPE
  CLUS_1                        25                          70
  CLUS_2                        23                          61
  CLUS_3                        22                          98
D14V7, multiclass
        clus
vv       AMP PEAK 14(9P23) MUTATED AMP PEAK 14(9P23) WILD-TYPE
  CLUS_1                        31                          82
  CLUS_2                        27                         110
  CLUS_3                        24                          77
D14V8, multiclass
        clus
vv       AMP PEAK 14(9P23) MUTATED AMP PEAK 14(9P23) WILD-TYPE
  CLUS_1                         2                           7
  CLUS_2                        30                         103
  CLUS_3                        50                         159

Clustering(15) Variable = Amp Peak 15(9p13.3) mutation analysis
D15V1, multiclass
D15V2, multiclass
D15V3, multiclass
        clus
vv       AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  CLUS_1                          23                            49
  CLUS_2                          11                            40
  CLUS_3                          11                            18
  CLUS_4                          18                            36
D15V4, multiclass
        clus
vv       AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  CLUS_1                          29                            83
  CLUS_2                          27                            49
  CLUS_3                           7                            11
D15V5, multiclass
        clus
vv       AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  CLUS_1                          21                            97
  CLUS_2                          31                            60
  CLUS_3                          31                            59
D15V6, multiclass
        clus
vv       AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  CLUS_1                          33                            62
  CLUS_2                          26                            58
  CLUS_3                          24                            96
D15V7, multiclass
        clus
vv       AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  CLUS_1                          32                            81
  CLUS_2                          25                           112
  CLUS_3                          37                            64
D15V8, multiclass
        clus
vv       AMP PEAK 15(9P13.3) MUTATED AMP PEAK 15(9P13.3) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                          44                            89
  CLUS_3                          47                           162

Clustering(16) Variable = Amp Peak 16(11p13) mutation analysis
D16V1, multiclass
D16V2, multiclass
D16V3, multiclass
        clus
vv       AMP PEAK 16(11P13) MUTATED AMP PEAK 16(11P13) WILD-TYPE
  CLUS_1                         21                           51
  CLUS_2                         10                           41
  CLUS_3                          3                           26
  CLUS_4                         10                           44
D16V4, multiclass
        clus
vv       AMP PEAK 16(11P13) MUTATED AMP PEAK 16(11P13) WILD-TYPE
  CLUS_1                         17                           95
  CLUS_2                         22                           54
  CLUS_3                          5                           13
D16V5, multiclass
        clus
vv       AMP PEAK 16(11P13) MUTATED AMP PEAK 16(11P13) WILD-TYPE
  CLUS_1                         20                           98
  CLUS_2                         18                           73
  CLUS_3                         20                           70
D16V6, multiclass
        clus
vv       AMP PEAK 16(11P13) MUTATED AMP PEAK 16(11P13) WILD-TYPE
  CLUS_1                         22                           73
  CLUS_2                         19                           65
  CLUS_3                         17                          103
D16V7, multiclass
        clus
vv       AMP PEAK 16(11P13) MUTATED AMP PEAK 16(11P13) WILD-TYPE
  CLUS_1                         23                           90
  CLUS_2                         22                          115
  CLUS_3                         23                           78
D16V8, multiclass
        clus
vv       AMP PEAK 16(11P13) MUTATED AMP PEAK 16(11P13) WILD-TYPE
  CLUS_1                          5                            4
  CLUS_2                         27                          106
  CLUS_3                         36                          173

Clustering(17) Variable = Amp Peak 17(11q13.3) mutation analysis
D17V1, multiclass
D17V2, multiclass
D17V3, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           34                             38
  CLUS_2                           24                             27
  CLUS_3                           12                             17
  CLUS_4                           27                             27
D17V4, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           47                             65
  CLUS_2                           40                             36
  CLUS_3                           10                              8
D17V5, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           53                             65
  CLUS_2                           47                             44
  CLUS_3                           37                             53
D17V6, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           46                             49
  CLUS_2                           41                             43
  CLUS_3                           50                             70
D17V7, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                           50                             63
  CLUS_2                           62                             75
  CLUS_3                           51                             50
D17V8, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                            7                              2
  CLUS_2                           65                             68
  CLUS_3                           91                            118

Clustering(18) Variable = Amp Peak 18(12p13.33) mutation analysis
D18V1, multiclass
D18V2, multiclass
D18V3, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            29                              43
  CLUS_2                            22                              29
  CLUS_3                             7                              22
  CLUS_4                            17                              37
D18V4, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            36                              76
  CLUS_2                            31                              45
  CLUS_3                             8                              10
D18V5, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            49                              69
  CLUS_2                            38                              53
  CLUS_3                            21                              69
D18V6, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            38                              57
  CLUS_2                            17                              67
  CLUS_3                            53                              67
D18V7, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                            27                              86
  CLUS_2                            61                              76
  CLUS_3                            30                              71
D18V8, multiclass
        clus
vv       AMP PEAK 18(12P13.33) MUTATED AMP PEAK 18(12P13.33) WILD-TYPE
  CLUS_1                             4                               5
  CLUS_2                            43                              90
  CLUS_3                            71                             138

Clustering(19) Variable = Amp Peak 19(12q15) mutation analysis
D19V1, multiclass
D19V2, multiclass
D19V3, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         13                           59
  CLUS_2                         19                           32
  CLUS_3                          5                           24
  CLUS_4                         10                           44
D19V4, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         26                           86
  CLUS_2                         14                           62
  CLUS_3                          7                           11
D19V5, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         29                           89
  CLUS_2                         22                           69
  CLUS_3                         12                           78
D19V6, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         19                           76
  CLUS_2                         11                           73
  CLUS_3                         33                           87
D19V7, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                         19                           94
  CLUS_2                         31                          106
  CLUS_3                         22                           79
D19V8, multiclass
        clus
vv       AMP PEAK 19(12Q15) MUTATED AMP PEAK 19(12Q15) WILD-TYPE
  CLUS_1                          2                            7
  CLUS_2                         29                          104
  CLUS_3                         41                          168

Clustering(20) Variable = Amp Peak 20(13q22.1) mutation analysis
D20V1, multiclass
D20V2, multiclass
D20V3, multiclass
        clus
vv       AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  CLUS_1                           16                             56
  CLUS_2                           13                             38
  CLUS_3                            1                             28
  CLUS_4                           17                             37
D20V4, multiclass
        clus
vv       AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  CLUS_1                           22                             90
  CLUS_2                           18                             58
  CLUS_3                            7                             11
D20V5, multiclass
        clus
vv       AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  CLUS_1                           20                             98
  CLUS_2                           24                             67
  CLUS_3                           21                             69
D20V6, multiclass
        clus
vv       AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  CLUS_1                           28                             67
  CLUS_2                           15                             69
  CLUS_3                           22                             98
D20V7, multiclass
        clus
vv       AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  CLUS_1                           19                             94
  CLUS_2                           24                            113
  CLUS_3                           28                             73
D20V8, multiclass
        clus
vv       AMP PEAK 20(13Q22.1) MUTATED AMP PEAK 20(13Q22.1) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                           34                             99
  CLUS_3                           36                            173

Clustering(21) Variable = Amp Peak 21(15q26.3) mutation analysis
D21V1, multiclass
D21V2, multiclass
D21V3, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           15                             57
  CLUS_2                           15                             36
  CLUS_3                            3                             26
  CLUS_4                           12                             42
D21V4, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           22                             90
  CLUS_2                           18                             58
  CLUS_3                            5                             13
D21V5, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           25                             93
  CLUS_2                           20                             71
  CLUS_3                           21                             69
D21V6, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           17                             78
  CLUS_2                           22                             62
  CLUS_3                           27                             93
D21V7, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                           25                             88
  CLUS_2                           29                            108
  CLUS_3                           20                             81
D21V8, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                           25                            108
  CLUS_3                           46                            163

Clustering(22) Variable = Amp Peak 22(17q12) mutation analysis
D22V1, multiclass
D22V2, multiclass
D22V3, multiclass
        clus
vv       AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  CLUS_1                         11                           61
  CLUS_2                         12                           39
  CLUS_3                          5                           24
  CLUS_4                          8                           46
D22V4, multiclass
        clus
vv       AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  CLUS_1                         19                           93
  CLUS_2                         15                           61
  CLUS_3                          2                           16
D22V5, multiclass
        clus
vv       AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  CLUS_1                         29                           89
  CLUS_2                         13                           78
  CLUS_3                          9                           81
D22V6, multiclass
        clus
vv       AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  CLUS_1                         11                           84
  CLUS_2                         11                           73
  CLUS_3                         29                           91
D22V7, multiclass
        clus
vv       AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  CLUS_1                         16                           97
  CLUS_2                         34                          103
  CLUS_3                         13                           88
D22V8, multiclass
        clus
vv       AMP PEAK 22(17Q12) MUTATED AMP PEAK 22(17Q12) WILD-TYPE
  CLUS_1                          2                            7
  CLUS_2                         21                          112
  CLUS_3                         40                          169

Clustering(23) Variable = Amp Peak 23(18p11.31) mutation analysis
D23V1, multiclass
D23V2, multiclass
D23V3, multiclass
        clus
vv       AMP PEAK 23(18P11.31) MUTATED AMP PEAK 23(18P11.31) WILD-TYPE
  CLUS_1                            22                              50
  CLUS_2                            17                              34
  CLUS_3                             8                              21
  CLUS_4                            17                              37
D23V4, multiclass
        clus
vv       AMP PEAK 23(18P11.31) MUTATED AMP PEAK 23(18P11.31) WILD-TYPE
  CLUS_1                            34                              78
  CLUS_2                            23                              53
  CLUS_3                             7                              11
D23V5, multiclass
        clus
vv       AMP PEAK 23(18P11.31) MUTATED AMP PEAK 23(18P11.31) WILD-TYPE
  CLUS_1                            40                              78
  CLUS_2                            33                              58
  CLUS_3                            23                              67
D23V6, multiclass
        clus
vv       AMP PEAK 23(18P11.31) MUTATED AMP PEAK 23(18P11.31) WILD-TYPE
  CLUS_1                            31                              64
  CLUS_2                            21                              63
  CLUS_3                            44                              76
D23V7, multiclass
        clus
vv       AMP PEAK 23(18P11.31) MUTATED AMP PEAK 23(18P11.31) WILD-TYPE
  CLUS_1                            31                              82
  CLUS_2                            46                              91
  CLUS_3                            30                              71
D23V8, multiclass
        clus
vv       AMP PEAK 23(18P11.31) MUTATED AMP PEAK 23(18P11.31) WILD-TYPE
  CLUS_1                             3                               6
  CLUS_2                            41                              92
  CLUS_3                            63                             146

Clustering(24) Variable = Amp Peak 24(18q11.2) mutation analysis
D24V1, multiclass
D24V2, multiclass
D24V3, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           19                             53
  CLUS_2                           11                             40
  CLUS_3                            2                             27
  CLUS_4                           13                             41
D24V4, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           21                             91
  CLUS_2                           19                             57
  CLUS_3                            5                             13
D24V5, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           28                             90
  CLUS_2                           21                             70
  CLUS_3                           21                             69
D24V6, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           20                             75
  CLUS_2                           19                             65
  CLUS_3                           31                             89
D24V7, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                           18                             95
  CLUS_2                           35                            102
  CLUS_3                           20                             81
D24V8, multiclass
        clus
vv       AMP PEAK 24(18Q11.2) MUTATED AMP PEAK 24(18Q11.2) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                           27                            106
  CLUS_3                           46                            163

Clustering(25) Variable = Amp Peak 25(20q11.22) mutation analysis
D25V1, multiclass
D25V2, multiclass
D25V3, multiclass
        clus
vv       AMP PEAK 25(20Q11.22) MUTATED AMP PEAK 25(20Q11.22) WILD-TYPE
  CLUS_1                            34                              38
  CLUS_2                            24                              27
  CLUS_3                            11                              18
  CLUS_4                            24                              30
D25V4, multiclass
        clus
vv       AMP PEAK 25(20Q11.22) MUTATED AMP PEAK 25(20Q11.22) WILD-TYPE
  CLUS_1                            46                              66
  CLUS_2                            38                              38
  CLUS_3                             9                               9
D25V5, multiclass
        clus
vv       AMP PEAK 25(20Q11.22) MUTATED AMP PEAK 25(20Q11.22) WILD-TYPE
  CLUS_1                            49                              69
  CLUS_2                            54                              37
  CLUS_3                            36                              54
D25V6, multiclass
        clus
vv       AMP PEAK 25(20Q11.22) MUTATED AMP PEAK 25(20Q11.22) WILD-TYPE
  CLUS_1                            53                              42
  CLUS_2                            34                              50
  CLUS_3                            52                              68
D25V7, multiclass
        clus
vv       AMP PEAK 25(20Q11.22) MUTATED AMP PEAK 25(20Q11.22) WILD-TYPE
  CLUS_1                            45                              68
  CLUS_2                            58                              79
  CLUS_3                            51                              50
D25V8, multiclass
        clus
vv       AMP PEAK 25(20Q11.22) MUTATED AMP PEAK 25(20Q11.22) WILD-TYPE
  CLUS_1                             4                               5
  CLUS_2                            71                              62
  CLUS_3                            79                             130

Clustering(26) Variable = Del Peak  1(1p36.13) mutation analysis
D26V1, multiclass
D26V2, multiclass
D26V3, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           13                             59
  CLUS_2                           19                             32
  CLUS_3                            3                             26
  CLUS_4                           10                             44
D26V4, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           27                             85
  CLUS_2                           15                             61
  CLUS_3                            3                             15
D26V5, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           39                             79
  CLUS_2                           17                             74
  CLUS_3                            7                             83
D26V6, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           16                             79
  CLUS_2                            9                             75
  CLUS_3                           38                             82
D26V7, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           16                             97
  CLUS_2                           41                             96
  CLUS_3                           11                             90
D26V8, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                           19                            114
  CLUS_3                           47                            162

Clustering(27) Variable = Del Peak  2(1p13.2) mutation analysis
D27V1, multiclass
D27V2, multiclass
D27V3, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          14                            58
  CLUS_2                          19                            32
  CLUS_3                           4                            25
  CLUS_4                          21                            33
D27V4, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          37                            75
  CLUS_2                          15                            61
  CLUS_3                           6                            12
D27V5, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          40                            78
  CLUS_2                          22                            69
  CLUS_3                          13                            77
D27V6, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          21                            74
  CLUS_2                          16                            68
  CLUS_3                          38                            82
D27V7, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                          16                            97
  CLUS_2                          50                            87
  CLUS_3                          19                            82
D27V8, multiclass
        clus
vv       DEL PEAK  2(1P13.2) MUTATED DEL PEAK  2(1P13.2) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                          33                           100
  CLUS_3                          51                           158

Clustering(28) Variable = Del Peak  3(1q44) mutation analysis
D28V1, multiclass
D28V2, multiclass
D28V3, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         5                          67
  CLUS_2                         5                          46
  CLUS_3                         2                          27
  CLUS_4                         6                          48
D28V4, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        11                         101
  CLUS_2                         6                          70
  CLUS_3                         1                          17
D28V5, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         4                         114
  CLUS_2                        10                          81
  CLUS_3                         9                          81
D28V6, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        10                          85
  CLUS_2                        10                          74
  CLUS_3                         3                         117
D28V7, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        15                          98
  CLUS_2                         4                         133
  CLUS_3                        11                          90
D28V8, multiclass
        clus
vv       DEL PEAK  3(1Q44) MUTATED DEL PEAK  3(1Q44) WILD-TYPE
  CLUS_1                         1                           8
  CLUS_2                        15                         118
  CLUS_3                        14                         195

Clustering(29) Variable = Del Peak  4(2q21.2) mutation analysis
D29V1, multiclass
D29V2, multiclass
D29V3, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                          10                            62
  CLUS_2                           5                            46
  CLUS_3                           4                            25
  CLUS_4                           6                            48
D29V4, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                          14                            98
  CLUS_2                           9                            67
  CLUS_3                           2                            16
D29V5, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                          11                           107
  CLUS_2                           7                            84
  CLUS_3                          19                            71
D29V6, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                           8                            87
  CLUS_2                          19                            65
  CLUS_3                          10                           110
D29V7, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                          26                            87
  CLUS_2                          15                           122
  CLUS_3                           5                            96
D29V8, multiclass
        clus
vv       DEL PEAK  4(2Q21.2) MUTATED DEL PEAK  4(2Q21.2) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                          12                           121
  CLUS_3                          32                           177

Clustering(30) Variable = Del Peak  5(2q22.1) mutation analysis
D30V1, multiclass
D30V2, multiclass
D30V3, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          13                            59
  CLUS_2                          15                            36
  CLUS_3                           5                            24
  CLUS_4                           8                            46
D30V4, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          23                            89
  CLUS_2                          13                            63
  CLUS_3                           5                            13
D30V5, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          29                            89
  CLUS_2                          11                            80
  CLUS_3                          21                            69
D30V6, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          11                            84
  CLUS_2                          21                            63
  CLUS_3                          29                            91
D30V7, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                          24                            89
  CLUS_2                          38                            99
  CLUS_3                          16                            85
D30V8, multiclass
        clus
vv       DEL PEAK  5(2Q22.1) MUTATED DEL PEAK  5(2Q22.1) WILD-TYPE
  CLUS_1                           4                             5
  CLUS_2                          22                           111
  CLUS_3                          52                           157

Clustering(31) Variable = Del Peak  6(2q36.2) mutation analysis
D31V1, multiclass
D31V2, multiclass
D31V3, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          21                            51
  CLUS_2                          20                            31
  CLUS_3                           4                            25
  CLUS_4                          17                            37
D31V4, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          35                            77
  CLUS_2                          20                            56
  CLUS_3                           7                            11
D31V5, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          51                            67
  CLUS_2                          21                            70
  CLUS_3                          19                            71
D31V6, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          17                            78
  CLUS_2                          25                            59
  CLUS_3                          49                            71
D31V7, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                          31                            82
  CLUS_2                          53                            84
  CLUS_3                          19                            82
D31V8, multiclass
        clus
vv       DEL PEAK  6(2Q36.2) MUTATED DEL PEAK  6(2Q36.2) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                          32                           101
  CLUS_3                          68                           141

Clustering(32) Variable = Del Peak  7(3p25.3) mutation analysis
D32V1, multiclass
D32V2, multiclass
D32V3, multiclass
        clus
vv       DEL PEAK  7(3P25.3) MUTATED DEL PEAK  7(3P25.3) WILD-TYPE
  CLUS_1                          51                            21
  CLUS_2                          36                            15
  CLUS_3                          21                             8
  CLUS_4                          46                             8
D32V4, multiclass
        clus
vv       DEL PEAK  7(3P25.3) MUTATED DEL PEAK  7(3P25.3) WILD-TYPE
  CLUS_1                          83                            29
  CLUS_2                          55                            21
  CLUS_3                          16                             2
D32V5, multiclass
        clus
vv       DEL PEAK  7(3P25.3) MUTATED DEL PEAK  7(3P25.3) WILD-TYPE
  CLUS_1                          76                            42
  CLUS_2                          75                            16
  CLUS_3                          63                            27
D32V6, multiclass
        clus
vv       DEL PEAK  7(3P25.3) MUTATED DEL PEAK  7(3P25.3) WILD-TYPE
  CLUS_1                          76                            19
  CLUS_2                          59                            25
  CLUS_3                          79                            41
D32V7, multiclass
        clus
vv       DEL PEAK  7(3P25.3) MUTATED DEL PEAK  7(3P25.3) WILD-TYPE
  CLUS_1                          72                            41
  CLUS_2                          97                            40
  CLUS_3                          77                            24
D32V8, multiclass
        clus
vv       DEL PEAK  7(3P25.3) MUTATED DEL PEAK  7(3P25.3) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                         104                            29
  CLUS_3                         140                            69

Clustering(33) Variable = Del Peak  8(3p14.2) mutation analysis
D33V1, multiclass
D33V2, multiclass
D33V3, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          53                            19
  CLUS_2                          41                            10
  CLUS_3                          20                             9
  CLUS_4                          46                             8
D33V4, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          87                            25
  CLUS_2                          57                            19
  CLUS_3                          16                             2
D33V5, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          88                            30
  CLUS_2                          76                            15
  CLUS_3                          64                            26
D33V6, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          77                            18
  CLUS_2                          58                            26
  CLUS_3                          93                            27
D33V7, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                          80                            33
  CLUS_2                         104                            33
  CLUS_3                          78                            23
D33V8, multiclass
        clus
vv       DEL PEAK  8(3P14.2) MUTATED DEL PEAK  8(3P14.2) WILD-TYPE
  CLUS_1                           4                             5
  CLUS_2                         106                            27
  CLUS_3                         152                            57

Clustering(34) Variable = Del Peak  9(3p14.2) mutation analysis
D34V1, multiclass
D34V2, multiclass
D34V3, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          52                            20
  CLUS_2                          41                            10
  CLUS_3                          20                             9
  CLUS_4                          46                             8
D34V4, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          87                            25
  CLUS_2                          56                            20
  CLUS_3                          16                             2
D34V5, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          88                            30
  CLUS_2                          76                            15
  CLUS_3                          64                            26
D34V6, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          77                            18
  CLUS_2                          58                            26
  CLUS_3                          93                            27
D34V7, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                          80                            33
  CLUS_2                         104                            33
  CLUS_3                          78                            23
D34V8, multiclass
        clus
vv       DEL PEAK  9(3P14.2) MUTATED DEL PEAK  9(3P14.2) WILD-TYPE
  CLUS_1                           4                             5
  CLUS_2                         106                            27
  CLUS_3                         152                            57

Clustering(35) Variable = Del Peak 10(3p12.2) mutation analysis
D35V1, multiclass
D35V2, multiclass
D35V3, multiclass
        clus
vv       DEL PEAK 10(3P12.2) MUTATED DEL PEAK 10(3P12.2) WILD-TYPE
  CLUS_1                          51                            21
  CLUS_2                          37                            14
  CLUS_3                          21                             8
  CLUS_4                          42                            12
D35V4, multiclass
        clus
vv       DEL PEAK 10(3P12.2) MUTATED DEL PEAK 10(3P12.2) WILD-TYPE
  CLUS_1                          81                            31
  CLUS_2                          55                            21
  CLUS_3                          15                             3
D35V5, multiclass
        clus
vv       DEL PEAK 10(3P12.2) MUTATED DEL PEAK 10(3P12.2) WILD-TYPE
  CLUS_1                          85                            33
  CLUS_2                          70                            21
  CLUS_3                          59                            31
D35V6, multiclass
        clus
vv       DEL PEAK 10(3P12.2) MUTATED DEL PEAK 10(3P12.2) WILD-TYPE
  CLUS_1                          71                            24
  CLUS_2                          56                            28
  CLUS_3                          87                            33
D35V7, multiclass
        clus
vv       DEL PEAK 10(3P12.2) MUTATED DEL PEAK 10(3P12.2) WILD-TYPE
  CLUS_1                          74                            39
  CLUS_2                         102                            35
  CLUS_3                          72                            29
D35V8, multiclass
        clus
vv       DEL PEAK 10(3P12.2) MUTATED DEL PEAK 10(3P12.2) WILD-TYPE
  CLUS_1                           4                             5
  CLUS_2                          98                            35
  CLUS_3                         146                            63

Clustering(36) Variable = Del Peak 11(4p15.2) mutation analysis
D36V1, multiclass
D36V2, multiclass
D36V3, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          34                            38
  CLUS_2                          29                            22
  CLUS_3                           8                            21
  CLUS_4                          20                            34
D36V4, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          46                            66
  CLUS_2                          33                            43
  CLUS_3                          12                             6
D36V5, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          60                            58
  CLUS_2                          39                            52
  CLUS_3                          30                            60
D36V6, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          41                            54
  CLUS_2                          26                            58
  CLUS_3                          62                            58
D36V7, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                          43                            70
  CLUS_2                          72                            65
  CLUS_3                          34                            67
D36V8, multiclass
        clus
vv       DEL PEAK 11(4P15.2) MUTATED DEL PEAK 11(4P15.2) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                          53                            80
  CLUS_3                          93                           116

Clustering(37) Variable = Del Peak 12(4q22.1) mutation analysis
D37V1, multiclass
D37V2, multiclass
D37V3, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          26                            46
  CLUS_2                          22                            29
  CLUS_3                           5                            24
  CLUS_4                          19                            35
D37V4, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          39                            73
  CLUS_2                          25                            51
  CLUS_3                           8                            10
D37V5, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          42                            76
  CLUS_2                          31                            60
  CLUS_3                          24                            66
D37V6, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          32                            63
  CLUS_2                          21                            63
  CLUS_3                          44                            76
D37V7, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                          33                            80
  CLUS_2                          52                            85
  CLUS_3                          31                            70
D37V8, multiclass
        clus
vv       DEL PEAK 12(4Q22.1) MUTATED DEL PEAK 12(4Q22.1) WILD-TYPE
  CLUS_1                           4                             5
  CLUS_2                          45                            88
  CLUS_3                          67                           142

Clustering(38) Variable = Del Peak 13(4q35.2) mutation analysis
D38V1, multiclass
D38V2, multiclass
D38V3, multiclass
        clus
vv       DEL PEAK 13(4Q35.2) MUTATED DEL PEAK 13(4Q35.2) WILD-TYPE
  CLUS_1                          34                            38
  CLUS_2                          23                            28
  CLUS_3                           7                            22
  CLUS_4                          28                            26
D38V4, multiclass
        clus
vv       DEL PEAK 13(4Q35.2) MUTATED DEL PEAK 13(4Q35.2) WILD-TYPE
  CLUS_1                          47                            65
  CLUS_2                          35                            41
  CLUS_3                          10                             8
D38V5, multiclass
        clus
vv       DEL PEAK 13(4Q35.2) MUTATED DEL PEAK 13(4Q35.2) WILD-TYPE
  CLUS_1                          49                            69
  CLUS_2                          42                            49
  CLUS_3                          31                            59
D38V6, multiclass
        clus
vv       DEL PEAK 13(4Q35.2) MUTATED DEL PEAK 13(4Q35.2) WILD-TYPE
  CLUS_1                          44                            51
  CLUS_2                          30                            54
  CLUS_3                          48                            72
D38V7, multiclass
        clus
vv       DEL PEAK 13(4Q35.2) MUTATED DEL PEAK 13(4Q35.2) WILD-TYPE
  CLUS_1                          39                            74
  CLUS_2                          62                            75
  CLUS_3                          43                            58
D38V8, multiclass
        clus
vv       DEL PEAK 13(4Q35.2) MUTATED DEL PEAK 13(4Q35.2) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                          60                            73
  CLUS_3                          81                           128

Clustering(39) Variable = Del Peak 14(5q11.2) mutation analysis
D39V1, multiclass
D39V2, multiclass
D39V3, multiclass
        clus
vv       DEL PEAK 14(5Q11.2) MUTATED DEL PEAK 14(5Q11.2) WILD-TYPE
  CLUS_1                          28                            44
  CLUS_2                          27                            24
  CLUS_3                           7                            22
  CLUS_4                          30                            24
D39V4, multiclass
        clus
vv       DEL PEAK 14(5Q11.2) MUTATED DEL PEAK 14(5Q11.2) WILD-TYPE
  CLUS_1                          48                            64
  CLUS_2                          34                            42
  CLUS_3                          10                             8
D39V5, multiclass
        clus
vv       DEL PEAK 14(5Q11.2) MUTATED DEL PEAK 14(5Q11.2) WILD-TYPE
  CLUS_1                          55                            63
  CLUS_2                          45                            46
  CLUS_3                          29                            61
D39V6, multiclass
        clus
vv       DEL PEAK 14(5Q11.2) MUTATED DEL PEAK 14(5Q11.2) WILD-TYPE
  CLUS_1                          45                            50
  CLUS_2                          22                            62
  CLUS_3                          62                            58
D39V7, multiclass
        clus
vv       DEL PEAK 14(5Q11.2) MUTATED DEL PEAK 14(5Q11.2) WILD-TYPE
  CLUS_1                          36                            77
  CLUS_2                          63                            74
  CLUS_3                          42                            59
D39V8, multiclass
        clus
vv       DEL PEAK 14(5Q11.2) MUTATED DEL PEAK 14(5Q11.2) WILD-TYPE
  CLUS_1                           4                             5
  CLUS_2                          58                            75
  CLUS_3                          79                           130

Clustering(40) Variable = Del Peak 15(5q35.3) mutation analysis
D40V1, multiclass
D40V2, multiclass
D40V3, multiclass
        clus
vv       DEL PEAK 15(5Q35.3) MUTATED DEL PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          26                            46
  CLUS_2                          23                            28
  CLUS_3                           9                            20
  CLUS_4                          25                            29
D40V4, multiclass
        clus
vv       DEL PEAK 15(5Q35.3) MUTATED DEL PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          42                            70
  CLUS_2                          29                            47
  CLUS_3                          12                             6
D40V5, multiclass
        clus
vv       DEL PEAK 15(5Q35.3) MUTATED DEL PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          55                            63
  CLUS_2                          40                            51
  CLUS_3                          25                            65
D40V6, multiclass
        clus
vv       DEL PEAK 15(5Q35.3) MUTATED DEL PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          39                            56
  CLUS_2                          20                            64
  CLUS_3                          61                            59
D40V7, multiclass
        clus
vv       DEL PEAK 15(5Q35.3) MUTATED DEL PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                          36                            77
  CLUS_2                          58                            79
  CLUS_3                          39                            62
D40V8, multiclass
        clus
vv       DEL PEAK 15(5Q35.3) MUTATED DEL PEAK 15(5Q35.3) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                          54                            79
  CLUS_3                          76                           133

Clustering(41) Variable = Del Peak 16(6p25.3) mutation analysis
D41V1, multiclass
D41V2, multiclass
D41V3, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          15                            57
  CLUS_2                          11                            40
  CLUS_3                           2                            27
  CLUS_4                          17                            37
D41V4, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          25                            87
  CLUS_2                          13                            63
  CLUS_3                           7                            11
D41V5, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          29                            89
  CLUS_2                          24                            67
  CLUS_3                           9                            81
D41V6, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          21                            74
  CLUS_2                          13                            71
  CLUS_3                          28                            92
D41V7, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                          15                            98
  CLUS_2                          32                           105
  CLUS_3                          21                            80
D41V8, multiclass
        clus
vv       DEL PEAK 16(6P25.3) MUTATED DEL PEAK 16(6P25.3) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                          28                           105
  CLUS_3                          39                           170

Clustering(42) Variable = Del Peak 17(7q31.1) mutation analysis
D42V1, multiclass
D42V2, multiclass
D42V3, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                          14                            58
  CLUS_2                          12                            39
  CLUS_3                           3                            26
  CLUS_4                           5                            49
D42V4, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                          16                            96
  CLUS_2                          15                            61
  CLUS_3                           3                            15
D42V5, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                          15                           103
  CLUS_2                          15                            76
  CLUS_3                          18                            72
D42V6, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                          13                            82
  CLUS_2                          16                            68
  CLUS_3                          19                           101
D42V7, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                          20                            93
  CLUS_2                          21                           116
  CLUS_3                          13                            88
D42V8, multiclass
        clus
vv       DEL PEAK 17(7Q31.1) MUTATED DEL PEAK 17(7Q31.1) WILD-TYPE
  CLUS_1                           2                             7
  CLUS_2                          17                           116
  CLUS_3                          35                           174

Clustering(43) Variable = Del Peak 18(7q36.1) mutation analysis
D43V1, multiclass
D43V2, multiclass
D43V3, multiclass
        clus
vv       DEL PEAK 18(7Q36.1) MUTATED DEL PEAK 18(7Q36.1) WILD-TYPE
  CLUS_1                          21                            51
  CLUS_2                          22                            29
  CLUS_3                           3                            26
  CLUS_4                          10                            44
D43V4, multiclass
        clus
vv       DEL PEAK 18(7Q36.1) MUTATED DEL PEAK 18(7Q36.1) WILD-TYPE
  CLUS_1                          26                            86
  CLUS_2                          23                            53
  CLUS_3                           7                            11
D43V5, multiclass
        clus
vv       DEL PEAK 18(7Q36.1) MUTATED DEL PEAK 18(7Q36.1) WILD-TYPE
  CLUS_1                          31                            87
  CLUS_2                          24                            67
  CLUS_3                          22                            68
D43V6, multiclass
        clus
vv       DEL PEAK 18(7Q36.1) MUTATED DEL PEAK 18(7Q36.1) WILD-TYPE
  CLUS_1                          22                            73
  CLUS_2                          21                            63
  CLUS_3                          34                            86
D43V7, multiclass
        clus
vv       DEL PEAK 18(7Q36.1) MUTATED DEL PEAK 18(7Q36.1) WILD-TYPE
  CLUS_1                          29                            84
  CLUS_2                          34                           103
  CLUS_3                          23                            78
D43V8, multiclass
        clus
vv       DEL PEAK 18(7Q36.1) MUTATED DEL PEAK 18(7Q36.1) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                          28                           105
  CLUS_3                          55                           154

Clustering(44) Variable = Del Peak 19(8p23.2) mutation analysis
D44V1, multiclass
D44V2, multiclass
D44V3, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                          50                            22
  CLUS_2                          25                            26
  CLUS_3                          16                            13
  CLUS_4                          33                            21
D44V4, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                          62                            50
  CLUS_2                          52                            24
  CLUS_3                          10                             8
D44V5, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                          56                            62
  CLUS_2                          61                            30
  CLUS_3                          53                            37
D44V6, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                          66                            29
  CLUS_2                          48                            36
  CLUS_3                          56                            64
D44V7, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                          69                            44
  CLUS_2                          69                            68
  CLUS_3                          63                            38
D44V8, multiclass
        clus
vv       DEL PEAK 19(8P23.2) MUTATED DEL PEAK 19(8P23.2) WILD-TYPE
  CLUS_1                           6                             3
  CLUS_2                          86                            47
  CLUS_3                         109                           100

Clustering(45) Variable = Del Peak 20(9p23) mutation analysis
D45V1, multiclass
D45V2, multiclass
D45V3, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        33                          39
  CLUS_2                        26                          25
  CLUS_3                        11                          18
  CLUS_4                        29                          25
D45V4, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        56                          56
  CLUS_2                        35                          41
  CLUS_3                         8                          10
D45V5, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        59                          59
  CLUS_2                        41                          50
  CLUS_3                        41                          49
D45V6, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        40                          55
  CLUS_2                        42                          42
  CLUS_3                        59                          61
D45V7, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                        49                          64
  CLUS_2                        65                          72
  CLUS_3                        46                          55
D45V8, multiclass
        clus
vv       DEL PEAK 20(9P23) MUTATED DEL PEAK 20(9P23) WILD-TYPE
  CLUS_1                         5                           4
  CLUS_2                        58                          75
  CLUS_3                        97                         112

Clustering(46) Variable = Del Peak 21(9p21.3) mutation analysis
D46V1, multiclass
D46V2, multiclass
D46V3, multiclass
        clus
vv       DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  CLUS_1                          46                            26
  CLUS_2                          30                            21
  CLUS_3                          17                            12
  CLUS_4                          37                            17
D46V4, multiclass
        clus
vv       DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  CLUS_1                          69                            43
  CLUS_2                          47                            29
  CLUS_3                          14                             4
D46V5, multiclass
        clus
vv       DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  CLUS_1                          64                            54
  CLUS_2                          58                            33
  CLUS_3                          53                            37
D46V6, multiclass
        clus
vv       DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  CLUS_1                          59                            36
  CLUS_2                          51                            33
  CLUS_3                          65                            55
D46V7, multiclass
        clus
vv       DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  CLUS_1                          63                            50
  CLUS_2                          79                            58
  CLUS_3                          62                            39
D46V8, multiclass
        clus
vv       DEL PEAK 21(9P21.3) MUTATED DEL PEAK 21(9P21.3) WILD-TYPE
  CLUS_1                           6                             3
  CLUS_2                          81                            52
  CLUS_3                         117                            92

Clustering(47) Variable = Del Peak 22(9q21.11) mutation analysis
D47V1, multiclass
D47V2, multiclass
D47V3, multiclass
        clus
vv       DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE
  CLUS_1                           12                             60
  CLUS_2                           10                             41
  CLUS_3                            6                             23
  CLUS_4                           10                             44
D47V4, multiclass
        clus
vv       DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE
  CLUS_1                           22                             90
  CLUS_2                           13                             63
  CLUS_3                            3                             15
D47V5, multiclass
        clus
vv       DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE
  CLUS_1                           24                             94
  CLUS_2                           16                             75
  CLUS_3                           17                             73
D47V6, multiclass
        clus
vv       DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE
  CLUS_1                           16                             79
  CLUS_2                           15                             69
  CLUS_3                           26                             94
D47V7, multiclass
        clus
vv       DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE
  CLUS_1                           23                             90
  CLUS_2                           26                            111
  CLUS_3                           16                             85
D47V8, multiclass
        clus
vv       DEL PEAK 22(9Q21.11) MUTATED DEL PEAK 22(9Q21.11) WILD-TYPE
  CLUS_1                            5                              4
  CLUS_2                           19                            114
  CLUS_3                           41                            168

Clustering(48) Variable = Del Peak 23(9q34.3) mutation analysis
D48V1, multiclass
D48V2, multiclass
D48V3, multiclass
        clus
vv       DEL PEAK 23(9Q34.3) MUTATED DEL PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          10                            62
  CLUS_2                          10                            41
  CLUS_3                           3                            26
  CLUS_4                           9                            45
D48V4, multiclass
        clus
vv       DEL PEAK 23(9Q34.3) MUTATED DEL PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          21                            91
  CLUS_2                          11                            65
  CLUS_3                           0                            18
D48V5, multiclass
        clus
vv       DEL PEAK 23(9Q34.3) MUTATED DEL PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          20                            98
  CLUS_2                          16                            75
  CLUS_3                          13                            77
D48V6, multiclass
        clus
vv       DEL PEAK 23(9Q34.3) MUTATED DEL PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          18                            77
  CLUS_2                          10                            74
  CLUS_3                          21                            99
D48V7, multiclass
        clus
vv       DEL PEAK 23(9Q34.3) MUTATED DEL PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                          13                           100
  CLUS_2                          25                           112
  CLUS_3                          18                            83
D48V8, multiclass
        clus
vv       DEL PEAK 23(9Q34.3) MUTATED DEL PEAK 23(9Q34.3) WILD-TYPE
  CLUS_1                           4                             5
  CLUS_2                          21                           112
  CLUS_3                          31                           178

Clustering(49) Variable = Del Peak 24(10p15.3) mutation analysis
D49V1, multiclass
D49V2, multiclass
D49V3, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                           30                             42
  CLUS_2                           16                             35
  CLUS_3                           10                             19
  CLUS_4                           16                             38
D49V4, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                           34                             78
  CLUS_2                           33                             43
  CLUS_3                            5                             13
D49V5, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                           35                             83
  CLUS_2                           36                             55
  CLUS_3                           31                             59
D49V6, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                           38                             57
  CLUS_2                           28                             56
  CLUS_3                           36                             84
D49V7, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                           32                             81
  CLUS_2                           43                             94
  CLUS_3                           39                             62
D49V8, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                           47                             86
  CLUS_3                           65                            144

Clustering(50) Variable = Del Peak 25(10p11.21) mutation analysis
D50V1, multiclass
D50V2, multiclass
D50V3, multiclass
        clus
vv       DEL PEAK 25(10P11.21) MUTATED DEL PEAK 25(10P11.21) WILD-TYPE
  CLUS_1                            30                              42
  CLUS_2                            16                              35
  CLUS_3                            10                              19
  CLUS_4                            13                              41
D50V4, multiclass
        clus
vv       DEL PEAK 25(10P11.21) MUTATED DEL PEAK 25(10P11.21) WILD-TYPE
  CLUS_1                            32                              80
  CLUS_2                            33                              43
  CLUS_3                             4                              14
D50V5, multiclass
        clus
vv       DEL PEAK 25(10P11.21) MUTATED DEL PEAK 25(10P11.21) WILD-TYPE
  CLUS_1                            37                              81
  CLUS_2                            33                              58
  CLUS_3                            28                              62
D50V6, multiclass
        clus
vv       DEL PEAK 25(10P11.21) MUTATED DEL PEAK 25(10P11.21) WILD-TYPE
  CLUS_1                            32                              63
  CLUS_2                            27                              57
  CLUS_3                            39                              81
D50V7, multiclass
        clus
vv       DEL PEAK 25(10P11.21) MUTATED DEL PEAK 25(10P11.21) WILD-TYPE
  CLUS_1                            30                              83
  CLUS_2                            45                              92
  CLUS_3                            32                              69
D50V8, multiclass
        clus
vv       DEL PEAK 25(10P11.21) MUTATED DEL PEAK 25(10P11.21) WILD-TYPE
  CLUS_1                             1                               8
  CLUS_2                            41                              92
  CLUS_3                            65                             144

Clustering(51) Variable = Del Peak 26(10q23.31) mutation analysis
D51V1, multiclass
D51V2, multiclass
D51V3, multiclass
        clus
vv       DEL PEAK 26(10Q23.31) MUTATED DEL PEAK 26(10Q23.31) WILD-TYPE
  CLUS_1                            22                              50
  CLUS_2                            18                              33
  CLUS_3                             4                              25
  CLUS_4                            13                              41
D51V4, multiclass
        clus
vv       DEL PEAK 26(10Q23.31) MUTATED DEL PEAK 26(10Q23.31) WILD-TYPE
  CLUS_1                            31                              81
  CLUS_2                            23                              53
  CLUS_3                             3                              15
D51V5, multiclass
        clus
vv       DEL PEAK 26(10Q23.31) MUTATED DEL PEAK 26(10Q23.31) WILD-TYPE
  CLUS_1                            39                              79
  CLUS_2                            26                              65
  CLUS_3                            15                              75
D51V6, multiclass
        clus
vv       DEL PEAK 26(10Q23.31) MUTATED DEL PEAK 26(10Q23.31) WILD-TYPE
  CLUS_1                            24                              71
  CLUS_2                            14                              70
  CLUS_3                            42                              78
D51V7, multiclass
        clus
vv       DEL PEAK 26(10Q23.31) MUTATED DEL PEAK 26(10Q23.31) WILD-TYPE
  CLUS_1                            24                              89
  CLUS_2                            45                              92
  CLUS_3                            20                              81
D51V8, multiclass
        clus
vv       DEL PEAK 26(10Q23.31) MUTATED DEL PEAK 26(10Q23.31) WILD-TYPE
  CLUS_1                             1                               8
  CLUS_2                            33                             100
  CLUS_3                            55                             154

Clustering(52) Variable = Del Peak 27(11p15.4) mutation analysis
D52V1, multiclass
D52V2, multiclass
D52V3, multiclass
        clus
vv       DEL PEAK 27(11P15.4) MUTATED DEL PEAK 27(11P15.4) WILD-TYPE
  CLUS_1                           24                             48
  CLUS_2                           19                             32
  CLUS_3                            6                             23
  CLUS_4                           19                             35
D52V4, multiclass
        clus
vv       DEL PEAK 27(11P15.4) MUTATED DEL PEAK 27(11P15.4) WILD-TYPE
  CLUS_1                           34                             78
  CLUS_2                           26                             50
  CLUS_3                            8                             10
D52V5, multiclass
        clus
vv       DEL PEAK 27(11P15.4) MUTATED DEL PEAK 27(11P15.4) WILD-TYPE
  CLUS_1                           51                             67
  CLUS_2                           26                             65
  CLUS_3                           19                             71
D52V6, multiclass
        clus
vv       DEL PEAK 27(11P15.4) MUTATED DEL PEAK 27(11P15.4) WILD-TYPE
  CLUS_1                           25                             70
  CLUS_2                           20                             64
  CLUS_3                           51                             69
D52V7, multiclass
        clus
vv       DEL PEAK 27(11P15.4) MUTATED DEL PEAK 27(11P15.4) WILD-TYPE
  CLUS_1                           27                             86
  CLUS_2                           59                             78
  CLUS_3                           24                             77
D52V8, multiclass
        clus
vv       DEL PEAK 27(11P15.4) MUTATED DEL PEAK 27(11P15.4) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                           36                             97
  CLUS_3                           71                            138

Clustering(53) Variable = Del Peak 28(11q14.1) mutation analysis
D53V1, multiclass
D53V2, multiclass
D53V3, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           21                             51
  CLUS_2                           22                             29
  CLUS_3                            6                             23
  CLUS_4                           17                             37
D53V4, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           36                             76
  CLUS_2                           23                             53
  CLUS_3                            7                             11
D53V5, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           48                             70
  CLUS_2                           30                             61
  CLUS_3                           19                             71
D53V6, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           27                             68
  CLUS_2                           21                             63
  CLUS_3                           49                             71
D53V7, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                           35                             78
  CLUS_2                           48                             89
  CLUS_3                           28                             73
D53V8, multiclass
        clus
vv       DEL PEAK 28(11Q14.1) MUTATED DEL PEAK 28(11Q14.1) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                           39                             94
  CLUS_3                           68                            141

Clustering(54) Variable = Del Peak 29(11q23.1) mutation analysis
D54V1, multiclass
D54V2, multiclass
D54V3, multiclass
        clus
vv       DEL PEAK 29(11Q23.1) MUTATED DEL PEAK 29(11Q23.1) WILD-TYPE
  CLUS_1                           34                             38
  CLUS_2                           30                             21
  CLUS_3                           10                             19
  CLUS_4                           23                             31
D54V4, multiclass
        clus
vv       DEL PEAK 29(11Q23.1) MUTATED DEL PEAK 29(11Q23.1) WILD-TYPE
  CLUS_1                           55                             57
  CLUS_2                           37                             39
  CLUS_3                            5                             13
D54V5, multiclass
        clus
vv       DEL PEAK 29(11Q23.1) MUTATED DEL PEAK 29(11Q23.1) WILD-TYPE
  CLUS_1                           73                             45
  CLUS_2                           40                             51
  CLUS_3                           33                             57
D54V6, multiclass
        clus
vv       DEL PEAK 29(11Q23.1) MUTATED DEL PEAK 29(11Q23.1) WILD-TYPE
  CLUS_1                           37                             58
  CLUS_2                           33                             51
  CLUS_3                           76                             44
D54V7, multiclass
        clus
vv       DEL PEAK 29(11Q23.1) MUTATED DEL PEAK 29(11Q23.1) WILD-TYPE
  CLUS_1                           51                             62
  CLUS_2                           75                             62
  CLUS_3                           43                             58
D54V8, multiclass
        clus
vv       DEL PEAK 29(11Q23.1) MUTATED DEL PEAK 29(11Q23.1) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                           57                             76
  CLUS_3                          108                            101

Clustering(55) Variable = Del Peak 30(12q24.33) mutation analysis
D55V1, multiclass
D55V2, multiclass
D55V3, multiclass
        clus
vv       DEL PEAK 30(12Q24.33) MUTATED DEL PEAK 30(12Q24.33) WILD-TYPE
  CLUS_1                            11                              61
  CLUS_2                             8                              43
  CLUS_3                             0                              29
  CLUS_4                             9                              45
D55V4, multiclass
        clus
vv       DEL PEAK 30(12Q24.33) MUTATED DEL PEAK 30(12Q24.33) WILD-TYPE
  CLUS_1                            16                              96
  CLUS_2                             9                              67
  CLUS_3                             3                              15
D55V5, multiclass
        clus
vv       DEL PEAK 30(12Q24.33) MUTATED DEL PEAK 30(12Q24.33) WILD-TYPE
  CLUS_1                            16                             102
  CLUS_2                            10                              81
  CLUS_3                            11                              79
D55V6, multiclass
        clus
vv       DEL PEAK 30(12Q24.33) MUTATED DEL PEAK 30(12Q24.33) WILD-TYPE
  CLUS_1                            11                              84
  CLUS_2                             9                              75
  CLUS_3                            17                             103
D55V7, multiclass
        clus
vv       DEL PEAK 30(12Q24.33) MUTATED DEL PEAK 30(12Q24.33) WILD-TYPE
  CLUS_1                            12                             101
  CLUS_2                            16                             121
  CLUS_3                            11                              90
D55V8, multiclass
        clus
vv       DEL PEAK 30(12Q24.33) MUTATED DEL PEAK 30(12Q24.33) WILD-TYPE
  CLUS_1                             1                               8
  CLUS_2                            11                             122
  CLUS_3                            27                             182

Clustering(56) Variable = Del Peak 31(13q12.11) mutation analysis
D56V1, multiclass
D56V2, multiclass
D56V3, multiclass
        clus
vv       DEL PEAK 31(13Q12.11) MUTATED DEL PEAK 31(13Q12.11) WILD-TYPE
  CLUS_1                            33                              39
  CLUS_2                            29                              22
  CLUS_3                            10                              19
  CLUS_4                            27                              27
D56V4, multiclass
        clus
vv       DEL PEAK 31(13Q12.11) MUTATED DEL PEAK 31(13Q12.11) WILD-TYPE
  CLUS_1                            55                              57
  CLUS_2                            33                              43
  CLUS_3                            11                               7
D56V5, multiclass
        clus
vv       DEL PEAK 31(13Q12.11) MUTATED DEL PEAK 31(13Q12.11) WILD-TYPE
  CLUS_1                            61                              57
  CLUS_2                            45                              46
  CLUS_3                            32                              58
D56V6, multiclass
        clus
vv       DEL PEAK 31(13Q12.11) MUTATED DEL PEAK 31(13Q12.11) WILD-TYPE
  CLUS_1                            45                              50
  CLUS_2                            29                              55
  CLUS_3                            64                              56
D56V7, multiclass
        clus
vv       DEL PEAK 31(13Q12.11) MUTATED DEL PEAK 31(13Q12.11) WILD-TYPE
  CLUS_1                            46                              67
  CLUS_2                            66                              71
  CLUS_3                            47                              54
D56V8, multiclass
        clus
vv       DEL PEAK 31(13Q12.11) MUTATED DEL PEAK 31(13Q12.11) WILD-TYPE
  CLUS_1                             4                               5
  CLUS_2                            63                              70
  CLUS_3                            92                             117

Clustering(57) Variable = Del Peak 32(13q14.2) mutation analysis
D57V1, multiclass
D57V2, multiclass
D57V3, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           28                             44
  CLUS_2                           28                             23
  CLUS_3                           10                             19
  CLUS_4                           19                             35
D57V4, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           52                             60
  CLUS_2                           27                             49
  CLUS_3                            6                             12
D57V5, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           66                             52
  CLUS_2                           39                             52
  CLUS_3                           23                             67
D57V6, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           38                             57
  CLUS_2                           22                             62
  CLUS_3                           68                             52
D57V7, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                           39                             74
  CLUS_2                           72                             65
  CLUS_3                           38                             63
D57V8, multiclass
        clus
vv       DEL PEAK 32(13Q14.2) MUTATED DEL PEAK 32(13Q14.2) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                           55                             78
  CLUS_3                           90                            119

Clustering(58) Variable = Del Peak 33(14q11.2) mutation analysis
D58V1, multiclass
D58V2, multiclass
D58V3, multiclass
        clus
vv       DEL PEAK 33(14Q11.2) MUTATED DEL PEAK 33(14Q11.2) WILD-TYPE
  CLUS_1                            9                             63
  CLUS_2                            9                             42
  CLUS_3                            5                             24
  CLUS_4                            4                             50
D58V4, multiclass
        clus
vv       DEL PEAK 33(14Q11.2) MUTATED DEL PEAK 33(14Q11.2) WILD-TYPE
  CLUS_1                           12                            100
  CLUS_2                           12                             64
  CLUS_3                            3                             15
D58V5, multiclass
        clus
vv       DEL PEAK 33(14Q11.2) MUTATED DEL PEAK 33(14Q11.2) WILD-TYPE
  CLUS_1                           20                             98
  CLUS_2                           10                             81
  CLUS_3                           14                             76
D58V6, multiclass
        clus
vv       DEL PEAK 33(14Q11.2) MUTATED DEL PEAK 33(14Q11.2) WILD-TYPE
  CLUS_1                           10                             85
  CLUS_2                           15                             69
  CLUS_3                           19                            101
D58V7, multiclass
        clus
vv       DEL PEAK 33(14Q11.2) MUTATED DEL PEAK 33(14Q11.2) WILD-TYPE
  CLUS_1                           17                             96
  CLUS_2                           25                            112
  CLUS_3                            8                             93
D58V8, multiclass
        clus
vv       DEL PEAK 33(14Q11.2) MUTATED DEL PEAK 33(14Q11.2) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                           14                            119
  CLUS_3                           34                            175

Clustering(59) Variable = Del Peak 34(14q32.32) mutation analysis
D59V1, multiclass
D59V2, multiclass
D59V3, multiclass
        clus
vv       DEL PEAK 34(14Q32.32) MUTATED DEL PEAK 34(14Q32.32) WILD-TYPE
  CLUS_1                             9                              63
  CLUS_2                            13                              38
  CLUS_3                             2                              27
  CLUS_4                             6                              48
D59V4, multiclass
        clus
vv       DEL PEAK 34(14Q32.32) MUTATED DEL PEAK 34(14Q32.32) WILD-TYPE
  CLUS_1                            19                              93
  CLUS_2                             8                              68
  CLUS_3                             3                              15
D59V5, multiclass
        clus
vv       DEL PEAK 34(14Q32.32) MUTATED DEL PEAK 34(14Q32.32) WILD-TYPE
  CLUS_1                            30                              88
  CLUS_2                            11                              80
  CLUS_3                             5                              85
D59V6, multiclass
        clus
vv       DEL PEAK 34(14Q32.32) MUTATED DEL PEAK 34(14Q32.32) WILD-TYPE
  CLUS_1                            11                              84
  CLUS_2                             4                              80
  CLUS_3                            31                              89
D59V7, multiclass
        clus
vv       DEL PEAK 34(14Q32.32) MUTATED DEL PEAK 34(14Q32.32) WILD-TYPE
  CLUS_1                            11                             102
  CLUS_2                            33                             104
  CLUS_3                             9                              92
D59V8, multiclass
        clus
vv       DEL PEAK 34(14Q32.32) MUTATED DEL PEAK 34(14Q32.32) WILD-TYPE
  CLUS_1                             0                               9
  CLUS_2                            14                             119
  CLUS_3                            39                             170

Clustering(60) Variable = Del Peak 35(15q15.1) mutation analysis
D60V1, multiclass
D60V2, multiclass
D60V3, multiclass
        clus
vv       DEL PEAK 35(15Q15.1) MUTATED DEL PEAK 35(15Q15.1) WILD-TYPE
  CLUS_1                           19                             53
  CLUS_2                           16                             35
  CLUS_3                            4                             25
  CLUS_4                           17                             37
D60V4, multiclass
        clus
vv       DEL PEAK 35(15Q15.1) MUTATED DEL PEAK 35(15Q15.1) WILD-TYPE
  CLUS_1                           31                             81
  CLUS_2                           17                             59
  CLUS_3                            8                             10
D60V5, multiclass
        clus
vv       DEL PEAK 35(15Q15.1) MUTATED DEL PEAK 35(15Q15.1) WILD-TYPE
  CLUS_1                           27                             91
  CLUS_2                           30                             61
  CLUS_3                           14                             76
D60V6, multiclass
        clus
vv       DEL PEAK 35(15Q15.1) MUTATED DEL PEAK 35(15Q15.1) WILD-TYPE
  CLUS_1                           29                             66
  CLUS_2                           13                             71
  CLUS_3                           29                             91
D60V7, multiclass
        clus
vv       DEL PEAK 35(15Q15.1) MUTATED DEL PEAK 35(15Q15.1) WILD-TYPE
  CLUS_1                           26                             87
  CLUS_2                           24                            113
  CLUS_3                           29                             72
D60V8, multiclass
        clus
vv       DEL PEAK 35(15Q15.1) MUTATED DEL PEAK 35(15Q15.1) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                           36                             97
  CLUS_3                           41                            168

Clustering(61) Variable = Del Peak 36(16q12.1) mutation analysis
D61V1, multiclass
D61V2, multiclass
D61V3, multiclass
        clus
vv       DEL PEAK 36(16Q12.1) MUTATED DEL PEAK 36(16Q12.1) WILD-TYPE
  CLUS_1                            8                             64
  CLUS_2                            9                             42
  CLUS_3                            3                             26
  CLUS_4                            7                             47
D61V4, multiclass
        clus
vv       DEL PEAK 36(16Q12.1) MUTATED DEL PEAK 36(16Q12.1) WILD-TYPE
  CLUS_1                           20                             92
  CLUS_2                            6                             70
  CLUS_3                            1                             17
D61V5, multiclass
        clus
vv       DEL PEAK 36(16Q12.1) MUTATED DEL PEAK 36(16Q12.1) WILD-TYPE
  CLUS_1                           38                             80
  CLUS_2                            9                             82
  CLUS_3                            4                             86
D61V6, multiclass
        clus
vv       DEL PEAK 36(16Q12.1) MUTATED DEL PEAK 36(16Q12.1) WILD-TYPE
  CLUS_1                            7                             88
  CLUS_2                            6                             78
  CLUS_3                           38                             82
D61V7, multiclass
        clus
vv       DEL PEAK 36(16Q12.1) MUTATED DEL PEAK 36(16Q12.1) WILD-TYPE
  CLUS_1                           15                             98
  CLUS_2                           38                             99
  CLUS_3                            9                             92
D61V8, multiclass
        clus
vv       DEL PEAK 36(16Q12.1) MUTATED DEL PEAK 36(16Q12.1) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                           14                            119
  CLUS_3                           47                            162

Clustering(62) Variable = Del Peak 37(16q23.3) mutation analysis
D62V1, multiclass
D62V2, multiclass
D62V3, multiclass
        clus
vv       DEL PEAK 37(16Q23.3) MUTATED DEL PEAK 37(16Q23.3) WILD-TYPE
  CLUS_1                           12                             60
  CLUS_2                           14                             37
  CLUS_3                            5                             24
  CLUS_4                           10                             44
D62V4, multiclass
        clus
vv       DEL PEAK 37(16Q23.3) MUTATED DEL PEAK 37(16Q23.3) WILD-TYPE
  CLUS_1                           30                             82
  CLUS_2                           10                             66
  CLUS_3                            1                             17
D62V5, multiclass
        clus
vv       DEL PEAK 37(16Q23.3) MUTATED DEL PEAK 37(16Q23.3) WILD-TYPE
  CLUS_1                           36                             82
  CLUS_2                           12                             79
  CLUS_3                           10                             80
D62V6, multiclass
        clus
vv       DEL PEAK 37(16Q23.3) MUTATED DEL PEAK 37(16Q23.3) WILD-TYPE
  CLUS_1                           11                             84
  CLUS_2                            9                             75
  CLUS_3                           38                             82
D62V7, multiclass
        clus
vv       DEL PEAK 37(16Q23.3) MUTATED DEL PEAK 37(16Q23.3) WILD-TYPE
  CLUS_1                           19                             94
  CLUS_2                           39                             98
  CLUS_3                           14                             87
D62V8, multiclass
        clus
vv       DEL PEAK 37(16Q23.3) MUTATED DEL PEAK 37(16Q23.3) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                           21                            112
  CLUS_3                           49                            160

Clustering(63) Variable = Del Peak 38(17q25.3) mutation analysis
D63V1, multiclass
D63V2, multiclass
D63V3, multiclass
        clus
vv       DEL PEAK 38(17Q25.3) MUTATED DEL PEAK 38(17Q25.3) WILD-TYPE
  CLUS_1                            8                             64
  CLUS_2                            7                             44
  CLUS_3                            1                             28
  CLUS_4                            4                             50
D63V4, multiclass
        clus
vv       DEL PEAK 38(17Q25.3) MUTATED DEL PEAK 38(17Q25.3) WILD-TYPE
  CLUS_1                           11                            101
  CLUS_2                            8                             68
  CLUS_3                            1                             17
D63V5, multiclass
        clus
vv       DEL PEAK 38(17Q25.3) MUTATED DEL PEAK 38(17Q25.3) WILD-TYPE
  CLUS_1                           23                             95
  CLUS_2                            8                             83
  CLUS_3                            8                             82
D63V6, multiclass
        clus
vv       DEL PEAK 38(17Q25.3) MUTATED DEL PEAK 38(17Q25.3) WILD-TYPE
  CLUS_1                            7                             88
  CLUS_2                           10                             74
  CLUS_3                           22                             98
D63V7, multiclass
        clus
vv       DEL PEAK 38(17Q25.3) MUTATED DEL PEAK 38(17Q25.3) WILD-TYPE
  CLUS_1                            9                            104
  CLUS_2                           24                            113
  CLUS_3                            8                             93
D63V8, multiclass
        clus
vv       DEL PEAK 38(17Q25.3) MUTATED DEL PEAK 38(17Q25.3) WILD-TYPE
  CLUS_1                            0                              9
  CLUS_2                           10                            123
  CLUS_3                           31                            178

Clustering(64) Variable = Del Peak 39(18q21.2) mutation analysis
D64V1, multiclass
D64V2, multiclass
D64V3, multiclass
        clus
vv       DEL PEAK 39(18Q21.2) MUTATED DEL PEAK 39(18Q21.2) WILD-TYPE
  CLUS_1                           41                             31
  CLUS_2                           30                             21
  CLUS_3                           13                             16
  CLUS_4                           32                             22
D64V4, multiclass
        clus
vv       DEL PEAK 39(18Q21.2) MUTATED DEL PEAK 39(18Q21.2) WILD-TYPE
  CLUS_1                           60                             52
  CLUS_2                           46                             30
  CLUS_3                           10                              8
D64V5, multiclass
        clus
vv       DEL PEAK 39(18Q21.2) MUTATED DEL PEAK 39(18Q21.2) WILD-TYPE
  CLUS_1                           49                             69
  CLUS_2                           59                             32
  CLUS_3                           51                             39
D64V6, multiclass
        clus
vv       DEL PEAK 39(18Q21.2) MUTATED DEL PEAK 39(18Q21.2) WILD-TYPE
  CLUS_1                           60                             35
  CLUS_2                           48                             36
  CLUS_3                           51                             69
D64V7, multiclass
        clus
vv       DEL PEAK 39(18Q21.2) MUTATED DEL PEAK 39(18Q21.2) WILD-TYPE
  CLUS_1                           64                             49
  CLUS_2                           55                             82
  CLUS_3                           62                             39
D64V8, multiclass
        clus
vv       DEL PEAK 39(18Q21.2) MUTATED DEL PEAK 39(18Q21.2) WILD-TYPE
  CLUS_1                            6                              3
  CLUS_2                           80                             53
  CLUS_3                           95                            114

Clustering(65) Variable = Del Peak 40(18q23) mutation analysis
D65V1, multiclass
D65V2, multiclass
D65V3, multiclass
        clus
vv       DEL PEAK 40(18Q23) MUTATED DEL PEAK 40(18Q23) WILD-TYPE
  CLUS_1                         48                           24
  CLUS_2                         30                           21
  CLUS_3                         13                           16
  CLUS_4                         36                           18
D65V4, multiclass
        clus
vv       DEL PEAK 40(18Q23) MUTATED DEL PEAK 40(18Q23) WILD-TYPE
  CLUS_1                         64                           48
  CLUS_2                         51                           25
  CLUS_3                         12                            6
D65V5, multiclass
        clus
vv       DEL PEAK 40(18Q23) MUTATED DEL PEAK 40(18Q23) WILD-TYPE
  CLUS_1                         53                           65
  CLUS_2                         62                           29
  CLUS_3                         55                           35
D65V6, multiclass
        clus
vv       DEL PEAK 40(18Q23) MUTATED DEL PEAK 40(18Q23) WILD-TYPE
  CLUS_1                         65                           30
  CLUS_2                         50                           34
  CLUS_3                         55                           65
D65V7, multiclass
        clus
vv       DEL PEAK 40(18Q23) MUTATED DEL PEAK 40(18Q23) WILD-TYPE
  CLUS_1                         70                           43
  CLUS_2                         63                           74
  CLUS_3                         64                           37
D65V8, multiclass
        clus
vv       DEL PEAK 40(18Q23) MUTATED DEL PEAK 40(18Q23) WILD-TYPE
  CLUS_1                          5                            4
  CLUS_2                         86                           47
  CLUS_3                        106                          103

Clustering(66) Variable = Del Peak 41(19p13.3) mutation analysis
D66V1, multiclass
D66V2, multiclass
D66V3, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                           32                             40
  CLUS_2                           15                             36
  CLUS_3                            9                             20
  CLUS_4                           22                             32
D66V4, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                           35                             77
  CLUS_2                           34                             42
  CLUS_3                            9                              9
D66V5, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                           38                             80
  CLUS_2                           39                             52
  CLUS_3                           25                             65
D66V6, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                           34                             61
  CLUS_2                           30                             54
  CLUS_3                           38                             82
D66V7, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                           33                             80
  CLUS_2                           45                             92
  CLUS_3                           38                             63
D66V8, multiclass
        clus
vv       DEL PEAK 41(19P13.3) MUTATED DEL PEAK 41(19P13.3) WILD-TYPE
  CLUS_1                            4                              5
  CLUS_2                           49                             84
  CLUS_3                           63                            146

Clustering(67) Variable = Del Peak 42(19q13.43) mutation analysis
D67V1, multiclass
D67V2, multiclass
D67V3, multiclass
        clus
vv       DEL PEAK 42(19Q13.43) MUTATED DEL PEAK 42(19Q13.43) WILD-TYPE
  CLUS_1                            20                              52
  CLUS_2                            11                              40
  CLUS_3                             6                              23
  CLUS_4                             7                              47
D67V4, multiclass
        clus
vv       DEL PEAK 42(19Q13.43) MUTATED DEL PEAK 42(19Q13.43) WILD-TYPE
  CLUS_1                            19                              93
  CLUS_2                            18                              58
  CLUS_3                             7                              11
D67V5, multiclass
        clus
vv       DEL PEAK 42(19Q13.43) MUTATED DEL PEAK 42(19Q13.43) WILD-TYPE
  CLUS_1                            26                              92
  CLUS_2                            15                              76
  CLUS_3                            16                              74
D67V6, multiclass
        clus
vv       DEL PEAK 42(19Q13.43) MUTATED DEL PEAK 42(19Q13.43) WILD-TYPE
  CLUS_1                            13                              82
  CLUS_2                            18                              66
  CLUS_3                            26                              94
D67V7, multiclass
        clus
vv       DEL PEAK 42(19Q13.43) MUTATED DEL PEAK 42(19Q13.43) WILD-TYPE
  CLUS_1                            18                              95
  CLUS_2                            34                             103
  CLUS_3                            15                              86
D67V8, multiclass
        clus
vv       DEL PEAK 42(19Q13.43) MUTATED DEL PEAK 42(19Q13.43) WILD-TYPE
  CLUS_1                             1                               8
  CLUS_2                            23                             110
  CLUS_3                            43                             166

Clustering(68) Variable = Del Peak 43(Xp21.3) mutation analysis
D68V1, multiclass
D68V2, multiclass
D68V3, multiclass
        clus
vv       DEL PEAK 43(XP21.3) MUTATED DEL PEAK 43(XP21.3) WILD-TYPE
  CLUS_1                          21                            51
  CLUS_2                          20                            31
  CLUS_3                          10                            19
  CLUS_4                          23                            31
D68V4, multiclass
        clus
vv       DEL PEAK 43(XP21.3) MUTATED DEL PEAK 43(XP21.3) WILD-TYPE
  CLUS_1                          43                            69
  CLUS_2                          21                            55
  CLUS_3                          10                             8
D68V5, multiclass
        clus
vv       DEL PEAK 43(XP21.3) MUTATED DEL PEAK 43(XP21.3) WILD-TYPE
  CLUS_1                          42                            76
  CLUS_2                          31                            60
  CLUS_3                          23                            67
D68V6, multiclass
        clus
vv       DEL PEAK 43(XP21.3) MUTATED DEL PEAK 43(XP21.3) WILD-TYPE
  CLUS_1                          34                            61
  CLUS_2                          18                            66
  CLUS_3                          44                            76
D68V7, multiclass
        clus
vv       DEL PEAK 43(XP21.3) MUTATED DEL PEAK 43(XP21.3) WILD-TYPE
  CLUS_1                          30                            83
  CLUS_2                          49                            88
  CLUS_3                          37                            64
D68V8, multiclass
        clus
vv       DEL PEAK 43(XP21.3) MUTATED DEL PEAK 43(XP21.3) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                          47                            86
  CLUS_3                          68                           141

Clustering(69) Variable = Del Peak 44(Xp11.3) mutation analysis
D69V1, multiclass
D69V2, multiclass
D69V3, multiclass
        clus
vv       DEL PEAK 44(XP11.3) MUTATED DEL PEAK 44(XP11.3) WILD-TYPE
  CLUS_1                          20                            52
  CLUS_2                          21                            30
  CLUS_3                          11                            18
  CLUS_4                          22                            32
D69V4, multiclass
        clus
vv       DEL PEAK 44(XP11.3) MUTATED DEL PEAK 44(XP11.3) WILD-TYPE
  CLUS_1                          44                            68
  CLUS_2                          19                            57
  CLUS_3                          11                             7
D69V5, multiclass
        clus
vv       DEL PEAK 44(XP11.3) MUTATED DEL PEAK 44(XP11.3) WILD-TYPE
  CLUS_1                          43                            75
  CLUS_2                          32                            59
  CLUS_3                          23                            67
D69V6, multiclass
        clus
vv       DEL PEAK 44(XP11.3) MUTATED DEL PEAK 44(XP11.3) WILD-TYPE
  CLUS_1                          34                            61
  CLUS_2                          19                            65
  CLUS_3                          45                            75
D69V7, multiclass
        clus
vv       DEL PEAK 44(XP11.3) MUTATED DEL PEAK 44(XP11.3) WILD-TYPE
  CLUS_1                          28                            85
  CLUS_2                          48                            89
  CLUS_3                          38                            63
D69V8, multiclass
        clus
vv       DEL PEAK 44(XP11.3) MUTATED DEL PEAK 44(XP11.3) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                          44                            89
  CLUS_3                          67                           142

Clustering(70) Variable = Del Peak 45(Xq21.33) mutation analysis
D70V1, multiclass
D70V2, multiclass
D70V3, multiclass
        clus
vv       DEL PEAK 45(XQ21.33) MUTATED DEL PEAK 45(XQ21.33) WILD-TYPE
  CLUS_1                            8                             64
  CLUS_2                           10                             41
  CLUS_3                            1                             28
  CLUS_4                           14                             40
D70V4, multiclass
        clus
vv       DEL PEAK 45(XQ21.33) MUTATED DEL PEAK 45(XQ21.33) WILD-TYPE
  CLUS_1                           21                             91
  CLUS_2                            9                             67
  CLUS_3                            3                             15
D70V5, multiclass
        clus
vv       DEL PEAK 45(XQ21.33) MUTATED DEL PEAK 45(XQ21.33) WILD-TYPE
  CLUS_1                           32                             86
  CLUS_2                            9                             82
  CLUS_3                           10                             80
D70V6, multiclass
        clus
vv       DEL PEAK 45(XQ21.33) MUTATED DEL PEAK 45(XQ21.33) WILD-TYPE
  CLUS_1                           10                             85
  CLUS_2                           11                             73
  CLUS_3                           30                             90
D70V7, multiclass
        clus
vv       DEL PEAK 45(XQ21.33) MUTATED DEL PEAK 45(XQ21.33) WILD-TYPE
  CLUS_1                           11                            102
  CLUS_2                           37                            100
  CLUS_3                            8                             93
D70V8, multiclass
        clus
vv       DEL PEAK 45(XQ21.33) MUTATED DEL PEAK 45(XQ21.33) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                           11                            122
  CLUS_3                           44                            165
                     V1                      V2                      V3 
              "CN_CNMF"      "METHLYATION_CNMF"             "RPPA_CNMF" 
                     V4                      V5                      V6 
   "RPPA_CHIERARCHICAL"          "MRNASEQ_CNMF" "MRNASEQ_CHIERARCHICAL" 
                     V7                      V8 
          "MIRSEQ_CNMF"  "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
