
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/375884/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/LIHC-TP/2907443/1.GDAC_mergedClustering.Finished/LIHC-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LIHC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LIHC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=99, in cluster file=97, common to both=97
[1] 53 97
[1] "Amp Peak  1(1p22.3) mutation analysis"
[1] 3
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                           24                            73 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                           24                            73 
[1] "Amp Peak  2(1q22) mutation analysis"
[1] 3
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                         72                          25 
  AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE 
                         72                          25 
[1] "Amp Peak  3(1q42.3) mutation analysis"
[1] 3
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           65                            32 
  AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE 
                           65                            32 
[1] "Amp Peak  4(2p24.1) mutation analysis"
[1] 3
  AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE 
                           22                            75 
  AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE 
                           22                            75 
[1] "Amp Peak  5(2q33.1) mutation analysis"
[1] 3
  AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE 
                           20                            77 
  AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE 
                           20                            77 
[1] "Amp Peak  6(3q26.31) mutation analysis"
[1] 3
  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                            20                             77 
  AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE 
                            20                             77 
[1] "Amp Peak  7(4q31.3) mutation analysis"
[1] 3
  AMP PEAK  7(4Q31.3) MUTATED AMP PEAK  7(4Q31.3) WILD-TYPE 
                            8                            89 
  AMP PEAK  7(4Q31.3) MUTATED AMP PEAK  7(4Q31.3) WILD-TYPE 
                            8                            89 
[1] "Amp Peak  8(5p15.33) mutation analysis"
[1] 3
  AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE 
                            48                             49 
  AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE 
                            48                             49 
[1] "Amp Peak  9(5q35.3) mutation analysis"
[1] 3
  AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE 
                           37                            60 
  AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE 
                           37                            60 
[1] "Amp Peak 10(6p25.2) mutation analysis"
[1] 3
  AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE 
                           42                            55 
  AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE 
                           42                            55 
[1] "Amp Peak 11(6p21.1) mutation analysis"
[1] 3
  AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE 
                           43                            54 
  AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE 
                           43                            54 
[1] "Amp Peak 12(6q12) mutation analysis"
[1] 3
  AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE 
                         32                          65 
  AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE 
                         32                          65 
[1] "Amp Peak 13(7q21.2) mutation analysis"
[1] 3
  AMP PEAK 13(7Q21.2) MUTATED AMP PEAK 13(7Q21.2) WILD-TYPE 
                           36                            61 
  AMP PEAK 13(7Q21.2) MUTATED AMP PEAK 13(7Q21.2) WILD-TYPE 
                           36                            61 
[1] "Amp Peak 14(8q13.1) mutation analysis"
[1] 3
  AMP PEAK 14(8Q13.1) MUTATED AMP PEAK 14(8Q13.1) WILD-TYPE 
                           49                            48 
  AMP PEAK 14(8Q13.1) MUTATED AMP PEAK 14(8Q13.1) WILD-TYPE 
                           49                            48 
[1] "Amp Peak 15(8q24.13) mutation analysis"
[1] 3
  AMP PEAK 15(8Q24.13) MUTATED AMP PEAK 15(8Q24.13) WILD-TYPE 
                            60                             37 
  AMP PEAK 15(8Q24.13) MUTATED AMP PEAK 15(8Q24.13) WILD-TYPE 
                            60                             37 
[1] "Amp Peak 16(10p15.1) mutation analysis"
[1] 3
  AMP PEAK 16(10P15.1) MUTATED AMP PEAK 16(10P15.1) WILD-TYPE 
                            19                             78 
  AMP PEAK 16(10P15.1) MUTATED AMP PEAK 16(10P15.1) WILD-TYPE 
                            19                             78 
[1] "Amp Peak 17(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE 
                            17                             80 
  AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE 
                            17                             80 
[1] "Amp Peak 18(12q23.1) mutation analysis"
[1] 3
  AMP PEAK 18(12Q23.1) MUTATED AMP PEAK 18(12Q23.1) WILD-TYPE 
                            19                             78 
  AMP PEAK 18(12Q23.1) MUTATED AMP PEAK 18(12Q23.1) WILD-TYPE 
                            19                             78 
[1] "Amp Peak 19(13q32.3) mutation analysis"
[1] 3
  AMP PEAK 19(13Q32.3) MUTATED AMP PEAK 19(13Q32.3) WILD-TYPE 
                            22                             75 
  AMP PEAK 19(13Q32.3) MUTATED AMP PEAK 19(13Q32.3) WILD-TYPE 
                            22                             75 
[1] "Amp Peak 20(15q21.3) mutation analysis"
[1] 3
  AMP PEAK 20(15Q21.3) MUTATED AMP PEAK 20(15Q21.3) WILD-TYPE 
                            15                             82 
  AMP PEAK 20(15Q21.3) MUTATED AMP PEAK 20(15Q21.3) WILD-TYPE 
                            15                             82 
[1] "Amp Peak 21(15q26.3) mutation analysis"
[1] 3
  AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE 
                            15                             82 
  AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE 
                            15                             82 
[1] "Amp Peak 22(17p11.2) mutation analysis"
[1] 3
  AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE 
                            15                             82 
  AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE 
                            15                             82 
[1] "Amp Peak 23(17q23.1) mutation analysis"
[1] 3
  AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE 
                            40                             57 
  AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE 
                            40                             57 
[1] "Amp Peak 24(17q25.3) mutation analysis"
[1] 3
  AMP PEAK 24(17Q25.3) MUTATED AMP PEAK 24(17Q25.3) WILD-TYPE 
                            44                             53 
  AMP PEAK 24(17Q25.3) MUTATED AMP PEAK 24(17Q25.3) WILD-TYPE 
                            44                             53 
[1] "Amp Peak 25(19q13.11) mutation analysis"
[1] 3
  AMP PEAK 25(19Q13.11) MUTATED AMP PEAK 25(19Q13.11) WILD-TYPE 
                             31                              66 
  AMP PEAK 25(19Q13.11) MUTATED AMP PEAK 25(19Q13.11) WILD-TYPE 
                             31                              66 
[1] "Amp Peak 26(20q13.13) mutation analysis"
[1] 3
  AMP PEAK 26(20Q13.13) MUTATED AMP PEAK 26(20Q13.13) WILD-TYPE 
                             35                              62 
  AMP PEAK 26(20Q13.13) MUTATED AMP PEAK 26(20Q13.13) WILD-TYPE 
                             35                              62 
[1] "Del Peak  1(1p36.32) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            45                             52 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            45                             52 
[1] "Del Peak  2(2q22.1) mutation analysis"
[1] 3
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                           10                            87 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                           10                            87 
[1] "Del Peak  3(2q37.3) mutation analysis"
[1] 3
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           16                            81 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                           16                            81 
[1] "Del Peak  4(3p13) mutation analysis"
[1] 3
  DEL PEAK  4(3P13) MUTATED DEL PEAK  4(3P13) WILD-TYPE 
                         16                          81 
  DEL PEAK  4(3P13) MUTATED DEL PEAK  4(3P13) WILD-TYPE 
                         16                          81 
[1] "Del Peak  5(4q24) mutation analysis"
[1] 3
  DEL PEAK  5(4Q24) MUTATED DEL PEAK  5(4Q24) WILD-TYPE 
                         41                          56 
  DEL PEAK  5(4Q24) MUTATED DEL PEAK  5(4Q24) WILD-TYPE 
                         41                          56 
[1] "Del Peak  6(4q35.1) mutation analysis"
[1] 3
  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                           42                            55 
  DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE 
                           42                            55 
[1] "Del Peak  7(5q23.1) mutation analysis"
[1] 3
  DEL PEAK  7(5Q23.1) MUTATED DEL PEAK  7(5Q23.1) WILD-TYPE 
                           14                            83 
  DEL PEAK  7(5Q23.1) MUTATED DEL PEAK  7(5Q23.1) WILD-TYPE 
                           14                            83 
[1] "Del Peak  8(6q16.3) mutation analysis"
[1] 3
  DEL PEAK  8(6Q16.3) MUTATED DEL PEAK  8(6Q16.3) WILD-TYPE 
                           36                            61 
  DEL PEAK  8(6Q16.3) MUTATED DEL PEAK  8(6Q16.3) WILD-TYPE 
                           36                            61 
[1] "Del Peak  9(6q26) mutation analysis"
[1] 3
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                         39                          58 
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                         39                          58 
[1] "Del Peak 10(8p23.2) mutation analysis"
[1] 3
  DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE 
                           60                            37 
  DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE 
                           60                            37 
[1] "Del Peak 11(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           39                            58 
  DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE 
                           39                            58 
[1] "Del Peak 12(10p15.3) mutation analysis"
[1] 3
  DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE 
                             8                             89 
  DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE 
                             8                             89 
[1] "Del Peak 13(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                             31                              66 
  DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE 
                             31                              66 
[1] "Del Peak 14(10q24.33) mutation analysis"
[1] 3
  DEL PEAK 14(10Q24.33) MUTATED DEL PEAK 14(10Q24.33) WILD-TYPE 
                             29                              68 
  DEL PEAK 14(10Q24.33) MUTATED DEL PEAK 14(10Q24.33) WILD-TYPE 
                             29                              68 
[1] "Del Peak 15(11q14.1) mutation analysis"
[1] 3
  DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE 
                            18                             79 
  DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE 
                            18                             79 
[1] "Del Peak 16(12p12.1) mutation analysis"
[1] 3
  DEL PEAK 16(12P12.1) MUTATED DEL PEAK 16(12P12.1) WILD-TYPE 
                            23                             74 
  DEL PEAK 16(12P12.1) MUTATED DEL PEAK 16(12P12.1) WILD-TYPE 
                            23                             74 
[1] "Del Peak 17(12q24.33) mutation analysis"
[1] 3
  DEL PEAK 17(12Q24.33) MUTATED DEL PEAK 17(12Q24.33) WILD-TYPE 
                             16                              81 
  DEL PEAK 17(12Q24.33) MUTATED DEL PEAK 17(12Q24.33) WILD-TYPE 
                             16                              81 
[1] "Del Peak 18(13q14.2) mutation analysis"
[1] 3
  DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE 
                            43                             54 
  DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE 
                            43                             54 
[1] "Del Peak 19(14q23.3) mutation analysis"
[1] 3
  DEL PEAK 19(14Q23.3) MUTATED DEL PEAK 19(14Q23.3) WILD-TYPE 
                            36                             61 
  DEL PEAK 19(14Q23.3) MUTATED DEL PEAK 19(14Q23.3) WILD-TYPE 
                            36                             61 
[1] "Del Peak 20(15q15.1) mutation analysis"
[1] 3
  DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE 
                            18                             79 
  DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE 
                            18                             79 
[1] "Del Peak 21(16q23.1) mutation analysis"
[1] 3
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                            42                             55 
  DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE 
                            42                             55 
[1] "Del Peak 22(17p12) mutation analysis"
[1] 3
  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE 
                          57                           40 
  DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE 
                          57                           40 
[1] "Del Peak 23(18q21.2) mutation analysis"
[1] 3
  DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE 
                            18                             79 
  DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE 
                            18                             79 
[1] "Del Peak 24(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE 
                            20                             77 
  DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE 
                            20                             77 
[1] "Del Peak 25(22q12.1) mutation analysis"
[1] 3
  DEL PEAK 25(22Q12.1) MUTATED DEL PEAK 25(22Q12.1) WILD-TYPE 
                            18                             79 
  DEL PEAK 25(22Q12.1) MUTATED DEL PEAK 25(22Q12.1) WILD-TYPE 
                            18                             79 
[1] "Del Peak 26(22q13.32) mutation analysis"
[1] 3
  DEL PEAK 26(22Q13.32) MUTATED DEL PEAK 26(22Q13.32) WILD-TYPE 
                             24                              73 
  DEL PEAK 26(22Q13.32) MUTATED DEL PEAK 26(22Q13.32) WILD-TYPE 
                             24                              73 
[1] "Del Peak 27(Xq27.3) mutation analysis"
[1] 3
  DEL PEAK 27(XQ27.3) MUTATED DEL PEAK 27(XQ27.3) WILD-TYPE 
                           14                            83 
  DEL PEAK 27(XQ27.3) MUTATED DEL PEAK 27(XQ27.3) WILD-TYPE 
                           14                            83 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "MRNASEQ_CNMF"         
[4] "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 

Input Data has 6 rows and 97 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "MRNASEQ_CNMF"         
[4] "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 97 columns, 0 survival variables, and 6 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=9, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=2, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p22.3) mutation analysis
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                           5                            23
  CLUS_2                           6                            30
  CLUS_3                          13                            20
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                           3                            20
  CLUS_2                           8                            20
  CLUS_3                          13                            32
D1V3, multiclass
D1V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P22.3) MUTATED     11    8
  AMP PEAK  1(1P22.3) WILD-TYPE   18   32
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          11                            18
  CLUS_2                           8                            32
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                           8                            25
  CLUS_2                           2                            15
  CLUS_3                          14                            30
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                           1                            12
  CLUS_2                           1                            11
  CLUS_3                           9                            25
  CLUS_4                          13                            22

Clustering(2) Variable = Amp Peak  2(1q22) mutation analysis
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        25                           3
  CLUS_2                        19                          17
  CLUS_3                        28                           5
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        10                          13
  CLUS_2                        23                           5
  CLUS_3                        39                           6
D2V3, multiclass
D2V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK  2(1Q22) MUTATED     23   29
  AMP PEAK  2(1Q22) WILD-TYPE    6   11
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        23                           6
  CLUS_2                        29                          11
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        22                          11
  CLUS_2                        13                           4
  CLUS_3                        35                           9
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q22) MUTATED AMP PEAK  2(1Q22) WILD-TYPE
  CLUS_1                        10                           3
  CLUS_2                         9                           3
  CLUS_3                        23                          11
  CLUS_4                        28                           7

Clustering(3) Variable = Amp Peak  3(1q42.3) mutation analysis
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          24                             4
  CLUS_2                          17                            19
  CLUS_3                          24                             9
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          10                            13
  CLUS_2                          19                             9
  CLUS_3                          36                             9
D3V3, multiclass
D3V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(1Q42.3) MUTATED     19   24
  AMP PEAK  3(1Q42.3) WILD-TYPE   10   16
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          19                            10
  CLUS_2                          24                            16
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          20                            13
  CLUS_2                          11                             6
  CLUS_3                          32                            12
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q42.3) MUTATED AMP PEAK  3(1Q42.3) WILD-TYPE
  CLUS_1                          10                             3
  CLUS_2                           6                             6
  CLUS_3                          20                            14
  CLUS_4                          27                             8

Clustering(4) Variable = Amp Peak  4(2p24.1) mutation analysis
D4V1, multiclass
        clus
vv       AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  CLUS_1                           5                            23
  CLUS_2                           6                            30
  CLUS_3                          11                            22
D4V2, multiclass
        clus
vv       AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  CLUS_1                           7                            16
  CLUS_2                           4                            24
  CLUS_3                          10                            35
D4V3, multiclass
D4V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  4(2P24.1) MUTATED      9    7
  AMP PEAK  4(2P24.1) WILD-TYPE   20   33
        clus
vv       AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  CLUS_1                           9                            20
  CLUS_2                           7                            33
D4V5, multiclass
        clus
vv       AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  CLUS_1                          10                            23
  CLUS_2                           5                            12
  CLUS_3                           6                            38
D4V6, multiclass
        clus
vv       AMP PEAK  4(2P24.1) MUTATED AMP PEAK  4(2P24.1) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           4                             8
  CLUS_3                           5                            29
  CLUS_4                          12                            23

Clustering(5) Variable = Amp Peak  5(2q33.1) mutation analysis
D5V1, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                           4                            24
  CLUS_2                           6                            30
  CLUS_3                          10                            23
D5V2, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                           6                            17
  CLUS_2                           4                            24
  CLUS_3                           9                            36
D5V3, multiclass
D5V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(2Q33.1) MUTATED      7    8
  AMP PEAK  5(2Q33.1) WILD-TYPE   22   32
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                           7                            22
  CLUS_2                           8                            32
D5V5, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                           8                            25
  CLUS_2                           3                            14
  CLUS_3                           8                            36
D5V6, multiclass
        clus
vv       AMP PEAK  5(2Q33.1) MUTATED AMP PEAK  5(2Q33.1) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           3                             9
  CLUS_3                           6                            28
  CLUS_4                          10                            25

Clustering(6) Variable = Amp Peak  6(3q26.31) mutation analysis
D6V1, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            4                             24
  CLUS_2                            3                             33
  CLUS_3                           13                             20
D6V2, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            3                             20
  CLUS_2                            4                             24
  CLUS_3                           12                             33
D6V3, multiclass
D6V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  6(3Q26.31) MUTATED      7   10
  AMP PEAK  6(3Q26.31) WILD-TYPE   22   30
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            7                             22
  CLUS_2                           10                             30
D6V5, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            6                             27
  CLUS_2                            5                             12
  CLUS_3                            8                             36
D6V6, multiclass
        clus
vv       AMP PEAK  6(3Q26.31) MUTATED AMP PEAK  6(3Q26.31) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            4                              8
  CLUS_3                            6                             28
  CLUS_4                            9                             26

Clustering(7) Variable = Amp Peak  7(4q31.3) mutation analysis
D7V1, multiclass
        clus
vv       AMP PEAK  7(4Q31.3) MUTATED AMP PEAK  7(4Q31.3) WILD-TYPE
  CLUS_1                           1                            27
  CLUS_2                           3                            33
  CLUS_3                           4                            29
D7V2, multiclass
        clus
vv       AMP PEAK  7(4Q31.3) MUTATED AMP PEAK  7(4Q31.3) WILD-TYPE
  CLUS_1                           2                            21
  CLUS_2                           2                            26
  CLUS_3                           4                            41
D7V3, multiclass
D7V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(4Q31.3) MUTATED      5    2
  AMP PEAK  7(4Q31.3) WILD-TYPE   24   38
        clus
vv       AMP PEAK  7(4Q31.3) MUTATED AMP PEAK  7(4Q31.3) WILD-TYPE
  CLUS_1                           5                            24
  CLUS_2                           2                            38
D7V5, multiclass
        clus
vv       AMP PEAK  7(4Q31.3) MUTATED AMP PEAK  7(4Q31.3) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                           3                            14
  CLUS_3                           2                            42
D7V6, multiclass
        clus
vv       AMP PEAK  7(4Q31.3) MUTATED AMP PEAK  7(4Q31.3) WILD-TYPE
  CLUS_1                           0                            13
  CLUS_2                           2                            10
  CLUS_3                           2                            32
  CLUS_4                           4                            31

Clustering(8) Variable = Amp Peak  8(5p15.33) mutation analysis
D8V1, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           19                              9
  CLUS_2                           10                             26
  CLUS_3                           19                             14
D8V2, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                            9                             14
  CLUS_2                           15                             13
  CLUS_3                           24                             21
D8V3, multiclass
D8V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(5P15.33) MUTATED     17   15
  AMP PEAK  8(5P15.33) WILD-TYPE   12   25
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           17                             12
  CLUS_2                           15                             25
D8V5, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                           14                             19
  CLUS_2                           11                              6
  CLUS_3                           22                             22
D8V6, multiclass
        clus
vv       AMP PEAK  8(5P15.33) MUTATED AMP PEAK  8(5P15.33) WILD-TYPE
  CLUS_1                            7                              6
  CLUS_2                            7                              5
  CLUS_3                           14                             20
  CLUS_4                           19                             16

Clustering(9) Variable = Amp Peak  9(5q35.3) mutation analysis
D9V1, multiclass
        clus
vv       AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE
  CLUS_1                          15                            13
  CLUS_2                           8                            28
  CLUS_3                          14                            19
D9V2, multiclass
        clus
vv       AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE
  CLUS_1                           6                            17
  CLUS_2                          12                            16
  CLUS_3                          19                            26
D9V3, multiclass
D9V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  9(5Q35.3) MUTATED     12   12
  AMP PEAK  9(5Q35.3) WILD-TYPE   17   28
        clus
vv       AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE
  CLUS_1                          12                            17
  CLUS_2                          12                            28
D9V5, multiclass
        clus
vv       AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE
  CLUS_1                          12                            21
  CLUS_2                           7                            10
  CLUS_3                          16                            28
D9V6, multiclass
        clus
vv       AMP PEAK  9(5Q35.3) MUTATED AMP PEAK  9(5Q35.3) WILD-TYPE
  CLUS_1                           6                             7
  CLUS_2                           4                             8
  CLUS_3                          13                            21
  CLUS_4                          12                            23

Clustering(10) Variable = Amp Peak 10(6p25.2) mutation analysis
D10V1, multiclass
        clus
vv       AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                          13                            15
  CLUS_2                           9                            27
  CLUS_3                          20                            13
D10V2, multiclass
        clus
vv       AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                           3                            20
  CLUS_2                          15                            13
  CLUS_3                          23                            22
D10V3, multiclass
D10V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 10(6P25.2) MUTATED     17   15
  AMP PEAK 10(6P25.2) WILD-TYPE   12   25
        clus
vv       AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                          17                            12
  CLUS_2                          15                            25
D10V5, multiclass
        clus
vv       AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                          13                            20
  CLUS_2                           7                            10
  CLUS_3                          20                            24
D10V6, multiclass
        clus
vv       AMP PEAK 10(6P25.2) MUTATED AMP PEAK 10(6P25.2) WILD-TYPE
  CLUS_1                           4                             9
  CLUS_2                           4                             8
  CLUS_3                          14                            20
  CLUS_4                          18                            17

Clustering(11) Variable = Amp Peak 11(6p21.1) mutation analysis
D11V1, multiclass
        clus
vv       AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE
  CLUS_1                          13                            15
  CLUS_2                           8                            28
  CLUS_3                          22                            11
D11V2, multiclass
        clus
vv       AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE
  CLUS_1                           2                            21
  CLUS_2                          12                            16
  CLUS_3                          28                            17
D11V3, multiclass
D11V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 11(6P21.1) MUTATED     12   22
  AMP PEAK 11(6P21.1) WILD-TYPE   17   18
        clus
vv       AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE
  CLUS_1                          12                            17
  CLUS_2                          22                            18
D11V5, multiclass
        clus
vv       AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE
  CLUS_1                          12                            21
  CLUS_2                           8                             9
  CLUS_3                          22                            22
D11V6, multiclass
        clus
vv       AMP PEAK 11(6P21.1) MUTATED AMP PEAK 11(6P21.1) WILD-TYPE
  CLUS_1                           5                             8
  CLUS_2                           5                             7
  CLUS_3                          12                            22
  CLUS_4                          20                            15

Clustering(12) Variable = Amp Peak 12(6q12) mutation analysis
D12V1, multiclass
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                        10                          18
  CLUS_2                         7                          29
  CLUS_3                        15                          18
D12V2, multiclass
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                         3                          20
  CLUS_2                         8                          20
  CLUS_3                        20                          25
D12V3, multiclass
D12V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  AMP PEAK 12(6Q12) MUTATED     10   13
  AMP PEAK 12(6Q12) WILD-TYPE   19   27
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                        10                          19
  CLUS_2                        13                          27
D12V5, multiclass
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                         7                          26
  CLUS_2                         5                          12
  CLUS_3                        20                          24
D12V6, multiclass
        clus
vv       AMP PEAK 12(6Q12) MUTATED AMP PEAK 12(6Q12) WILD-TYPE
  CLUS_1                         5                           8
  CLUS_2                         2                          10
  CLUS_3                        10                          24
  CLUS_4                        15                          20

Clustering(13) Variable = Amp Peak 13(7q21.2) mutation analysis
D13V1, multiclass
        clus
vv       AMP PEAK 13(7Q21.2) MUTATED AMP PEAK 13(7Q21.2) WILD-TYPE
  CLUS_1                          14                            14
  CLUS_2                          11                            25
  CLUS_3                          11                            22
D13V2, multiclass
        clus
vv       AMP PEAK 13(7Q21.2) MUTATED AMP PEAK 13(7Q21.2) WILD-TYPE
  CLUS_1                          10                            13
  CLUS_2                           5                            23
  CLUS_3                          20                            25
D13V3, multiclass
D13V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 13(7Q21.2) MUTATED     13   11
  AMP PEAK 13(7Q21.2) WILD-TYPE   16   29
        clus
vv       AMP PEAK 13(7Q21.2) MUTATED AMP PEAK 13(7Q21.2) WILD-TYPE
  CLUS_1                          13                            16
  CLUS_2                          11                            29
D13V5, multiclass
        clus
vv       AMP PEAK 13(7Q21.2) MUTATED AMP PEAK 13(7Q21.2) WILD-TYPE
  CLUS_1                          12                            21
  CLUS_2                           4                            13
  CLUS_3                          18                            26
D13V6, multiclass
        clus
vv       AMP PEAK 13(7Q21.2) MUTATED AMP PEAK 13(7Q21.2) WILD-TYPE
  CLUS_1                           5                             8
  CLUS_2                           3                             9
  CLUS_3                           9                            25
  CLUS_4                          17                            18

Clustering(14) Variable = Amp Peak 14(8q13.1) mutation analysis
D14V1, multiclass
        clus
vv       AMP PEAK 14(8Q13.1) MUTATED AMP PEAK 14(8Q13.1) WILD-TYPE
  CLUS_1                          27                             1
  CLUS_2                          10                            26
  CLUS_3                          12                            21
D14V2, multiclass
        clus
vv       AMP PEAK 14(8Q13.1) MUTATED AMP PEAK 14(8Q13.1) WILD-TYPE
  CLUS_1                          12                            11
  CLUS_2                          13                            15
  CLUS_3                          23                            22
D14V3, multiclass
D14V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 14(8Q13.1) MUTATED     15   20
  AMP PEAK 14(8Q13.1) WILD-TYPE   14   20
        clus
vv       AMP PEAK 14(8Q13.1) MUTATED AMP PEAK 14(8Q13.1) WILD-TYPE
  CLUS_1                          15                            14
  CLUS_2                          20                            20
D14V5, multiclass
        clus
vv       AMP PEAK 14(8Q13.1) MUTATED AMP PEAK 14(8Q13.1) WILD-TYPE
  CLUS_1                          16                            17
  CLUS_2                           7                            10
  CLUS_3                          24                            20
D14V6, multiclass
        clus
vv       AMP PEAK 14(8Q13.1) MUTATED AMP PEAK 14(8Q13.1) WILD-TYPE
  CLUS_1                           9                             4
  CLUS_2                           5                             7
  CLUS_3                          15                            19
  CLUS_4                          18                            17

Clustering(15) Variable = Amp Peak 15(8q24.13) mutation analysis
D15V1, multiclass
        clus
vv       AMP PEAK 15(8Q24.13) MUTATED AMP PEAK 15(8Q24.13) WILD-TYPE
  CLUS_1                           28                              0
  CLUS_2                           15                             21
  CLUS_3                           17                             16
D15V2, multiclass
        clus
vv       AMP PEAK 15(8Q24.13) MUTATED AMP PEAK 15(8Q24.13) WILD-TYPE
  CLUS_1                           14                              9
  CLUS_2                           19                              9
  CLUS_3                           26                             19
D15V3, multiclass
D15V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 15(8Q24.13) MUTATED     16   25
  AMP PEAK 15(8Q24.13) WILD-TYPE   13   15
        clus
vv       AMP PEAK 15(8Q24.13) MUTATED AMP PEAK 15(8Q24.13) WILD-TYPE
  CLUS_1                           16                             13
  CLUS_2                           25                             15
D15V5, multiclass
        clus
vv       AMP PEAK 15(8Q24.13) MUTATED AMP PEAK 15(8Q24.13) WILD-TYPE
  CLUS_1                           21                             12
  CLUS_2                            9                              8
  CLUS_3                           28                             16
D15V6, multiclass
        clus
vv       AMP PEAK 15(8Q24.13) MUTATED AMP PEAK 15(8Q24.13) WILD-TYPE
  CLUS_1                            9                              4
  CLUS_2                            7                              5
  CLUS_3                           19                             15
  CLUS_4                           23                             12

Clustering(16) Variable = Amp Peak 16(10p15.1) mutation analysis
D16V1, multiclass
        clus
vv       AMP PEAK 16(10P15.1) MUTATED AMP PEAK 16(10P15.1) WILD-TYPE
  CLUS_1                            3                             25
  CLUS_2                            6                             30
  CLUS_3                           10                             23
D16V2, multiclass
        clus
vv       AMP PEAK 16(10P15.1) MUTATED AMP PEAK 16(10P15.1) WILD-TYPE
  CLUS_1                            4                             19
  CLUS_2                            8                             20
  CLUS_3                            6                             39
D16V3, multiclass
D16V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 16(10P15.1) MUTATED     10    4
  AMP PEAK 16(10P15.1) WILD-TYPE   19   36
        clus
vv       AMP PEAK 16(10P15.1) MUTATED AMP PEAK 16(10P15.1) WILD-TYPE
  CLUS_1                           10                             19
  CLUS_2                            4                             36
D16V5, multiclass
        clus
vv       AMP PEAK 16(10P15.1) MUTATED AMP PEAK 16(10P15.1) WILD-TYPE
  CLUS_1                            9                             24
  CLUS_2                            3                             14
  CLUS_3                            7                             37
D16V6, multiclass
        clus
vv       AMP PEAK 16(10P15.1) MUTATED AMP PEAK 16(10P15.1) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            3                              9
  CLUS_3                            8                             26
  CLUS_4                            8                             27

Clustering(17) Variable = Amp Peak 17(11q13.3) mutation analysis
D17V1, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                            3                             25
  CLUS_2                            6                             30
  CLUS_3                            8                             25
D17V2, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                            4                             19
  CLUS_2                            3                             25
  CLUS_3                           10                             35
D17V3, multiclass
D17V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 17(11Q13.3) MUTATED      5    5
  AMP PEAK 17(11Q13.3) WILD-TYPE   24   35
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                            5                             24
  CLUS_2                            5                             35
D17V5, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                            8                             25
  CLUS_2                            5                             12
  CLUS_3                            4                             40
D17V6, multiclass
        clus
vv       AMP PEAK 17(11Q13.3) MUTATED AMP PEAK 17(11Q13.3) WILD-TYPE
  CLUS_1                            0                             13
  CLUS_2                            4                              8
  CLUS_3                            3                             31
  CLUS_4                           10                             25

Clustering(18) Variable = Amp Peak 18(12q23.1) mutation analysis
D18V1, multiclass
        clus
vv       AMP PEAK 18(12Q23.1) MUTATED AMP PEAK 18(12Q23.1) WILD-TYPE
  CLUS_1                            5                             23
  CLUS_2                            1                             35
  CLUS_3                           13                             20
D18V2, multiclass
        clus
vv       AMP PEAK 18(12Q23.1) MUTATED AMP PEAK 18(12Q23.1) WILD-TYPE
  CLUS_1                            1                             22
  CLUS_2                            6                             22
  CLUS_3                           12                             33
D18V3, multiclass
D18V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 18(12Q23.1) MUTATED      8    5
  AMP PEAK 18(12Q23.1) WILD-TYPE   21   35
        clus
vv       AMP PEAK 18(12Q23.1) MUTATED AMP PEAK 18(12Q23.1) WILD-TYPE
  CLUS_1                            8                             21
  CLUS_2                            5                             35
D18V5, multiclass
        clus
vv       AMP PEAK 18(12Q23.1) MUTATED AMP PEAK 18(12Q23.1) WILD-TYPE
  CLUS_1                            6                             27
  CLUS_2                            2                             15
  CLUS_3                           11                             33
D18V6, multiclass
        clus
vv       AMP PEAK 18(12Q23.1) MUTATED AMP PEAK 18(12Q23.1) WILD-TYPE
  CLUS_1                            2                             11
  CLUS_2                            1                             11
  CLUS_3                            6                             28
  CLUS_4                           10                             25

Clustering(19) Variable = Amp Peak 19(13q32.3) mutation analysis
D19V1, multiclass
        clus
vv       AMP PEAK 19(13Q32.3) MUTATED AMP PEAK 19(13Q32.3) WILD-TYPE
  CLUS_1                            6                             22
  CLUS_2                            2                             34
  CLUS_3                           14                             19
D19V2, multiclass
        clus
vv       AMP PEAK 19(13Q32.3) MUTATED AMP PEAK 19(13Q32.3) WILD-TYPE
  CLUS_1                            2                             21
  CLUS_2                            9                             19
  CLUS_3                           11                             34
D19V3, multiclass
D19V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 19(13Q32.3) MUTATED      9    6
  AMP PEAK 19(13Q32.3) WILD-TYPE   20   34
        clus
vv       AMP PEAK 19(13Q32.3) MUTATED AMP PEAK 19(13Q32.3) WILD-TYPE
  CLUS_1                            9                             20
  CLUS_2                            6                             34
D19V5, multiclass
        clus
vv       AMP PEAK 19(13Q32.3) MUTATED AMP PEAK 19(13Q32.3) WILD-TYPE
  CLUS_1                            7                             26
  CLUS_2                            6                             11
  CLUS_3                            9                             35
D19V6, multiclass
        clus
vv       AMP PEAK 19(13Q32.3) MUTATED AMP PEAK 19(13Q32.3) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            5                              7
  CLUS_3                            8                             26
  CLUS_4                            8                             27

Clustering(20) Variable = Amp Peak 20(15q21.3) mutation analysis
D20V1, multiclass
        clus
vv       AMP PEAK 20(15Q21.3) MUTATED AMP PEAK 20(15Q21.3) WILD-TYPE
  CLUS_1                            1                             27
  CLUS_2                            4                             32
  CLUS_3                           10                             23
D20V2, multiclass
        clus
vv       AMP PEAK 20(15Q21.3) MUTATED AMP PEAK 20(15Q21.3) WILD-TYPE
  CLUS_1                            3                             20
  CLUS_2                            2                             26
  CLUS_3                            9                             36
D20V3, multiclass
D20V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 20(15Q21.3) MUTATED      6    6
  AMP PEAK 20(15Q21.3) WILD-TYPE   23   34
        clus
vv       AMP PEAK 20(15Q21.3) MUTATED AMP PEAK 20(15Q21.3) WILD-TYPE
  CLUS_1                            6                             23
  CLUS_2                            6                             34
D20V5, multiclass
        clus
vv       AMP PEAK 20(15Q21.3) MUTATED AMP PEAK 20(15Q21.3) WILD-TYPE
  CLUS_1                            6                             27
  CLUS_2                            2                             15
  CLUS_3                            7                             37
D20V6, multiclass
        clus
vv       AMP PEAK 20(15Q21.3) MUTATED AMP PEAK 20(15Q21.3) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            1                             11
  CLUS_3                            4                             30
  CLUS_4                            9                             26

Clustering(21) Variable = Amp Peak 21(15q26.3) mutation analysis
D21V1, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                            1                             27
  CLUS_2                            5                             31
  CLUS_3                            9                             24
D21V2, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                            4                             19
  CLUS_2                            3                             25
  CLUS_3                            7                             38
D21V3, multiclass
D21V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 21(15Q26.3) MUTATED      6    6
  AMP PEAK 21(15Q26.3) WILD-TYPE   23   34
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                            6                             23
  CLUS_2                            6                             34
D21V5, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                            7                             26
  CLUS_2                            2                             15
  CLUS_3                            6                             38
D21V6, multiclass
        clus
vv       AMP PEAK 21(15Q26.3) MUTATED AMP PEAK 21(15Q26.3) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            1                             11
  CLUS_3                            6                             28
  CLUS_4                            7                             28

Clustering(22) Variable = Amp Peak 22(17p11.2) mutation analysis
D22V1, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                            1                             27
  CLUS_2                            3                             33
  CLUS_3                           11                             22
D22V2, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                            3                             20
  CLUS_2                            3                             25
  CLUS_3                            8                             37
D22V3, multiclass
D22V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 22(17P11.2) MUTATED      6    4
  AMP PEAK 22(17P11.2) WILD-TYPE   23   36
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                            6                             23
  CLUS_2                            4                             36
D22V5, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                            5                             28
  CLUS_2                            2                             15
  CLUS_3                            8                             36
D22V6, multiclass
        clus
vv       AMP PEAK 22(17P11.2) MUTATED AMP PEAK 22(17P11.2) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            0                             12
  CLUS_3                            5                             29
  CLUS_4                            9                             26

Clustering(23) Variable = Amp Peak 23(17q23.1) mutation analysis
D23V1, multiclass
        clus
vv       AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE
  CLUS_1                            9                             19
  CLUS_2                           11                             25
  CLUS_3                           20                             13
D23V2, multiclass
        clus
vv       AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE
  CLUS_1                            7                             16
  CLUS_2                           13                             15
  CLUS_3                           19                             26
D23V3, multiclass
D23V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 23(17Q23.1) MUTATED     16   15
  AMP PEAK 23(17Q23.1) WILD-TYPE   13   25
        clus
vv       AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE
  CLUS_1                           16                             13
  CLUS_2                           15                             25
D23V5, multiclass
        clus
vv       AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE
  CLUS_1                           15                             18
  CLUS_2                            5                             12
  CLUS_3                           20                             24
D23V6, multiclass
        clus
vv       AMP PEAK 23(17Q23.1) MUTATED AMP PEAK 23(17Q23.1) WILD-TYPE
  CLUS_1                            4                              9
  CLUS_2                            5                              7
  CLUS_3                           17                             17
  CLUS_4                           14                             21

Clustering(24) Variable = Amp Peak 24(17q25.3) mutation analysis
D24V1, multiclass
        clus
vv       AMP PEAK 24(17Q25.3) MUTATED AMP PEAK 24(17Q25.3) WILD-TYPE
  CLUS_1                           10                             18
  CLUS_2                           10                             26
  CLUS_3                           24                              9
D24V2, multiclass
        clus
vv       AMP PEAK 24(17Q25.3) MUTATED AMP PEAK 24(17Q25.3) WILD-TYPE
  CLUS_1                            6                             17
  CLUS_2                           13                             15
  CLUS_3                           24                             21
D24V3, multiclass
D24V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 24(17Q25.3) MUTATED     14   18
  AMP PEAK 24(17Q25.3) WILD-TYPE   15   22
        clus
vv       AMP PEAK 24(17Q25.3) MUTATED AMP PEAK 24(17Q25.3) WILD-TYPE
  CLUS_1                           14                             15
  CLUS_2                           18                             22
D24V5, multiclass
        clus
vv       AMP PEAK 24(17Q25.3) MUTATED AMP PEAK 24(17Q25.3) WILD-TYPE
  CLUS_1                           15                             18
  CLUS_2                            6                             11
  CLUS_3                           23                             21
D24V6, multiclass
        clus
vv       AMP PEAK 24(17Q25.3) MUTATED AMP PEAK 24(17Q25.3) WILD-TYPE
  CLUS_1                            5                              8
  CLUS_2                            5                              7
  CLUS_3                           16                             18
  CLUS_4                           18                             17

Clustering(25) Variable = Amp Peak 25(19q13.11) mutation analysis
D25V1, multiclass
        clus
vv       AMP PEAK 25(19Q13.11) MUTATED AMP PEAK 25(19Q13.11) WILD-TYPE
  CLUS_1                            12                              16
  CLUS_2                             6                              30
  CLUS_3                            13                              20
D25V2, multiclass
        clus
vv       AMP PEAK 25(19Q13.11) MUTATED AMP PEAK 25(19Q13.11) WILD-TYPE
  CLUS_1                             7                              16
  CLUS_2                            12                              16
  CLUS_3                            11                              34
D25V3, multiclass
D25V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 25(19Q13.11) MUTATED     12   11
  AMP PEAK 25(19Q13.11) WILD-TYPE   17   29
        clus
vv       AMP PEAK 25(19Q13.11) MUTATED AMP PEAK 25(19Q13.11) WILD-TYPE
  CLUS_1                            12                              17
  CLUS_2                            11                              29
D25V5, multiclass
        clus
vv       AMP PEAK 25(19Q13.11) MUTATED AMP PEAK 25(19Q13.11) WILD-TYPE
  CLUS_1                            12                              21
  CLUS_2                             6                              11
  CLUS_3                            12                              32
D25V6, multiclass
        clus
vv       AMP PEAK 25(19Q13.11) MUTATED AMP PEAK 25(19Q13.11) WILD-TYPE
  CLUS_1                             2                              11
  CLUS_2                             5                               7
  CLUS_3                            12                              22
  CLUS_4                            11                              24

Clustering(26) Variable = Amp Peak 26(20q13.13) mutation analysis
D26V1, multiclass
        clus
vv       AMP PEAK 26(20Q13.13) MUTATED AMP PEAK 26(20Q13.13) WILD-TYPE
  CLUS_1                            10                              18
  CLUS_2                             8                              28
  CLUS_3                            17                              16
D26V2, multiclass
        clus
vv       AMP PEAK 26(20Q13.13) MUTATED AMP PEAK 26(20Q13.13) WILD-TYPE
  CLUS_1                             6                              17
  CLUS_2                            11                              17
  CLUS_3                            17                              28
D26V3, multiclass
D26V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 26(20Q13.13) MUTATED     12   13
  AMP PEAK 26(20Q13.13) WILD-TYPE   17   27
        clus
vv       AMP PEAK 26(20Q13.13) MUTATED AMP PEAK 26(20Q13.13) WILD-TYPE
  CLUS_1                            12                              17
  CLUS_2                            13                              27
D26V5, multiclass
        clus
vv       AMP PEAK 26(20Q13.13) MUTATED AMP PEAK 26(20Q13.13) WILD-TYPE
  CLUS_1                            12                              21
  CLUS_2                             7                              10
  CLUS_3                            15                              29
D26V6, multiclass
        clus
vv       AMP PEAK 26(20Q13.13) MUTATED AMP PEAK 26(20Q13.13) WILD-TYPE
  CLUS_1                             2                              11
  CLUS_2                             6                               6
  CLUS_3                            11                              23
  CLUS_4                            15                              20

Clustering(27) Variable = Del Peak  1(1p36.32) mutation analysis
D27V1, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           10                             18
  CLUS_2                           13                             23
  CLUS_3                           22                             11
D27V2, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            7                             16
  CLUS_2                           19                              9
  CLUS_3                           18                             27
D27V3, multiclass
D27V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.32) MUTATED     15   18
  DEL PEAK  1(1P36.32) WILD-TYPE   14   22
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           15                             14
  CLUS_2                           18                             22
D27V5, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                           17                             16
  CLUS_2                            5                             12
  CLUS_3                           21                             23
D27V6, multiclass
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  CLUS_1                            3                             10
  CLUS_2                            3                              9
  CLUS_3                           19                             15
  CLUS_4                           18                             17

Clustering(28) Variable = Del Peak  2(2q22.1) mutation analysis
D28V1, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           4                            24
  CLUS_2                           2                            34
  CLUS_3                           4                            29
D28V2, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           3                            20
  CLUS_2                           1                            27
  CLUS_3                           6                            39
D28V3, multiclass
D28V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(2Q22.1) MUTATED      2    5
  DEL PEAK  2(2Q22.1) WILD-TYPE   27   35
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           2                            27
  CLUS_2                           5                            35
D28V5, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           1                            32
  CLUS_2                           4                            13
  CLUS_3                           5                            39
D28V6, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           2                            11
  CLUS_2                           3                             9
  CLUS_3                           0                            34
  CLUS_4                           5                            30

Clustering(29) Variable = Del Peak  3(2q37.3) mutation analysis
D29V1, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           4                            24
  CLUS_2                           4                            32
  CLUS_3                           8                            25
D29V2, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           5                            18
  CLUS_2                           3                            25
  CLUS_3                           8                            37
D29V3, multiclass
D29V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2Q37.3) MUTATED      4    7
  DEL PEAK  3(2Q37.3) WILD-TYPE   25   33
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           4                            25
  CLUS_2                           7                            33
D29V5, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           2                            31
  CLUS_2                           5                            12
  CLUS_3                           9                            35
D29V6, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                           1                            12
  CLUS_2                           4                             8
  CLUS_3                           1                            33
  CLUS_4                          10                            25

Clustering(30) Variable = Del Peak  4(3p13) mutation analysis
D30V1, multiclass
        clus
vv       DEL PEAK  4(3P13) MUTATED DEL PEAK  4(3P13) WILD-TYPE
  CLUS_1                         2                          26
  CLUS_2                         5                          31
  CLUS_3                         9                          24
D30V2, multiclass
        clus
vv       DEL PEAK  4(3P13) MUTATED DEL PEAK  4(3P13) WILD-TYPE
  CLUS_1                         4                          19
  CLUS_2                         7                          21
  CLUS_3                         5                          40
D30V3, multiclass
D30V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  4(3P13) MUTATED     11    1
  DEL PEAK  4(3P13) WILD-TYPE   18   39
        clus
vv       DEL PEAK  4(3P13) MUTATED DEL PEAK  4(3P13) WILD-TYPE
  CLUS_1                        11                          18
  CLUS_2                         1                          39
D30V5, multiclass
        clus
vv       DEL PEAK  4(3P13) MUTATED DEL PEAK  4(3P13) WILD-TYPE
  CLUS_1                        10                          23
  CLUS_2                         1                          16
  CLUS_3                         3                          41
D30V6, multiclass
        clus
vv       DEL PEAK  4(3P13) MUTATED DEL PEAK  4(3P13) WILD-TYPE
  CLUS_1                         0                          13
  CLUS_2                         0                          12
  CLUS_3                         7                          27
  CLUS_4                         7                          28

Clustering(31) Variable = Del Peak  5(4q24) mutation analysis
D31V1, multiclass
        clus
vv       DEL PEAK  5(4Q24) MUTATED DEL PEAK  5(4Q24) WILD-TYPE
  CLUS_1                        13                          15
  CLUS_2                         6                          30
  CLUS_3                        22                          11
D31V2, multiclass
        clus
vv       DEL PEAK  5(4Q24) MUTATED DEL PEAK  5(4Q24) WILD-TYPE
  CLUS_1                         6                          17
  CLUS_2                        15                          13
  CLUS_3                        20                          25
D31V3, multiclass
D31V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  5(4Q24) MUTATED     15   19
  DEL PEAK  5(4Q24) WILD-TYPE   14   21
        clus
vv       DEL PEAK  5(4Q24) MUTATED DEL PEAK  5(4Q24) WILD-TYPE
  CLUS_1                        15                          14
  CLUS_2                        19                          21
D31V5, multiclass
        clus
vv       DEL PEAK  5(4Q24) MUTATED DEL PEAK  5(4Q24) WILD-TYPE
  CLUS_1                        17                          16
  CLUS_2                         9                           8
  CLUS_3                        15                          29
D31V6, multiclass
        clus
vv       DEL PEAK  5(4Q24) MUTATED DEL PEAK  5(4Q24) WILD-TYPE
  CLUS_1                         3                          10
  CLUS_2                         6                           6
  CLUS_3                        15                          19
  CLUS_4                        17                          18

Clustering(32) Variable = Del Peak  6(4q35.1) mutation analysis
D32V1, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                          11                            17
  CLUS_2                           9                            27
  CLUS_3                          22                            11
D32V2, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                           6                            17
  CLUS_2                          17                            11
  CLUS_3                          19                            26
D32V3, multiclass
D32V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(4Q35.1) MUTATED     16   17
  DEL PEAK  6(4Q35.1) WILD-TYPE   13   23
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                          16                            13
  CLUS_2                          17                            23
D32V5, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                          18                            15
  CLUS_2                           8                             9
  CLUS_3                          16                            28
D32V6, multiclass
        clus
vv       DEL PEAK  6(4Q35.1) MUTATED DEL PEAK  6(4Q35.1) WILD-TYPE
  CLUS_1                           3                            10
  CLUS_2                           6                             6
  CLUS_3                          18                            16
  CLUS_4                          15                            20

Clustering(33) Variable = Del Peak  7(5q23.1) mutation analysis
D33V1, multiclass
        clus
vv       DEL PEAK  7(5Q23.1) MUTATED DEL PEAK  7(5Q23.1) WILD-TYPE
  CLUS_1                           2                            26
  CLUS_2                           4                            32
  CLUS_3                           8                            25
D33V2, multiclass
        clus
vv       DEL PEAK  7(5Q23.1) MUTATED DEL PEAK  7(5Q23.1) WILD-TYPE
  CLUS_1                           1                            22
  CLUS_2                           6                            22
  CLUS_3                           6                            39
D33V3, multiclass
D33V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  7(5Q23.1) MUTATED      6    3
  DEL PEAK  7(5Q23.1) WILD-TYPE   23   37
        clus
vv       DEL PEAK  7(5Q23.1) MUTATED DEL PEAK  7(5Q23.1) WILD-TYPE
  CLUS_1                           6                            23
  CLUS_2                           3                            37
D33V5, multiclass
        clus
vv       DEL PEAK  7(5Q23.1) MUTATED DEL PEAK  7(5Q23.1) WILD-TYPE
  CLUS_1                           4                            29
  CLUS_2                           1                            16
  CLUS_3                           9                            35
D33V6, multiclass
        clus
vv       DEL PEAK  7(5Q23.1) MUTATED DEL PEAK  7(5Q23.1) WILD-TYPE
  CLUS_1                           2                            11
  CLUS_2                           0                            12
  CLUS_3                           6                            28
  CLUS_4                           6                            29

Clustering(34) Variable = Del Peak  8(6q16.3) mutation analysis
D34V1, multiclass
        clus
vv       DEL PEAK  8(6Q16.3) MUTATED DEL PEAK  8(6Q16.3) WILD-TYPE
  CLUS_1                          13                            15
  CLUS_2                          10                            26
  CLUS_3                          13                            20
D34V2, multiclass
        clus
vv       DEL PEAK  8(6Q16.3) MUTATED DEL PEAK  8(6Q16.3) WILD-TYPE
  CLUS_1                           8                            15
  CLUS_2                          12                            16
  CLUS_3                          15                            30
D34V3, multiclass
D34V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(6Q16.3) MUTATED     14   11
  DEL PEAK  8(6Q16.3) WILD-TYPE   15   29
        clus
vv       DEL PEAK  8(6Q16.3) MUTATED DEL PEAK  8(6Q16.3) WILD-TYPE
  CLUS_1                          14                            15
  CLUS_2                          11                            29
D34V5, multiclass
        clus
vv       DEL PEAK  8(6Q16.3) MUTATED DEL PEAK  8(6Q16.3) WILD-TYPE
  CLUS_1                          14                            19
  CLUS_2                           4                            13
  CLUS_3                          16                            28
D34V6, multiclass
        clus
vv       DEL PEAK  8(6Q16.3) MUTATED DEL PEAK  8(6Q16.3) WILD-TYPE
  CLUS_1                           5                             8
  CLUS_2                           4                             8
  CLUS_3                          16                            18
  CLUS_4                           9                            26

Clustering(35) Variable = Del Peak  9(6q26) mutation analysis
D35V1, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        13                          15
  CLUS_2                        10                          26
  CLUS_3                        16                          17
D35V2, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                         8                          15
  CLUS_2                        13                          15
  CLUS_3                        17                          28
D35V3, multiclass
D35V4, binary
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  9(6Q26) MUTATED     14   11
  DEL PEAK  9(6Q26) WILD-TYPE   15   29
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        14                          15
  CLUS_2                        11                          29
D35V5, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                        17                          16
  CLUS_2                         6                          11
  CLUS_3                        14                          30
D35V6, multiclass
        clus
vv       DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE
  CLUS_1                         5                           8
  CLUS_2                         5                           7
  CLUS_3                        18                          16
  CLUS_4                         9                          26

Clustering(36) Variable = Del Peak 10(8p23.2) mutation analysis
D36V1, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                          27                             1
  CLUS_2                          12                            24
  CLUS_3                          21                            12
D36V2, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                          12                            11
  CLUS_2                          17                            11
  CLUS_3                          30                            15
D36V3, multiclass
D36V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(8P23.2) MUTATED     16   26
  DEL PEAK 10(8P23.2) WILD-TYPE   13   14
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                          16                            13
  CLUS_2                          26                            14
D36V5, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                          19                            14
  CLUS_2                          13                             4
  CLUS_3                          26                            18
D36V6, multiclass
        clus
vv       DEL PEAK 10(8P23.2) MUTATED DEL PEAK 10(8P23.2) WILD-TYPE
  CLUS_1                          10                             3
  CLUS_2                          10                             2
  CLUS_3                          16                            18
  CLUS_4                          22                            13

Clustering(37) Variable = Del Peak 11(9p21.3) mutation analysis
D37V1, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                          14                            14
  CLUS_2                          10                            26
  CLUS_3                          15                            18
D37V2, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           9                            14
  CLUS_2                          13                            15
  CLUS_3                          17                            28
D37V3, multiclass
D37V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(9P21.3) MUTATED     16   17
  DEL PEAK 11(9P21.3) WILD-TYPE   13   23
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                          16                            13
  CLUS_2                          17                            23
D37V5, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                          16                            17
  CLUS_2                           9                             8
  CLUS_3                          13                            31
D37V6, multiclass
        clus
vv       DEL PEAK 11(9P21.3) MUTATED DEL PEAK 11(9P21.3) WILD-TYPE
  CLUS_1                           5                             8
  CLUS_2                           7                             5
  CLUS_3                          14                            20
  CLUS_4                          12                            23

Clustering(38) Variable = Del Peak 12(10p15.3) mutation analysis
D38V1, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            3                             25
  CLUS_2                            2                             34
  CLUS_3                            3                             30
D38V2, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            2                             21
  CLUS_2                            3                             25
  CLUS_3                            3                             42
D38V3, multiclass
D38V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 12(10P15.3) MUTATED      1    3
  DEL PEAK 12(10P15.3) WILD-TYPE   28   37
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            1                             28
  CLUS_2                            3                             37
D38V5, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            3                             30
  CLUS_2                            3                             14
  CLUS_3                            2                             42
D38V6, multiclass
        clus
vv       DEL PEAK 12(10P15.3) MUTATED DEL PEAK 12(10P15.3) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            2                             10
  CLUS_3                            3                             31
  CLUS_4                            2                             33

Clustering(39) Variable = Del Peak 13(10q23.31) mutation analysis
D39V1, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                             5                              23
  CLUS_2                            10                              26
  CLUS_3                            16                              17
D39V2, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                             8                              15
  CLUS_2                             7                              21
  CLUS_3                            16                              29
D39V3, multiclass
D39V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 13(10Q23.31) MUTATED     14   10
  DEL PEAK 13(10Q23.31) WILD-TYPE   15   30
        clus
vv       DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                            14                              15
  CLUS_2                            10                              30
D39V5, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                            11                              22
  CLUS_2                             8                               9
  CLUS_3                            12                              32
D39V6, multiclass
        clus
vv       DEL PEAK 13(10Q23.31) MUTATED DEL PEAK 13(10Q23.31) WILD-TYPE
  CLUS_1                             0                              13
  CLUS_2                             6                               6
  CLUS_3                            10                              24
  CLUS_4                            15                              20

Clustering(40) Variable = Del Peak 14(10q24.33) mutation analysis
D40V1, multiclass
        clus
vv       DEL PEAK 14(10Q24.33) MUTATED DEL PEAK 14(10Q24.33) WILD-TYPE
  CLUS_1                             4                              24
  CLUS_2                            11                              25
  CLUS_3                            14                              19
D40V2, multiclass
        clus
vv       DEL PEAK 14(10Q24.33) MUTATED DEL PEAK 14(10Q24.33) WILD-TYPE
  CLUS_1                             9                              14
  CLUS_2                             8                              20
  CLUS_3                            12                              33
D40V3, multiclass
D40V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 14(10Q24.33) MUTATED     12    8
  DEL PEAK 14(10Q24.33) WILD-TYPE   17   32
        clus
vv       DEL PEAK 14(10Q24.33) MUTATED DEL PEAK 14(10Q24.33) WILD-TYPE
  CLUS_1                            12                              17
  CLUS_2                             8                              32
D40V5, multiclass
        clus
vv       DEL PEAK 14(10Q24.33) MUTATED DEL PEAK 14(10Q24.33) WILD-TYPE
  CLUS_1                            13                              20
  CLUS_2                             8                               9
  CLUS_3                             8                              36
D40V6, multiclass
        clus
vv       DEL PEAK 14(10Q24.33) MUTATED DEL PEAK 14(10Q24.33) WILD-TYPE
  CLUS_1                             0                              13
  CLUS_2                             6                               6
  CLUS_3                            12                              22
  CLUS_4                            11                              24

Clustering(41) Variable = Del Peak 15(11q14.1) mutation analysis
D41V1, multiclass
        clus
vv       DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE
  CLUS_1                            5                             23
  CLUS_2                            5                             31
  CLUS_3                            8                             25
D41V2, multiclass
        clus
vv       DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE
  CLUS_1                            4                             19
  CLUS_2                            4                             24
  CLUS_3                           10                             35
D41V3, multiclass
D41V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(11Q14.1) MUTATED      7    7
  DEL PEAK 15(11Q14.1) WILD-TYPE   22   33
        clus
vv       DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE
  CLUS_1                            7                             22
  CLUS_2                            7                             33
D41V5, multiclass
        clus
vv       DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE
  CLUS_1                            5                             28
  CLUS_2                            4                             13
  CLUS_3                            8                             36
D41V6, multiclass
        clus
vv       DEL PEAK 15(11Q14.1) MUTATED DEL PEAK 15(11Q14.1) WILD-TYPE
  CLUS_1                            2                             11
  CLUS_2                            2                             10
  CLUS_3                            5                             29
  CLUS_4                            8                             27

Clustering(42) Variable = Del Peak 16(12p12.1) mutation analysis
D42V1, multiclass
        clus
vv       DEL PEAK 16(12P12.1) MUTATED DEL PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                            9                             19
  CLUS_2                            5                             31
  CLUS_3                            9                             24
D42V2, multiclass
        clus
vv       DEL PEAK 16(12P12.1) MUTATED DEL PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                            5                             18
  CLUS_2                            6                             22
  CLUS_3                           12                             33
D42V3, multiclass
D42V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 16(12P12.1) MUTATED      5   13
  DEL PEAK 16(12P12.1) WILD-TYPE   24   27
        clus
vv       DEL PEAK 16(12P12.1) MUTATED DEL PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                            5                             24
  CLUS_2                           13                             27
D42V5, multiclass
        clus
vv       DEL PEAK 16(12P12.1) MUTATED DEL PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                            6                             27
  CLUS_2                            7                             10
  CLUS_3                            9                             35
D42V6, multiclass
        clus
vv       DEL PEAK 16(12P12.1) MUTATED DEL PEAK 16(12P12.1) WILD-TYPE
  CLUS_1                            2                             11
  CLUS_2                            6                              6
  CLUS_3                            6                             28
  CLUS_4                            8                             27

Clustering(43) Variable = Del Peak 17(12q24.33) mutation analysis
D43V1, multiclass
        clus
vv       DEL PEAK 17(12Q24.33) MUTATED DEL PEAK 17(12Q24.33) WILD-TYPE
  CLUS_1                             6                              22
  CLUS_2                             4                              32
  CLUS_3                             6                              27
D43V2, multiclass
        clus
vv       DEL PEAK 17(12Q24.33) MUTATED DEL PEAK 17(12Q24.33) WILD-TYPE
  CLUS_1                             4                              19
  CLUS_2                             5                              23
  CLUS_3                             7                              38
D43V3, multiclass
D43V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 17(12Q24.33) MUTATED      4    7
  DEL PEAK 17(12Q24.33) WILD-TYPE   25   33
        clus
vv       DEL PEAK 17(12Q24.33) MUTATED DEL PEAK 17(12Q24.33) WILD-TYPE
  CLUS_1                             4                              25
  CLUS_2                             7                              33
D43V5, multiclass
        clus
vv       DEL PEAK 17(12Q24.33) MUTATED DEL PEAK 17(12Q24.33) WILD-TYPE
  CLUS_1                             7                              26
  CLUS_2                             5                              12
  CLUS_3                             4                              40
D43V6, multiclass
        clus
vv       DEL PEAK 17(12Q24.33) MUTATED DEL PEAK 17(12Q24.33) WILD-TYPE
  CLUS_1                             1                              12
  CLUS_2                             3                               9
  CLUS_3                             7                              27
  CLUS_4                             5                              30

Clustering(44) Variable = Del Peak 18(13q14.2) mutation analysis
D44V1, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                            9                             19
  CLUS_2                           12                             24
  CLUS_3                           22                             11
D44V2, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                            9                             14
  CLUS_2                           17                             11
  CLUS_3                           17                             28
D44V3, multiclass
D44V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(13Q14.2) MUTATED     18   15
  DEL PEAK 18(13Q14.2) WILD-TYPE   11   25
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                           18                             11
  CLUS_2                           15                             25
D44V5, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                           19                             14
  CLUS_2                            9                              8
  CLUS_3                           14                             30
D44V6, multiclass
        clus
vv       DEL PEAK 18(13Q14.2) MUTATED DEL PEAK 18(13Q14.2) WILD-TYPE
  CLUS_1                            3                             10
  CLUS_2                            6                              6
  CLUS_3                           18                             16
  CLUS_4                           15                             20

Clustering(45) Variable = Del Peak 19(14q23.3) mutation analysis
D45V1, multiclass
        clus
vv       DEL PEAK 19(14Q23.3) MUTATED DEL PEAK 19(14Q23.3) WILD-TYPE
  CLUS_1                           10                             18
  CLUS_2                            8                             28
  CLUS_3                           18                             15
D45V2, multiclass
        clus
vv       DEL PEAK 19(14Q23.3) MUTATED DEL PEAK 19(14Q23.3) WILD-TYPE
  CLUS_1                            8                             15
  CLUS_2                           14                             14
  CLUS_3                           14                             31
D45V3, multiclass
D45V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(14Q23.3) MUTATED     15   11
  DEL PEAK 19(14Q23.3) WILD-TYPE   14   29
        clus
vv       DEL PEAK 19(14Q23.3) MUTATED DEL PEAK 19(14Q23.3) WILD-TYPE
  CLUS_1                           15                             14
  CLUS_2                           11                             29
D45V5, multiclass
        clus
vv       DEL PEAK 19(14Q23.3) MUTATED DEL PEAK 19(14Q23.3) WILD-TYPE
  CLUS_1                           13                             20
  CLUS_2                            8                              9
  CLUS_3                           14                             30
D45V6, multiclass
        clus
vv       DEL PEAK 19(14Q23.3) MUTATED DEL PEAK 19(14Q23.3) WILD-TYPE
  CLUS_1                            3                             10
  CLUS_2                            8                              4
  CLUS_3                           14                             20
  CLUS_4                           10                             25

Clustering(46) Variable = Del Peak 20(15q15.1) mutation analysis
D46V1, multiclass
        clus
vv       DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE
  CLUS_1                            7                             21
  CLUS_2                            1                             35
  CLUS_3                           10                             23
D46V2, multiclass
        clus
vv       DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE
  CLUS_1                            3                             20
  CLUS_2                            7                             21
  CLUS_3                            8                             37
D46V3, multiclass
D46V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(15Q15.1) MUTATED      9    4
  DEL PEAK 20(15Q15.1) WILD-TYPE   20   36
        clus
vv       DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE
  CLUS_1                            9                             20
  CLUS_2                            4                             36
D46V5, multiclass
        clus
vv       DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE
  CLUS_1                            6                             27
  CLUS_2                            2                             15
  CLUS_3                            9                             35
D46V6, multiclass
        clus
vv       DEL PEAK 20(15Q15.1) MUTATED DEL PEAK 20(15Q15.1) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            2                             10
  CLUS_3                            8                             26
  CLUS_4                            6                             29

Clustering(47) Variable = Del Peak 21(16q23.1) mutation analysis
D47V1, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            9                             19
  CLUS_2                           10                             26
  CLUS_3                           23                             10
D47V2, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            5                             18
  CLUS_2                           18                             10
  CLUS_3                           18                             27
D47V3, multiclass
D47V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(16Q23.1) MUTATED     18   15
  DEL PEAK 21(16Q23.1) WILD-TYPE   11   25
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                           18                             11
  CLUS_2                           15                             25
D47V5, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                           18                             15
  CLUS_2                            5                             12
  CLUS_3                           18                             26
D47V6, multiclass
        clus
vv       DEL PEAK 21(16Q23.1) MUTATED DEL PEAK 21(16Q23.1) WILD-TYPE
  CLUS_1                            2                             11
  CLUS_2                            3                              9
  CLUS_3                           20                             14
  CLUS_4                           16                             19

Clustering(48) Variable = Del Peak 22(17p12) mutation analysis
D48V1, multiclass
        clus
vv       DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                         16                           12
  CLUS_2                         17                           19
  CLUS_3                         24                            9
D48V2, multiclass
        clus
vv       DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                         11                           12
  CLUS_2                         18                           10
  CLUS_3                         27                           18
D48V3, multiclass
D48V4, binary
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(17P12) MUTATED     15   28
  DEL PEAK 22(17P12) WILD-TYPE   14   12
        clus
vv       DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                         15                           14
  CLUS_2                         28                           12
D48V5, multiclass
        clus
vv       DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                         20                           13
  CLUS_2                         15                            2
  CLUS_3                         21                           23
D48V6, multiclass
        clus
vv       DEL PEAK 22(17P12) MUTATED DEL PEAK 22(17P12) WILD-TYPE
  CLUS_1                          4                            9
  CLUS_2                         11                            1
  CLUS_3                         17                           17
  CLUS_4                         24                           11

Clustering(49) Variable = Del Peak 23(18q21.2) mutation analysis
D49V1, multiclass
        clus
vv       DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE
  CLUS_1                            4                             24
  CLUS_2                            4                             32
  CLUS_3                           10                             23
D49V2, multiclass
        clus
vv       DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE
  CLUS_1                            1                             22
  CLUS_2                            7                             21
  CLUS_3                            9                             36
D49V3, multiclass
D49V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(18Q21.2) MUTATED      6    9
  DEL PEAK 23(18Q21.2) WILD-TYPE   23   31
        clus
vv       DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE
  CLUS_1                            6                             23
  CLUS_2                            9                             31
D49V5, multiclass
        clus
vv       DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE
  CLUS_1                            5                             28
  CLUS_2                            2                             15
  CLUS_3                           10                             34
D49V6, multiclass
        clus
vv       DEL PEAK 23(18Q21.2) MUTATED DEL PEAK 23(18Q21.2) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            2                             10
  CLUS_3                            7                             27
  CLUS_4                            7                             28

Clustering(50) Variable = Del Peak 24(19p13.3) mutation analysis
D50V1, multiclass
        clus
vv       DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE
  CLUS_1                            8                             20
  CLUS_2                            3                             33
  CLUS_3                            9                             24
D50V2, multiclass
        clus
vv       DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE
  CLUS_1                            3                             20
  CLUS_2                           10                             18
  CLUS_3                            7                             38
D50V3, multiclass
D50V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(19P13.3) MUTATED     10    8
  DEL PEAK 24(19P13.3) WILD-TYPE   19   32
        clus
vv       DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE
  CLUS_1                           10                             19
  CLUS_2                            8                             32
D50V5, multiclass
        clus
vv       DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE
  CLUS_1                            7                             26
  CLUS_2                            7                             10
  CLUS_3                            6                             38
D50V6, multiclass
        clus
vv       DEL PEAK 24(19P13.3) MUTATED DEL PEAK 24(19P13.3) WILD-TYPE
  CLUS_1                            1                             12
  CLUS_2                            5                              7
  CLUS_3                            9                             25
  CLUS_4                            5                             30

Clustering(51) Variable = Del Peak 25(22q12.1) mutation analysis
D51V1, multiclass
        clus
vv       DEL PEAK 25(22Q12.1) MUTATED DEL PEAK 25(22Q12.1) WILD-TYPE
  CLUS_1                            1                             27
  CLUS_2                           10                             26
  CLUS_3                            7                             26
D51V2, multiclass
        clus
vv       DEL PEAK 25(22Q12.1) MUTATED DEL PEAK 25(22Q12.1) WILD-TYPE
  CLUS_1                            7                             16
  CLUS_2                            5                             23
  CLUS_3                            6                             39
D51V3, multiclass
D51V4, binary
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(22Q12.1) MUTATED      8    6
  DEL PEAK 25(22Q12.1) WILD-TYPE   21   34
        clus
vv       DEL PEAK 25(22Q12.1) MUTATED DEL PEAK 25(22Q12.1) WILD-TYPE
  CLUS_1                            8                             21
  CLUS_2                            6                             34
D51V5, multiclass
        clus
vv       DEL PEAK 25(22Q12.1) MUTATED DEL PEAK 25(22Q12.1) WILD-TYPE
  CLUS_1                            6                             27
  CLUS_2                            3                             14
  CLUS_3                            9                             35
D51V6, multiclass
        clus
vv       DEL PEAK 25(22Q12.1) MUTATED DEL PEAK 25(22Q12.1) WILD-TYPE
  CLUS_1                            2                             11
  CLUS_2                            3                              9
  CLUS_3                            7                             27
  CLUS_4                            6                             29

Clustering(52) Variable = Del Peak 26(22q13.32) mutation analysis
D52V1, multiclass
        clus
vv       DEL PEAK 26(22Q13.32) MUTATED DEL PEAK 26(22Q13.32) WILD-TYPE
  CLUS_1                             2                              26
  CLUS_2                            10                              26
  CLUS_3                            12                              21
D52V2, multiclass
        clus
vv       DEL PEAK 26(22Q13.32) MUTATED DEL PEAK 26(22Q13.32) WILD-TYPE
  CLUS_1                             8                              15
  CLUS_2                             5                              23
  CLUS_3                            11                              34
D52V3, multiclass
D52V4, binary
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 26(22Q13.32) MUTATED      8   10
  DEL PEAK 26(22Q13.32) WILD-TYPE   21   30
        clus
vv       DEL PEAK 26(22Q13.32) MUTATED DEL PEAK 26(22Q13.32) WILD-TYPE
  CLUS_1                             8                              21
  CLUS_2                            10                              30
D52V5, multiclass
        clus
vv       DEL PEAK 26(22Q13.32) MUTATED DEL PEAK 26(22Q13.32) WILD-TYPE
  CLUS_1                             7                              26
  CLUS_2                             5                              12
  CLUS_3                            12                              32
D52V6, multiclass
        clus
vv       DEL PEAK 26(22Q13.32) MUTATED DEL PEAK 26(22Q13.32) WILD-TYPE
  CLUS_1                             3                              10
  CLUS_2                             4                               8
  CLUS_3                             6                              28
  CLUS_4                            11                              24

Clustering(53) Variable = Del Peak 27(Xq27.3) mutation analysis
D53V1, multiclass
        clus
vv       DEL PEAK 27(XQ27.3) MUTATED DEL PEAK 27(XQ27.3) WILD-TYPE
  CLUS_1                           2                            26
  CLUS_2                           2                            34
  CLUS_3                          10                            23
D53V2, multiclass
        clus
vv       DEL PEAK 27(XQ27.3) MUTATED DEL PEAK 27(XQ27.3) WILD-TYPE
  CLUS_1                           1                            22
  CLUS_2                           7                            21
  CLUS_3                           6                            39
D53V3, multiclass
D53V4, binary
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 27(XQ27.3) MUTATED      3    8
  DEL PEAK 27(XQ27.3) WILD-TYPE   26   32
        clus
vv       DEL PEAK 27(XQ27.3) MUTATED DEL PEAK 27(XQ27.3) WILD-TYPE
  CLUS_1                           3                            26
  CLUS_2                           8                            32
D53V5, multiclass
        clus
vv       DEL PEAK 27(XQ27.3) MUTATED DEL PEAK 27(XQ27.3) WILD-TYPE
  CLUS_1                           5                            28
  CLUS_2                           4                            13
  CLUS_3                           5                            39
D53V6, multiclass
        clus
vv       DEL PEAK 27(XQ27.3) MUTATED DEL PEAK 27(XQ27.3) WILD-TYPE
  CLUS_1                           2                            11
  CLUS_2                           3                             9
  CLUS_3                           5                            29
  CLUS_4                           4                            31
                     V1                      V2                      V3 
              "CN_CNMF"      "METHLYATION_CNMF"          "MRNASEQ_CNMF" 
                     V4                      V5                      V6 
"MRNASEQ_CHIERARCHICAL"           "MIRSEQ_CNMF"  "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
