
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Clinical_Cnvsarms_onlysig/broadinstitute.org/cancer.genome.analysis/00498/19/CNV2ClinicalAnalysis_nozzle_onlysig_arm.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Clinical_Cnvsarms_onlysig/broadinstitute.org/cancer.genome.analysis/00498/19/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/cnvarms2cluster/LUAD-TP/2885192/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LUAD-TP/2843279/1.GDAC_clinicalDataPicker.Finished/LUAD-TP.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LUAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LUAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=376, in cluster file=472, common to both=370
[1]  80 370
[1] "1p gain mutation analysis"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               49               321 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               49               321 
[1] "1q gain mutation analysis"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              146               224 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              146               224 
[1] "2p gain mutation analysis"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               43               327 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               43               327 
[1] "2q gain mutation analysis"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               37               333 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               37               333 
[1] "3p gain mutation analysis"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               10               360 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               10               360 
[1] "3q gain mutation analysis"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               23               347 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               23               347 
[1] "4p gain mutation analysis"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               27               343 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               27               343 
[1] "4q gain mutation analysis"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                9               361 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                9               361 
[1] "5p gain mutation analysis"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              138               232 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              138               232 
[1] "5q gain mutation analysis"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               41               329 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               41               329 
[1] "6p gain mutation analysis"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               56               314 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               56               314 
[1] "6q gain mutation analysis"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               15               355 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               15               355 
[1] "7p gain mutation analysis"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              124               246 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              124               246 
[1] "7q gain mutation analysis"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               90               280 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               90               280 
[1] "8p gain mutation analysis"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               47               323 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               47               323 
[1] "8q gain mutation analysis"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              117               253 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              117               253 
[1] "9p gain mutation analysis"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               11               359 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               11               359 
[1] "9q gain mutation analysis"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                5               365 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                5               365 
[1] "10p gain mutation analysis"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                41                329 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                41                329 
[1] "10q gain mutation analysis"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                23                347 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                23                347 
[1] "11p gain mutation analysis"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                30                340 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                30                340 
[1] "11q gain mutation analysis"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                42                328 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                42                328 
[1] "12p gain mutation analysis"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                47                323 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                47                323 
[1] "12q gain mutation analysis"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                39                331 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                39                331 
[1] "13q gain mutation analysis"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                14                356 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                14                356 
[1] "14q gain mutation analysis"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                38                332 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                38                332 
[1] "15q gain mutation analysis"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                10                360 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                10                360 
[1] "16p gain mutation analysis"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                49                321 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                49                321 
[1] "16q gain mutation analysis"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                33                337 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                33                337 
[1] "17p gain mutation analysis"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                21                349 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                21                349 
[1] "17q gain mutation analysis"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                63                307 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                63                307 
[1] "18p gain mutation analysis"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                33                337 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                33                337 
[1] "18q gain mutation analysis"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                20                350 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                20                350 
[1] "19p gain mutation analysis"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 6                364 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 6                364 
[1] "19q gain mutation analysis"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                19                351 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                19                351 
[1] "20p gain mutation analysis"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                50                320 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                50                320 
[1] "20q gain mutation analysis"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                65                305 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                65                305 
[1] "21q gain mutation analysis"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                31                339 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                31                339 
[1] "22q gain mutation analysis"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                15                355 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                15                355 
[1] "Xq gain mutation analysis"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               17               353 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               17               353 
[1] "1p loss mutation analysis"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               26               344 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               26               344 
[1] "1q loss mutation analysis"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               10               360 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               10               360 
[1] "2p loss mutation analysis"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                5               365 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                5               365 
[1] "2q loss mutation analysis"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                3               367 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                3               367 
[1] "3p loss mutation analysis"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               76               294 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               76               294 
[1] "3q loss mutation analysis"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               46               324 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               46               324 
[1] "4p loss mutation analysis"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               34               336 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               34               336 
[1] "4q loss mutation analysis"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               41               329 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               41               329 
[1] "5p loss mutation analysis"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               12               358 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               12               358 
[1] "5q loss mutation analysis"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               48               322 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               48               322 
[1] "6p loss mutation analysis"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               31               339 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               31               339 
[1] "6q loss mutation analysis"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               83               287 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               83               287 
[1] "7p loss mutation analysis"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               11               359 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               11               359 
[1] "7q loss mutation analysis"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               12               358 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               12               358 
[1] "8p loss mutation analysis"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               97               273 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               97               273 
[1] "8q loss mutation analysis"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               11               359 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               11               359 
[1] "9p loss mutation analysis"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              113               257 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              113               257 
[1] "9q loss mutation analysis"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               96               274 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               96               274 
[1] "10p loss mutation analysis"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                26                344 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                26                344 
[1] "10q loss mutation analysis"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                30                340 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                30                340 
[1] "11p loss mutation analysis"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                27                343 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                27                343 
[1] "11q loss mutation analysis"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                24                346 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                24                346 
[1] "12p loss mutation analysis"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                32                338 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                32                338 
[1] "12q loss mutation analysis"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                21                349 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                21                349 
[1] "13q loss mutation analysis"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                85                285 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                85                285 
[1] "14q loss mutation analysis"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                41                329 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                41                329 
[1] "15q loss mutation analysis"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                77                293 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                77                293 
[1] "16p loss mutation analysis"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                30                340 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                30                340 
[1] "16q loss mutation analysis"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                49                321 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                49                321 
[1] "17p loss mutation analysis"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                94                276 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                94                276 
[1] "17q loss mutation analysis"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                16                354 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                16                354 
[1] "18p loss mutation analysis"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                65                305 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                65                305 
[1] "18q loss mutation analysis"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                93                277 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                93                277 
[1] "19p loss mutation analysis"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                98                272 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                98                272 
[1] "19q loss mutation analysis"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                56                314 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                56                314 
[1] "20p loss mutation analysis"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                50                320 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                50                320 
[1] "20q loss mutation analysis"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                21                349 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                21                349 
[1] "21q loss mutation analysis"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                52                318 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                52                318 
[1] "22q loss mutation analysis"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                77                293 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                77                293 
[1] "Xq loss mutation analysis"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               10               360 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               10               360 
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "TUMORSTAGE"                            
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NUMBERPACKYEARSSMOKED"                 
[18] "TOBACCOSMOKINGHISTORYINDICATOR"        
[19] "YEAROFTOBACCOSMOKINGONSET"             
[20] "COMPLETENESS.OF.RESECTION"             
[21] "BATCHNUMBER"                           

Input Data has 21 rows and 370 columns.

[1] "Batch" "21"   
[1] "Last Follow UP"
TCGA-05-4244 TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 
          NA         1158          121          606          426           NA 
TCGA-05-4390 TCGA-05-4395 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
        1126           NA          303           NA         1431           NA 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4410 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
          NA          610           NA           90          454           NA 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
         911           NA          913           NA          791          791 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
         761          761          730          457           31          151 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
          90           NA           30           62           14          224 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
         181          264         1448         2595         1147         1491 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
         863         1073          354         1357          158           NA 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
         133          574          581          400          529          103 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
         480          400           97          246          311          253 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
         196          189          140          106          498          208 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
           9          102          302          236           95          165 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
          82         1938           NA         1110           NA          298 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
         162          153           50          557           NA          531 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 
         535          418          259           98         2318           NA 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
          NA           NA         1081         1421          428          999 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
         268          896           NA         1314          457          369 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-49-6767 TCGA-50-5044 TCGA-50-5045 
         395          150            1           NA           NA         2174 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
        1485          455          785          297         1499          245 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
         282          267         1091         2369          653          257 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
         460          285          135          373          349           NA 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
          NA           NA           NA           NA           NA         1015 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
          NA          255         1068          970          418          701 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
        1178         1479         1374           87            2          992 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
          24           NA         1238           NA           28         1475 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
          NA           NA           NA           67           NA           NA 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
        1826           NA         1233         2161         1170           18 
TCGA-55-7283 TCGA-55-7570 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
          34           NA            4           95           40           39 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
          31           31           24           54           19           16 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
         197           21            3           21           92            6 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
          26            4           15          215           43          227 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 
           9            3          146          212           15           48 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
          49           65          105           33           31           29 
TCGA-55-A490 TCGA-55-A491 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
          48           NA            1           28            5          161 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 
        2093           NA           NA           NA          540         1728 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
         628         1189         1685         1126           NA         2550 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
           3          926          507         1202          223           30 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-4679 TCGA-67-6215 
          60           18           62           18           NA           27 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
          21          422          154          186          690          414 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
         129          230          184           70           89          382 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
          99           76          128           61         1599          711 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
         911          617          467           14           40          122 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-75-5122 TCGA-75-5125 TCGA-75-5126 
          38          621          519           NA           NA           NA 
TCGA-75-5146 TCGA-75-5147 TCGA-75-6203 TCGA-75-6205 TCGA-75-6206 TCGA-75-6207 
          NA           NA           NA           NA           NA           NA 
TCGA-75-6211 TCGA-75-6212 TCGA-75-6214 TCGA-75-7025 TCGA-75-7027 TCGA-75-7030 
          NA           NA           NA           NA           NA           NA 
TCGA-75-7031 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
          NA           NA           NA           NA           NA           NA 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
        1093           NA         1201          760           NA           NA 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
          NA           NA         1220          678          214           NA 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
        6812           NA           NA           NA           NA           NA 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-80-5607 
          NA          327          881           NA          994           NA 
TCGA-80-5608 TCGA-80-5611 TCGA-83-5908 TCGA-86-6562 TCGA-86-6851 TCGA-86-7701 
          NA           NA          420           NA           NA           11 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7714 TCGA-86-7953 TCGA-86-7954 TCGA-86-8054 
          27            7           NA           34           NA           19 
TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
          10           24           43           26           23           21 
TCGA-86-8280 TCGA-86-8281 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-8673 
          16           NA           34           44           17           NA 
TCGA-86-8674 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
          NA           39           37           NA            1           39 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
          35           11           NA          819          127           28 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
          31          297          127          185           34            2 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 
         163           21           40          132          963         1435 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
        1476         1331          263          181           NA           22 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 
         181           NA          146           15          250          427 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
         458           44          169          153          113          287 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
         282          238          212           76 
Variable 1:'AGE':	nDistinctValues=47,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=84,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=221,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=21,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=72,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBERPACKYEARSSMOKED':	nDistinctValues=86,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'TOBACCOSMOKINGHISTORYINDICATOR':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=53,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 21:'BATCH.NUMBER':	nDistinctValues=19,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "KARNOFSKY.PERFORMANCE.SCORE"           
 [4] "HISTOLOGICAL.TYPE"                     
 [5] "PATHOLOGY.T"                           
 [6] "PATHOLOGY.N"                           
 [7] "PATHOLOGICSPREAD(M)"                   
 [8] "TUMOR.STAGE"                           
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NUMBERPACKYEARSSMOKED"                 
[11] "TOBACCOSMOKINGHISTORYINDICATOR"        
[12] "YEAROFTOBACCOSMOKINGONSET"             
[13] "COMPLETENESS.OF.RESECTION"             
[1] "TUMOR.?STAGE" "8"           
[1] "stage2"
vv
  1   2   3   4 
198  81  65  20 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 370 columns, 1 survival variables, and 13 non-survival variables.
AGE, nv=47, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=6, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=11, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
113 208  30  17 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
113 208  30  17 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
113 208  30  17 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
113 208  30  17 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
232  71  56   2 
[1] "table(vv)"
vv
   N0    N1 N2+N3 
  232    71    58 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2  N3 
232  71  56   2 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


   N0    N1 N2+N3 
  232    71    58 
PATHOLOGICSPREAD(M), nv=4, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE$',vnm)"
vv
  I  II III  IV 
198  81  65  20 
[1] "table(vv)"
vv
  I  II III  IV 
198  81  65  20 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
198  81  65  20 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
198  81  65  20 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=86, binary=FALSE, numeric=TRUE
TOBACCOSMOKINGHISTORYINDICATOR, nv=4, binary=FALSE, numeric=FALSE
YEAROFTOBACCOSMOKINGONSET, nv=53, binary=FALSE, numeric=TRUE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain mutation analysis
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN MUTATED    33  12
  1P GAIN WILD-TYPE 213  73
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               45               286 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               12                73 
$`1P GAIN MUTATED`
TCGA-05-4420 TCGA-05-4424 TCGA-05-4432 TCGA-05-5423 TCGA-05-5429 TCGA-38-4632 
       29.95        30.02        25.02         4.96         0.99        44.61 
TCGA-44-2655 TCGA-44-2659 TCGA-44-6775 TCGA-44-6779 TCGA-44-7669 TCGA-44-7672 
       18.87        17.39         2.70        16.41        18.87        13.74 
TCGA-49-4501 TCGA-50-5944 TCGA-50-6591 TCGA-55-1592 TCGA-55-6980 TCGA-55-6983 
       46.72        12.26         3.88        23.05         2.20        60.03 
TCGA-55-7281 TCGA-55-7573 TCGA-55-8514 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 
        0.59         0.13         6.97         0.16         5.29        68.81 
TCGA-62-A46O TCGA-64-1676 TCGA-64-1681 TCGA-67-6217 TCGA-69-7980 TCGA-69-8253 
       47.77        56.81        44.38        13.87        12.56         3.25 
TCGA-71-6725 TCGA-73-4668 TCGA-73-4676 TCGA-78-7145 TCGA-78-7147 TCGA-78-7155 
        2.01        15.35         4.01        27.16        19.27        38.50 
TCGA-78-7161 TCGA-78-7535 TCGA-78-7633 TCGA-86-8074 TCGA-86-8279 TCGA-86-8280 
        7.04        31.20        32.68         0.79         0.69         0.53 
TCGA-86-8585 TCGA-91-6847 TCGA-95-7039 
        1.12        26.93         1.12 

$`1P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
        8.98        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5425 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        1.02         2.96         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2656 
       35.28        11.64         5.19        26.30         4.37        19.10 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       13.15         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 
        3.12         5.42        63.72        32.45        36.49         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 
        5.33         5.03         1.64        18.31        17.46        17.59 
TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        8.52         3.22        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       35.54        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 
       21.47         8.45        15.12         9.37         4.44        11.47 
TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       42.31        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1594 
        0.72         8.38        35.11        31.89        13.74        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-6984 TCGA-55-6985 
        5.46         7.76        45.34        32.71        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
       71.05        38.47         1.12         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.02         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        6.48         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.85         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
        0.30         0.10         4.80         0.49         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 
        2.14         3.45         1.08         1.02         0.95         1.58 
TCGA-55-A492 TCGA-55-A493 TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1677 
        0.03         0.92        19.53        39.22        17.75        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       39.09        55.40        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7760 TCGA-69-7761 
        2.04         0.59         0.89         0.69         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
       22.68        13.61         4.24         7.56         6.05         2.30 
TCGA-69-7979 TCGA-69-8254 TCGA-69-8255 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.93         2.50         4.21        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
       20.28         0.46         1.32         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
      163.10         5.65        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       24.99        19.50        32.09         5.88        40.11        22.29 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 
      104.15       223.96         8.48        88.11        26.53         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-83-5908 TCGA-86-7701 
       53.33        10.75        28.96        10.55        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8075 
        0.89         0.23         1.12         0.62         0.33         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 
        0.85         0.76         1.45         0.56         1.28         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 
       41.33         0.03         1.28         1.15         0.36         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7043 
        0.92         1.02         9.76         4.18         6.08         0.07 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 
        5.36         0.69         1.32         4.34        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 
        5.95         5.36         4.80         0.49         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        9.27         7.82         6.97         2.50 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             0.13              0.03 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            68.81            223.96 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            13.87              8.27 
[1] "0.1 - 68.8 (13.9)" "0.0 - 224.0 (8.3)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED     27   22
  1P GAIN WILD-TYPE  176  145
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  FEMALE              27               176
  MALE                22               145
D1V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  1P GAIN MUTATED                            1
  1P GAIN WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  1P GAIN MUTATED                                   9
  1P GAIN WILD-TYPE                                69
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1P GAIN MUTATED                                                   30
  1P GAIN WILD-TYPE                                                198
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  1P GAIN MUTATED                                            0
  1P GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  1P GAIN MUTATED                                               3
  1P GAIN WILD-TYPE                                            13
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  1P GAIN MUTATED                                0
  1P GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  1P GAIN MUTATED                                    1
  1P GAIN WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  1P GAIN MUTATED                              0                             3
  1P GAIN WILD-TYPE                            2                            13
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  1P GAIN MUTATED                                               1
  1P GAIN WILD-TYPE                                             2
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  1P GAIN MUTATED                                   1
  1P GAIN WILD-TYPE                                 6
D1V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  1P GAIN MUTATED    16  28   4   1
  1P GAIN WILD-TYPE  97 180  26  16
D1V6, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  T1              16                97
  T2              28               180
  T3               4                26
  T4               1                16
                   vv
clus                 N0  N1 N2+N3
  1P GAIN MUTATED    31  16     2
  1P GAIN WILD-TYPE 201  55    56
D1V7, multiclass
       clus
vv      1P GAIN MUTATED 1P GAIN WILD-TYPE
  N0                 31               201
  N1                 16                55
  N2+N3               2                56
                   vv
clus                 M0  M1 M1B  MX
  1P GAIN MUTATED    34   3   0  11
  1P GAIN WILD-TYPE 213  14   3  84
D1V8, multiclass
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  M0               34               213
  M1                3                14
  M1B               0                 3
  MX               11                84
                   vv
clus                  I  II III  IV
  1P GAIN MUTATED    25  18   2   3
  1P GAIN WILD-TYPE 173  63  63  17
D1V9, multiclass
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  I                25               173
  II               18                63
  III               2                63
  IV                3                17
D1V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      1   48
  1P GAIN WILD-TYPE   19  302
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO                1                19
  YES              48               302
D1V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  1P GAIN MUTATED                                            19
  1P GAIN WILD-TYPE                                         106
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  1P GAIN MUTATED                                        9             12
  1P GAIN WILD-TYPE                                     85             72
                   vv
clus                LIFELONG NON-SMOKER
  1P GAIN MUTATED                     8
  1P GAIN WILD-TYPE                  46
D1V12, multiclass
                                             clus
vv                                            1P GAIN MUTATED 1P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              19               106
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    9                85
  CURRENT SMOKER                                           12                72
  LIFELONG NON-SMOKER                                       8                46
D1V13, continuous
                   vv
clus                 R0  R1  R2  RX
  1P GAIN MUTATED    31   3   0   2
  1P GAIN WILD-TYPE 187   6   4  11
D1V14, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  R0              31               187
  R1               3                 6
  R2               0                 4
  RX               2                11

Clustering(2) Variable = 1q gain mutation analysis
D2V1, survival
                   sevent
clus2                 0   1
  1Q GAIN MUTATED   100  31
  1Q GAIN WILD-TYPE 146  54
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              131               200 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               31                54 
$`1Q GAIN MUTATED`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4415 TCGA-05-4424 TCGA-05-4430 TCGA-05-4432 
       38.07        14.01         2.96        30.02        25.02        25.02 
TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-38-4625 TCGA-38-4629 
        4.96         0.99         2.04         0.46        47.61        28.37 
TCGA-38-4632 TCGA-38-7271 TCGA-44-2655 TCGA-44-2659 TCGA-44-2668 TCGA-44-5645 
       44.61        26.30        18.87        17.39         8.09         6.84 
TCGA-44-6147 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        7.76         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7662 TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
        9.80         1.64        18.87        17.59        13.74         8.52 
TCGA-49-4486 TCGA-49-4488 TCGA-49-4501 TCGA-49-4506 TCGA-49-6742 TCGA-49-6743 
       76.21        28.57        46.72        32.84        15.02        12.13 
TCGA-50-5931 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-53-7813 TCGA-55-1592 
        8.78        12.26        11.47         3.88        13.74        23.05 
TCGA-55-6642 TCGA-55-6970 TCGA-55-6972 TCGA-55-6980 TCGA-55-6983 TCGA-55-6984 
       32.61        15.25        48.49         2.20        60.03        24.99 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7815 
        0.59         1.12         0.13         3.12         1.28         1.78 
TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8092 
        0.62         6.48         0.69         0.10         0.69         0.85 
TCGA-55-8094 TCGA-55-8301 TCGA-55-8510 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 
        0.13         1.41         7.46         6.97         0.49         1.58 
TCGA-55-A48Z TCGA-55-A492 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O 
        0.95         0.03         0.16         5.29        68.81        47.77 
TCGA-62-A46P TCGA-62-A470 TCGA-64-1676 TCGA-64-1680 TCGA-64-1681 TCGA-67-3771 
       19.53        39.22        56.81        37.02        44.38         1.97 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 TCGA-69-7760 TCGA-69-7764 TCGA-69-7765 
        0.59         0.89        13.87         5.06        13.61         4.24 
TCGA-69-7973 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-71-6725 TCGA-73-4658 
        7.56         2.93        12.56         3.25         2.01        52.57 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        15.35         0.46         1.32         4.01         1.25 
TCGA-73-7498 TCGA-78-7145 TCGA-78-7147 TCGA-78-7149 TCGA-78-7150 TCGA-78-7156 
       20.42        27.16        19.27        35.93        21.86        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7161 TCGA-78-7167 TCGA-78-7535 TCGA-78-7537 
        5.88        40.11         7.04        88.11        31.20        53.33 
TCGA-78-7539 TCGA-78-7633 TCGA-86-8054 TCGA-86-8074 TCGA-86-8076 TCGA-86-8279 
       10.75        32.68         0.62         0.79         0.85         0.69 
TCGA-86-8280 TCGA-86-8585 TCGA-91-6828 TCGA-91-6847 TCGA-91-6849 TCGA-95-7039 
        0.53         1.12         1.22        26.93         0.92         1.12 
TCGA-95-7567 TCGA-95-7947 TCGA-97-7547 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
        5.36         1.32        47.18         8.65         5.95         0.59 
TCGA-97-8179 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8194 TCGA-J2-A4AD 
        0.49         1.45         5.56         3.72         9.44 

$`1Q GAIN WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        19.92        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 
        8.02        20.05        14.93         8.98        29.95        26.01 
TCGA-05-4427 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-35-4122 
       26.01        24.00        15.02         1.02         2.96         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 
        5.95         8.68        85.32        37.71        49.02        35.28 
TCGA-38-4631 TCGA-38-6178 TCGA-38-A44F TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       11.64         5.19         4.37        19.10        13.15         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78        13.15         3.19        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48        16.37         0.30         3.35 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-7660 TCGA-44-7661 TCGA-44-7667 
        9.93         3.12         5.42         5.33         5.03        18.31 
TCGA-44-7670 TCGA-44-8119 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 
       17.46         3.22        28.11        12.66        35.54        14.07 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6744 TCGA-49-6745 
        8.81        29.46        29.75        43.20        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-6590 
       21.47         8.45        15.12         9.37         4.44        42.31 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
        8.38        35.11        31.89        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 
        2.86         0.07         0.79        42.48        40.70         0.92 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-6985 
        3.88         5.46         7.76        45.34        32.71        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7576 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
       71.05        38.47         1.32         1.02         1.02         0.79 
TCGA-55-7907 TCGA-55-8089 TCGA-55-8090 TCGA-55-8097 TCGA-55-8299 TCGA-55-8511 
        0.53         3.02         0.20         0.49         7.07         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        0.10         4.80         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A490 TCGA-55-A493 TCGA-62-A472 TCGA-64-1677 TCGA-64-1678 
        1.02         1.58         0.92        17.75        20.65        39.09 
TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       55.40        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-6216 TCGA-69-7761 
        7.33         0.99         0.59         2.04         0.69         6.12 
TCGA-69-7763 TCGA-69-7974 TCGA-69-7978 TCGA-69-8254 TCGA-69-8255 TCGA-73-4659 
       22.68         6.05         2.30         2.50         4.21        23.38 
TCGA-73-4666 TCGA-73-7499 TCGA-78-7143 TCGA-78-7146 TCGA-78-7148 TCGA-78-7152 
       20.28        17.06       163.10         5.65        20.58        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 
       24.99        19.50        38.50        22.29       104.15       223.96 
TCGA-78-7166 TCGA-78-7220 TCGA-78-7536 TCGA-78-7540 TCGA-78-7542 TCGA-83-5908 
        8.48        26.53         8.02        28.96        10.55        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8055 TCGA-86-8075 
        0.36         0.89         0.23         1.12         0.33         1.41 
TCGA-86-8278 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6829 TCGA-91-6830 
        0.76         1.45         0.56         1.28        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-7771 TCGA-93-7347 
        1.28         1.15         0.36         4.18         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7043 TCGA-95-7944 TCGA-95-7948 TCGA-97-7546 
        4.18         6.08         0.07         0.69         4.34        31.66 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 
       48.53        43.76         0.72         5.95         5.36         4.80 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-J2-8192 TCGA-J2-A4AE TCGA-J2-A4AG 
        8.22        14.04        15.06         5.03         9.27         7.82 
TCGA-L4-A4E5 TCGA-L4-A4E6 
        6.97         2.50 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             0.03              0.03 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            88.11            223.96 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             8.09              8.58 
[1] "0.0 - 88.1 (8.1)"  "0.0 - 224.0 (8.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     76   70
  1Q GAIN WILD-TYPE  127   97
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  FEMALE              76               127
  MALE                70                97
D2V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  1Q GAIN MUTATED                            6
  1Q GAIN WILD-TYPE                          5
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  1Q GAIN MUTATED                                  32
  1Q GAIN WILD-TYPE                                46
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1Q GAIN MUTATED                                                   83
  1Q GAIN WILD-TYPE                                                145
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  1Q GAIN MUTATED                                            0
  1Q GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  1Q GAIN MUTATED                                               8
  1Q GAIN WILD-TYPE                                             8
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  1Q GAIN MUTATED                                1
  1Q GAIN WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  1Q GAIN MUTATED                                    2
  1Q GAIN WILD-TYPE                                  1
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  1Q GAIN MUTATED                              0                            10
  1Q GAIN WILD-TYPE                            2                             6
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  1Q GAIN MUTATED                                               2
  1Q GAIN WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  1Q GAIN MUTATED                                   2
  1Q GAIN WILD-TYPE                                 5
D2V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  1Q GAIN MUTATED    46  77  12   9
  1Q GAIN WILD-TYPE  67 131  18   8
D2V6, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  T1              46                67
  T2              77               131
  T3              12                18
  T4               9                 8
                   vv
clus                 N0  N1 N2+N3
  1Q GAIN MUTATED    99  27    14
  1Q GAIN WILD-TYPE 133  44    44
D2V7, multiclass
       clus
vv      1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  N0                 99               133
  N1                 27                44
  N2+N3              14                44
                   vv
clus                 M0  M1 M1B  MX
  1Q GAIN MUTATED    90   8   1  44
  1Q GAIN WILD-TYPE 157   9   2  51
D2V8, multiclass
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  M0               90               157
  M1                8                 9
  M1B               1                 2
  MX               44                51
                   vv
clus                  I  II III  IV
  1Q GAIN MUTATED    86  32  16  10
  1Q GAIN WILD-TYPE 112  49  49  10
D2V9, multiclass
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  I                86               112
  II               32                49
  III              16                49
  IV               10                10
D2V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED      5  141
  1Q GAIN WILD-TYPE   15  209
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO                5                15
  YES             141               209
D2V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  1Q GAIN MUTATED                                            52
  1Q GAIN WILD-TYPE                                          73
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  1Q GAIN MUTATED                                       43             30
  1Q GAIN WILD-TYPE                                     51             54
                   vv
clus                LIFELONG NON-SMOKER
  1Q GAIN MUTATED                    18
  1Q GAIN WILD-TYPE                  36
D2V12, multiclass
                                             clus
vv                                            1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              52                73
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   43                51
  CURRENT SMOKER                                           30                54
  LIFELONG NON-SMOKER                                      18                36
D2V13, continuous
                   vv
clus                 R0  R1  R2  RX
  1Q GAIN MUTATED    86   6   0   6
  1Q GAIN WILD-TYPE 132   3   4   7
D2V14, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  R0              86               132
  R1               6                 3
  R2               0                 4
  RX               6                 7

Clustering(3) Variable = 2p gain mutation analysis
D3V1, survival
                   sevent
clus2                 0   1
  2P GAIN MUTATED    27   9
  2P GAIN WILD-TYPE 219  76
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               36               295 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                9                76 
$`2P GAIN MUTATED`
TCGA-05-4420 TCGA-38-4630 TCGA-38-4632 TCGA-44-7670 TCGA-50-5946 TCGA-53-7624 
       29.95        35.28        44.61        17.46        11.47        35.11 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-6970 TCGA-55-7907 TCGA-55-7910 
       23.05        38.73        48.62        15.25         0.53         6.48 
TCGA-55-A494 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-69-7764 TCGA-69-7973 
        0.16        39.09        37.02        83.84        13.61         7.56 
TCGA-69-7980 TCGA-73-4675 TCGA-73-4676 TCGA-78-7145 TCGA-78-7149 TCGA-78-7150 
       12.56         1.32         4.01        27.16        35.93        21.86 
TCGA-78-7155 TCGA-78-7163 TCGA-78-7220 TCGA-78-7539 TCGA-78-7633 TCGA-86-7711 
       38.50       223.96        26.53        10.75        32.68         0.89 
TCGA-86-8054 TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 TCGA-97-7547 TCGA-97-8179 
        0.62        41.33         1.28         0.36        47.18         0.49 

$`2P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-6178 
       85.32        37.71        49.02        28.37        11.64         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 
       17.59        13.74         8.52         3.22        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       31.89        13.74        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
        0.79        42.48        40.70         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.13         3.12         1.32         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 
        0.79         1.78         0.62         0.69         0.10         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 
        3.02         0.20         0.85         0.13         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 
        1.41         7.46         0.30         0.10         4.80         6.97 
TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        0.49         1.58         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DG 
        1.02         0.95         1.58         0.03         0.92         5.29 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 
       68.81        47.77        19.53        39.22        17.75        56.81 
TCGA-64-1677 TCGA-64-1679 TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       20.65        55.40        44.38         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 
       22.68         4.24         6.05         2.30         2.93         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
       20.28        15.35         0.46         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7152 TCGA-78-7153 
      163.10         5.65        19.27        20.58        39.48        24.99 
TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       19.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
      104.15         8.48        88.11        31.20         8.02        53.33 
TCGA-78-7540 TCGA-78-7542 TCGA-83-5908 TCGA-86-7701 TCGA-86-7713 TCGA-86-7953 
       28.96        10.55        13.81         0.36         0.23         1.12 
TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        0.33         0.79         1.41         0.85         0.76         0.69 
TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 
        0.53         1.12         1.45         0.56         1.28         1.22 
TCGA-91-6830 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        0.03         1.15        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        9.76         4.18         6.08         1.12         0.07         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 
        0.69         1.32         4.34        31.66        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 
        8.65         5.95         0.59         0.72         5.95         5.36 
TCGA-97-8177 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        4.80         8.22        14.04        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        5.03         3.72         9.44         9.27         7.82         6.97 
TCGA-L4-A4E6 
        2.50 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             0.16              0.03 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           223.96            163.10 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           22.455             8.020 
[1] "0.2 - 224.0 (22.5)" "0.0 - 163.1 (8.0)" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     17   26
  2P GAIN WILD-TYPE  186  141
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  FEMALE              17               186
  MALE                26               141
D3V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  2P GAIN MUTATED                            2
  2P GAIN WILD-TYPE                          9
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  2P GAIN MUTATED                                  11
  2P GAIN WILD-TYPE                                67
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2P GAIN MUTATED                                                   24
  2P GAIN WILD-TYPE                                                204
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  2P GAIN MUTATED                                            0
  2P GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  2P GAIN MUTATED                                               2
  2P GAIN WILD-TYPE                                            14
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  2P GAIN MUTATED                                1
  2P GAIN WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  2P GAIN MUTATED                                    0
  2P GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  2P GAIN MUTATED                              0                             3
  2P GAIN WILD-TYPE                            2                            13
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  2P GAIN MUTATED                                               0
  2P GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  2P GAIN MUTATED                                   0
  2P GAIN WILD-TYPE                                 7
D3V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  2P GAIN MUTATED     8  30   1   4
  2P GAIN WILD-TYPE 105 178  29  13
D3V6, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  T1               8               105
  T2              30               178
  T3               1                29
  T4               4                13
                   vv
clus                 N0  N1 N2+N3
  2P GAIN MUTATED    26  10     7
  2P GAIN WILD-TYPE 206  61    51
D3V7, multiclass
       clus
vv      2P GAIN MUTATED 2P GAIN WILD-TYPE
  N0                 26               206
  N1                 10                61
  N2+N3               7                51
                   vv
clus                 M0  M1 M1B  MX
  2P GAIN MUTATED    29   5   0   8
  2P GAIN WILD-TYPE 218  12   3  87
D3V8, multiclass
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  M0               29               218
  M1                5                12
  M1B               0                 3
  MX                8                87
                   vv
clus                  I  II III  IV
  2P GAIN MUTATED    21   9   8   5
  2P GAIN WILD-TYPE 177  72  57  15
D3V9, multiclass
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  I                21               177
  II                9                72
  III               8                57
  IV                5                15
D3V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      2   41
  2P GAIN WILD-TYPE   18  309
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO                2                18
  YES              41               309
D3V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  2P GAIN MUTATED                                            18
  2P GAIN WILD-TYPE                                         107
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  2P GAIN MUTATED                                        9             14
  2P GAIN WILD-TYPE                                     85             70
                   vv
clus                LIFELONG NON-SMOKER
  2P GAIN MUTATED                     2
  2P GAIN WILD-TYPE                  52
D3V12, multiclass
                                             clus
vv                                            2P GAIN MUTATED 2P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              18               107
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    9                85
  CURRENT SMOKER                                           14                70
  LIFELONG NON-SMOKER                                       2                52
D3V13, continuous
                   vv
clus                 R0  R1  R2  RX
  2P GAIN MUTATED    27   2   0   2
  2P GAIN WILD-TYPE 191   7   4  11
D3V14, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  R0              27               191
  R1               2                 7
  R2               0                 4
  RX               2                11

Clustering(4) Variable = 2q gain mutation analysis
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN MUTATED    22   8
  2Q GAIN WILD-TYPE 224  77
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               30               301 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                8                77 
$`2Q GAIN MUTATED`
TCGA-35-5375 TCGA-38-4630 TCGA-38-4632 TCGA-44-7670 TCGA-53-7624 TCGA-55-1592 
        8.68        35.28        44.61        17.46        35.11        23.05 
TCGA-55-1594 TCGA-55-6970 TCGA-55-7907 TCGA-55-7910 TCGA-55-8514 TCGA-55-8620 
       38.73        15.25         0.53         6.48         6.97         2.14 
TCGA-55-A494 TCGA-64-1680 TCGA-67-3771 TCGA-69-7764 TCGA-69-7973 TCGA-69-7980 
        0.16        37.02         1.97        13.61         7.56        12.56 
TCGA-73-4675 TCGA-78-7149 TCGA-78-7150 TCGA-78-7155 TCGA-78-7163 TCGA-78-7167 
        1.32        35.93        21.86        38.50       223.96        88.11 
TCGA-78-7220 TCGA-78-7539 TCGA-78-7633 TCGA-91-6836 TCGA-97-7547 TCGA-97-8179 
       26.53        10.75        32.68         0.36        47.18         0.49 

$`2Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-6178 
       85.32        37.71        49.02        28.37        11.64         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 
       17.59        13.74         8.52         3.22        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        8.38        31.89        13.74        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 
        0.07        32.61         0.79        42.48        40.70         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7911 
        1.02         1.02         0.79         1.78         0.62         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 
        0.10         0.69         3.02         0.20         0.85         0.13 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X 
        4.80         0.49         1.58         1.61         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DG 
        1.02         0.95         1.58         0.03         0.92         5.29 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 
       68.81        47.77        19.53        39.22        17.75        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       20.65        39.09        55.40        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       30.44        16.67        39.52         7.33         0.99         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        2.04         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
        6.12        22.68         4.24         6.05         2.30         2.93 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        3.25         2.50         4.21         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         0.46         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
       20.42        17.06       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 
       20.58        39.48        24.99        19.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7535 
       40.11        22.29         7.04       104.15         8.48        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-83-5908 TCGA-86-7701 
        8.02        53.33        28.96        10.55        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 
        0.89         0.23         1.12         0.62         0.33         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 
        1.41         0.85         0.76         0.69         0.53         1.12 
TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        1.45         0.56         1.28         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.28         1.15        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        9.76         4.18         6.08         1.12         0.07         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 
        0.69         1.32         4.34        31.66        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 
        8.65         5.95         0.59         0.72         5.95         5.36 
TCGA-97-8177 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        4.80         8.22        14.04        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        5.03         3.72         9.44         9.27         7.82         6.97 
TCGA-L4-A4E6 
        2.50 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             0.16              0.03 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           223.96            163.10 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           16.355             8.090 
[1] "0.2 - 224.0 (16.4)" "0.0 - 163.1 (8.1)" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED     17   20
  2Q GAIN WILD-TYPE  186  147
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  FEMALE              17               186
  MALE                20               147
D4V4, continuous
[1] "Remove cluster labels:" "2Q GAIN MUTATED"       
clus
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                2                26 
       TCGA-35-4122        TCGA-35-4123        TCGA-55-7283        TCGA-55-7573 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7914        TCGA-64-1677        TCGA-64-1681 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5778        TCGA-69-7974        TCGA-71-6725        TCGA-73-4659 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4676 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-75-5122        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7714        TCGA-86-7954        TCGA-91-6849 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-93-7348        TCGA-99-7458 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  2Q GAIN MUTATED                            1
  2Q GAIN WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  2Q GAIN MUTATED                                   8
  2Q GAIN WILD-TYPE                                70
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2Q GAIN MUTATED                                                   23
  2Q GAIN WILD-TYPE                                                205
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  2Q GAIN MUTATED                                            0
  2Q GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  2Q GAIN MUTATED                                               1
  2Q GAIN WILD-TYPE                                            15
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  2Q GAIN MUTATED                                0
  2Q GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  2Q GAIN MUTATED                                    0
  2Q GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  2Q GAIN MUTATED                              0                             4
  2Q GAIN WILD-TYPE                            2                            12
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  2Q GAIN MUTATED                                               0
  2Q GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  2Q GAIN MUTATED                                   0
  2Q GAIN WILD-TYPE                                 7
D4V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  2Q GAIN MUTATED     8  27   1   1
  2Q GAIN WILD-TYPE 105 181  29  16
D4V6, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  T1               8               105
  T2              27               181
  T3               1                29
  T4               1                16
                   vv
clus                 N0  N1 N2+N3
  2Q GAIN MUTATED    24   7     6
  2Q GAIN WILD-TYPE 208  64    52
D4V7, multiclass
       clus
vv      2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  N0                 24               208
  N1                  7                64
  N2+N3               6                52
                   vv
clus                 M0  M1 M1B  MX
  2Q GAIN MUTATED    25   4   1   6
  2Q GAIN WILD-TYPE 222  13   2  89
D4V8, multiclass
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  M0               25               222
  M1                4                13
  M1B               1                 2
  MX                6                89
                   vv
clus                  I  II III  IV
  2Q GAIN MUTATED    19   6   7   5
  2Q GAIN WILD-TYPE 179  75  58  15
D4V9, multiclass
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  I                19               179
  II                6                75
  III               7                58
  IV                5                15
D4V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      1   36
  2Q GAIN WILD-TYPE   19  314
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO                1                19
  YES              36               314
D4V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  2Q GAIN MUTATED                                            15
  2Q GAIN WILD-TYPE                                         110
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  2Q GAIN MUTATED                                       10             11
  2Q GAIN WILD-TYPE                                     84             73
                   vv
clus                LIFELONG NON-SMOKER
  2Q GAIN MUTATED                     1
  2Q GAIN WILD-TYPE                  53
D4V12, multiclass
                                             clus
vv                                            2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              15               110
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   10                84
  CURRENT SMOKER                                           11                73
  LIFELONG NON-SMOKER                                       1                53
D4V13, continuous
                   vv
clus                 R0  R1  R2  RX
  2Q GAIN MUTATED    27   1   0   1
  2Q GAIN WILD-TYPE 191   8   4  12
D4V14, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  R0              27               191
  R1               1                 8
  R2               0                 4
  RX               1                12

Clustering(5) Variable = 3p gain mutation analysis
D5V1, survival
                   sevent
clus2                 0   1
  3P GAIN MUTATED     6   4
  3P GAIN WILD-TYPE 240  81
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               10               321 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                4                81 
$`3P GAIN MUTATED`
TCGA-05-4427 TCGA-35-5375 TCGA-49-4487 TCGA-49-4488 TCGA-50-5946 TCGA-64-5775 
       26.01         8.68        28.11        28.57        11.47         0.10 
TCGA-69-7760 TCGA-73-4676 TCGA-78-7145 TCGA-86-8074 
        5.06         4.01        27.16         0.79 

$`3P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         5.95        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
        5.19        26.30         4.37        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        17.46        17.59        13.74         8.52         3.22 
TCGA-49-4486 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       76.21        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       35.11        31.89        13.74        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        3.12         1.32         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 
        0.69         3.02         0.20         0.85         0.13         0.49 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        7.07         1.41         7.46         0.30         0.10         4.80 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        6.97         0.49         1.58         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        1.08         1.02         0.95         1.58         0.03         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 
        0.16         5.29        68.81        47.77        19.53        39.22 
TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
       17.75        56.81        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       44.38        83.84        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        0.69        13.87         6.12        22.68        13.61         4.24 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 
        7.56         6.05         2.30         2.93        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-73-7498 
       20.28        15.35         0.46         1.32         1.25        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
       17.06       163.10         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8075 
        0.89         0.23         1.12         0.62         0.33         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 
        0.85         0.76         0.69         0.53         1.12         1.45 
TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.56         1.28         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.15         0.36        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        9.76         4.18         6.08         1.12         0.07         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.69         1.32         4.34        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 
       43.76         8.65         5.95         0.59         0.72         5.95 
TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        5.36         4.80         0.49         8.22        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        1.45         5.56         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        7.82         6.97         2.50 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             0.10              0.03 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            28.57            223.96 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           10.075             8.450 
[1] "0.1 - 28.6 (10.1)" "0.0 - 224.0 (8.4)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
[1] "hr=" "2.3"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      5    5
  3P GAIN WILD-TYPE  198  162
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  FEMALE               5               198
  MALE                 5               162
D5V4, continuous
[1] "Remove cluster labels:" "3P GAIN MUTATED"       
clus
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                2                26 
       TCGA-35-4122        TCGA-35-4123        TCGA-55-7283        TCGA-55-7573 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7910        TCGA-55-7914        TCGA-64-1677 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-69-7974        TCGA-71-6725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-75-5122        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7714        TCGA-86-7954        TCGA-91-6849 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-93-7348        TCGA-99-7458 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  3P GAIN MUTATED                            1
  3P GAIN WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  3P GAIN MUTATED                                   2
  3P GAIN WILD-TYPE                                76
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3P GAIN MUTATED                                                    6
  3P GAIN WILD-TYPE                                                222
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  3P GAIN MUTATED                                            0
  3P GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  3P GAIN MUTATED                                               0
  3P GAIN WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  3P GAIN MUTATED                                0
  3P GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  3P GAIN MUTATED                                    0
  3P GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  3P GAIN MUTATED                              0                             1
  3P GAIN WILD-TYPE                            2                            15
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  3P GAIN MUTATED                                               0
  3P GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  3P GAIN MUTATED                                   0
  3P GAIN WILD-TYPE                                 7
D5V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  3P GAIN MUTATED     4   3   1   2
  3P GAIN WILD-TYPE 109 205  29  15
D5V6, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  T1               4               109
  T2               3               205
  T3               1                29
  T4               2                15
                   vv
clus                 N0  N1 N2+N3
  3P GAIN MUTATED     5   4     1
  3P GAIN WILD-TYPE 227  67    57
D5V7, multiclass
       clus
vv      3P GAIN MUTATED 3P GAIN WILD-TYPE
  N0                  5               227
  N1                  4                67
  N2+N3               1                57
                   vv
clus                 M0  M1 M1B  MX
  3P GAIN MUTATED     7   1   0   2
  3P GAIN WILD-TYPE 240  16   3  93
D5V8, multiclass
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  M0                7               240
  M1                1                16
  M1B               0                 3
  MX                2                93
                   vv
clus                  I  II III  IV
  3P GAIN MUTATED     3   4   2   1
  3P GAIN WILD-TYPE 195  77  63  19
D5V9, multiclass
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  I                 3               195
  II                4                77
  III               2                63
  IV                1                19
D5V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      1    9
  3P GAIN WILD-TYPE   19  341
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO                1                19
  YES               9               341
D5V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  3P GAIN MUTATED                                             6
  3P GAIN WILD-TYPE                                         119
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  3P GAIN MUTATED                                        1              2
  3P GAIN WILD-TYPE                                     93             82
                   vv
clus                LIFELONG NON-SMOKER
  3P GAIN MUTATED                     1
  3P GAIN WILD-TYPE                  53
D5V12, multiclass
                                             clus
vv                                            3P GAIN MUTATED 3P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               6               119
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                93
  CURRENT SMOKER                                            2                82
  LIFELONG NON-SMOKER                                       1                53
D5V13, continuous
                   vv
clus                 R0  R1  R2  RX
  3P GAIN MUTATED     7   1   0   0
  3P GAIN WILD-TYPE 211   8   4  13
D5V14, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  R0               7               211
  R1               1                 8
  R2               0                 4
  RX               0                13

Clustering(6) Variable = 3q gain mutation analysis
D6V1, survival
                   sevent
clus2                 0   1
  3Q GAIN MUTATED    14   6
  3Q GAIN WILD-TYPE 232  79
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               20               311 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                6                79 
$`3Q GAIN MUTATED`
TCGA-05-4427 TCGA-05-5429 TCGA-35-5375 TCGA-44-5643 TCGA-44-7660 TCGA-44-7670 
       26.01         0.99         8.68         3.48         5.33        17.46 
TCGA-49-4487 TCGA-49-4488 TCGA-50-5931 TCGA-50-5946 TCGA-55-1594 TCGA-55-6984 
       28.11        28.57         8.78        11.47        38.73        24.99 
TCGA-55-A490 TCGA-69-7760 TCGA-69-7980 TCGA-73-4676 TCGA-78-7145 TCGA-78-7146 
        1.58         5.06        12.56         4.01        27.16         5.65 
TCGA-86-8074 TCGA-95-7947 
        0.79         1.32 

$`3Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5715 
       24.00        15.02         1.02         4.96         2.96         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 
        8.32         6.44         6.21         4.60        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 
        5.03         1.64        18.31        18.87        17.59        13.74 
TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
        8.52         3.22        76.21        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 
       15.12         9.37         4.44        12.26        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1595 
        8.38        35.11        31.89        13.74        23.05        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6985 
        7.76         2.20        45.34        32.71        60.03        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        1.32         1.28         1.02         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 
        0.62         0.53         6.48         0.69         0.10         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 
        3.02         0.20         0.85         0.13         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 
        1.41         7.46         0.30         0.10         4.80         6.97 
TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        0.49         1.58         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        1.02         0.95         0.03         0.92         0.16         5.29 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 
       68.81        47.77        19.53        39.22        17.75        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
       13.87         6.12        22.68        13.61         4.24         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        6.05         2.30         2.93         3.25         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        0.46         1.32         1.25        20.42        17.06       163.10 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
        7.04       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       31.20         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 
       32.68        13.81         0.36         0.89         0.23         1.12 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        0.62         0.33         1.41         0.85         0.76         0.69 
TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 
        0.53         1.12         1.45         0.56         1.28         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         0.03         1.28         1.15         0.36        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        4.18         0.92         1.02         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7948 TCGA-97-7546 
        1.12         0.07         5.36         0.69         4.34        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 
        0.72         5.95         5.36         4.80         0.49         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        9.44         9.27         7.82         6.97         2.50 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             0.79              0.03 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            38.73            223.96 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             8.73              8.45 
[1] "0.8 - 38.7 (8.7)"  "0.0 - 224.0 (8.4)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     11   12
  3Q GAIN WILD-TYPE  192  155
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  FEMALE              11               192
  MALE                12               155
D6V4, continuous
[1] "Remove cluster labels:" "3Q GAIN MUTATED"       
clus
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                2                26 
       TCGA-35-4122        TCGA-35-4123        TCGA-55-7283        TCGA-55-7573 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7910        TCGA-55-7914        TCGA-64-1677 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-69-7974        TCGA-71-6725 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-75-5122        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7714        TCGA-86-7954        TCGA-91-6849 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-93-7348        TCGA-99-7458 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  3Q GAIN MUTATED                            1
  3Q GAIN WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  3Q GAIN MUTATED                                   5
  3Q GAIN WILD-TYPE                                73
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3Q GAIN MUTATED                                                   15
  3Q GAIN WILD-TYPE                                                213
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  3Q GAIN MUTATED                                            0
  3Q GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  3Q GAIN MUTATED                                               1
  3Q GAIN WILD-TYPE                                            15
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  3Q GAIN MUTATED                                0
  3Q GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  3Q GAIN MUTATED                                    0
  3Q GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  3Q GAIN MUTATED                              0                             1
  3Q GAIN WILD-TYPE                            2                            15
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  3Q GAIN MUTATED                                               0
  3Q GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  3Q GAIN MUTATED                                   0
  3Q GAIN WILD-TYPE                                 7
D6V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  3Q GAIN MUTATED     9  11   2   1
  3Q GAIN WILD-TYPE 104 197  28  16
D6V6, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  T1               9               104
  T2              11               197
  T3               2                28
  T4               1                16
                   vv
clus                 N0  N1 N2+N3
  3Q GAIN MUTATED    12   6     5
  3Q GAIN WILD-TYPE 220  65    53
D6V7, multiclass
       clus
vv      3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  N0                 12               220
  N1                  6                65
  N2+N3               5                53
                   vv
clus                 M0  M1 M1B  MX
  3Q GAIN MUTATED    17   1   0   5
  3Q GAIN WILD-TYPE 230  16   3  90
D6V8, multiclass
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  M0               17               230
  M1                1                16
  M1B               0                 3
  MX                5                90
                   vv
clus                  I  II III  IV
  3Q GAIN MUTATED    10   7   5   1
  3Q GAIN WILD-TYPE 188  74  60  19
D6V9, multiclass
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  I                10               188
  II                7                74
  III               5                60
  IV                1                19
D6V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED      2   21
  3Q GAIN WILD-TYPE   18  329
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO                2                18
  YES              21               329
D6V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  3Q GAIN MUTATED                                             8
  3Q GAIN WILD-TYPE                                         117
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  3Q GAIN MUTATED                                        5              6
  3Q GAIN WILD-TYPE                                     89             78
                   vv
clus                LIFELONG NON-SMOKER
  3Q GAIN MUTATED                     2
  3Q GAIN WILD-TYPE                  52
D6V12, multiclass
                                             clus
vv                                            3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               8               117
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    5                89
  CURRENT SMOKER                                            6                78
  LIFELONG NON-SMOKER                                       2                52
D6V13, continuous
                   vv
clus                 R0  R1  R2  RX
  3Q GAIN MUTATED    14   1   0   0
  3Q GAIN WILD-TYPE 204   8   4  13
D6V14, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  R0              14               204
  R1               1                 8
  R2               0                 4
  RX               0                13

Clustering(7) Variable = 4p gain mutation analysis
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN MUTATED    14  10
  4P GAIN WILD-TYPE 232  75
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               24               307 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               10                75 
$`4P GAIN MUTATED`
TCGA-05-5423 TCGA-38-4629 TCGA-38-4631 TCGA-44-4112 TCGA-44-5645 TCGA-50-6594 
        4.96        28.37        11.64         4.60         6.84        12.16 
TCGA-50-7109 TCGA-53-7624 TCGA-55-1594 TCGA-55-8094 TCGA-55-A492 TCGA-62-A46O 
        8.38        35.11        38.73         0.13         0.03        47.77 
TCGA-64-1680 TCGA-64-1681 TCGA-69-7980 TCGA-78-7145 TCGA-78-7150 TCGA-78-7163 
       37.02        44.38        12.56        27.16        21.86       223.96 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7542 TCGA-86-8279 TCGA-91-6836 TCGA-97-8179 
       26.53        31.20        10.55         0.69         0.36         0.49 

$`4P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       85.32        37.71        49.02        35.28        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 
        8.32         6.44         6.21         3.48        16.37         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 
       63.72        32.45        36.49        16.41         9.80         5.33 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
        5.03         1.64        18.31        18.87        17.46        17.59 
TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       13.74         8.52         3.22        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7626 TCGA-53-7813 
       11.05         6.21        33.37         0.72        31.89        13.74 
TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.69         0.10         0.69         3.02         0.20         0.85 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A493 
        3.45         1.08         1.02         0.95         1.58         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 
        0.16         5.29        68.81        19.53        39.22        17.75 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 
       56.81        20.65        39.09        55.40        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
        5.06         6.12        22.68        13.61         4.24         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        6.05         2.30         2.93         3.25         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
        0.46         1.32         4.01         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 
      163.10         5.65        19.27        20.58        35.93        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7536 
       22.29         7.04       104.15         8.48        88.11         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       53.33        10.75        28.96        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 
        0.89         0.23         1.12         0.62         0.33         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 
        1.41         0.85         0.76         0.53         1.12         1.45 
TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.56         1.28         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        1.15        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 
        4.18         6.08         1.12         0.07         5.36         0.69 
TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        1.32         4.34        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 
        8.65         5.95         0.59         0.72         5.95         5.36 
TCGA-97-8177 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        4.80         8.22        14.04        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        5.03         3.72         9.44         9.27         7.82         6.97 
TCGA-L4-A4E6 
        2.50 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             0.03              0.03 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           223.96            163.10 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            12.36              8.22 
[1] "0.0 - 224.0 (12.4)" "0.0 - 163.1 (8.2)" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED     12   15
  4P GAIN WILD-TYPE  191  152
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  FEMALE              12               191
  MALE                15               152
D7V4, continuous
[1] "Remove cluster labels:" "4P GAIN MUTATED"       
clus
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                1                27 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-55-7283 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7725        TCGA-55-7910        TCGA-55-7914 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-1677        TCGA-64-5778        TCGA-69-7974        TCGA-71-6725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122        TCGA-83-5908        TCGA-86-7701 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-86-7714        TCGA-86-7954 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  4P GAIN MUTATED                            1
  4P GAIN WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  4P GAIN MUTATED                                   3
  4P GAIN WILD-TYPE                                75
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4P GAIN MUTATED                                                   22
  4P GAIN WILD-TYPE                                                206
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  4P GAIN MUTATED                                            0
  4P GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  4P GAIN MUTATED                                               0
  4P GAIN WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  4P GAIN MUTATED                                0
  4P GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  4P GAIN MUTATED                                    0
  4P GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  4P GAIN MUTATED                              0                             0
  4P GAIN WILD-TYPE                            2                            16
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  4P GAIN MUTATED                                               1
  4P GAIN WILD-TYPE                                             2
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  4P GAIN MUTATED                                   0
  4P GAIN WILD-TYPE                                 7
D7V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  4P GAIN MUTATED     5  18   2   1
  4P GAIN WILD-TYPE 108 190  28  16
D7V6, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  T1               5               108
  T2              18               190
  T3               2                28
  T4               1                16
                   vv
clus                 N0  N1 N2+N3
  4P GAIN MUTATED    18   4     4
  4P GAIN WILD-TYPE 214  67    54
D7V7, multiclass
       clus
vv      4P GAIN MUTATED 4P GAIN WILD-TYPE
  N0                 18               214
  N1                  4                67
  N2+N3               4                54
                   vv
clus                 M0  M1 M1B  MX
  4P GAIN MUTATED    19   3   1   3
  4P GAIN WILD-TYPE 228  14   2  92
D7V8, multiclass
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  M0               19               228
  M1                3                14
  M1B               1                 2
  MX                3                92
                   vv
clus                  I  II III  IV
  4P GAIN MUTATED    16   4   3   4
  4P GAIN WILD-TYPE 182  77  62  16
D7V9, multiclass
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  I                16               182
  II                4                77
  III               3                62
  IV                4                16
D7V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      1   26
  4P GAIN WILD-TYPE   19  324
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO                1                19
  YES              26               324
D7V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  4P GAIN MUTATED                                             9
  4P GAIN WILD-TYPE                                         116
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  4P GAIN MUTATED                                        8              9
  4P GAIN WILD-TYPE                                     86             75
                   vv
clus                LIFELONG NON-SMOKER
  4P GAIN MUTATED                     1
  4P GAIN WILD-TYPE                  53
D7V12, multiclass
                                             clus
vv                                            4P GAIN MUTATED 4P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               9               116
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    8                86
  CURRENT SMOKER                                            9                75
  LIFELONG NON-SMOKER                                       1                53
D7V13, continuous
                   vv
clus                 R0  R1  R2  RX
  4P GAIN MUTATED    20   1   0   0
  4P GAIN WILD-TYPE 198   8   4  13
D7V14, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  R0              20               198
  R1               1                 8
  R2               0                 4
  RX               0                13

Clustering(8) Variable = 4q gain mutation analysis
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN MUTATED     4   3
  4Q GAIN WILD-TYPE 242  82
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                7               324 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                3                82 
$`4Q GAIN MUTATED`
TCGA-38-4629 TCGA-50-6594 TCGA-64-1680 TCGA-69-7980 TCGA-78-7163 TCGA-78-7542 
       28.37        12.16        37.02        12.56       223.96        10.55 
TCGA-91-6836 
        0.36 

$`4Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 
       47.61        85.32        37.71        49.02        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        3.48        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
       18.31        18.87        17.46        17.59        13.74         8.52 
TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        3.22        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       11.47        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
       33.37         0.72         8.38        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.02         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        6.48         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.85         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 
        0.30         0.10         4.80         6.97         0.49         1.58 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.61         2.14         3.45         1.08         1.02         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 
        1.58         0.03         0.92         0.16         5.29        68.81 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
       47.77        19.53        39.22        17.75        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       39.09        55.40        44.38        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        2.04         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 
        6.12        22.68        13.61         4.24         7.56         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 
        2.30         2.93         3.25         2.50         4.21         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        1.32         4.01         1.25        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
       27.16         5.65        19.27        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 
       40.11        22.29         7.04       104.15         8.48        88.11 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       26.53        31.20         8.02        53.33        10.75        28.96 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 
       32.68        13.81         0.36         0.89         0.23         1.12 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.62         0.33         0.79         1.41         0.85         0.76 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 
        0.69         0.53         1.12         1.45         0.56         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 
        1.22        41.33         0.03         1.28         1.15        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        4.18         0.92         1.02         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
        1.12         0.07         5.36         0.69         1.32         4.34 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 
        0.59         0.72         5.95         5.36         4.80         0.49 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
        8.22        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        3.72         9.44         9.27         7.82         6.97         2.50 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             0.36              0.03 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           223.96            163.10 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            12.56              8.35 
[1] "0.4 - 224.0 (12.6)" "0.0 - 163.1 (8.4)" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      3    6
  4Q GAIN WILD-TYPE  200  161
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  FEMALE               3               200
  MALE                 6               161
D8V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  4Q GAIN MUTATED                            0
  4Q GAIN WILD-TYPE                         11
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  4Q GAIN MUTATED                                   1
  4Q GAIN WILD-TYPE                                77
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4Q GAIN MUTATED                                                    7
  4Q GAIN WILD-TYPE                                                221
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  4Q GAIN MUTATED                                            0
  4Q GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  4Q GAIN MUTATED                                               0
  4Q GAIN WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  4Q GAIN MUTATED                                0
  4Q GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  4Q GAIN MUTATED                                    0
  4Q GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  4Q GAIN MUTATED                              0                             0
  4Q GAIN WILD-TYPE                            2                            16
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  4Q GAIN MUTATED                                               1
  4Q GAIN WILD-TYPE                                             2
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  4Q GAIN MUTATED                                   0
  4Q GAIN WILD-TYPE                                 7
D8V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  4Q GAIN MUTATED     1   6   2   0
  4Q GAIN WILD-TYPE 112 202  28  17
D8V6, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  T1               1               112
  T2               6               202
  T3               2                28
  T4               0                17
                   vv
clus                 N0  N1 N2+N3
  4Q GAIN MUTATED     7   0     2
  4Q GAIN WILD-TYPE 225  71    56
D8V7, multiclass
       clus
vv      4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  N0                  7               225
  N1                  0                71
  N2+N3               2                56
                   vv
clus                 M0  M1 M1B  MX
  4Q GAIN MUTATED     7   1   0   1
  4Q GAIN WILD-TYPE 240  16   3  94
D8V8, multiclass
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  M0                7               240
  M1                1                16
  M1B               0                 3
  MX                1                94
                   vv
clus                  I  II III  IV
  4Q GAIN MUTATED     6   1   1   1
  4Q GAIN WILD-TYPE 192  80  64  19
D8V9, multiclass
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  I                 6               192
  II                1                80
  III               1                64
  IV                1                19
D8V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      1    8
  4Q GAIN WILD-TYPE   19  342
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO                1                19
  YES               8               342
D8V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  4Q GAIN MUTATED                                             5
  4Q GAIN WILD-TYPE                                         120
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  4Q GAIN MUTATED                                        1              3
  4Q GAIN WILD-TYPE                                     93             81
                   vv
clus                LIFELONG NON-SMOKER
  4Q GAIN MUTATED                     0
  4Q GAIN WILD-TYPE                  54
D8V12, multiclass
                                             clus
vv                                            4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5               120
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                93
  CURRENT SMOKER                                            3                81
  LIFELONG NON-SMOKER                                       0                54
D8V13, continuous
                   vv
clus                 R0  R1  R2  RX
  4Q GAIN MUTATED     6   0   0   0
  4Q GAIN WILD-TYPE 212   9   4  13
D8V14, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  R0               6               212
  R1               0                 9
  R2               0                 4
  RX               0                13

Clustering(9) Variable = 5p gain mutation analysis
D9V1, survival
                   sevent
clus2                 0   1
  5P GAIN MUTATED    93  32
  5P GAIN WILD-TYPE 153  53
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              125               206 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               32                53 
$`5P GAIN MUTATED`
TCGA-05-4405 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-5423 TCGA-05-5425 
       20.05        30.02        26.01        25.02         4.96         2.96 
TCGA-35-3615 TCGA-35-5375 TCGA-38-4626 TCGA-38-4628 TCGA-38-4629 TCGA-38-4632 
        0.46         8.68        85.32        49.02        28.37        44.61 
TCGA-44-2656 TCGA-44-2659 TCGA-44-2668 TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 
       19.10        17.39         8.09         6.21         4.60        16.37 
TCGA-44-5645 TCGA-44-6147 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-7659 
        6.84         7.76         5.42         2.70        32.45         9.80 
TCGA-44-7662 TCGA-44-7669 TCGA-44-8117 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        1.64        18.87         8.52        28.11        28.57        12.66 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4512 TCGA-49-6743 TCGA-49-6744 TCGA-50-5045 
       46.72        14.07        29.75        12.13        12.99        71.47 
TCGA-50-5051 TCGA-50-5930 TCGA-50-5933 TCGA-50-5935 TCGA-50-5946 TCGA-50-6591 
       14.96         9.27        77.88        21.47        11.47         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-7109 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 
       25.51        11.05         8.38        31.89        23.05        38.73 
TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6970 TCGA-55-6972 TCGA-55-6979 
       48.62         2.86         0.07        15.25        48.49         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6987 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        2.20        45.34        38.47         1.28         1.02         1.02 
TCGA-55-7903 TCGA-55-7910 TCGA-55-8094 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 
        0.62         6.48         0.13         1.41         7.46         0.30 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-A490 TCGA-55-A494 TCGA-55-A4DG 
        6.97         0.49         1.58         1.58         0.16         5.29 
TCGA-62-8399 TCGA-64-1679 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-67-3770 
       68.81        55.40        37.02        83.84        30.44         0.99 
TCGA-67-3773 TCGA-67-6215 TCGA-69-7760 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
        2.04         0.89         5.06        13.61         4.24         7.56 
TCGA-69-8253 TCGA-73-4658 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
        3.25        52.57        15.35         0.46         1.32         4.01 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7147 TCGA-78-7149 TCGA-78-7154 TCGA-78-7155 
       17.06       163.10        19.27        35.93        19.50        38.50 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7539 
      223.96         8.48        26.53        31.20         8.02        10.75 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7711 TCGA-86-7953 TCGA-86-8054 TCGA-86-8279 
       32.68        13.81         0.89         1.12         0.62         0.69 
TCGA-86-8585 TCGA-91-6828 TCGA-91-6836 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
        1.12         1.22         0.36         9.76         4.18         1.12 
TCGA-95-7947 TCGA-97-7547 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
        1.32        47.18        43.76         8.65         5.95         0.59 
TCGA-99-8025 TCGA-99-8033 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-L4-A4E5 
       14.04         5.56         9.44         9.27         6.97 

$`5P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       29.95        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4627 
        0.99         2.04         7.36         5.95        47.61        37.71 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       35.28        11.64         5.19        26.30         4.37        18.87 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 
       13.15         3.39        15.78        13.15         3.19        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        8.32         6.44         3.48         0.30         3.35         9.93 
TCGA-44-6148 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-44-7660 TCGA-44-7661 
        3.12        63.72        36.49        16.41         5.33         5.03 
TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8119 TCGA-49-4486 
       18.31        17.46        17.59        13.74         3.22        76.21 
TCGA-49-4494 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 
       35.54        32.84         8.81        29.46        43.20        15.02 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
        4.93         0.03        20.48        48.82        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5931 TCGA-50-5932 TCGA-50-5936 TCGA-50-5939 
       49.28         8.05         8.78        35.87         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6594 TCGA-50-6595 
        9.37         4.44        12.26        42.31        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7813 TCGA-55-1596 TCGA-55-6642 
       33.37         0.72        35.11        13.74        45.17        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 
        0.79        42.48        40.70         0.92         3.88         5.46 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-7281 
       32.71        60.03        24.99        40.54        71.05         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7728 TCGA-55-7815 
        1.12         0.13         3.12         1.32         0.79         1.78 
TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        0.53         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8097 TCGA-55-8299 TCGA-55-8512 TCGA-55-8513 TCGA-55-8619 
        0.85         0.49         7.07         0.10         4.80         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 
        2.14         3.45         1.08         1.02         0.95         0.03 
TCGA-55-A493 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 
        0.92        47.77        19.53        39.22        17.75        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1681 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 
       20.65        39.09        44.38         0.10        16.67        39.52 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 
        7.33         1.97         0.59         0.59         0.69        13.87 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
        6.12        22.68         6.05         2.30         2.93        12.56 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        2.50         4.21         2.01        23.38        29.95        20.28 
TCGA-73-4677 TCGA-73-7498 TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7150 
        1.25        20.42        27.16         5.65        20.58        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       39.48        24.99        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7167 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 
        7.04       104.15        88.11        53.33        28.96        10.55 
TCGA-86-7701 TCGA-86-7713 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
        0.36         0.23         0.33         0.79         1.41         0.85 
TCGA-86-8278 TCGA-86-8280 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6829 
        0.76         0.53         1.45         0.56         1.28        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        0.03         1.28         1.15        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-8067 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7948 
        1.02         6.08         0.07         5.36         0.69         4.34 
TCGA-97-7546 TCGA-97-7552 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 
       31.66        48.53         0.72         5.95         5.36         4.80 
TCGA-97-8179 TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-J2-8192 TCGA-J2-8194 
        0.49         8.22        15.06         1.45         5.03         3.72 
TCGA-J2-A4AG TCGA-L4-A4E6 
        7.82         2.50 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.07              0.03 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           223.96            104.15 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             9.27              7.92 
[1] "0.1 - 224.0 (9.3)" "0.0 - 104.2 (7.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     74   64
  5P GAIN WILD-TYPE  129  103
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  FEMALE              74               129
  MALE                64               103
D9V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  5P GAIN MUTATED                            2
  5P GAIN WILD-TYPE                          9
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  5P GAIN MUTATED                                  28
  5P GAIN WILD-TYPE                                50
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5P GAIN MUTATED                                                   89
  5P GAIN WILD-TYPE                                                139
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  5P GAIN MUTATED                                            1
  5P GAIN WILD-TYPE                                          3
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  5P GAIN MUTATED                                               7
  5P GAIN WILD-TYPE                                             9
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  5P GAIN MUTATED                                2
  5P GAIN WILD-TYPE                              0
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  5P GAIN MUTATED                                    2
  5P GAIN WILD-TYPE                                  1
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  5P GAIN MUTATED                              0                             5
  5P GAIN WILD-TYPE                            2                            11
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  5P GAIN MUTATED                                               2
  5P GAIN WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  5P GAIN MUTATED                                   0
  5P GAIN WILD-TYPE                                 7
D9V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  5P GAIN MUTATED    43  79   9   5
  5P GAIN WILD-TYPE  70 129  21  12
D9V6, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  T1              43                70
  T2              79               129
  T3               9                21
  T4               5                12
                   vv
clus                 N0  N1 N2+N3
  5P GAIN MUTATED    85  24    25
  5P GAIN WILD-TYPE 147  47    33
D9V7, multiclass
       clus
vv      5P GAIN MUTATED 5P GAIN WILD-TYPE
  N0                 85               147
  N1                 24                47
  N2+N3              25                33
                   vv
clus                 M0  M1 M1B  MX
  5P GAIN MUTATED    88   6   1  40
  5P GAIN WILD-TYPE 159  11   2  55
D9V8, multiclass
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  M0               88               159
  M1                6                11
  M1B               1                 2
  MX               40                55
                   vv
clus                  I  II III  IV
  5P GAIN MUTATED    76  27  26   8
  5P GAIN WILD-TYPE 122  54  39  12
D9V9, multiclass
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  I                76               122
  II               27                54
  III              26                39
  IV                8                12
D9V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     11  127
  5P GAIN WILD-TYPE    9  223
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO               11                 9
  YES             127               223
D9V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  5P GAIN MUTATED                                            54
  5P GAIN WILD-TYPE                                          71
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  5P GAIN MUTATED                                       30             31
  5P GAIN WILD-TYPE                                     64             53
                   vv
clus                LIFELONG NON-SMOKER
  5P GAIN MUTATED                    19
  5P GAIN WILD-TYPE                  35
D9V12, multiclass
                                             clus
vv                                            5P GAIN MUTATED 5P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              54                71
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   30                64
  CURRENT SMOKER                                           31                53
  LIFELONG NON-SMOKER                                      19                35
D9V13, continuous
                   vv
clus                 R0  R1  R2  RX
  5P GAIN MUTATED    85   1   0   7
  5P GAIN WILD-TYPE 133   8   4   6
D9V14, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  R0              85               133
  R1               1                 8
  R2               0                 4
  RX               7                 6

Clustering(10) Variable = 5q gain mutation analysis
D10V1, survival
                   sevent
clus2                 0   1
  5Q GAIN MUTATED    29  10
  5Q GAIN WILD-TYPE 217  75
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               39               292 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               10                75 
$`5Q GAIN MUTATED`
TCGA-05-4426 TCGA-05-5423 TCGA-35-3615 TCGA-44-2659 TCGA-44-2665 TCGA-44-4112 
       26.01         4.96         0.46        17.39        13.15         4.60 
TCGA-44-5645 TCGA-44-6777 TCGA-44-7659 TCGA-49-4501 TCGA-49-4512 TCGA-50-5051 
        6.84        32.45         9.80        46.72        29.75        14.96 
TCGA-50-5935 TCGA-50-6591 TCGA-50-6592 TCGA-55-1595 TCGA-55-6543 TCGA-55-6972 
       21.47         3.88        25.51        48.62         0.07        48.49 
TCGA-55-6980 TCGA-55-7910 TCGA-55-8514 TCGA-55-A4DG TCGA-64-1680 TCGA-64-5775 
        2.20         6.48         6.97         5.29        37.02         0.10 
TCGA-67-6215 TCGA-69-7760 TCGA-69-8253 TCGA-73-4675 TCGA-78-7147 TCGA-78-7163 
        0.89         5.06         3.25         1.32        19.27       223.96 
TCGA-78-7220 TCGA-78-7536 TCGA-78-7539 TCGA-78-7633 TCGA-91-6836 TCGA-93-7347 
       26.53         8.02        10.75        32.68         0.36         9.76 
TCGA-95-7947 TCGA-97-7547 TCGA-J2-A4AE 
        1.32        47.18         9.27 

$`5Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         2.96         0.99         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       26.30         4.37        18.87        19.10        13.15         3.39 
TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        6.21         3.48        16.37         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 
        7.76         3.12         5.42         2.70        63.72        36.49 
TCGA-44-6779 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
       16.41         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 
       17.46        17.59        13.74         8.52         3.22        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 
       28.11        28.57        12.66        35.54        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 
        4.93         0.03        20.48        71.47        48.82        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       77.88         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       11.47        42.31        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
        0.72         8.38        35.11        31.89        13.74        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       38.73        45.17         2.86        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       40.70        15.25         0.92         3.88         5.46         7.76 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.28         1.02         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        0.53         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.85         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
        0.30         0.10         4.80         0.49         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 
        2.14         3.45         1.08         1.02         0.95         1.58 
TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
        0.03         0.92         0.16        68.81        47.77        19.53 
TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       39.22        17.75        56.81        20.65        39.09        55.40 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       44.38        83.84        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 
        0.99         1.97         0.59         2.04         0.59         0.69 
TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
       13.87         6.12        22.68        13.61         4.24         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8254 TCGA-69-8255 
        6.05         2.30         2.93        12.56         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        0.46         4.01         1.25        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
       27.16         5.65        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 
       22.29         7.04       104.15         8.48        88.11        31.20 
TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       53.33        28.96        10.55        13.81         0.36         0.89 
TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 
        0.23         1.12         0.62         0.33         0.79         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 
        0.85         0.76         0.69         0.53         1.12         1.45 
TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.56         1.28         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7348 
        1.15        26.93         4.18         0.92         1.02         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7948 
        6.08         1.12         0.07         5.36         0.69         4.34 
TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       31.66        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 
        0.72         5.95         5.36         4.80         0.49         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        9.44         7.82         6.97         2.50 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             0.07              0.03 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
           223.96            163.10 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            9.760             8.415 
[1] "0.1 - 224.0 (9.8)" "0.0 - 163.1 (8.4)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED     25   16
  5Q GAIN WILD-TYPE  178  151
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  FEMALE              25               178
  MALE                16               151
D10V4, continuous
[1] "Remove cluster labels:" "5Q GAIN MUTATED"       
clus
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                1                27 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-55-7283 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7725        TCGA-55-7914        TCGA-64-1677 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-69-7974        TCGA-71-6725 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122        TCGA-83-5908        TCGA-86-7701 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-86-7714        TCGA-86-7954 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  5Q GAIN MUTATED                            1
  5Q GAIN WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  5Q GAIN MUTATED                                   9
  5Q GAIN WILD-TYPE                                69
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5Q GAIN MUTATED                                                   26
  5Q GAIN WILD-TYPE                                                202
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  5Q GAIN MUTATED                                            1
  5Q GAIN WILD-TYPE                                          3
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  5Q GAIN MUTATED                                               1
  5Q GAIN WILD-TYPE                                            15
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  5Q GAIN MUTATED                                1
  5Q GAIN WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  5Q GAIN MUTATED                                    0
  5Q GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  5Q GAIN MUTATED                              0                             2
  5Q GAIN WILD-TYPE                            2                            14
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  5Q GAIN MUTATED                                               0
  5Q GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  5Q GAIN MUTATED                                   0
  5Q GAIN WILD-TYPE                                 7
D10V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  5Q GAIN MUTATED    11  26   2   1
  5Q GAIN WILD-TYPE 102 182  28  16
D10V6, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  T1              11               102
  T2              26               182
  T3               2                28
  T4               1                16
                   vv
clus                 N0  N1 N2+N3
  5Q GAIN MUTATED    27   6     6
  5Q GAIN WILD-TYPE 205  65    52
D10V7, multiclass
       clus
vv      5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  N0                 27               205
  N1                  6                65
  N2+N3               6                52
                   vv
clus                 M0  M1 M1B  MX
  5Q GAIN MUTATED    26   3   0  10
  5Q GAIN WILD-TYPE 221  14   3  85
D10V8, multiclass
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  M0               26               221
  M1                3                14
  M1B               0                 3
  MX               10                85
                   vv
clus                  I  II III  IV
  5Q GAIN MUTATED    23   8   6   3
  5Q GAIN WILD-TYPE 175  73  59  17
D10V9, multiclass
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  I                23               175
  II                8                73
  III               6                59
  IV                3                17
D10V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      5   36
  5Q GAIN WILD-TYPE   15  314
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO                5                15
  YES              36               314
D10V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  5Q GAIN MUTATED                                            15
  5Q GAIN WILD-TYPE                                         110
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  5Q GAIN MUTATED                                        9              6
  5Q GAIN WILD-TYPE                                     85             78
                   vv
clus                LIFELONG NON-SMOKER
  5Q GAIN MUTATED                    10
  5Q GAIN WILD-TYPE                  44
D10V12, multiclass
                                             clus
vv                                            5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              15               110
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    9                85
  CURRENT SMOKER                                            6                78
  LIFELONG NON-SMOKER                                      10                44
D10V13, continuous
                   vv
clus                 R0  R1  R2  RX
  5Q GAIN MUTATED    23   0   0   2
  5Q GAIN WILD-TYPE 195   9   4  11
D10V14, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  R0              23               195
  R1               0                 9
  R2               0                 4
  RX               2                11

Clustering(11) Variable = 6p gain mutation analysis
D11V1, survival
                   sevent
clus2                 0   1
  6P GAIN MUTATED    41  12
  6P GAIN WILD-TYPE 205  73
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               53               278 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               12                73 
$`6P GAIN MUTATED`
TCGA-05-4420 TCGA-05-5425 TCGA-35-3615 TCGA-35-5375 TCGA-38-4625 TCGA-44-6147 
       29.95         2.96         0.46         8.68        47.61         7.76 
TCGA-44-6774 TCGA-44-7667 TCGA-44-7670 TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 
        5.42        18.31        17.46         9.37        12.26        11.47 
TCGA-50-6591 TCGA-50-6673 TCGA-50-7109 TCGA-55-1592 TCGA-55-1595 TCGA-55-6970 
        3.88         0.72         8.38        23.05        48.62        15.25 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8620 TCGA-55-A490 TCGA-62-8399 TCGA-62-A470 
        6.97         0.49         2.14         1.58        68.81        39.22 
TCGA-64-1677 TCGA-64-1680 TCGA-67-3773 TCGA-69-7763 TCGA-69-7764 TCGA-69-7979 
       20.65        37.02         2.04        22.68        13.61         2.93 
TCGA-71-6725 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4677 TCGA-73-7498 
        2.01        29.95        15.35         0.46         1.25        20.42 
TCGA-78-7147 TCGA-78-7149 TCGA-78-7155 TCGA-78-7161 TCGA-78-7162 TCGA-78-7220 
       19.27        35.93        38.50         7.04       104.15        26.53 
TCGA-78-7539 TCGA-78-7633 TCGA-86-8075 TCGA-86-8279 TCGA-91-6836 TCGA-97-7553 
       10.75        32.68         1.41         0.69         0.36        43.76 
TCGA-97-7938 TCGA-97-8179 TCGA-99-8025 TCGA-J2-8194 TCGA-J2-A4AE 
        0.59         0.49        14.04         3.72         9.27 

$`6P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         4.96         0.99         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        7.36         5.95        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F 
       35.28        11.64        44.61         5.19        26.30         4.37 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
        6.21         4.60         3.48        16.37         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        3.35         9.93         3.12         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 
       18.87        17.59        13.74         8.52         3.22        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       15.12         4.44        42.31        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1594 
        6.21        33.37        35.11        31.89        13.74        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       40.70         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        1.32         1.28         1.02         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 
        0.62         0.53         6.48         0.69         0.10         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 
        3.02         0.20         0.85         0.13         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8616 
        1.41         7.46         0.30         0.10         4.80         1.58 
TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 
        1.61         3.45         1.08         1.02         0.95         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-A46O TCGA-62-A46P TCGA-62-A472 
        0.92         0.16         5.29        47.77        19.53        17.75 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       56.81        39.09        55.40        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        0.59         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 
        6.12         4.24         7.56         6.05         2.30        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
        3.25         2.50         4.21        52.57        23.38        20.28 
TCGA-73-4675 TCGA-73-4676 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.32         4.01        17.06       163.10        27.16         5.65 
TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 
       20.58        21.86        39.48        24.99        19.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
        5.88        40.11        22.29       223.96         8.48        88.11 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-83-5908 
       31.20         8.02        53.33        28.96        10.55        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 
        0.36         0.89         0.23         1.12         0.62         0.33 
TCGA-86-8074 TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 
        0.79         0.85         0.76         0.53         1.12         1.45 
TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.56         1.28         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        1.15        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 
        4.18         6.08         1.12         0.07         5.36         0.69 
TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7554 
        1.32         4.34        31.66        47.18        48.53         8.65 
TCGA-97-7937 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 
        5.95         0.72         5.95         5.36         4.80         8.22 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-A4AD TCGA-J2-A4AG 
       15.06         1.45         5.56         5.03         9.44         7.82 
TCGA-L4-A4E5 TCGA-L4-A4E6 
        6.97         2.50 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             0.36              0.03 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           104.15            223.96 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           10.750             8.155 
[1] "0.4 - 104.2 (10.8)" "0.0 - 224.0 (8.2)" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED     31   25
  6P GAIN WILD-TYPE  172  142
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  FEMALE              31               172
  MALE                25               142
D11V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  6P GAIN MUTATED                            4
  6P GAIN WILD-TYPE                          7
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  6P GAIN MUTATED                                  13
  6P GAIN WILD-TYPE                                65
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6P GAIN MUTATED                                                   30
  6P GAIN WILD-TYPE                                                198
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  6P GAIN MUTATED                                            0
  6P GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  6P GAIN MUTATED                                               3
  6P GAIN WILD-TYPE                                            13
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  6P GAIN MUTATED                                1
  6P GAIN WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  6P GAIN MUTATED                                    1
  6P GAIN WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  6P GAIN MUTATED                              0                             4
  6P GAIN WILD-TYPE                            2                            12
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  6P GAIN MUTATED                                               0
  6P GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  6P GAIN MUTATED                                   0
  6P GAIN WILD-TYPE                                 7
D11V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  6P GAIN MUTATED    20  29   6   1
  6P GAIN WILD-TYPE  93 179  24  16
D11V6, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  T1              20                93
  T2              29               179
  T3               6                24
  T4               1                16
                   vv
clus                 N0  N1 N2+N3
  6P GAIN MUTATED    37   7    10
  6P GAIN WILD-TYPE 195  64    48
D11V7, multiclass
       clus
vv      6P GAIN MUTATED 6P GAIN WILD-TYPE
  N0                 37               195
  N1                  7                64
  N2+N3              10                48
                   vv
clus                 M0  M1 M1B  MX
  6P GAIN MUTATED    37   3   1  15
  6P GAIN WILD-TYPE 210  14   2  80
D11V8, multiclass
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  M0               37               210
  M1                3                14
  M1B               1                 2
  MX               15                80
                   vv
clus                  I  II III  IV
  6P GAIN MUTATED    30  12  10   4
  6P GAIN WILD-TYPE 168  69  55  16
D11V9, multiclass
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  I                30               168
  II               12                69
  III              10                55
  IV                4                16
D11V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      2   54
  6P GAIN WILD-TYPE   18  296
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO                2                18
  YES              54               296
D11V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  6P GAIN MUTATED                                            18
  6P GAIN WILD-TYPE                                         107
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  6P GAIN MUTATED                                       14             17
  6P GAIN WILD-TYPE                                     80             67
                   vv
clus                LIFELONG NON-SMOKER
  6P GAIN MUTATED                     6
  6P GAIN WILD-TYPE                  48
D11V12, multiclass
                                             clus
vv                                            6P GAIN MUTATED 6P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              18               107
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   14                80
  CURRENT SMOKER                                           17                67
  LIFELONG NON-SMOKER                                       6                48
D11V13, continuous
                   vv
clus                 R0  R1  R2  RX
  6P GAIN MUTATED    33   1   0   1
  6P GAIN WILD-TYPE 185   8   4  12
D11V14, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  R0              33               185
  R1               1                 8
  R2               0                 4
  RX               1                12

Clustering(12) Variable = 6q gain mutation analysis
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN MUTATED    12   3
  6Q GAIN WILD-TYPE 234  82
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               15               316 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                3                82 
$`6Q GAIN MUTATED`
TCGA-38-4625 TCGA-44-7667 TCGA-44-7670 TCGA-50-6591 TCGA-50-6673 TCGA-50-7109 
       47.61        18.31        17.46         3.88         0.72         8.38 
TCGA-55-7910 TCGA-55-8514 TCGA-55-8620 TCGA-71-6725 TCGA-78-7220 TCGA-78-7539 
        6.48         6.97         2.14         2.01        26.53        10.75 
TCGA-91-6836 TCGA-99-8025 TCGA-J2-A4AE 
        0.36        14.04         9.27 

$`6Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        3.48        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 
       18.87        17.59        13.74         8.52         3.22        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-53-7624 
       25.51        11.05        12.16         6.21        33.37        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        1.32         1.28         1.02         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.62         0.53         0.69         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 
        0.20         0.85         0.13         0.49         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 
        7.46         0.30         0.10         4.80         0.49         1.58 
TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 
        1.61         3.45         1.08         1.02         0.95         1.58 
TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O 
        0.03         0.92         0.16         5.29        68.81        47.77 
TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
       19.53        39.22        17.75        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       55.40        37.02        44.38        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        2.04         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 
        6.12        22.68        13.61         4.24         7.56         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        2.30         2.93        12.56         3.25         2.50         4.21 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        1.32         4.01         1.25        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
       27.16         5.65        19.27        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 
       88.11        31.20         8.02        53.33        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 
       32.68        13.81         0.36         0.89         0.23         1.12 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.62         0.33         0.79         1.41         0.85         0.76 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 
        0.69         0.53         1.12         1.45         0.56         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 
        1.22        41.33         0.03         1.28         1.15        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        4.18         0.92         1.02         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
        1.12         0.07         5.36         0.69         1.32         4.34 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 
        0.59         0.72         5.95         5.36         4.80         0.49 
TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
        8.22        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        9.44         7.82         6.97         2.50 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             0.36              0.03 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            47.61            223.96 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             8.38              8.50 
[1] "0.4 - 47.6 (8.4)"  "0.0 - 224.0 (8.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED     13    2
  6Q GAIN WILD-TYPE  190  165
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  FEMALE              13               190
  MALE                 2               165
D12V4, continuous
[1] "Remove cluster labels:" "6Q GAIN MUTATED"       
clus
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                2                26 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-55-7283 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7725        TCGA-55-7914        TCGA-64-1677 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-69-7974        TCGA-73-4659 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4676 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-75-5122        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7714        TCGA-86-7954        TCGA-91-6849 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-93-7348        TCGA-99-7458 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  6Q GAIN MUTATED                            0
  6Q GAIN WILD-TYPE                         11
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  6Q GAIN MUTATED                                   2
  6Q GAIN WILD-TYPE                                76
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6Q GAIN MUTATED                                                   12
  6Q GAIN WILD-TYPE                                                216
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  6Q GAIN MUTATED                                            0
  6Q GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  6Q GAIN MUTATED                                               0
  6Q GAIN WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  6Q GAIN MUTATED                                0
  6Q GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  6Q GAIN MUTATED                                    0
  6Q GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  6Q GAIN MUTATED                              0                             1
  6Q GAIN WILD-TYPE                            2                            15
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  6Q GAIN MUTATED                                               0
  6Q GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  6Q GAIN MUTATED                                   0
  6Q GAIN WILD-TYPE                                 7
D12V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  6Q GAIN MUTATED     6   7   2   0
  6Q GAIN WILD-TYPE 107 201  28  17
D12V6, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  T1               6               107
  T2               7               201
  T3               2                28
  T4               0                17
                   vv
clus                 N0  N1 N2+N3
  6Q GAIN MUTATED    11   2     2
  6Q GAIN WILD-TYPE 221  69    56
D12V7, multiclass
       clus
vv      6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  N0                 11               221
  N1                  2                69
  N2+N3               2                56
                   vv
clus                 M0  M1 M1B  MX
  6Q GAIN MUTATED     8   1   1   5
  6Q GAIN WILD-TYPE 239  16   2  90
D12V8, multiclass
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  M0                8               239
  M1                1                16
  M1B               1                 2
  MX                5                90
                   vv
clus                  I  II III  IV
  6Q GAIN MUTATED     7   4   2   2
  6Q GAIN WILD-TYPE 191  77  63  18
D12V9, multiclass
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  I                 7               191
  II                4                77
  III               2                63
  IV                2                18
D12V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      0   15
  6Q GAIN WILD-TYPE   20  335
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO                0                20
  YES              15               335
D12V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  6Q GAIN MUTATED                                             4
  6Q GAIN WILD-TYPE                                         121
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  6Q GAIN MUTATED                                        1              7
  6Q GAIN WILD-TYPE                                     93             77
                   vv
clus                LIFELONG NON-SMOKER
  6Q GAIN MUTATED                     3
  6Q GAIN WILD-TYPE                  51
D12V12, multiclass
                                             clus
vv                                            6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4               121
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                93
  CURRENT SMOKER                                            7                77
  LIFELONG NON-SMOKER                                       3                51
D12V13, continuous
                   vv
clus                 R0  R1  R2  RX
  6Q GAIN MUTATED     8   0   0   1
  6Q GAIN WILD-TYPE 210   9   4  12
D12V14, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  R0               8               210
  R1               0                 9
  R2               0                 4
  RX               1                12

Clustering(13) Variable = 7p gain mutation analysis
D13V1, survival
                   sevent
clus2                 0   1
  7P GAIN MUTATED    77  34
  7P GAIN WILD-TYPE 169  51
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              111               220 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               34                51 
$`7P GAIN MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 
        3.98        37.02        47.05         8.02        20.05         2.96 
TCGA-05-4420 TCGA-05-5423 TCGA-35-4122 TCGA-35-5375 TCGA-38-4628 TCGA-38-4629 
       29.95         4.96         7.36         8.68        49.02        28.37 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2659 TCGA-44-3396 TCGA-44-4112 
       11.64        44.61         5.19        17.39        10.22         4.60 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6147 TCGA-44-6775 TCGA-44-7660 
       16.37         6.84         0.30         7.76         2.70         5.33 
TCGA-44-7662 TCGA-44-7669 TCGA-44-8117 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        1.64        18.87         8.52        28.57        12.66        35.54 
TCGA-49-4505 TCGA-49-4512 TCGA-49-6745 TCGA-49-6761 TCGA-50-5045 TCGA-50-5055 
       14.07        29.75         4.93         0.03        71.47        25.81 
TCGA-50-5933 TCGA-50-5936 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       77.88         8.45        12.26        11.47        42.31         3.88 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-53-7624 TCGA-55-5899 
       11.05        12.16         6.21         0.72        35.11         2.86 
TCGA-55-6543 TCGA-55-6712 TCGA-55-6972 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
        0.07         0.79        48.49         7.76         2.20        45.34 
TCGA-55-6985 TCGA-55-7283 TCGA-55-7576 TCGA-55-7726 TCGA-55-7910 TCGA-55-8510 
       40.54         1.12         1.32         1.02         6.48         7.46 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8620 TCGA-55-A493 TCGA-55-A494 TCGA-62-8399 
        6.97         0.49         2.14         0.92         0.16        68.81 
TCGA-62-A46P TCGA-64-1680 TCGA-64-1681 TCGA-64-5779 TCGA-64-5781 TCGA-67-6217 
       19.53        37.02        44.38        16.67        39.52        13.87 
TCGA-69-7760 TCGA-69-7979 TCGA-71-6725 TCGA-73-4658 TCGA-73-4670 TCGA-73-4675 
        5.06         2.93         2.01        52.57         0.46         1.32 
TCGA-73-4676 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7150 
        4.01        17.06       163.10        27.16        19.27        21.86 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7161 TCGA-78-7163 TCGA-78-7535 TCGA-78-7540 
       19.50        38.50         7.04       223.96        31.20        28.96 
TCGA-86-7701 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8279 TCGA-86-8280 
        0.36         0.33         0.79         1.41         0.69         0.53 
TCGA-86-8668 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-95-7944 
        1.45         1.28         1.15        26.93         4.18         0.69 
TCGA-95-7947 TCGA-97-7554 TCGA-97-7937 TCGA-97-8179 TCGA-99-8025 TCGA-J2-8192 
        1.32         8.65         5.95         0.49        14.04         5.03 
TCGA-J2-8194 TCGA-J2-A4AE TCGA-L4-A4E5 
        3.72         9.27         6.97 

$`7P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4417 
       38.07        19.92        14.01         9.96        24.03        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4630 
        0.46         5.95        47.61        85.32        37.71        35.28 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       26.30         4.37        18.87        19.10        13.15         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 
       15.78        13.15         3.19         8.09         8.32         6.44 
TCGA-44-3919 TCGA-44-5643 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 
        6.21         3.48         3.35         9.93         3.12         5.42 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 
       63.72        32.45        36.49        16.41         9.80         5.03 
TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8119 TCGA-49-4486 
       18.31        17.46        17.59        13.74         3.22        76.21 
TCGA-49-4487 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 
       28.11        46.72        32.84         8.81        29.46        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 
       15.02        12.13        12.99        20.48        48.82        14.96 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-6592 TCGA-50-6597 
       21.47        15.12         9.37         4.44        25.51        33.37 
TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
        8.38        31.89        13.74        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       45.17        32.61        42.48        40.70        15.25         0.92 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6986 
        3.88         5.46        32.71        60.03        24.99        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7727 
       38.47         0.59         0.13         3.12         1.28         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 
        0.79         1.78         0.62         0.53         0.69         0.10 
TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 
        0.69         3.02         0.20         0.85         0.13         0.49 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8616 
        7.07         1.41         0.30         0.10         4.80         1.58 
TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 
        1.61         3.45         1.08         1.02         0.95         1.58 
TCGA-55-A492 TCGA-55-A4DG TCGA-62-A46O TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 
        0.03         5.29        47.77        39.22        17.75        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        55.40        83.84         0.10        30.44 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        0.89         0.69         6.12        22.68        13.61         4.24 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        7.56         6.05         2.30        12.56         3.25         2.50 
TCGA-69-8255 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4677 
        4.21        23.38        29.95        20.28        15.35         1.25 
TCGA-73-7498 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 
       20.42         5.65        20.58        35.93        39.48        24.99 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 TCGA-78-7166 
       32.09         5.88        40.11        22.29       104.15         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7542 
       88.11        26.53         8.02        53.33        10.75        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 
       32.68        13.81         0.89         0.23         1.12         0.62 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8585 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 
        0.85         0.76         1.12         0.56         1.28         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6836 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
       41.33         0.03         0.36         0.92         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7948 
        4.18         6.08         1.12         0.07         5.36         4.34 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7938 TCGA-97-7941 
       31.66        47.18        48.53        43.76         0.59         0.72 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 
        5.95         5.36         4.80         8.22        15.06         1.45 
TCGA-99-8033 TCGA-J2-A4AD TCGA-J2-A4AG TCGA-L4-A4E6 
        5.56         9.44         7.82         2.50 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.03              0.03 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           223.96            104.15 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
            7.760             8.895 
[1] "0.0 - 224.0 (7.8)" "0.0 - 104.2 (8.9)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     70   54
  7P GAIN WILD-TYPE  133  113
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  FEMALE              70               133
  MALE                54               113
D13V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  7P GAIN MUTATED                            5
  7P GAIN WILD-TYPE                          6
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  7P GAIN MUTATED                                  20
  7P GAIN WILD-TYPE                                58
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7P GAIN MUTATED                                                   82
  7P GAIN WILD-TYPE                                                146
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  7P GAIN MUTATED                                            3
  7P GAIN WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  7P GAIN MUTATED                                               5
  7P GAIN WILD-TYPE                                            11
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  7P GAIN MUTATED                                0
  7P GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  7P GAIN MUTATED                                    1
  7P GAIN WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  7P GAIN MUTATED                              0                             6
  7P GAIN WILD-TYPE                            2                            10
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  7P GAIN MUTATED                                               1
  7P GAIN WILD-TYPE                                             2
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  7P GAIN MUTATED                                   1
  7P GAIN WILD-TYPE                                 6
D13V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  7P GAIN MUTATED    29  76  13   5
  7P GAIN WILD-TYPE  84 132  17  12
D13V6, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  T1              29                84
  T2              76               132
  T3              13                17
  T4               5                12
                   vv
clus                 N0  N1 N2+N3
  7P GAIN MUTATED    66  26    29
  7P GAIN WILD-TYPE 166  45    29
D13V7, multiclass
       clus
vv      7P GAIN MUTATED 7P GAIN WILD-TYPE
  N0                 66               166
  N1                 26                45
  N2+N3              29                29
                   vv
clus                 M0  M1 M1B  MX
  7P GAIN MUTATED    82   9   1  27
  7P GAIN WILD-TYPE 165   8   2  68
D13V8, multiclass
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  M0               82               165
  M1                9                 8
  M1B               1                 2
  MX               27                68
                   vv
clus                  I  II III  IV
  7P GAIN MUTATED    58  24  29  10
  7P GAIN WILD-TYPE 140  57  36  10
D13V9, multiclass
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  I                58               140
  II               24                57
  III              29                36
  IV               10                10
D13V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED      5  119
  7P GAIN WILD-TYPE   15  231
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO                5                15
  YES             119               231
D13V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  7P GAIN MUTATED                                            44
  7P GAIN WILD-TYPE                                          81
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  7P GAIN MUTATED                                       28             26
  7P GAIN WILD-TYPE                                     66             58
                   vv
clus                LIFELONG NON-SMOKER
  7P GAIN MUTATED                    21
  7P GAIN WILD-TYPE                  33
D13V12, multiclass
                                             clus
vv                                            7P GAIN MUTATED 7P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              44                81
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   28                66
  CURRENT SMOKER                                           26                58
  LIFELONG NON-SMOKER                                      21                33
D13V13, continuous
                   vv
clus                 R0  R1  R2  RX
  7P GAIN MUTATED    72   3   2   6
  7P GAIN WILD-TYPE 146   6   2   7
D13V14, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  R0              72               146
  R1               3                 6
  R2               2                 2
  RX               6                 7

Clustering(14) Variable = 7q gain mutation analysis
D14V1, survival
                   sevent
clus2                 0   1
  7Q GAIN MUTATED    63  18
  7Q GAIN WILD-TYPE 183  67
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               81               250 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               18                67 
$`7Q GAIN MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 
        3.98        37.02        47.05         8.02        20.05         2.96 
TCGA-05-4420 TCGA-05-5423 TCGA-05-5425 TCGA-35-4122 TCGA-35-5375 TCGA-38-4632 
       29.95         4.96         2.96         7.36         8.68        44.61 
TCGA-38-6178 TCGA-44-2662 TCGA-44-3396 TCGA-44-5645 TCGA-44-6144 TCGA-44-6147 
        5.19        15.78        10.22         6.84         0.30         7.76 
TCGA-44-7660 TCGA-44-7662 TCGA-44-7669 TCGA-44-8117 TCGA-49-4490 TCGA-49-4494 
        5.33         1.64        18.87         8.52        12.66        35.54 
TCGA-49-4505 TCGA-49-4512 TCGA-49-6745 TCGA-50-5045 TCGA-50-5930 TCGA-50-5944 
       14.07        29.75         4.93        71.47         9.27        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-55-1592 TCGA-55-6543 TCGA-55-6712 
       11.47        42.31         3.88        23.05         0.07         0.79 
TCGA-55-6972 TCGA-55-6980 TCGA-55-6981 TCGA-55-6985 TCGA-55-7283 TCGA-55-7576 
       48.49         2.20        45.34        40.54         1.12         1.32 
TCGA-55-7726 TCGA-55-7910 TCGA-55-8510 TCGA-55-8514 TCGA-55-8620 TCGA-55-A493 
        1.02         6.48         7.46         6.97         2.14         0.92 
TCGA-55-A494 TCGA-62-8399 TCGA-64-1680 TCGA-64-1681 TCGA-64-5781 TCGA-69-7760 
        0.16        68.81        37.02        44.38        39.52         5.06 
TCGA-69-7978 TCGA-69-7979 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4670 
        2.30         2.93         2.01        52.57        20.28         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-7499 TCGA-78-7145 TCGA-78-7163 TCGA-78-7540 
        1.32         4.01        17.06        27.16       223.96        28.96 
TCGA-86-7701 TCGA-86-8055 TCGA-86-8075 TCGA-86-8280 TCGA-86-8668 TCGA-91-6835 
        0.36         0.33         1.41         0.53         1.45         1.15 
TCGA-91-6847 TCGA-91-6848 TCGA-95-7944 TCGA-95-7947 TCGA-97-7554 TCGA-97-7937 
       26.93         4.18         0.69         1.32         8.65         5.95 
TCGA-97-8179 TCGA-99-8025 TCGA-L4-A4E5 
        0.49        14.04         6.97 

$`7Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4417 
       38.07        19.92        14.01         9.96        24.03        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       24.00        15.02         1.02         0.99         2.04         0.46 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       35.28        11.64        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       13.15        17.39         3.39        13.15         3.19         8.09 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7667 
       32.45        36.49        16.41         9.80         5.03        18.31 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 
       17.46        17.59        13.74         3.22        76.21        28.11 
TCGA-49-4488 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 
       28.57        46.72        32.84         8.81        29.46        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6761 TCGA-50-5044 TCGA-50-5049 
       15.02        12.13        12.99         0.03        20.48        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5931 
       14.96        25.81         9.76        49.28         8.05         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        4.44        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1594 
        0.72         8.38        35.11        31.89        13.74        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 
       48.62        45.17         2.86        32.61        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6982 
       15.25         0.92         3.88         5.46         7.76        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7573 
       60.03        24.99        71.05        38.47         0.59         0.13 
TCGA-55-7574 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        3.12         1.28         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        0.53         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8511 
        0.85         0.13         0.49         7.07         1.41         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 
        0.10         4.80         0.49         1.58         1.61         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A4DG 
        1.08         1.02         0.95         1.58         0.03         5.29 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
       47.77        19.53        39.22        17.75        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        55.40        83.84         0.10        30.44        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.89         0.69        13.87         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        4.24         7.56         6.05        12.56         3.25         2.50 
TCGA-69-8255 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4677 TCGA-73-7498 
        4.21        23.38        29.95        15.35         1.25        20.42 
TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
      163.10         5.65        19.27        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 
       40.11        22.29         7.04       104.15         8.48        88.11 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7542 
       26.53        31.20         8.02        53.33        10.75        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 
       32.68        13.81         0.89         0.23         1.12         0.62 
TCGA-86-8074 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8585 TCGA-86-8671 
        0.79         0.85         0.76         0.69         1.12         0.56 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6836 
        1.28         1.22        41.33         0.03         1.28         0.36 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        0.92         1.02         9.76         4.18         6.08         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.07         5.36         4.34        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 
       43.76         0.59         0.72         5.95         5.36         4.80 
TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
        8.22        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 
        9.44         9.27         7.82         2.50 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.07              0.03 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           223.96            163.10 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             6.97              9.32 
[1] "0.1 - 224.0 (7.0)" "0.0 - 163.1 (9.3)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     47   43
  7Q GAIN WILD-TYPE  156  124
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  FEMALE              47               156
  MALE                43               124
D14V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  7Q GAIN MUTATED                            4
  7Q GAIN WILD-TYPE                          7
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  7Q GAIN MUTATED                                  18
  7Q GAIN WILD-TYPE                                60
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7Q GAIN MUTATED                                                   55
  7Q GAIN WILD-TYPE                                                173
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  7Q GAIN MUTATED                                            3
  7Q GAIN WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  7Q GAIN MUTATED                                               4
  7Q GAIN WILD-TYPE                                            12
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  7Q GAIN MUTATED                                0
  7Q GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  7Q GAIN MUTATED                                    1
  7Q GAIN WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  7Q GAIN MUTATED                              0                             5
  7Q GAIN WILD-TYPE                            2                            11
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  7Q GAIN MUTATED                                               0
  7Q GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  7Q GAIN MUTATED                                   0
  7Q GAIN WILD-TYPE                                 7
D14V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  7Q GAIN MUTATED    21  56   8   4
  7Q GAIN WILD-TYPE  92 152  22  13
D14V6, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  T1              21                92
  T2              56               152
  T3               8                22
  T4               4                13
                   vv
clus                 N0  N1 N2+N3
  7Q GAIN MUTATED    51  17    19
  7Q GAIN WILD-TYPE 181  54    39
D14V7, multiclass
       clus
vv      7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  N0                 51               181
  N1                 17                54
  N2+N3              19                39
                   vv
clus                 M0  M1 M1B  MX
  7Q GAIN MUTATED    56   8   1  21
  7Q GAIN WILD-TYPE 191   9   2  74
D14V8, multiclass
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  M0               56               191
  M1                8                 9
  M1B               1                 2
  MX               21                74
                   vv
clus                  I  II III  IV
  7Q GAIN MUTATED    44  14  20   9
  7Q GAIN WILD-TYPE 154  67  45  11
D14V9, multiclass
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  I                44               154
  II               14                67
  III              20                45
  IV                9                11
D14V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED      6   84
  7Q GAIN WILD-TYPE   14  266
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO                6                14
  YES              84               266
D14V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  7Q GAIN MUTATED                                            31
  7Q GAIN WILD-TYPE                                          94
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  7Q GAIN MUTATED                                       23             19
  7Q GAIN WILD-TYPE                                     71             65
                   vv
clus                LIFELONG NON-SMOKER
  7Q GAIN MUTATED                    14
  7Q GAIN WILD-TYPE                  40
D14V12, multiclass
                                             clus
vv                                            7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              31                94
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   23                71
  CURRENT SMOKER                                           19                65
  LIFELONG NON-SMOKER                                      14                40
D14V13, continuous
                   vv
clus                 R0  R1  R2  RX
  7Q GAIN MUTATED    51   2   2   4
  7Q GAIN WILD-TYPE 167   7   2   9
D14V14, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  R0              51               167
  R1               2                 7
  R2               2                 2
  RX               4                 9

Clustering(15) Variable = 8p gain mutation analysis
D15V1, survival
                   sevent
clus2                 0   1
  8P GAIN MUTATED    32  10
  8P GAIN WILD-TYPE 214  75
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               42               289 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               10                75 
$`8P GAIN MUTATED`
TCGA-05-4417 TCGA-05-4432 TCGA-35-5375 TCGA-38-4629 TCGA-44-6147 TCGA-44-6778 
       14.93        25.02         8.68        28.37         7.76        36.49 
TCGA-44-7667 TCGA-44-7669 TCGA-44-8119 TCGA-49-4512 TCGA-50-5051 TCGA-50-5944 
       18.31        18.87         3.22        29.75        14.96        12.26 
TCGA-50-5946 TCGA-50-7109 TCGA-55-1596 TCGA-55-6969 TCGA-55-6970 TCGA-55-8615 
       11.47         8.38        45.17        40.70        15.25         0.49 
TCGA-55-A48Z TCGA-55-A494 TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1680 
        0.95         0.16        19.53        39.22        17.75        37.02 
TCGA-64-5779 TCGA-69-7973 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       16.67         7.56         0.46         1.32         4.01         1.25 
TCGA-78-7145 TCGA-78-7153 TCGA-78-7158 TCGA-78-7159 TCGA-78-7535 TCGA-91-6831 
       27.16        24.99         5.88        40.11        31.20         1.28 
TCGA-91-7771 TCGA-95-7948 TCGA-97-7547 TCGA-97-7553 TCGA-97-8172 TCGA-99-8025 
        1.02         4.34        47.18        43.76         5.95        14.04 

$`8P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 
       24.03        47.05         8.02        20.05         2.96         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       49.02        35.28        11.64        44.61         5.19        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        4.37        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        6.44         6.21         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        0.30         3.35         9.93         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       63.72        32.45        16.41         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-49-4486 
        1.64        17.46        17.59        13.74         8.52        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
        4.44        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
        6.21        33.37         0.72        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
        0.79        42.48         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        3.12         1.32         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 
        0.69         3.02         0.20         0.85         0.13         0.49 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        7.07         1.41         7.46         0.30         0.10         4.80 
TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        6.97         1.58         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DG TCGA-62-8399 
        1.02         1.58         0.03         0.92         5.29        68.81 
TCGA-62-A46O TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 
       47.77        56.81        20.65        39.09        55.40        44.38 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       83.84         0.10        30.44        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         5.06         6.12        22.68        13.61         4.24 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        6.05         2.30         2.93        12.56         3.25         2.50 
TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.21         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 
       15.35        20.42        17.06       163.10         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7154 TCGA-78-7155 
       20.58        35.93        21.86        39.48        19.50        38.50 
TCGA-78-7156 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       32.09        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       88.11        26.53         8.02        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        32.68        13.81         0.36         0.89         0.23 
TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
        1.12         0.62         0.33         0.79         1.41         0.85 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 
        0.76         0.69         0.53         1.12         1.45         0.56 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 
        1.28         1.22        41.33         0.03         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
       26.93         4.18         0.92         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 
        1.12         0.07         5.36         0.69         1.32        31.66 
TCGA-97-7552 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8174 
       48.53         8.65         5.95         0.59         0.72         5.36 
TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        4.80         0.49         8.22        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        5.03         3.72         9.44         9.27         7.82         6.97 
TCGA-L4-A4E6 
        2.50 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             0.16              0.03 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            47.18            223.96 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           14.945             8.050 
[1] "0.2 - 47.2 (14.9)" "0.0 - 224.0 (8.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D15V2, continuous
D15V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     22   25
  8P GAIN WILD-TYPE  181  142
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  FEMALE              22               181
  MALE                25               142
D15V4, continuous
[1] "Remove cluster labels:" "8P GAIN MUTATED"       
clus
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
                2                26 
       TCGA-35-4122        TCGA-35-4123        TCGA-55-7283        TCGA-55-7573 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7910        TCGA-55-7914        TCGA-64-1677 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-69-7974        TCGA-71-6725 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-75-5122        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7714        TCGA-86-7954        TCGA-91-6849 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-93-7348        TCGA-99-7458 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  8P GAIN MUTATED                            4
  8P GAIN WILD-TYPE                          7
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  8P GAIN MUTATED                                  11
  8P GAIN WILD-TYPE                                67
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8P GAIN MUTATED                                                   28
  8P GAIN WILD-TYPE                                                200
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  8P GAIN MUTATED                                            0
  8P GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  8P GAIN MUTATED                                               1
  8P GAIN WILD-TYPE                                            15
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  8P GAIN MUTATED                                0
  8P GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  8P GAIN MUTATED                                    0
  8P GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  8P GAIN MUTATED                              0                             3
  8P GAIN WILD-TYPE                            2                            13
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  8P GAIN MUTATED                                               0
  8P GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  8P GAIN MUTATED                                   0
  8P GAIN WILD-TYPE                                 7
D15V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  8P GAIN MUTATED     9  28   8   2
  8P GAIN WILD-TYPE 104 180  22  15
D15V6, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  T1               9               104
  T2              28               180
  T3               8                22
  T4               2                15
                   vv
clus                 N0  N1 N2+N3
  8P GAIN MUTATED    27   8    10
  8P GAIN WILD-TYPE 205  63    48
D15V7, multiclass
       clus
vv      8P GAIN MUTATED 8P GAIN WILD-TYPE
  N0                 27               205
  N1                  8                63
  N2+N3              10                48
                   vv
clus                 M0  M1 M1B  MX
  8P GAIN MUTATED    29   3   0  15
  8P GAIN WILD-TYPE 218  14   3  80
D15V8, multiclass
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  M0               29               218
  M1                3                14
  M1B               0                 3
  MX               15                80
                   vv
clus                  I  II III  IV
  8P GAIN MUTATED    23  11  10   3
  8P GAIN WILD-TYPE 175  70  55  17
D15V9, multiclass
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  I                23               175
  II               11                70
  III              10                55
  IV                3                17
D15V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      3   44
  8P GAIN WILD-TYPE   17  306
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO                3                17
  YES              44               306
D15V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  8P GAIN MUTATED                                            23
  8P GAIN WILD-TYPE                                         102
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  8P GAIN MUTATED                                       10             12
  8P GAIN WILD-TYPE                                     84             72
                   vv
clus                LIFELONG NON-SMOKER
  8P GAIN MUTATED                     1
  8P GAIN WILD-TYPE                  53
D15V12, multiclass
                                             clus
vv                                            8P GAIN MUTATED 8P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              23               102
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   10                84
  CURRENT SMOKER                                           12                72
  LIFELONG NON-SMOKER                                       1                53
D15V13, continuous
                   vv
clus                 R0  R1  R2  RX
  8P GAIN MUTATED    26   2   0   1
  8P GAIN WILD-TYPE 192   7   4  12
D15V14, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  R0              26               192
  R1               2                 7
  R2               0                 4
  RX               1                12

Clustering(16) Variable = 8q gain mutation analysis
D16V1, survival
                   sevent
clus2                 0   1
  8Q GAIN MUTATED    74  28
  8Q GAIN WILD-TYPE 172  57
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              102               229 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               28                57 
$`8Q GAIN MUTATED`
TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 TCGA-05-4417 TCGA-05-4432 TCGA-05-5420 
       37.02        47.05         8.02        14.93        25.02         1.02 
TCGA-05-5423 TCGA-35-5375 TCGA-38-4625 TCGA-38-4628 TCGA-38-4629 TCGA-38-4632 
        4.96         8.68        47.61        49.02        28.37        44.61 
TCGA-44-2656 TCGA-44-2668 TCGA-44-3918 TCGA-44-5644 TCGA-44-6144 TCGA-44-6147 
       19.10         8.09         6.44        16.37         0.30         7.76 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-8119 
       36.49        16.41         1.64        18.31        18.87         3.22 
TCGA-49-4488 TCGA-49-4512 TCGA-49-6761 TCGA-50-5051 TCGA-50-5066 TCGA-50-5933 
       28.57        29.75         0.03        14.96         9.76        77.88 
TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6593 TCGA-50-7109 
        9.37        12.26        11.47         3.88        11.05         8.38 
TCGA-53-7813 TCGA-55-1596 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 
       13.74        45.17        32.61         0.79        40.70        15.25 
TCGA-55-6972 TCGA-55-6982 TCGA-55-7907 TCGA-55-7914 TCGA-55-8094 TCGA-55-8097 
       48.49        32.71         0.53         0.10         0.13         0.49 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-A48Z TCGA-55-A490 TCGA-55-A494 
        6.97         0.49         1.58         0.95         1.58         0.16 
TCGA-55-A4DG TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1677 
        5.29        47.77        19.53        39.22        17.75        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5775 TCGA-64-5779 TCGA-67-3771 TCGA-69-7760 
       39.09        37.02         0.10        16.67         1.97         5.06 
TCGA-69-7973 TCGA-69-8255 TCGA-71-6725 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
        7.56         4.21         2.01         0.46         1.32         4.01 
TCGA-73-4677 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7152 
        1.25        17.06       163.10        27.16         5.65        39.48 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7161 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
        5.88        40.11         7.04        26.53        31.20         8.02 
TCGA-78-7539 TCGA-78-7542 TCGA-86-8585 TCGA-91-6828 TCGA-91-6831 TCGA-91-6847 
       10.75        10.55         1.12         1.22         1.28        26.93 
TCGA-91-7771 TCGA-93-8067 TCGA-95-7948 TCGA-97-7547 TCGA-97-7553 TCGA-97-7938 
        1.02         6.08         4.34        47.18        43.76         0.59 
TCGA-97-8172 TCGA-97-8179 TCGA-99-8025 TCGA-99-8032 TCGA-J2-8194 TCGA-J2-A4AD 
        5.95         0.49        14.04         1.45         3.72         9.44 

$`8Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 
       20.05         2.96         8.98        29.95        30.02        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5425 TCGA-05-5429 
       26.01        25.02        24.00        15.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 
        2.04         0.46         7.36         5.95        85.32        37.71 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       35.28        11.64         5.19        26.30         4.37        18.87 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       10.22         8.32         6.21         4.60         3.48         6.84 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7670 TCGA-44-7671 
       32.45         9.80         5.33         5.03        17.46        17.59 
TCGA-44-7672 TCGA-44-8117 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 
       13.74         8.52        76.21        28.11        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 
       46.72        14.07        32.84         8.81        29.46        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5049 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       48.82        25.81        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-6590 
       35.87        21.47         8.45        15.12         4.44        42.31 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 
       25.51        12.16         6.21        33.37         0.72        35.11 
TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 
       31.89        23.05        38.73        48.62         2.86         0.07 
TCGA-55-6968 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       42.48         0.92         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       45.34        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 
        1.02         1.02         0.79         1.78         0.62         6.48 
TCGA-55-7911 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8299 
        0.69         0.69         3.02         0.20         0.85         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8619 
        1.41         7.46         0.30         0.10         4.80         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A492 TCGA-55-A493 
        2.14         3.45         1.08         1.02         0.03         0.92 
TCGA-62-8399 TCGA-64-1676 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 
       68.81        56.81        55.40        44.38        83.84        30.44 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         0.99         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.89         0.69        13.87         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 
        4.24         6.05         2.30         2.93        12.56         3.25 
TCGA-69-8254 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.50        52.57        23.38        29.95        20.28        15.35 
TCGA-73-7498 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7153 
       20.42        19.27        20.58        35.93        21.86        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 
       19.50        38.50        32.09        22.29       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7537 TCGA-78-7540 TCGA-78-7633 TCGA-83-5908 
        8.48        88.11        53.33        28.96        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 
        0.36         0.89         0.23         1.12         0.62         0.33 
TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 
        0.79         1.41         0.85         0.76         0.69         0.53 
TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6829 TCGA-91-6830 TCGA-91-6835 
        1.45         0.56         1.28        41.33         0.03         1.15 
TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
        0.36         4.18         0.92         9.76         4.18         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7552 
        0.07         5.36         0.69         1.32        31.66        48.53 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7941 TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 
        8.65         5.95         0.72         5.36         4.80         8.22 
TCGA-99-8028 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
       15.06         5.56         5.03         9.27         7.82         6.97 
TCGA-L4-A4E6 
        2.50 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.03              0.03 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           163.10            223.96 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
            9.405             8.320 
[1] "0.0 - 163.1 (9.4)" "0.0 - 224.0 (8.3)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     60   57
  8Q GAIN WILD-TYPE  143  110
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  FEMALE              60               143
  MALE                57               110
D16V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  8Q GAIN MUTATED                            6
  8Q GAIN WILD-TYPE                          5
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  8Q GAIN MUTATED                                  26
  8Q GAIN WILD-TYPE                                52
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8Q GAIN MUTATED                                                   74
  8Q GAIN WILD-TYPE                                                154
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  8Q GAIN MUTATED                                            0
  8Q GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  8Q GAIN MUTATED                                               4
  8Q GAIN WILD-TYPE                                            12
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  8Q GAIN MUTATED                                0
  8Q GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  8Q GAIN MUTATED                                    0
  8Q GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  8Q GAIN MUTATED                              0                             5
  8Q GAIN WILD-TYPE                            2                            11
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  8Q GAIN MUTATED                                               2
  8Q GAIN WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  8Q GAIN MUTATED                                   0
  8Q GAIN WILD-TYPE                                 7
D16V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  8Q GAIN MUTATED    29  69  12   7
  8Q GAIN WILD-TYPE  84 139  18  10
D16V6, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  T1              29                84
  T2              69               139
  T3              12                18
  T4               7                10
                   vv
clus                 N0  N1 N2+N3
  8Q GAIN MUTATED    73  18    23
  8Q GAIN WILD-TYPE 159  53    35
D16V7, multiclass
       clus
vv      8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  N0                 73               159
  N1                 18                53
  N2+N3              23                35
                   vv
clus                 M0  M1 M1B  MX
  8Q GAIN MUTATED    72   7   1  36
  8Q GAIN WILD-TYPE 175  10   2  59
D16V8, multiclass
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  M0               72               175
  M1                7                10
  M1B               1                 2
  MX               36                59
                   vv
clus                  I  II III  IV
  8Q GAIN MUTATED    58  26  24   8
  8Q GAIN WILD-TYPE 140  55  41  12
D16V9, multiclass
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  I                58               140
  II               26                55
  III              24                41
  IV                8                12
D16V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED      5  112
  8Q GAIN WILD-TYPE   15  238
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO                5                15
  YES             112               238
D16V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  8Q GAIN MUTATED                                            44
  8Q GAIN WILD-TYPE                                          81
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  8Q GAIN MUTATED                                       26             33
  8Q GAIN WILD-TYPE                                     68             51
                   vv
clus                LIFELONG NON-SMOKER
  8Q GAIN MUTATED                    12
  8Q GAIN WILD-TYPE                  42
D16V12, multiclass
                                             clus
vv                                            8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              44                81
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   26                68
  CURRENT SMOKER                                           33                51
  LIFELONG NON-SMOKER                                      12                42
D16V13, continuous
                   vv
clus                 R0  R1  R2  RX
  8Q GAIN MUTATED    68   3   1   6
  8Q GAIN WILD-TYPE 150   6   3   7
D16V14, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  R0              68               150
  R1               3                 6
  R2               1                 3
  RX               6                 7

Clustering(17) Variable = 9p gain mutation analysis
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN MUTATED     9   1
  9P GAIN WILD-TYPE 237  84
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               10               321 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                1                84 
$`9P GAIN MUTATED`
TCGA-05-4427 TCGA-55-7903 TCGA-55-8514 TCGA-55-8620 TCGA-64-5775 TCGA-69-7973 
       26.01         0.62         6.97         2.14         0.10         7.56 
TCGA-69-7979 TCGA-78-7163 TCGA-95-7039 TCGA-95-7947 
        2.93       223.96         1.12         1.32 

$`9P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        3.48        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
       18.31        18.87        17.46        17.59        13.74         8.52 
TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        3.22        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
        6.21        33.37         0.72         8.38        35.11        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       13.74        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 
        1.28         1.02         1.02         0.79         1.78         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        6.48         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.85         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
        0.30         0.10         4.80         0.49         1.58         1.61 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
        0.92         0.16         5.29        68.81        47.77        19.53 
TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       39.22        17.75        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        44.38        83.84        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.89         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 
       13.61         4.24         6.05         2.30        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
       20.42        17.06       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      104.15         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 
        0.36         0.89         0.23         1.12         0.62         0.33 
TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 
        0.79         1.41         0.85         0.76         0.69         0.53 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        1.12         1.45         0.56         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        0.03         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7043 
        0.92         1.02         9.76         4.18         6.08         0.07 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        5.36         0.69         4.34        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 
       43.76         8.65         5.95         0.59         0.72         5.95 
TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        5.36         4.80         0.49         8.22        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        1.45         5.56         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        7.82         6.97         2.50 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             0.10              0.03 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           223.96            163.10 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
            2.535             8.680 
[1] "0.1 - 224.0 (2.5)" "0.0 - 163.1 (8.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
[1] "hr=" "3.6"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      5    6
  9P GAIN WILD-TYPE  198  161
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  FEMALE               5               198
  MALE                 6               161
D17V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  9P GAIN MUTATED                            1
  9P GAIN WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  9P GAIN MUTATED                                   5
  9P GAIN WILD-TYPE                                73
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9P GAIN MUTATED                                                    5
  9P GAIN WILD-TYPE                                                223
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  9P GAIN MUTATED                                            0
  9P GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  9P GAIN MUTATED                                               0
  9P GAIN WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  9P GAIN MUTATED                                0
  9P GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  9P GAIN MUTATED                                    0
  9P GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  9P GAIN MUTATED                              0                             0
  9P GAIN WILD-TYPE                            2                            16
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  9P GAIN MUTATED                                               0
  9P GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  9P GAIN MUTATED                                   0
  9P GAIN WILD-TYPE                                 7
D17V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  9P GAIN MUTATED     3   6   1   1
  9P GAIN WILD-TYPE 110 202  29  16
D17V6, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  T1               3               110
  T2               6               202
  T3               1                29
  T4               1                16
                   vv
clus                 N0  N1 N2+N3
  9P GAIN MUTATED     9   2     0
  9P GAIN WILD-TYPE 223  69    58
D17V7, multiclass
       clus
vv      9P GAIN MUTATED 9P GAIN WILD-TYPE
  N0                  9               223
  N1                  2                69
  N2+N3               0                58
                   vv
clus                 M0  M1 M1B  MX
  9P GAIN MUTATED     6   0   1   4
  9P GAIN WILD-TYPE 241  17   2  91
D17V8, multiclass
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  M0                6               241
  M1                0                17
  M1B               1                 2
  MX                4                91
                   vv
clus                  I  II III  IV
  9P GAIN MUTATED     7   2   1   1
  9P GAIN WILD-TYPE 191  79  64  19
D17V9, multiclass
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  I                 7               191
  II                2                79
  III               1                64
  IV                1                19
D17V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      0   11
  9P GAIN WILD-TYPE   20  339
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO                0                20
  YES              11               339
D17V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  9P GAIN MUTATED                                             6
  9P GAIN WILD-TYPE                                         119
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  9P GAIN MUTATED                                        1              4
  9P GAIN WILD-TYPE                                     93             80
                   vv
clus                LIFELONG NON-SMOKER
  9P GAIN MUTATED                     0
  9P GAIN WILD-TYPE                  54
D17V12, multiclass
                                             clus
vv                                            9P GAIN MUTATED 9P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               6               119
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                93
  CURRENT SMOKER                                            4                80
  LIFELONG NON-SMOKER                                       0                54
D17V13, continuous
                   vv
clus                 R0  R1  R2  RX
  9P GAIN MUTATED     7   0   0   1
  9P GAIN WILD-TYPE 211   9   4  12
D17V14, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  R0               7               211
  R1               0                 9
  R2               0                 4
  RX               1                12

Clustering(18) Variable = 9q gain mutation analysis
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN MUTATED     5   0
  9Q GAIN WILD-TYPE 241  85
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                5               326 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                0                85 
$`9Q GAIN MUTATED`
TCGA-05-4427 TCGA-55-8620 TCGA-78-7163 TCGA-91-6836 TCGA-95-7947 
       26.01         2.14       223.96         0.36         1.32 

$`9Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        3.48        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
       18.31        18.87        17.46        17.59        13.74         8.52 
TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        3.22        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
        6.21        33.37         0.72         8.38        35.11        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       13.74        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.28         1.02         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.53         6.48         0.69         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 
        0.20         0.85         0.13         0.49         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 
        7.46         0.30         0.10         4.80         6.97         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.58         1.61         3.45         1.08         1.02         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 
        1.58         0.03         0.92         0.16         5.29        68.81 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
       47.77        19.53        39.22        17.75        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
        5.06         6.12        22.68        13.61         4.24         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        6.05         2.30         2.93        12.56         3.25         2.50 
TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.21         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 
       15.35         0.46         1.32         4.01         1.25        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
       17.06       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 
        0.89         0.23         1.12         0.62         0.33         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 
        1.41         0.85         0.76         0.69         0.53         1.12 
TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        1.45         0.56         1.28         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.28         1.15        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        9.76         4.18         6.08         1.12         0.07         5.36 
TCGA-95-7944 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        0.69         4.34        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 
        8.65         5.95         0.59         0.72         5.95         5.36 
TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        4.80         0.49         8.22        14.04        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
        5.56         5.03         3.72         9.44         9.27         7.82 
TCGA-L4-A4E5 TCGA-L4-A4E6 
        6.97         2.50 

  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             0.36              0.03 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           223.96            163.10 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             2.14              8.50 
[1] "0.4 - 224.0 (2.1)" "0.0 - 163.1 (8.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
[1] "hr="     "3.4e+07"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      2    3
  9Q GAIN WILD-TYPE  201  164
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  FEMALE               2               201
  MALE                 3               164
D18V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  9Q GAIN MUTATED                            0
  9Q GAIN WILD-TYPE                         11
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  9Q GAIN MUTATED                                   2
  9Q GAIN WILD-TYPE                                76
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9Q GAIN MUTATED                                                    3
  9Q GAIN WILD-TYPE                                                225
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  9Q GAIN MUTATED                                            0
  9Q GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  9Q GAIN MUTATED                                               0
  9Q GAIN WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  9Q GAIN MUTATED                                0
  9Q GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  9Q GAIN MUTATED                                    0
  9Q GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  9Q GAIN MUTATED                              0                             0
  9Q GAIN WILD-TYPE                            2                            16
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  9Q GAIN MUTATED                                               0
  9Q GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  9Q GAIN MUTATED                                   0
  9Q GAIN WILD-TYPE                                 7
D18V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  9Q GAIN MUTATED     2   3   0   0
  9Q GAIN WILD-TYPE 111 205  30  17
D18V6, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  T1               2               111
  T2               3               205
  T3               0                30
  T4               0                17
                   vv
clus                 N0  N1 N2+N3
  9Q GAIN MUTATED     3   2     0
  9Q GAIN WILD-TYPE 229  69    58
D18V7, multiclass
       clus
vv      9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  N0                  3               229
  N1                  2                69
  N2+N3               0                58
                   vv
clus                 M0  M1 M1B  MX
  9Q GAIN MUTATED     3   0   1   1
  9Q GAIN WILD-TYPE 244  17   2  94
D18V8, multiclass
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  M0                3               244
  M1                0                17
  M1B               1                 2
  MX                1                94
                   vv
clus                  I  II III  IV
  9Q GAIN MUTATED     3   1   0   1
  9Q GAIN WILD-TYPE 195  80  65  19
D18V9, multiclass
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  I                 3               195
  II                1                80
  III               0                65
  IV                1                19
D18V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      0    5
  9Q GAIN WILD-TYPE   20  345
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO                0                20
  YES               5               345
D18V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  9Q GAIN MUTATED                                             3
  9Q GAIN WILD-TYPE                                         122
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  9Q GAIN MUTATED                                        1              1
  9Q GAIN WILD-TYPE                                     93             83
                   vv
clus                LIFELONG NON-SMOKER
  9Q GAIN MUTATED                     0
  9Q GAIN WILD-TYPE                  54
D18V12, multiclass
                                             clus
vv                                            9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3               122
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                93
  CURRENT SMOKER                                            1                83
  LIFELONG NON-SMOKER                                       0                54
D18V13, continuous
                   vv
clus                 R0  R1  R2  RX
  9Q GAIN MUTATED     4   0   0   0
  9Q GAIN WILD-TYPE 214   9   4  13
D18V14, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  R0               4               214
  R1               0                 9
  R2               0                 4
  RX               0                13

Clustering(19) Variable = 10p gain mutation analysis
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN MUTATED    27   9
  10P GAIN WILD-TYPE 219  76
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                36                295 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 9                 76 
$`10P GAIN MUTATED`
TCGA-05-4405 TCGA-05-4430 TCGA-38-4632 TCGA-44-7671 TCGA-44-8117 TCGA-49-4487 
       20.05        25.02        44.61        17.59         8.52        28.11 
TCGA-50-5051 TCGA-50-5068 TCGA-50-5946 TCGA-50-7109 TCGA-55-6970 TCGA-55-6972 
       14.96        49.28        11.47         8.38        15.25        48.49 
TCGA-55-7910 TCGA-55-8092 TCGA-55-8511 TCGA-55-8615 TCGA-55-8620 TCGA-62-A470 
        6.48         0.85         0.30         0.49         2.14        39.22 
TCGA-64-1678 TCGA-69-7763 TCGA-71-6725 TCGA-73-4670 TCGA-73-4677 TCGA-78-7149 
       39.09        22.68         2.01         0.46         1.25        35.93 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7161 TCGA-78-7542 TCGA-78-7633 TCGA-86-7711 
       19.50        38.50         7.04        10.55        32.68         0.89 
TCGA-91-6836 TCGA-93-8067 TCGA-95-7567 TCGA-97-7937 TCGA-97-8179 TCGA-99-8025 
        0.36         6.08         5.36         5.95         0.49        14.04 

$`10P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7672 TCGA-44-8119 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 
       17.46        13.74         3.22        76.21        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
        0.03        20.48        71.47        48.82        25.81         9.76 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 
        8.45        15.12         9.37         4.44        12.26        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 
        0.72        35.11        31.89        13.74        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       42.48        40.70         0.92         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        1.32         1.28         1.02         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.62         0.53         0.69         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.20         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 
        0.10         4.80         6.97         1.58         1.61         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        1.08         1.02         0.95         1.58         0.03         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A472 
        0.16         5.29        68.81        47.77        19.53        17.75 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       56.81        20.65        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
       13.87         5.06         6.12        13.61         4.24         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        6.05         2.30         2.93        12.56         3.25         2.50 
TCGA-69-8255 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        4.21        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4675 TCGA-73-4676 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
        1.32         4.01        20.42        17.06       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
        5.65        19.27        20.58        21.86        39.48        24.99 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 
       32.09         5.88        40.11        22.29       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-83-5908 TCGA-86-7701 TCGA-86-7713 TCGA-86-7953 
       10.75        28.96        13.81         0.36         0.23         1.12 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.62         0.33         0.79         1.41         0.85         0.76 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 
        0.69         0.53         1.12         1.45         0.56         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 
        1.22        41.33         0.03         1.28         1.15        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 
        4.18         0.92         1.02         9.76         4.18         1.12 
TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 
        0.07         0.69         1.32         4.34        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 
       48.53        43.76         8.65         0.59         0.72         5.95 
TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        5.36         4.80         8.22        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        5.03         3.72         9.44         9.27         7.82         6.97 
TCGA-L4-A4E6 
        2.50 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              0.30               0.03 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             49.28             223.96 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             11.01               8.32 
[1] "0.3 - 49.3 (11.0)" "0.0 - 224.0 (8.3)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"10P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"10P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"10P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED     16   25
  10P GAIN WILD-TYPE  187  142
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  FEMALE               16                187
  MALE                 25                142
D19V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  10P GAIN MUTATED                            2
  10P GAIN WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  10P GAIN MUTATED                                  11
  10P GAIN WILD-TYPE                                67
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10P GAIN MUTATED                                                   23
  10P GAIN WILD-TYPE                                                205
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  10P GAIN MUTATED                                            0
  10P GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  10P GAIN MUTATED                                               1
  10P GAIN WILD-TYPE                                            15
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  10P GAIN MUTATED                                0
  10P GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  10P GAIN MUTATED                                    1
  10P GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  10P GAIN MUTATED                              0                             3
  10P GAIN WILD-TYPE                            2                            13
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  10P GAIN MUTATED                                               0
  10P GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  10P GAIN MUTATED                                   0
  10P GAIN WILD-TYPE                                 7
D19V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  10P GAIN MUTATED     8  27   5   1
  10P GAIN WILD-TYPE 105 181  25  16
D19V6, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  T1                8                105
  T2               27                181
  T3                5                 25
  T4                1                 16
                    vv
clus                  N0  N1 N2+N3
  10P GAIN MUTATED    31   5     5
  10P GAIN WILD-TYPE 201  66    53
D19V7, multiclass
       clus
vv      10P GAIN MUTATED 10P GAIN WILD-TYPE
  N0                  31                201
  N1                   5                 66
  N2+N3                5                 53
                    vv
clus                  M0  M1 M1B  MX
  10P GAIN MUTATED    28   2   1  10
  10P GAIN WILD-TYPE 219  15   2  85
D19V8, multiclass
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  M0                28                219
  M1                 2                 15
  M1B                1                  2
  MX                10                 85
                    vv
clus                   I  II III  IV
  10P GAIN MUTATED    26   6   6   3
  10P GAIN WILD-TYPE 172  75  59  17
D19V9, multiclass
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  I                 26                172
  II                 6                 75
  III                6                 59
  IV                 3                 17
D19V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      1   40
  10P GAIN WILD-TYPE   19  310
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO                 1                 19
  YES               40                310
D19V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  10P GAIN MUTATED                                            22
  10P GAIN WILD-TYPE                                         103
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  10P GAIN MUTATED                                        7             11
  10P GAIN WILD-TYPE                                     87             73
                    vv
clus                 LIFELONG NON-SMOKER
  10P GAIN MUTATED                     0
  10P GAIN WILD-TYPE                  54
D19V12, multiclass
                                             clus
vv                                            10P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               22
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     7
  CURRENT SMOKER                                            11
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            10P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                103
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      87
  CURRENT SMOKER                                              73
  LIFELONG NON-SMOKER                                         54
D19V13, continuous
                    vv
clus                  R0  R1  R2  RX
  10P GAIN MUTATED    24   1   0   3
  10P GAIN WILD-TYPE 194   8   4  10
D19V14, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  R0               24                194
  R1                1                  8
  R2                0                  4
  RX                3                 10

Clustering(20) Variable = 10q gain mutation analysis
D20V1, survival
                    sevent
clus2                  0   1
  10Q GAIN MUTATED    15   5
  10Q GAIN WILD-TYPE 231  80
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                20                311 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 5                 80 
$`10Q GAIN MUTATED`
TCGA-05-4430 TCGA-44-6144 TCGA-44-7671 TCGA-49-4487 TCGA-50-5051 TCGA-50-5946 
       25.02         0.30        17.59        28.11        14.96        11.47 
TCGA-55-6970 TCGA-55-6972 TCGA-55-8615 TCGA-62-A470 TCGA-69-7763 TCGA-71-6725 
       15.25        48.49         0.49        39.22        22.68         2.01 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-78-7149 TCGA-78-7154 TCGA-78-7161 
        0.46         1.32         1.25        35.93        19.50         7.04 
TCGA-97-8179 TCGA-99-8025 
        0.49        14.04 

$`10Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48        16.37         6.84         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 
       18.87        17.46        13.74         8.52         3.22        76.21 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       12.16         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
        0.92         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.02         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        6.48         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.85         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 
        0.30         0.10         4.80         6.97         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 
        2.14         3.45         1.08         1.02         0.95         1.58 
TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O 
        0.03         0.92         0.16         5.29        68.81        47.77 
TCGA-62-A46P TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       19.53        17.75        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       13.61         4.24         7.56         6.05         2.30         2.93 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-73-4658 TCGA-73-4659 
       12.56         3.25         2.50         4.21        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4676 TCGA-73-7498 TCGA-73-7499 
       29.95        20.28        15.35         4.01        20.42        17.06 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 
      163.10        27.16         5.65        19.27        20.58        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       39.48        24.99        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
       22.29       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       31.20         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 
       32.68        13.81         0.36         0.89         0.23         1.12 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.62         0.33         0.79         1.41         0.85         0.76 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 
        0.69         0.53         1.12         1.45         0.56         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 
        6.08         1.12         0.07         5.36         0.69         1.32 
TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        4.34        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 
        5.95         0.59         0.72         5.95         5.36         4.80 
TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
        8.22        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        9.44         9.27         7.82         6.97         2.50 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              0.30               0.03 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             48.49             223.96 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             14.50               8.38 
[1] "0.3 - 48.5 (14.5)" "0.0 - 224.0 (8.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"10Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"10Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"10Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      8   15
  10Q GAIN WILD-TYPE  195  152
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  FEMALE                8                195
  MALE                 15                152
D20V4, continuous
[1] "Remove cluster labels:" "10Q GAIN MUTATED"      
clus
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 1                 27 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-69-7974 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4676         TCGA-75-5122 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-7701         TCGA-86-7711 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-7713         TCGA-86-7714         TCGA-86-7954 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  10Q GAIN MUTATED                            2
  10Q GAIN WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  10Q GAIN MUTATED                                   7
  10Q GAIN WILD-TYPE                                71
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10Q GAIN MUTATED                                                   10
  10Q GAIN WILD-TYPE                                                218
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  10Q GAIN MUTATED                                            0
  10Q GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  10Q GAIN MUTATED                                               1
  10Q GAIN WILD-TYPE                                            15
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  10Q GAIN MUTATED                                0
  10Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  10Q GAIN MUTATED                                    0
  10Q GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  10Q GAIN MUTATED                              0                             3
  10Q GAIN WILD-TYPE                            2                            13
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  10Q GAIN MUTATED                                               0
  10Q GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  10Q GAIN MUTATED                                   0
  10Q GAIN WILD-TYPE                                 7
D20V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  10Q GAIN MUTATED     6  11   5   1
  10Q GAIN WILD-TYPE 107 197  25  16
D20V6, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  T1                6                107
  T2               11                197
  T3                5                 25
  T4                1                 16
                    vv
clus                  N0  N1 N2+N3
  10Q GAIN MUTATED    17   1     5
  10Q GAIN WILD-TYPE 215  70    53
D20V7, multiclass
       clus
vv      10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  N0                  17                215
  N1                   1                 70
  N2+N3                5                 53
                    vv
clus                  M0  M1 M1B  MX
  10Q GAIN MUTATED    19   1   0   3
  10Q GAIN WILD-TYPE 228  16   3  92
D20V8, multiclass
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  M0                19                228
  M1                 1                 16
  M1B                0                  3
  MX                 3                 92
                    vv
clus                   I  II III  IV
  10Q GAIN MUTATED    14   1   7   1
  10Q GAIN WILD-TYPE 184  80  58  19
D20V9, multiclass
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  I                 14                184
  II                 1                 80
  III                7                 58
  IV                 1                 19
D20V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      1   22
  10Q GAIN WILD-TYPE   19  328
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                 1                 19
  YES               22                328
D20V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  10Q GAIN MUTATED                                            12
  10Q GAIN WILD-TYPE                                         113
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  10Q GAIN MUTATED                                        5              6
  10Q GAIN WILD-TYPE                                     89             78
                    vv
clus                 LIFELONG NON-SMOKER
  10Q GAIN MUTATED                     0
  10Q GAIN WILD-TYPE                  54
D20V12, multiclass
                                             clus
vv                                            10Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               12
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                             6
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            10Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                113
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      89
  CURRENT SMOKER                                              78
  LIFELONG NON-SMOKER                                         54
D20V13, continuous
                    vv
clus                  R0  R1  R2  RX
  10Q GAIN MUTATED    12   1   0   3
  10Q GAIN WILD-TYPE 206   8   4  10
D20V14, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  R0               12                206
  R1                1                  8
  R2                0                  4
  RX                3                 10

Clustering(21) Variable = 11p gain mutation analysis
D21V1, survival
                    sevent
clus2                  0   1
  11P GAIN MUTATED    23   6
  11P GAIN WILD-TYPE 223  79
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                29                302 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 6                 79 
$`11P GAIN MUTATED`
TCGA-05-4415 TCGA-05-4420 TCGA-05-4432 TCGA-05-5423 TCGA-05-5429 TCGA-38-4628 
        2.96        29.95        25.02         4.96         0.99        49.02 
TCGA-38-4629 TCGA-44-5645 TCGA-44-6779 TCGA-44-7660 TCGA-44-7669 TCGA-44-8119 
       28.37         6.84        16.41         5.33        18.87         3.22 
TCGA-55-1594 TCGA-55-6543 TCGA-55-6712 TCGA-55-8514 TCGA-55-8620 TCGA-55-A494 
       38.73         0.07         0.79         6.97         2.14         0.16 
TCGA-62-8399 TCGA-64-5775 TCGA-64-5779 TCGA-67-6215 TCGA-69-7973 TCGA-69-7974 
       68.81         0.10        16.67         0.89         7.56         6.05 
TCGA-71-6725 TCGA-73-4662 TCGA-78-7163 TCGA-95-7043 TCGA-97-7554 
        2.01        29.95       223.96         0.07         8.65 

$`11P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02        20.05        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5425 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        1.02         2.96         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4630 TCGA-38-4631 
        8.68        47.61        85.32        37.71        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48        16.37         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 
        9.80         5.03         1.64        18.31        17.46        17.59 
TCGA-44-7672 TCGA-44-8117 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       13.74         8.52        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       12.16         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       31.89        13.74        23.05        48.62        45.17         2.86 
TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
       32.61        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.69         0.10         0.69         3.02         0.20         0.85 
TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 
        0.13         0.49         7.07         1.41         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 
        0.10         4.80         0.49         1.58         1.61         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        1.08         1.02         0.95         1.58         0.03         0.92 
TCGA-55-A4DG TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 
        5.29        47.77        19.53        39.22        17.75        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        2.04         0.59         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
       22.68        13.61         4.24         2.30         2.93        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
        3.25         2.50         4.21        52.57        23.38        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 
       15.35         0.46         1.32         4.01         1.25        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
       17.06       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 
        0.89         0.23         1.12         0.62         0.33         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 
        1.41         0.85         0.76         0.69         0.53         1.12 
TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        1.45         0.56         1.28         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.28         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 
        1.02         9.76         4.18         6.08         1.12         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.69         1.32         4.34        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 
       43.76         5.95         0.59         0.72         5.95         5.36 
TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        4.80         0.49         8.22        14.04        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
        5.56         5.03         3.72         9.44         9.27         7.82 
TCGA-L4-A4E5 TCGA-L4-A4E6 
        6.97         2.50 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              0.07               0.03 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
            223.96             163.10 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              6.84               8.73 
[1] "0.1 - 224.0 (6.8)" "0.0 - 163.1 (8.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"11P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"11P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"11P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED     14   16
  11P GAIN WILD-TYPE  189  151
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  FEMALE               14                189
  MALE                 16                151
D21V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  11P GAIN MUTATED                            1
  11P GAIN WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  11P GAIN MUTATED                                   8
  11P GAIN WILD-TYPE                                70
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11P GAIN MUTATED                                                   17
  11P GAIN WILD-TYPE                                                211
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  11P GAIN MUTATED                                            1
  11P GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  11P GAIN MUTATED                                               0
  11P GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  11P GAIN MUTATED                                0
  11P GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  11P GAIN MUTATED                                    0
  11P GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  11P GAIN MUTATED                              0                             3
  11P GAIN WILD-TYPE                            2                            13
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  11P GAIN MUTATED                                               0
  11P GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  11P GAIN MUTATED                                   0
  11P GAIN WILD-TYPE                                 7
D21V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  11P GAIN MUTATED     6  18   3   2
  11P GAIN WILD-TYPE 107 190  27  15
D21V6, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  T1                6                107
  T2               18                190
  T3                3                 27
  T4                2                 15
                    vv
clus                  N0  N1 N2+N3
  11P GAIN MUTATED    15   7     7
  11P GAIN WILD-TYPE 217  64    51
D21V7, multiclass
       clus
vv      11P GAIN MUTATED 11P GAIN WILD-TYPE
  N0                  15                217
  N1                   7                 64
  N2+N3                7                 51
                    vv
clus                  M0  M1 M1B  MX
  11P GAIN MUTATED    18   1   1   8
  11P GAIN WILD-TYPE 229  16   2  87
D21V8, multiclass
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  M0                18                229
  M1                 1                 16
  M1B                1                  2
  MX                 8                 87
                    vv
clus                   I  II III  IV
  11P GAIN MUTATED    11   7   8   2
  11P GAIN WILD-TYPE 187  74  57  18
D21V9, multiclass
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  I                 11                187
  II                 7                 74
  III                8                 57
  IV                 2                 18
D21V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      2   28
  11P GAIN WILD-TYPE   18  322
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                 2                 18
  YES               28                322
D21V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  11P GAIN MUTATED                                            12
  11P GAIN WILD-TYPE                                         113
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  11P GAIN MUTATED                                        7              8
  11P GAIN WILD-TYPE                                     87             76
                    vv
clus                 LIFELONG NON-SMOKER
  11P GAIN MUTATED                     3
  11P GAIN WILD-TYPE                  51
D21V12, multiclass
                                             clus
vv                                            11P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               12
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     7
  CURRENT SMOKER                                             8
  LIFELONG NON-SMOKER                                        3
                                             clus
vv                                            11P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                113
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      87
  CURRENT SMOKER                                              76
  LIFELONG NON-SMOKER                                         51
D21V13, continuous
                    vv
clus                  R0  R1  R2  RX
  11P GAIN MUTATED    17   1   0   1
  11P GAIN WILD-TYPE 201   8   4  12
D21V14, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  R0               17                201
  R1                1                  8
  R2                0                  4
  RX                1                 12

Clustering(22) Variable = 11q gain mutation analysis
D22V1, survival
                    sevent
clus2                  0   1
  11Q GAIN MUTATED    32   8
  11Q GAIN WILD-TYPE 214  77
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                40                291 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 8                 77 
$`11Q GAIN MUTATED`
TCGA-05-4420 TCGA-05-4432 TCGA-05-5423 TCGA-05-5429 TCGA-38-4628 TCGA-38-4629 
       29.95        25.02         4.96         0.99        49.02        28.37 
TCGA-44-2656 TCGA-44-5645 TCGA-44-6774 TCGA-44-6779 TCGA-44-7660 TCGA-44-7662 
       19.10         6.84         5.42        16.41         5.33         1.64 
TCGA-44-7669 TCGA-44-8117 TCGA-44-8119 TCGA-50-5933 TCGA-53-7624 TCGA-55-1594 
       18.87         8.52         3.22        77.88        35.11        38.73 
TCGA-55-1596 TCGA-55-6543 TCGA-55-6712 TCGA-55-7910 TCGA-55-8514 TCGA-55-8620 
       45.17         0.07         0.79         6.48         6.97         2.14 
TCGA-55-A494 TCGA-62-8399 TCGA-64-5775 TCGA-64-5779 TCGA-67-6215 TCGA-69-7973 
        0.16        68.81         0.10        16.67         0.89         7.56 
TCGA-69-7974 TCGA-71-6725 TCGA-73-4666 TCGA-73-4676 TCGA-78-7154 TCGA-78-7155 
        6.05         2.01        20.28         4.01        19.50        38.50 
TCGA-78-7163 TCGA-86-8279 TCGA-91-6848 TCGA-95-7043 
      223.96         0.69         4.18         0.07 

$`11Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
        8.98        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       15.02         1.02         2.96         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4630 
        5.95         8.68        47.61        85.32        37.71        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61         5.19        26.30         4.37        18.87 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48        16.37         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 
        3.12         2.70        63.72        32.45        36.49         9.80 
TCGA-44-7661 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
        5.03        18.31        17.46        17.59        13.74        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        35.87        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1595 TCGA-55-5899 
        8.38        31.89        13.74        23.05        48.62         2.86 
TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
       32.61        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 
        1.02         0.79         1.78         0.62         0.53         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 
        0.10         0.69         3.02         0.20         0.85         0.13 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X 
        4.80         0.49         1.58         1.61         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DG 
        1.02         0.95         1.58         0.03         0.92         5.29 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
       47.77        19.53        39.22        17.75        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 
       39.09        55.40        37.02        44.38        83.84        30.44 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.59         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 
       13.61         4.24         2.30         2.93        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 
        2.50         4.21        52.57        23.38        29.95        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        0.46         1.32         1.25        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
       27.16         5.65        19.27        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       39.48        24.99        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
        7.04       104.15         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 
       13.81         0.36         0.89         0.23         1.12         0.62 
TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 
        0.33         0.79         1.41         0.85         0.76         0.53 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        1.12         1.45         0.56         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6849 
        0.03         1.28         1.15         0.36        26.93         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 
        1.02         9.76         4.18         6.08         1.12         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.69         1.32         4.34        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 
       43.76         8.65         5.95         0.59         0.72         5.95 
TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        5.36         4.80         0.49         8.22        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        1.45         5.56         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        7.82         6.97         2.50 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              0.07               0.03 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            223.96             163.10 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             6.905              8.680 
[1] "0.1 - 224.0 (6.9)" "0.0 - 163.1 (8.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"11Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"11Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"11Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED     18   24
  11Q GAIN WILD-TYPE  185  143
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  FEMALE               18                185
  MALE                 24                143
D22V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  11Q GAIN MUTATED                            1
  11Q GAIN WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  11Q GAIN MUTATED                                   7
  11Q GAIN WILD-TYPE                                71
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11Q GAIN MUTATED                                                   31
  11Q GAIN WILD-TYPE                                                197
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  11Q GAIN MUTATED                                            1
  11Q GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  11Q GAIN MUTATED                                               0
  11Q GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  11Q GAIN MUTATED                                0
  11Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  11Q GAIN MUTATED                                    0
  11Q GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  11Q GAIN MUTATED                              0                             2
  11Q GAIN WILD-TYPE                            2                            14
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  11Q GAIN MUTATED                                               0
  11Q GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  11Q GAIN MUTATED                                   0
  11Q GAIN WILD-TYPE                                 7
D22V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  11Q GAIN MUTATED     7  28   4   2
  11Q GAIN WILD-TYPE 106 180  26  15
D22V6, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  T1                7                106
  T2               28                180
  T3                4                 26
  T4                2                 15
                    vv
clus                  N0  N1 N2+N3
  11Q GAIN MUTATED    22  10     9
  11Q GAIN WILD-TYPE 210  61    49
D22V7, multiclass
       clus
vv      11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  N0                  22                210
  N1                  10                 61
  N2+N3                9                 49
                    vv
clus                  M0  M1 M1B  MX
  11Q GAIN MUTATED    26   3   1  10
  11Q GAIN WILD-TYPE 221  14   2  85
D22V8, multiclass
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  M0                26                221
  M1                 3                 14
  M1B                1                  2
  MX                10                 85
                    vv
clus                   I  II III  IV
  11Q GAIN MUTATED    15  11  10   4
  11Q GAIN WILD-TYPE 183  70  55  16
D22V9, multiclass
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  I                 15                183
  II                11                 70
  III               10                 55
  IV                 4                 16
D22V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      4   38
  11Q GAIN WILD-TYPE   16  312
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                 4                 16
  YES               38                312
D22V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  11Q GAIN MUTATED                                            19
  11Q GAIN WILD-TYPE                                         106
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  11Q GAIN MUTATED                                        5             13
  11Q GAIN WILD-TYPE                                     89             71
                    vv
clus                 LIFELONG NON-SMOKER
  11Q GAIN MUTATED                     4
  11Q GAIN WILD-TYPE                  50
D22V12, multiclass
                                             clus
vv                                            11Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               19
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                            13
  LIFELONG NON-SMOKER                                        4
                                             clus
vv                                            11Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                106
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      89
  CURRENT SMOKER                                              71
  LIFELONG NON-SMOKER                                         50
D22V13, continuous
                    vv
clus                  R0  R1  R2  RX
  11Q GAIN MUTATED    24   1   0   1
  11Q GAIN WILD-TYPE 194   8   4  12
D22V14, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  R0               24                194
  R1                1                  8
  R2                0                  4
  RX                1                 12

Clustering(23) Variable = 12p gain mutation analysis
D23V1, survival
                    sevent
clus2                  0   1
  12P GAIN MUTATED    29  11
  12P GAIN WILD-TYPE 217  74
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                40                291 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                11                 74 
$`12P GAIN MUTATED`
TCGA-05-4390 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4432 TCGA-44-3918 
       37.02        14.93         8.98        29.95        25.02         6.44 
TCGA-44-5643 TCGA-44-5644 TCGA-44-7669 TCGA-44-7670 TCGA-49-4510 TCGA-49-4512 
        3.48        16.37        18.87        17.46        29.46        29.75 
TCGA-50-5072 TCGA-50-5941 TCGA-55-1594 TCGA-55-1595 TCGA-55-6712 TCGA-55-6981 
        8.05         9.37        38.73        48.62         0.79        45.34 
TCGA-55-6985 TCGA-55-7726 TCGA-55-7728 TCGA-55-7910 TCGA-55-8094 TCGA-55-8615 
       40.54         1.02         0.79         6.48         0.13         0.49 
TCGA-55-A490 TCGA-55-A494 TCGA-62-A46O TCGA-62-A470 TCGA-64-1678 TCGA-64-5775 
        1.58         0.16        47.77        39.22        39.09         0.10 
TCGA-67-3774 TCGA-69-7973 TCGA-69-7980 TCGA-73-4670 TCGA-73-4675 TCGA-78-7145 
        0.59         7.56        12.56         0.46         1.32        27.16 
TCGA-78-7154 TCGA-78-7220 TCGA-86-7713 TCGA-91-6836 
       19.50        26.53         0.23         0.36 

$`12P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4424 TCGA-05-4426 
       47.05         8.02        20.05         2.96        30.02        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        2.96         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F 
       35.28        11.64        44.61         5.19        26.30         4.37 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       13.15         3.19         8.09        10.22         8.32         6.21 
TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 
       17.59        13.74         8.52         3.22        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        8.81        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
        9.76        49.28         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       21.47         8.45        15.12         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
       33.37         0.72         8.38        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6968 
       23.05        45.17         2.86         0.07        32.61        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6986 
        7.76         2.20        32.71        60.03        24.99        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 
        1.28         1.02         1.78         0.62         0.53         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8097 
        0.10         0.69         3.02         0.20         0.85         0.49 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        7.07         1.41         7.46         0.30         0.10         4.80 
TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        6.97         1.58         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DG TCGA-62-8399 
        1.02         0.95         0.03         0.92         5.29        68.81 
TCGA-62-A46P TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 
       19.53        17.75        56.81        20.65        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       44.38        83.84        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 
        0.99         1.97         0.59         2.04         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         5.06         6.12        22.68        13.61         4.24 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        6.05         2.30         2.93         3.25         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7146 
        4.01         1.25        20.42        17.06       163.10         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 
      104.15       223.96         8.48        88.11        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 
        0.36         0.89         1.12         0.62         0.33         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 
        1.41         0.85         0.76         0.69         0.53         1.12 
TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        1.45         0.56         1.28         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.28         1.15        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        9.76         4.18         6.08         1.12         0.07         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.69         1.32         4.34        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 
       43.76         8.65         5.95         0.59         0.72         5.95 
TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        5.36         4.80         0.49         8.22        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        1.45         5.56         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        7.82         6.97         2.50 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              0.10               0.03 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             48.62             223.96 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            10.965              8.380 
[1] "0.1 - 48.6 (11.0)" "0.0 - 224.0 (8.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"12P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"12P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"12P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     27   20
  12P GAIN WILD-TYPE  176  147
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  FEMALE               27                176
  MALE                 20                147
D23V4, continuous
[1] "Remove cluster labels:" "12P GAIN MUTATED"      
clus
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 2                 26 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1677         TCGA-64-1681 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-69-7974         TCGA-71-6725 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4676         TCGA-75-5122 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-7701         TCGA-86-7711 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-7714         TCGA-86-7954         TCGA-91-6849 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-93-7348         TCGA-99-7458 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  12P GAIN MUTATED                            1
  12P GAIN WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  12P GAIN MUTATED                                   9
  12P GAIN WILD-TYPE                                69
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12P GAIN MUTATED                                                   34
  12P GAIN WILD-TYPE                                                194
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  12P GAIN MUTATED                                            0
  12P GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  12P GAIN MUTATED                                               0
  12P GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  12P GAIN MUTATED                                1
  12P GAIN WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  12P GAIN MUTATED                                    0
  12P GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  12P GAIN MUTATED                              0                             1
  12P GAIN WILD-TYPE                            2                            15
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  12P GAIN MUTATED                                               0
  12P GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  12P GAIN MUTATED                                   1
  12P GAIN WILD-TYPE                                 6
D23V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  12P GAIN MUTATED     8  30   6   3
  12P GAIN WILD-TYPE 105 178  24  14
D23V6, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  T1                8                105
  T2               30                178
  T3                6                 24
  T4                3                 14
                    vv
clus                  N0  N1 N2+N3
  12P GAIN MUTATED    25  10    12
  12P GAIN WILD-TYPE 207  61    46
D23V7, multiclass
       clus
vv      12P GAIN MUTATED 12P GAIN WILD-TYPE
  N0                  25                207
  N1                  10                 61
  N2+N3               12                 46
                    vv
clus                  M0  M1 M1B  MX
  12P GAIN MUTATED    31   2   1  12
  12P GAIN WILD-TYPE 216  15   2  83
D23V8, multiclass
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  M0                31                216
  M1                 2                 15
  M1B                1                  2
  MX                12                 83
                    vv
clus                   I  II III  IV
  12P GAIN MUTATED    18  11  14   3
  12P GAIN WILD-TYPE 180  70  51  17
D23V9, multiclass
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  I                 18                180
  II                11                 70
  III               14                 51
  IV                 3                 17
D23V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      2   45
  12P GAIN WILD-TYPE   18  305
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO                 2                 18
  YES               45                305
D23V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  12P GAIN MUTATED                                            15
  12P GAIN WILD-TYPE                                         110
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  12P GAIN MUTATED                                       10             18
  12P GAIN WILD-TYPE                                     84             66
                    vv
clus                 LIFELONG NON-SMOKER
  12P GAIN MUTATED                     4
  12P GAIN WILD-TYPE                  50
D23V12, multiclass
                                             clus
vv                                            12P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               15
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    10
  CURRENT SMOKER                                            18
  LIFELONG NON-SMOKER                                        4
                                             clus
vv                                            12P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                110
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      84
  CURRENT SMOKER                                              66
  LIFELONG NON-SMOKER                                         50
D23V13, continuous
                    vv
clus                  R0  R1  R2  RX
  12P GAIN MUTATED    28   1   1   1
  12P GAIN WILD-TYPE 190   8   3  12
D23V14, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  R0               28                190
  R1                1                  8
  R2                1                  3
  RX                1                 12

Clustering(24) Variable = 12q gain mutation analysis
D24V1, survival
                    sevent
clus2                  0   1
  12Q GAIN MUTATED    25   8
  12Q GAIN WILD-TYPE 221  77
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                33                298 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 8                 77 
$`12Q GAIN MUTATED`
TCGA-05-4390 TCGA-05-4418 TCGA-05-4420 TCGA-05-4432 TCGA-44-3918 TCGA-44-5644 
       37.02         8.98        29.95        25.02         6.44        16.37 
TCGA-44-7669 TCGA-44-7670 TCGA-44-8119 TCGA-49-4510 TCGA-49-4512 TCGA-50-5072 
       18.87        17.46         3.22        29.46        29.75         8.05 
TCGA-50-5941 TCGA-55-1594 TCGA-55-1595 TCGA-55-7726 TCGA-55-7728 TCGA-55-7910 
        9.37        38.73        48.62         1.02         0.79         6.48 
TCGA-55-8615 TCGA-55-A490 TCGA-62-A46O TCGA-62-A470 TCGA-64-1678 TCGA-64-5779 
        0.49         1.58        47.77        39.22        39.09        16.67 
TCGA-67-3774 TCGA-69-7973 TCGA-69-7980 TCGA-69-8255 TCGA-73-4670 TCGA-73-4675 
        0.59         7.56        12.56         4.21         0.46         1.32 
TCGA-78-7145 TCGA-78-7220 TCGA-91-6836 
       27.16        26.53         0.36 

$`12Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4424 
       47.05         8.02        20.05         2.96        14.93        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       28.37        35.28        11.64        44.61         5.19        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        4.37        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       32.45        36.49        16.41         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-49-4486 
        1.64        18.31        17.59        13.74         8.52        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       32.84         8.81        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81         9.76        49.28         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47         8.45        15.12         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
        6.21        33.37         0.72         8.38        35.11        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       13.74        23.05        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 
        1.78         0.62         0.53         0.69         0.10         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 
        3.02         0.20         0.85         0.13         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 
        1.41         7.46         0.30         0.10         4.80         6.97 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 
        0.95         0.03         0.92         0.16         5.29        68.81 
TCGA-62-A46P TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 
       19.53        17.75        56.81        20.65        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 
       44.38        83.84         0.10        30.44        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 
        0.99         1.97         0.59         2.04         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         5.06         6.12        22.68        13.61         4.24 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-71-6725 
        6.05         2.30         2.93         3.25         2.50         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4676 
       52.57        23.38        29.95        20.28        15.35         4.01 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 
        1.25        20.42        17.06       163.10         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 
      104.15       223.96         8.48        88.11        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 
        0.36         0.89         0.23         1.12         0.62         0.33 
TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 
        0.79         1.41         0.85         0.76         0.69         0.53 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        1.12         1.45         0.56         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        0.03         1.28         1.15        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        1.02         9.76         4.18         6.08         1.12         0.07 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 
        5.36         0.69         1.32         4.34        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 
        5.95         5.36         4.80         0.49         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        9.27         7.82         6.97         2.50 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              0.36               0.03 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             48.62             223.96 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             12.56               8.35 
[1] "0.4 - 48.6 (12.6)" "0.0 - 224.0 (8.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"12Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"12Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"12Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D24V2, continuous
D24V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     22   17
  12Q GAIN WILD-TYPE  181  150
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  FEMALE               22                181
  MALE                 17                150
D24V4, continuous
[1] "Remove cluster labels:" "12Q GAIN MUTATED"      
clus
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 1                 27 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1677         TCGA-64-1681 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-69-7974         TCGA-71-6725 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4676         TCGA-75-5122 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-7701         TCGA-86-7711 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-7713         TCGA-86-7714         TCGA-86-7954 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  12Q GAIN MUTATED                            2
  12Q GAIN WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  12Q GAIN MUTATED                                   7
  12Q GAIN WILD-TYPE                                71
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12Q GAIN MUTATED                                                   26
  12Q GAIN WILD-TYPE                                                202
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  12Q GAIN MUTATED                                            0
  12Q GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  12Q GAIN MUTATED                                               0
  12Q GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  12Q GAIN MUTATED                                1
  12Q GAIN WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  12Q GAIN MUTATED                                    0
  12Q GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  12Q GAIN MUTATED                              0                             1
  12Q GAIN WILD-TYPE                            2                            15
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  12Q GAIN MUTATED                                               1
  12Q GAIN WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  12Q GAIN MUTATED                                   1
  12Q GAIN WILD-TYPE                                 6
D24V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  12Q GAIN MUTATED     7  24   6   2
  12Q GAIN WILD-TYPE 106 184  24  15
D24V6, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  T1                7                106
  T2               24                184
  T3                6                 24
  T4                2                 15
                    vv
clus                  N0  N1 N2+N3
  12Q GAIN MUTATED    21   8    10
  12Q GAIN WILD-TYPE 211  63    48
D24V7, multiclass
       clus
vv      12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  N0                  21                211
  N1                   8                 63
  N2+N3               10                 48
                    vv
clus                  M0  M1 M1B  MX
  12Q GAIN MUTATED    28   2   0   8
  12Q GAIN WILD-TYPE 219  15   3  87
D24V8, multiclass
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  M0                28                219
  M1                 2                 15
  M1B                0                  3
  MX                 8                 87
                    vv
clus                   I  II III  IV
  12Q GAIN MUTATED    15  11  11   2
  12Q GAIN WILD-TYPE 183  70  54  18
D24V9, multiclass
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  I                 15                183
  II                11                 70
  III               11                 54
  IV                 2                 18
D24V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      1   38
  12Q GAIN WILD-TYPE   19  312
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                 1                 19
  YES               38                312
D24V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  12Q GAIN MUTATED                                            11
  12Q GAIN WILD-TYPE                                         114
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  12Q GAIN MUTATED                                        8             17
  12Q GAIN WILD-TYPE                                     86             67
                    vv
clus                 LIFELONG NON-SMOKER
  12Q GAIN MUTATED                     3
  12Q GAIN WILD-TYPE                  51
D24V12, multiclass
                                             clus
vv                                            12Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               11
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     8
  CURRENT SMOKER                                            17
  LIFELONG NON-SMOKER                                        3
                                             clus
vv                                            12Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                114
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      86
  CURRENT SMOKER                                              67
  LIFELONG NON-SMOKER                                         51
D24V13, continuous
                    vv
clus                  R0  R1  R2  RX
  12Q GAIN MUTATED    23   1   1   1
  12Q GAIN WILD-TYPE 195   8   3  12
D24V14, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  R0               23                195
  R1                1                  8
  R2                1                  3
  RX                1                 12

Clustering(25) Variable = 13q gain mutation analysis
D25V1, survival
                    sevent
clus2                  0   1
  13Q GAIN MUTATED     7   4
  13Q GAIN WILD-TYPE 239  81
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                11                320 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 4                 81 
$`13Q GAIN MUTATED`
TCGA-38-4631 TCGA-44-7671 TCGA-53-7624 TCGA-55-7910 TCGA-64-1680 TCGA-67-3771 
       11.64        17.59        35.11         6.48        37.02         1.97 
TCGA-73-4677 TCGA-78-7149 TCGA-78-7220 TCGA-78-7537 TCGA-97-7547 
        1.25        35.93        26.53        53.33        47.18 

$`13Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        3.48        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.31        18.87        17.46        13.74         8.52         3.22 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
       33.37         0.72         8.38        31.89        13.74        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 
        1.02         0.79         1.78         0.62         0.53         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 
        0.10         0.69         3.02         0.20         0.85         0.13 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
        0.92         0.16         5.29        68.81        47.77        19.53 
TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       39.22        17.75        56.81        20.65        39.09        55.40 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
        4.24         7.56         6.05         2.30         2.93        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        3.25         2.50         4.21         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
       20.42        17.06       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       20.58        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7539 
      223.96         8.48        88.11        31.20         8.02        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       28.96        10.55        32.68        13.81         0.36         0.89 
TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 
        0.23         1.12         0.62         0.33         0.79         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 
        0.85         0.76         0.69         0.53         1.12         1.45 
TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.56         1.28         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.15         0.36        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        9.76         4.18         6.08         1.12         0.07         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 
        0.69         1.32         4.34        31.66        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 
        8.65         5.95         0.59         0.72         5.95         5.36 
TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        4.80         0.49         8.22        14.04        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
        5.56         5.03         3.72         9.44         9.27         7.82 
TCGA-L4-A4E5 TCGA-L4-A4E6 
        6.97         2.50 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              1.25               0.03 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             53.33             223.96 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             26.53               8.35 
[1] "1.2 - 53.3 (26.5)" "0.0 - 224.0 (8.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"13Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"13Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"13Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      7    7
  13Q GAIN WILD-TYPE  196  160
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  FEMALE                7                196
  MALE                  7                160
D25V4, continuous
[1] "Remove cluster labels:" "13Q GAIN MUTATED"      
clus
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 1                 27 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1677         TCGA-64-1681 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-69-7974         TCGA-71-6725 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4676         TCGA-75-5122 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-7701         TCGA-86-7711 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-7713         TCGA-86-7714         TCGA-86-7954 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  13Q GAIN MUTATED                            0
  13Q GAIN WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  13Q GAIN MUTATED                                   5
  13Q GAIN WILD-TYPE                                73
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  13Q GAIN MUTATED                                                    8
  13Q GAIN WILD-TYPE                                                220
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  13Q GAIN MUTATED                                            0
  13Q GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  13Q GAIN MUTATED                                               0
  13Q GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  13Q GAIN MUTATED                                0
  13Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  13Q GAIN MUTATED                                    0
  13Q GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  13Q GAIN MUTATED                              0                             1
  13Q GAIN WILD-TYPE                            2                            15
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  13Q GAIN MUTATED                                               0
  13Q GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  13Q GAIN MUTATED                                   0
  13Q GAIN WILD-TYPE                                 7
D25V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  13Q GAIN MUTATED     1  12   0   1
  13Q GAIN WILD-TYPE 112 196  30  16
D25V6, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  T1                1                112
  T2               12                196
  T3                0                 30
  T4                1                 16
                    vv
clus                  N0  N1 N2+N3
  13Q GAIN MUTATED    10   1     3
  13Q GAIN WILD-TYPE 222  70    55
D25V7, multiclass
       clus
vv      13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  N0                  10                222
  N1                   1                 70
  N2+N3                3                 55
                    vv
clus                  M0  M1 M1B  MX
  13Q GAIN MUTATED    11   2   0   1
  13Q GAIN WILD-TYPE 236  15   3  94
D25V8, multiclass
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  M0                11                236
  M1                 2                 15
  M1B                0                  3
  MX                 1                 94
                    vv
clus                   I  II III  IV
  13Q GAIN MUTATED     7   2   3   2
  13Q GAIN WILD-TYPE 191  79  62  18
D25V9, multiclass
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  I                  7                191
  II                 2                 79
  III                3                 62
  IV                 2                 18
D25V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      1   13
  13Q GAIN WILD-TYPE   19  337
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                 1                 19
  YES               13                337
D25V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  13Q GAIN MUTATED                                             3
  13Q GAIN WILD-TYPE                                         122
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  13Q GAIN MUTATED                                        5              5
  13Q GAIN WILD-TYPE                                     89             79
                    vv
clus                 LIFELONG NON-SMOKER
  13Q GAIN MUTATED                     1
  13Q GAIN WILD-TYPE                  53
D25V12, multiclass
                                             clus
vv                                            13Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                3
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                             5
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            13Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                122
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      89
  CURRENT SMOKER                                              79
  LIFELONG NON-SMOKER                                         53
D25V13, continuous
                    vv
clus                  R0  R1  R2  RX
  13Q GAIN MUTATED    12   0   0   0
  13Q GAIN WILD-TYPE 206   9   4  13
D25V14, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  R0               12                206
  R1                0                  9
  R2                0                  4
  RX                0                 13

Clustering(26) Variable = 14q gain mutation analysis
D26V1, survival
                    sevent
clus2                  0   1
  14Q GAIN MUTATED    22  10
  14Q GAIN WILD-TYPE 224  75
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                32                299 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                10                 75 
$`14Q GAIN MUTATED`
TCGA-05-4390 TCGA-35-5375 TCGA-38-4629 TCGA-44-2659 TCGA-44-6147 TCGA-44-6779 
       37.02         8.68        28.37        17.39         7.76        16.41 
TCGA-44-8119 TCGA-49-4486 TCGA-49-4488 TCGA-50-6590 TCGA-50-6591 TCGA-50-6594 
        3.22        76.21        28.57        42.31         3.88        12.16 
TCGA-50-7109 TCGA-55-5899 TCGA-55-6543 TCGA-55-6970 TCGA-55-6971 TCGA-55-7910 
        8.38         2.86         0.07        15.25         0.92         6.48 
TCGA-55-A490 TCGA-64-5774 TCGA-64-5775 TCGA-69-7973 TCGA-71-6725 TCGA-73-4677 
        1.58        83.84         0.10         7.56         2.01         1.25 
TCGA-73-7499 TCGA-78-7159 TCGA-78-7161 TCGA-91-6828 TCGA-91-6836 TCGA-91-6847 
       17.06        40.11         7.04         1.22         0.36        26.93 
TCGA-97-7546 TCGA-97-8179 
       31.66         0.49 

$`14Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         5.95        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       26.30         4.37        18.87        19.10        13.15         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        6.44         6.21         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        0.30         3.35         9.93         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       63.72        32.45        36.49         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-44-8117 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
        8.52        28.11        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6592 
       15.12         9.37         4.44        12.26        11.47        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 
       11.05         6.21        33.37         0.72        35.11        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6642 
       13.74        23.05        38.73        48.62        45.17        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
        0.79        42.48        40.70        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        3.12         1.32         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 
        1.78         0.62         0.53         0.69         0.10         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 
        3.02         0.20         0.85         0.13         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 
        1.41         7.46         0.30         0.10         4.80         6.97 
TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        0.49         1.58         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        1.02         0.95         0.03         0.92         0.16         5.29 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 
       68.81        47.77        19.53        39.22        17.75        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5778 
       20.65        39.09        55.40        37.02        44.38        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        2.04         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 
        6.12        22.68        13.61         4.24         6.05         2.30 
TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-73-4658 
        2.93        12.56         3.25         2.50         4.21        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-7498 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
        4.01        20.42       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 
       38.50        32.09         5.88        22.29       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 
        0.89         0.23         1.12         0.62         0.33         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 
        1.41         0.85         0.76         0.69         0.53         1.12 
TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        1.45         0.56         1.28        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
        1.15         4.18         0.92         1.02         9.76         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 
        6.08         1.12         0.07         5.36         0.69         1.32 
TCGA-95-7948 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
        4.34        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 
        0.59         0.72         5.95         5.36         4.80         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        9.44         9.27         7.82         6.97         2.50 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              0.07               0.03 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             83.84             223.96 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              8.07               8.52 
[1] "0.1 - 83.8 (8.1)"  "0.0 - 224.0 (8.5)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"14Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"14Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"14Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     24   14
  14Q GAIN WILD-TYPE  179  153
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  FEMALE               24                179
  MALE                 14                153
D26V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  14Q GAIN MUTATED                            2
  14Q GAIN WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  14Q GAIN MUTATED                                   5
  14Q GAIN WILD-TYPE                                73
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  14Q GAIN MUTATED                                                   26
  14Q GAIN WILD-TYPE                                                202
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  14Q GAIN MUTATED                                            1
  14Q GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  14Q GAIN MUTATED                                               0
  14Q GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  14Q GAIN MUTATED                                0
  14Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  14Q GAIN MUTATED                                    1
  14Q GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  14Q GAIN MUTATED                              0                             2
  14Q GAIN WILD-TYPE                            2                            14
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  14Q GAIN MUTATED                                               1
  14Q GAIN WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  14Q GAIN MUTATED                                   0
  14Q GAIN WILD-TYPE                                 7
D26V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  14Q GAIN MUTATED    14  19   4   1
  14Q GAIN WILD-TYPE  99 189  26  16
D26V6, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  T1               14                 99
  T2               19                189
  T3                4                 26
  T4                1                 16
                    vv
clus                  N0  N1 N2+N3
  14Q GAIN MUTATED    28   5     3
  14Q GAIN WILD-TYPE 204  66    55
D26V7, multiclass
       clus
vv      14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  N0                  28                204
  N1                   5                 66
  N2+N3                3                 55
                    vv
clus                  M0  M1 M1B  MX
  14Q GAIN MUTATED    24   1   0  12
  14Q GAIN WILD-TYPE 223  16   3  83
D26V8, multiclass
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  M0                24                223
  M1                 1                 16
  M1B                0                  3
  MX                12                 83
                    vv
clus                   I  II III  IV
  14Q GAIN MUTATED    23   9   4   1
  14Q GAIN WILD-TYPE 175  72  61  19
D26V9, multiclass
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  I                 23                175
  II                 9                 72
  III                4                 61
  IV                 1                 19
D26V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      0   38
  14Q GAIN WILD-TYPE   20  312
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                 0                 20
  YES               38                312
D26V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  14Q GAIN MUTATED                                            16
  14Q GAIN WILD-TYPE                                         109
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  14Q GAIN MUTATED                                       11              7
  14Q GAIN WILD-TYPE                                     83             77
                    vv
clus                 LIFELONG NON-SMOKER
  14Q GAIN MUTATED                     4
  14Q GAIN WILD-TYPE                  50
D26V12, multiclass
                                             clus
vv                                            14Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               16
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    11
  CURRENT SMOKER                                             7
  LIFELONG NON-SMOKER                                        4
                                             clus
vv                                            14Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                109
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      83
  CURRENT SMOKER                                              77
  LIFELONG NON-SMOKER                                         50
D26V13, continuous
                    vv
clus                  R0  R1  R2  RX
  14Q GAIN MUTATED    19   1   0   1
  14Q GAIN WILD-TYPE 199   8   4  12
D26V14, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  R0               19                199
  R1                1                  8
  R2                0                  4
  RX                1                 12

Clustering(27) Variable = 15q gain mutation analysis
D27V1, survival
                    sevent
clus2                  0   1
  15Q GAIN MUTATED     8   1
  15Q GAIN WILD-TYPE 238  84
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 9                322 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 1                 84 
$`15Q GAIN MUTATED`
TCGA-05-4420 TCGA-44-5645 TCGA-50-5944 TCGA-55-1594 TCGA-71-6725 TCGA-73-4670 
       29.95         6.84        12.26        38.73         2.01         0.46 
TCGA-78-7149 TCGA-78-7220 TCGA-78-7540 
       35.93        26.53        28.96 

$`15Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48        16.37         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        17.46        17.59        13.74         8.52         3.22 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 
        8.45        15.12         9.37         4.44        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
        0.72         8.38        35.11        31.89        13.74        23.05 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.13         3.12         1.32         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 
        0.10         0.69         3.02         0.20         0.85         0.13 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
        0.92         0.16         5.29        68.81        47.77        19.53 
TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       39.22        17.75        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
       22.68        13.61         4.24         7.56         6.05         2.30 
TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-73-4658 
        2.93        12.56         3.25         2.50         4.21        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28        15.35         1.32         4.01 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.25        20.42        17.06       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       19.27        20.58        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 
      104.15       223.96         8.48        88.11        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       53.33        10.75        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 
        0.89         0.23         1.12         0.62         0.33         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 
        1.41         0.85         0.76         0.69         0.53         1.12 
TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        1.45         0.56         1.28         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.28         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        1.02         9.76         4.18         6.08         1.12         0.07 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 
        5.36         0.69         1.32         4.34        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 
        5.95         5.36         4.80         0.49         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        9.27         7.82         6.97         2.50 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              0.46               0.03 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             38.73             223.96 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
            26.530              8.415 
[1] "0.5 - 38.7 (26.5)" "0.0 - 224.0 (8.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"15Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"15Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"15Q GAIN WILD-TYPE" 
[1] "hr=" "2.7"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      6    4
  15Q GAIN WILD-TYPE  197  163
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  FEMALE                6                197
  MALE                  4                163
D27V4, continuous
[1] "Remove cluster labels:" "15Q GAIN MUTATED"      
clus
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 1                 27 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-69-7974 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4676         TCGA-75-5122 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-7701         TCGA-86-7711 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-7713         TCGA-86-7714         TCGA-86-7954 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  15Q GAIN MUTATED                            1
  15Q GAIN WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  15Q GAIN MUTATED                                   4
  15Q GAIN WILD-TYPE                                74
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  15Q GAIN MUTATED                                                    3
  15Q GAIN WILD-TYPE                                                225
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  15Q GAIN MUTATED                                            1
  15Q GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  15Q GAIN MUTATED                                               0
  15Q GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  15Q GAIN MUTATED                                0
  15Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  15Q GAIN MUTATED                                    0
  15Q GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  15Q GAIN MUTATED                              0                             1
  15Q GAIN WILD-TYPE                            2                            15
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  15Q GAIN MUTATED                                               0
  15Q GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  15Q GAIN MUTATED                                   0
  15Q GAIN WILD-TYPE                                 7
D27V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  15Q GAIN MUTATED     2   6   0   1
  15Q GAIN WILD-TYPE 111 202  30  16
D27V6, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  T1                2                111
  T2                6                202
  T3                0                 30
  T4                1                 16
                    vv
clus                  N0  N1 N2+N3
  15Q GAIN MUTATED     7   0     2
  15Q GAIN WILD-TYPE 225  71    56
D27V7, multiclass
       clus
vv      15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  N0                   7                225
  N1                   0                 71
  N2+N3                2                 56
                    vv
clus                  M0  M1 M1B  MX
  15Q GAIN MUTATED     7   1   0   1
  15Q GAIN WILD-TYPE 240  16   3  94
D27V8, multiclass
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  M0                 7                240
  M1                 1                 16
  M1B                0                  3
  MX                 1                 94
                    vv
clus                   I  II III  IV
  15Q GAIN MUTATED     6   0   3   1
  15Q GAIN WILD-TYPE 192  81  62  19
D27V9, multiclass
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  I                  6                192
  II                 0                 81
  III                3                 62
  IV                 1                 19
D27V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      0   10
  15Q GAIN WILD-TYPE   20  340
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                 0                 20
  YES               10                340
D27V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  15Q GAIN MUTATED                                             1
  15Q GAIN WILD-TYPE                                         124
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  15Q GAIN MUTATED                                        2              5
  15Q GAIN WILD-TYPE                                     92             79
                    vv
clus                 LIFELONG NON-SMOKER
  15Q GAIN MUTATED                     1
  15Q GAIN WILD-TYPE                  53
D27V12, multiclass
                                             clus
vv                                            15Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                1
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     2
  CURRENT SMOKER                                             5
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            15Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                124
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      92
  CURRENT SMOKER                                              79
  LIFELONG NON-SMOKER                                         53
D27V13, continuous
                    vv
clus                  R0  R1  R2  RX
  15Q GAIN MUTATED     7   0   0   1
  15Q GAIN WILD-TYPE 211   9   4  12
D27V14, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  R0                7                211
  R1                0                  9
  R2                0                  4
  RX                1                 12

Clustering(28) Variable = 16p gain mutation analysis
D28V1, survival
                    sevent
clus2                  0   1
  16P GAIN MUTATED    33  12
  16P GAIN WILD-TYPE 213  73
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                45                286 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                12                 73 
$`16P GAIN MUTATED`
TCGA-05-4249 TCGA-05-4390 TCGA-05-5423 TCGA-38-4628 TCGA-38-4629 TCGA-44-2665 
       38.07        37.02         4.96        49.02        28.37        13.15 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6147 TCGA-44-6775 TCGA-44-6779 TCGA-44-7669 
       16.37         6.84         7.76         2.70        16.41        18.87 
TCGA-49-4490 TCGA-49-4505 TCGA-49-4512 TCGA-50-5933 TCGA-55-6980 TCGA-55-7281 
       12.66        14.07        29.75        77.88         2.20         0.59 
TCGA-55-7573 TCGA-55-7910 TCGA-55-8097 TCGA-55-A490 TCGA-64-1679 TCGA-64-1680 
        0.13         6.48         0.49         1.58        55.40        37.02 
TCGA-64-1681 TCGA-67-3772 TCGA-67-6217 TCGA-69-7760 TCGA-69-7980 TCGA-73-4668 
       44.38         0.59        13.87         5.06        12.56        15.35 
TCGA-73-4675 TCGA-78-7152 TCGA-78-7154 TCGA-78-7156 TCGA-78-7163 TCGA-78-7542 
        1.32        39.48        19.50        32.09       223.96        10.55 
TCGA-86-8075 TCGA-86-8278 TCGA-86-8279 TCGA-86-8668 TCGA-95-7947 TCGA-97-7546 
        1.41         0.76         0.69         1.45         1.32        31.66 
TCGA-97-7547 TCGA-97-8177 TCGA-97-8179 
       47.18         4.80         0.49 

$`16P GAIN WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        19.92        14.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         1.02         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F 
       35.28        11.64        44.61         5.19        26.30         4.37 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 
        4.60         3.48         0.30         3.35         9.93         3.12 
TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 
        5.42        63.72        32.45        36.49         9.80         5.33 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        5.03         1.64        18.31        17.46        17.59        13.74 
TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 
        8.52         3.22        76.21        28.11        28.57        35.54 
TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 
       46.72        32.84         8.81        29.46        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        35.87        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 
        8.38        35.11        31.89        13.74        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        5.46         7.76        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7574 TCGA-55-7576 
       40.54        71.05        38.47         1.12         3.12         1.32 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.28         1.02         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        0.53         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 
        0.85         0.13         7.07         1.41         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
        0.10         4.80         6.97         0.49         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 
        2.14         3.45         1.08         1.02         0.95         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
        0.92         0.16         5.29        68.81        47.77        19.53 
TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 
       39.22        17.75        56.81        20.65        39.09        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7761 
        1.97         2.04         0.59         0.89         0.69         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
       22.68        13.61         4.24         7.56         6.05         2.30 
TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
        2.93         3.25         2.50         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 
       23.38        29.95        20.28         0.46         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
       20.42        17.06       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7153 TCGA-78-7155 TCGA-78-7158 
       20.58        35.93        21.86        24.99        38.50         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 
       40.11        22.29         7.04       104.15         8.48        88.11 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       26.53        31.20         8.02        53.33        10.75        28.96 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 
       32.68        13.81         0.36         0.89         0.23         1.12 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8076 TCGA-86-8280 TCGA-86-8585 
        0.62         0.33         0.79         0.85         0.53         1.12 
TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.56         1.28         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.15         0.36        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        9.76         4.18         6.08         1.12         0.07         5.36 
TCGA-95-7944 TCGA-95-7948 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
        0.69         4.34        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-99-7458 TCGA-99-8025 
        0.59         0.72         5.95         5.36         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        9.27         7.82         6.97         2.50 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              0.13               0.03 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
            223.96             163.10 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             12.66               8.35 
[1] "0.1 - 224.0 (12.7)" "0.0 - 163.1 (8.4)" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
  "16P GAIN MUTATED"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"16P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
  "16P GAIN MUTATED"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"16P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
  "16P GAIN MUTATED"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"16P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED     27   22
  16P GAIN WILD-TYPE  176  145
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  FEMALE               27                176
  MALE                 22                145
D28V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  16P GAIN MUTATED                            3
  16P GAIN WILD-TYPE                          8
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  16P GAIN MUTATED                                   7
  16P GAIN WILD-TYPE                                71
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16P GAIN MUTATED                                                   34
  16P GAIN WILD-TYPE                                                194
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  16P GAIN MUTATED                                            1
  16P GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  16P GAIN MUTATED                                               1
  16P GAIN WILD-TYPE                                            15
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  16P GAIN MUTATED                                0
  16P GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  16P GAIN MUTATED                                    1
  16P GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  16P GAIN MUTATED                              0                             1
  16P GAIN WILD-TYPE                            2                            15
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  16P GAIN MUTATED                                               0
  16P GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  16P GAIN MUTATED                                   1
  16P GAIN WILD-TYPE                                 6
D28V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  16P GAIN MUTATED    13  28   5   2
  16P GAIN WILD-TYPE 100 180  25  15
D28V6, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  T1               13                100
  T2               28                180
  T3                5                 25
  T4                2                 15
                    vv
clus                  N0  N1 N2+N3
  16P GAIN MUTATED    28  12     7
  16P GAIN WILD-TYPE 204  59    51
D28V7, multiclass
       clus
vv      16P GAIN MUTATED 16P GAIN WILD-TYPE
  N0                  28                204
  N1                  12                 59
  N2+N3                7                 51
                    vv
clus                  M0  M1 M1B  MX
  16P GAIN MUTATED    34   3   0   9
  16P GAIN WILD-TYPE 213  14   3  86
D28V8, multiclass
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  M0                34                213
  M1                 3                 14
  M1B                0                  3
  MX                 9                 86
                    vv
clus                   I  II III  IV
  16P GAIN MUTATED    25  14   6   3
  16P GAIN WILD-TYPE 173  67  59  17
D28V9, multiclass
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  I                 25                173
  II                14                 67
  III                6                 59
  IV                 3                 17
D28V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      3   46
  16P GAIN WILD-TYPE   17  304
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                 3                 17
  YES               46                304
D28V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  16P GAIN MUTATED                                            15
  16P GAIN WILD-TYPE                                         110
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  16P GAIN MUTATED                                       18              4
  16P GAIN WILD-TYPE                                     76             80
                    vv
clus                 LIFELONG NON-SMOKER
  16P GAIN MUTATED                    11
  16P GAIN WILD-TYPE                  43
D28V12, multiclass
                                             clus
vv                                            16P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               15
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    18
  CURRENT SMOKER                                             4
  LIFELONG NON-SMOKER                                       11
                                             clus
vv                                            16P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                110
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      76
  CURRENT SMOKER                                              80
  LIFELONG NON-SMOKER                                         43
D28V13, continuous
                    vv
clus                  R0  R1  R2  RX
  16P GAIN MUTATED    28   0   0   3
  16P GAIN WILD-TYPE 190   9   4  10
D28V14, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  R0               28                190
  R1                0                  9
  R2                0                  4
  RX                3                 10

Clustering(29) Variable = 16q gain mutation analysis
D29V1, survival
                    sevent
clus2                  0   1
  16Q GAIN MUTATED    19   9
  16Q GAIN WILD-TYPE 227  76
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                28                303 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 9                 76 
$`16Q GAIN MUTATED`
TCGA-05-4249 TCGA-05-5423 TCGA-38-4629 TCGA-44-2665 TCGA-44-5645 TCGA-44-6147 
       38.07         4.96        28.37        13.15         6.84         7.76 
TCGA-44-6779 TCGA-49-4505 TCGA-49-4512 TCGA-50-5933 TCGA-55-6980 TCGA-55-8089 
       16.41        14.07        29.75        77.88         2.20         3.02 
TCGA-55-8097 TCGA-64-1676 TCGA-64-1681 TCGA-67-6217 TCGA-69-7760 TCGA-69-7980 
        0.49        56.81        44.38        13.87         5.06        12.56 
TCGA-73-4668 TCGA-78-7145 TCGA-78-7154 TCGA-78-7163 TCGA-78-7542 TCGA-86-8278 
       15.35        27.16        19.50       223.96        10.55         0.76 
TCGA-86-8279 TCGA-86-8668 TCGA-97-7547 TCGA-97-8179 
        0.69         1.45        47.18         0.49 

$`16Q GAIN WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         1.02         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
        3.39        15.78         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 
        6.44         6.21         4.60         3.48        16.37         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       32.45        36.49         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
       18.31        18.87        17.46        17.59        13.74         8.52 
TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        3.22        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 
       46.72        32.84         8.81        29.46        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        35.87        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 
        8.38        35.11        31.89        13.74        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        5.46         7.76        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        3.12         1.32         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-55-8087 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8299 TCGA-55-8301 
        0.69         0.20         0.85         0.13         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 
        7.46         0.30         0.10         4.80         6.97         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        0.95         1.58         0.03         0.92         0.16         5.29 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1677 
       68.81        47.77        19.53        39.22        17.75        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       39.09        55.40        37.02        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7761 TCGA-69-7763 
        2.04         0.59         0.89         0.69         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       13.61         4.24         7.56         6.05         2.30         2.93 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        3.25         2.50         4.21         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28         0.46         1.32         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
       20.42        17.06       163.10         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7155 TCGA-78-7156 
       35.93        21.86        39.48        24.99        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 
        5.88        40.11        22.29         7.04       104.15         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
       88.11        26.53        31.20         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       28.96        32.68        13.81         0.36         0.89         0.23 
TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
        1.12         0.62         0.33         0.79         1.41         0.85 
TCGA-86-8280 TCGA-86-8585 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        0.53         1.12         0.56         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        0.03         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        0.92         1.02         9.76         4.18         6.08         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 
        0.07         5.36         0.69         1.32         4.34        31.66 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        5.95         5.36         4.80         8.22        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        1.45         5.56         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        7.82         6.97         2.50 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              0.49               0.03 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
            223.96             163.10 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             13.51               8.32 
[1] "0.5 - 224.0 (13.5)" "0.0 - 163.1 (8.3)" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"16Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"16Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"16Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED     16   17
  16Q GAIN WILD-TYPE  187  150
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  FEMALE               16                187
  MALE                 17                150
D29V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  16Q GAIN MUTATED                            2
  16Q GAIN WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  16Q GAIN MUTATED                                   1
  16Q GAIN WILD-TYPE                                77
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16Q GAIN MUTATED                                                   25
  16Q GAIN WILD-TYPE                                                203
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  16Q GAIN MUTATED                                            1
  16Q GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  16Q GAIN MUTATED                                               1
  16Q GAIN WILD-TYPE                                            15
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  16Q GAIN MUTATED                                0
  16Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  16Q GAIN MUTATED                                    1
  16Q GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  16Q GAIN MUTATED                              0                             1
  16Q GAIN WILD-TYPE                            2                            15
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  16Q GAIN MUTATED                                               0
  16Q GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  16Q GAIN MUTATED                                   1
  16Q GAIN WILD-TYPE                                 6
D29V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  16Q GAIN MUTATED     9  18   3   2
  16Q GAIN WILD-TYPE 104 190  27  15
D29V6, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  T1                9                104
  T2               18                190
  T3                3                 27
  T4                2                 15
                    vv
clus                  N0  N1 N2+N3
  16Q GAIN MUTATED    19   9     3
  16Q GAIN WILD-TYPE 213  62    55
D29V7, multiclass
       clus
vv      16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  N0                  19                213
  N1                   9                 62
  N2+N3                3                 55
                    vv
clus                  M0  M1 M1B  MX
  16Q GAIN MUTATED    27   1   0   4
  16Q GAIN WILD-TYPE 220  16   3  91
D29V8, multiclass
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  M0                27                220
  M1                 1                 16
  M1B                0                  3
  MX                 4                 91
                    vv
clus                   I  II III  IV
  16Q GAIN MUTATED    19  10   3   1
  16Q GAIN WILD-TYPE 179  71  62  19
D29V9, multiclass
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  I                 19                179
  II                10                 71
  III                3                 62
  IV                 1                 19
D29V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      1   32
  16Q GAIN WILD-TYPE   19  318
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                 1                 19
  YES               32                318
D29V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  16Q GAIN MUTATED                                             9
  16Q GAIN WILD-TYPE                                         116
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  16Q GAIN MUTATED                                       11              5
  16Q GAIN WILD-TYPE                                     83             79
                    vv
clus                 LIFELONG NON-SMOKER
  16Q GAIN MUTATED                     7
  16Q GAIN WILD-TYPE                  47
D29V12, multiclass
                                             clus
vv                                            16Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                9
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    11
  CURRENT SMOKER                                             5
  LIFELONG NON-SMOKER                                        7
                                             clus
vv                                            16Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                116
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      83
  CURRENT SMOKER                                              79
  LIFELONG NON-SMOKER                                         47
D29V13, continuous
                    vv
clus                  R0  R1  R2  RX
  16Q GAIN MUTATED    22   1   0   0
  16Q GAIN WILD-TYPE 196   8   4  13
D29V14, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  R0               22                196
  R1                1                  8
  R2                0                  4
  RX                0                 13

Clustering(30) Variable = 17p gain mutation analysis
D30V1, survival
                    sevent
clus2                  0   1
  17P GAIN MUTATED    17   3
  17P GAIN WILD-TYPE 229  82
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                20                311 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 3                 82 
$`17P GAIN MUTATED`
TCGA-05-4382 TCGA-35-5375 TCGA-38-4628 TCGA-44-6148 TCGA-50-5935 TCGA-55-7907 
       19.92         8.68        49.02         3.12        21.47         0.53 
TCGA-55-8094 TCGA-55-8615 TCGA-55-A494 TCGA-64-1680 TCGA-69-7980 TCGA-73-4666 
        0.13         0.49         0.16        37.02        12.56        20.28 
TCGA-73-4675 TCGA-73-4676 TCGA-78-7149 TCGA-78-7220 TCGA-86-7713 TCGA-91-6835 
        1.32         4.01        35.93        26.53         0.23         1.15 
TCGA-95-7043 TCGA-97-8179 
        0.07         0.49 

$`17P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         5.95        47.61        85.32 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6774 
        6.84         0.30         3.35         9.93         7.76         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 
       17.59        13.74         8.52         3.22        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        77.88         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       35.11        31.89        13.74        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        3.12         1.32         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 
        1.78         0.62         6.48         0.69         0.10         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 
        3.02         0.20         0.85         0.49         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8616 
        7.46         0.30         0.10         4.80         6.97         1.58 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.61         2.14         3.45         1.08         1.02         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O 
        1.58         0.03         0.92         5.29        68.81        47.77 
TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
       19.53        39.22        17.75        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       55.40        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
       22.68        13.61         4.24         7.56         6.05         2.30 
TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
        2.93         3.25         2.50         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4677 TCGA-73-7498 
       23.38        29.95        15.35         0.46         1.25        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
       17.06       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
        8.48        88.11        31.20         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       28.96        10.55        32.68        13.81         0.36         0.89 
TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
        1.12         0.62         0.33         0.79         1.41         0.85 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 
        0.76         0.69         0.53         1.12         1.45         0.56 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6836 
        1.28         1.22        41.33         0.03         1.28         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
        6.08         1.12         5.36         0.69         1.32         4.34 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 
        0.59         0.72         5.95         5.36         4.80         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        9.44         9.27         7.82         6.97         2.50 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              0.07               0.03 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             49.02             223.96 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             3.565              8.520 
[1] "0.1 - 49.0 (3.6)"  "0.0 - 224.0 (8.5)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"17P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"17P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"17P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      8   13
  17P GAIN WILD-TYPE  195  154
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  FEMALE                8                195
  MALE                 13                154
D30V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  17P GAIN MUTATED                            1
  17P GAIN WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  17P GAIN MUTATED                                   5
  17P GAIN WILD-TYPE                                73
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17P GAIN MUTATED                                                   14
  17P GAIN WILD-TYPE                                                214
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  17P GAIN MUTATED                                            0
  17P GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  17P GAIN MUTATED                                               0
  17P GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  17P GAIN MUTATED                                0
  17P GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  17P GAIN MUTATED                                    0
  17P GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  17P GAIN MUTATED                              1                             0
  17P GAIN WILD-TYPE                            1                            16
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  17P GAIN MUTATED                                               0
  17P GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  17P GAIN MUTATED                                   0
  17P GAIN WILD-TYPE                                 7
D30V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  17P GAIN MUTATED     7  11   2   1
  17P GAIN WILD-TYPE 106 197  28  16
D30V6, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  T1                7                106
  T2               11                197
  T3                2                 28
  T4                1                 16
                    vv
clus                  N0  N1 N2+N3
  17P GAIN MUTATED    12   5     4
  17P GAIN WILD-TYPE 220  66    54
D30V7, multiclass
       clus
vv      17P GAIN MUTATED 17P GAIN WILD-TYPE
  N0                  12                220
  N1                   5                 66
  N2+N3                4                 54
                    vv
clus                  M0  M1 M1B  MX
  17P GAIN MUTATED    13   2   1   5
  17P GAIN WILD-TYPE 234  15   2  90
D30V8, multiclass
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  M0                13                234
  M1                 2                 15
  M1B                1                  2
  MX                 5                 90
                    vv
clus                   I  II III  IV
  17P GAIN MUTATED     9   4   5   3
  17P GAIN WILD-TYPE 189  77  60  17
D30V9, multiclass
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  I                  9                189
  II                 4                 77
  III                5                 60
  IV                 3                 17
D30V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      4   17
  17P GAIN WILD-TYPE   16  333
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                 4                 16
  YES               17                333
D30V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  17P GAIN MUTATED                                             7
  17P GAIN WILD-TYPE                                         118
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  17P GAIN MUTATED                                        7              3
  17P GAIN WILD-TYPE                                     87             81
                    vv
clus                 LIFELONG NON-SMOKER
  17P GAIN MUTATED                     3
  17P GAIN WILD-TYPE                  51
D30V12, multiclass
                                             clus
vv                                            17P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                7
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     7
  CURRENT SMOKER                                             3
  LIFELONG NON-SMOKER                                        3
                                             clus
vv                                            17P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                118
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      87
  CURRENT SMOKER                                              81
  LIFELONG NON-SMOKER                                         51
D30V13, continuous
                    vv
clus                  R0  R1  R2  RX
  17P GAIN MUTATED    14   0   0   2
  17P GAIN WILD-TYPE 204   9   4  11
D30V14, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  R0               14                204
  R1                0                  9
  R2                0                  4
  RX                2                 11

Clustering(31) Variable = 17q gain mutation analysis
D31V1, survival
                    sevent
clus2                  0   1
  17Q GAIN MUTATED    45  14
  17Q GAIN WILD-TYPE 201  71
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                59                272 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                14                 71 
$`17Q GAIN MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4424 TCGA-38-4628 TCGA-38-4629 TCGA-38-4632 
        3.98        19.92        30.02        49.02        28.37        44.61 
TCGA-44-3919 TCGA-44-6144 TCGA-44-6148 TCGA-44-6777 TCGA-44-7662 TCGA-44-7667 
        6.21         0.30         3.12        32.45         1.64        18.31 
TCGA-44-7670 TCGA-44-8117 TCGA-44-8119 TCGA-50-5935 TCGA-50-6591 TCGA-50-6593 
       17.46         8.52         3.22        21.47         3.88        11.05 
TCGA-50-6594 TCGA-55-1595 TCGA-55-5899 TCGA-55-7281 TCGA-55-7903 TCGA-55-7907 
       12.16        48.62         2.86         0.59         0.62         0.53 
TCGA-55-7911 TCGA-55-8094 TCGA-55-8514 TCGA-55-8615 TCGA-55-A490 TCGA-55-A494 
        0.69         0.13         6.97         0.49         1.58         0.16 
TCGA-62-A470 TCGA-64-1680 TCGA-67-6215 TCGA-69-7760 TCGA-69-7974 TCGA-69-7980 
       39.22        37.02         0.89         5.06         6.05        12.56 
TCGA-71-6725 TCGA-73-4662 TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 TCGA-73-7499 
        2.01        29.95        20.28         1.32         4.01        17.06 
TCGA-78-7145 TCGA-78-7147 TCGA-78-7149 TCGA-78-7161 TCGA-78-7220 TCGA-78-7539 
       27.16        19.27        35.93         7.04        26.53        10.75 
TCGA-78-7542 TCGA-78-7633 TCGA-86-7713 TCGA-86-8055 TCGA-86-8075 TCGA-86-8668 
       10.55        32.68         0.23         0.33         1.41         1.45 
TCGA-91-6835 TCGA-91-6836 TCGA-95-7043 TCGA-97-8179 TCGA-99-8025 
        1.15         0.36         0.07         0.49        14.04 

$`17Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       38.07        14.01        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       35.28        11.64         5.19        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 
        3.19         8.09        10.22         8.32         6.44         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        3.48        16.37         6.84         3.35         9.93         7.76 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        5.42         2.70        63.72        36.49        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
        5.33         5.03        18.87        17.59        13.74        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        35.87        77.88         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 
        9.37         4.44        12.26        11.47        42.31        25.51 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
        6.21        33.37         0.72         8.38        35.11        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       13.74        23.05        38.73        45.17         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 
       60.03        24.99        40.54        71.05        38.47         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.13         3.12         1.32         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7910 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.79         1.78         6.48         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.20         0.85         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        0.30         0.10         4.80         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 
        3.45         1.08         1.02         0.95         0.03         0.92 
TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A472 TCGA-64-1676 
        5.29        68.81        47.77        19.53        17.75        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       20.65        39.09        55.40        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 
        0.59         2.04         0.59         0.69        13.87         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7978 TCGA-69-7979 
       22.68        13.61         4.24         7.56         2.30         2.93 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-73-4658 TCGA-73-4659 TCGA-73-4668 
        3.25         2.50         4.21        52.57        23.38        15.35 
TCGA-73-4670 TCGA-73-4677 TCGA-73-7498 TCGA-78-7143 TCGA-78-7146 TCGA-78-7148 
        0.46         1.25        20.42       163.10         5.65        20.58 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
        5.88        40.11        22.29       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-83-5908 
       88.11        31.20         8.02        53.33        28.96        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7953 TCGA-86-8054 TCGA-86-8074 TCGA-86-8076 
        0.36         0.89         1.12         0.62         0.79         0.85 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8671 TCGA-86-A4P8 
        0.76         0.69         0.53         1.12         0.56         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6847 TCGA-91-6848 
        1.22        41.33         0.03         1.28        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        0.92         1.02         9.76         4.18         6.08         1.12 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 
        5.36         0.69         1.32         4.34        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 
        5.95         5.36         4.80         8.22        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
        5.56         5.03         3.72         9.44         9.27         7.82 
TCGA-L4-A4E5 TCGA-L4-A4E6 
        6.97         2.50 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              0.07               0.03 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             49.02             223.96 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              6.21               8.73 
[1] "0.1 - 49.0 (6.2)"  "0.0 - 224.0 (8.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"17Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"17Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"17Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED     35   28
  17Q GAIN WILD-TYPE  168  139
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  FEMALE               35                168
  MALE                 28                139
D31V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  17Q GAIN MUTATED                            3
  17Q GAIN WILD-TYPE                          8
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  17Q GAIN MUTATED                                  13
  17Q GAIN WILD-TYPE                                65
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17Q GAIN MUTATED                                                   42
  17Q GAIN WILD-TYPE                                                186
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  17Q GAIN MUTATED                                            1
  17Q GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  17Q GAIN MUTATED                                               0
  17Q GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  17Q GAIN MUTATED                                1
  17Q GAIN WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  17Q GAIN MUTATED                                    0
  17Q GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  17Q GAIN MUTATED                              1                             1
  17Q GAIN WILD-TYPE                            1                            15
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  17Q GAIN MUTATED                                               1
  17Q GAIN WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  17Q GAIN MUTATED                                   0
  17Q GAIN WILD-TYPE                                 7
D31V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  17Q GAIN MUTATED    19  31  11   2
  17Q GAIN WILD-TYPE  94 177  19  15
D31V6, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  T1               19                 94
  T2               31                177
  T3               11                 19
  T4                2                 15
                    vv
clus                  N0  N1 N2+N3
  17Q GAIN MUTATED    42  12     8
  17Q GAIN WILD-TYPE 190  59    50
D31V7, multiclass
       clus
vv      17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  N0                  42                190
  N1                  12                 59
  N2+N3                8                 50
                    vv
clus                  M0  M1 M1B  MX
  17Q GAIN MUTATED    39   7   1  15
  17Q GAIN WILD-TYPE 208  10   2  80
D31V8, multiclass
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  M0                39                208
  M1                 7                 10
  M1B                1                  2
  MX                15                 80
                    vv
clus                   I  II III  IV
  17Q GAIN MUTATED    30  14  10   8
  17Q GAIN WILD-TYPE 168  67  55  12
D31V9, multiclass
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  I                 30                168
  II                14                 67
  III               10                 55
  IV                 8                 12
D31V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      7   56
  17Q GAIN WILD-TYPE   13  294
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                 7                 13
  YES               56                294
D31V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  17Q GAIN MUTATED                                            24
  17Q GAIN WILD-TYPE                                         101
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  17Q GAIN MUTATED                                       13             15
  17Q GAIN WILD-TYPE                                     81             69
                    vv
clus                 LIFELONG NON-SMOKER
  17Q GAIN MUTATED                    10
  17Q GAIN WILD-TYPE                  44
D31V12, multiclass
                                             clus
vv                                            17Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               24
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    13
  CURRENT SMOKER                                            15
  LIFELONG NON-SMOKER                                       10
                                             clus
vv                                            17Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                101
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      81
  CURRENT SMOKER                                              69
  LIFELONG NON-SMOKER                                         44
D31V13, continuous
                    vv
clus                  R0  R1  R2  RX
  17Q GAIN MUTATED    34   4   1   5
  17Q GAIN WILD-TYPE 184   5   3   8
D31V14, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  R0               34                184
  R1                4                  5
  R2                1                  3
  RX                5                  8

Clustering(32) Variable = 18p gain mutation analysis
D32V1, survival
                    sevent
clus2                  0   1
  18P GAIN MUTATED    25   6
  18P GAIN WILD-TYPE 221  79
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                31                300 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 6                 79 
$`18P GAIN MUTATED`
TCGA-05-4420 TCGA-05-4424 TCGA-05-4430 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       29.95        30.02        25.02        13.74         8.52         3.22 
TCGA-50-6591 TCGA-50-7109 TCGA-55-6970 TCGA-55-A494 TCGA-62-8399 TCGA-64-5775 
        3.88         8.38        15.25         0.16        68.81         0.10 
TCGA-64-5779 TCGA-69-7764 TCGA-69-7973 TCGA-69-7980 TCGA-73-4675 TCGA-73-4676 
       16.67        13.61         7.56        12.56         1.32         4.01 
TCGA-78-7147 TCGA-78-7155 TCGA-78-7539 TCGA-78-7542 TCGA-86-7713 TCGA-86-8054 
       19.27        38.50        10.75        10.55         0.23         0.62 
TCGA-86-8055 TCGA-86-8075 TCGA-86-8585 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 
        0.33         1.41         1.12         0.69         1.32        31.66 
TCGA-97-8179 
        0.49 

$`18P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
        8.98        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       17.46        17.59        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       12.26        11.47        42.31        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
        6.21        33.37         0.72        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 
       32.61         0.79        42.48        40.70         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.69         0.10         0.69         3.02         0.20         0.85 
TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 
        0.13         0.49         7.07         1.41         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
        0.10         4.80         6.97         0.49         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 
        2.14         3.45         1.08         1.02         0.95         1.58 
TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DG TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 
        0.03         0.92         5.29        47.77        19.53        39.22 
TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
       17.75        56.81        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       44.38        83.84        30.44        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-69-7974 
       13.87         5.06         6.12        22.68         4.24         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 
        2.30         2.93         3.25         2.50         4.21         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        20.28        15.35         0.46 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.25        20.42        17.06       163.10        27.16         5.65 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      223.96         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7540 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       53.33        28.96        32.68        13.81         0.36         0.89 
TCGA-86-7953 TCGA-86-8074 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 
        1.12         0.79         0.85         0.76         0.69         0.53 
TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        1.45         0.56         1.28         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.28         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        1.02         9.76         4.18         6.08         1.12         0.07 
TCGA-95-7567 TCGA-95-7948 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        5.36         4.34        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 
        5.95         0.59         0.72         5.95         5.36         4.80 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
        8.22        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        3.72         9.44         9.27         7.82         6.97         2.50 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              0.10               0.03 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             68.81             223.96 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             8.380              8.565 
[1] "0.1 - 68.8 (8.4)"  "0.0 - 224.0 (8.6)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"18P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"18P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"18P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED     13   20
  18P GAIN WILD-TYPE  190  147
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  FEMALE               13                190
  MALE                 20                147
D32V4, continuous
[1] "Remove cluster labels:" "18P GAIN MUTATED"      
clus
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 2                 26 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-69-7974 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4659         TCGA-73-4662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-75-5122 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-7701         TCGA-86-7711 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-7714         TCGA-86-7954         TCGA-91-6849 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-93-7348         TCGA-99-7458 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  18P GAIN MUTATED                            4
  18P GAIN WILD-TYPE                          7
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  18P GAIN MUTATED                                   8
  18P GAIN WILD-TYPE                                70
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18P GAIN MUTATED                                                   18
  18P GAIN WILD-TYPE                                                210
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  18P GAIN MUTATED                                            0
  18P GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  18P GAIN MUTATED                                               0
  18P GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  18P GAIN MUTATED                                0
  18P GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  18P GAIN MUTATED                                    0
  18P GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  18P GAIN MUTATED                              0                             2
  18P GAIN WILD-TYPE                            2                            14
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  18P GAIN MUTATED                                               1
  18P GAIN WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  18P GAIN MUTATED                                   0
  18P GAIN WILD-TYPE                                 7
D32V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  18P GAIN MUTATED     9  19   3   2
  18P GAIN WILD-TYPE 104 189  27  15
D32V6, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  T1                9                104
  T2               19                189
  T3                3                 27
  T4                2                 15
                    vv
clus                  N0  N1 N2+N3
  18P GAIN MUTATED    24   6     3
  18P GAIN WILD-TYPE 208  65    55
D32V7, multiclass
       clus
vv      18P GAIN MUTATED 18P GAIN WILD-TYPE
  N0                  24                208
  N1                   6                 65
  N2+N3                3                 55
                    vv
clus                  M0  M1 M1B  MX
  18P GAIN MUTATED    28   1   0   4
  18P GAIN WILD-TYPE 219  16   3  91
D32V8, multiclass
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  M0                28                219
  M1                 1                 16
  M1B                0                  3
  MX                 4                 91
                    vv
clus                   I  II III  IV
  18P GAIN MUTATED    19   6   7   1
  18P GAIN WILD-TYPE 179  75  58  19
D32V9, multiclass
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  I                 19                179
  II                 6                 75
  III                7                 58
  IV                 1                 19
D32V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      1   32
  18P GAIN WILD-TYPE   19  318
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                 1                 19
  YES               32                318
D32V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  18P GAIN MUTATED                                            11
  18P GAIN WILD-TYPE                                         114
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  18P GAIN MUTATED                                        7             10
  18P GAIN WILD-TYPE                                     87             74
                    vv
clus                 LIFELONG NON-SMOKER
  18P GAIN MUTATED                     5
  18P GAIN WILD-TYPE                  49
D32V12, multiclass
                                             clus
vv                                            18P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               11
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     7
  CURRENT SMOKER                                            10
  LIFELONG NON-SMOKER                                        5
                                             clus
vv                                            18P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                114
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      87
  CURRENT SMOKER                                              74
  LIFELONG NON-SMOKER                                         49
D32V13, continuous
                    vv
clus                  R0  R1  R2  RX
  18P GAIN MUTATED    20   1   0   1
  18P GAIN WILD-TYPE 198   8   4  12
D32V14, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  R0               20                198
  R1                1                  8
  R2                0                  4
  RX                1                 12

Clustering(33) Variable = 18q gain mutation analysis
D33V1, survival
                    sevent
clus2                  0   1
  18Q GAIN MUTATED    16   4
  18Q GAIN WILD-TYPE 230  81
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                20                311 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 4                 81 
$`18Q GAIN MUTATED`
TCGA-05-4390 TCGA-05-4420 TCGA-44-6778 TCGA-44-8119 TCGA-50-6591 TCGA-55-6970 
       37.02        29.95        36.49         3.22         3.88        15.25 
TCGA-55-A494 TCGA-62-8399 TCGA-64-1678 TCGA-64-5779 TCGA-69-7764 TCGA-69-7973 
        0.16        68.81        39.09        16.67        13.61         7.56 
TCGA-69-7980 TCGA-73-4675 TCGA-73-4676 TCGA-78-7155 TCGA-78-7542 TCGA-86-7713 
       12.56         1.32         4.01        38.50        10.55         0.23 
TCGA-86-8075 TCGA-97-7546 
        1.41        31.66 

$`18Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
        5.19        26.30         4.37        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 
        3.12         5.42         2.70        63.72        32.45        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        9.80         5.33         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-49-4486 TCGA-49-4487 
       17.46        17.59        13.74         8.52        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 
        9.37         4.44        12.26        11.47        42.31        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       35.11        31.89        13.74        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       40.70         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        1.32         1.28         1.02         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 
        0.62         0.53         6.48         0.69         0.10         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 
        3.02         0.20         0.85         0.13         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 
        1.41         7.46         0.30         0.10         4.80         6.97 
TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        0.49         1.58         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DG 
        1.02         0.95         1.58         0.03         0.92         5.29 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
       47.77        19.53        39.22        17.75        56.81        20.65 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       55.40        37.02        44.38        83.84         0.10        30.44 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 
       22.68         4.24         6.05         2.30         2.93         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
       20.28        15.35         0.46         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
      163.10        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 
       21.86        39.48        24.99        19.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
       88.11        26.53        31.20         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7953 
       28.96        32.68        13.81         0.36         0.89         1.12 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        0.62         0.33         0.79         0.85         0.76         0.69 
TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 
        0.53         1.12         1.45         0.56         1.28         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         0.03         1.28         1.15         0.36        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        4.18         0.92         1.02         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
        1.12         0.07         5.36         0.69         1.32         4.34 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 
        0.72         5.95         5.36         4.80         0.49         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        9.44         9.27         7.82         6.97         2.50 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              0.16               0.03 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             68.81             223.96 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
            13.085              8.380 
[1] "0.2 - 68.8 (13.1)" "0.0 - 224.0 (8.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"18Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"18Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"18Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      9   11
  18Q GAIN WILD-TYPE  194  156
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  FEMALE                9                194
  MALE                 11                156
D33V4, continuous
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 2                 26 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-69-7974 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4659         TCGA-73-4662 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4668         TCGA-75-5122 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-7701         TCGA-86-7711 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-7714         TCGA-86-7954         TCGA-91-6849 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-93-7348         TCGA-99-7458 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  18Q GAIN MUTATED                            2
  18Q GAIN WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  18Q GAIN MUTATED                                   4
  18Q GAIN WILD-TYPE                                74
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18Q GAIN MUTATED                                                   12
  18Q GAIN WILD-TYPE                                                216
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  18Q GAIN MUTATED                                            0
  18Q GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  18Q GAIN MUTATED                                               0
  18Q GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  18Q GAIN MUTATED                                0
  18Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  18Q GAIN MUTATED                                    0
  18Q GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  18Q GAIN MUTATED                              0                             2
  18Q GAIN WILD-TYPE                            2                            14
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  18Q GAIN MUTATED                                               0
  18Q GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  18Q GAIN MUTATED                                   0
  18Q GAIN WILD-TYPE                                 7
D33V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  18Q GAIN MUTATED     4  14   2   0
  18Q GAIN WILD-TYPE 109 194  28  17
D33V6, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  T1                4                109
  T2               14                194
  T3                2                 28
  T4                0                 17
                    vv
clus                  N0  N1 N2+N3
  18Q GAIN MUTATED    15   2     3
  18Q GAIN WILD-TYPE 217  69    55
D33V7, multiclass
       clus
vv      18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  N0                  15                217
  N1                   2                 69
  N2+N3                3                 55
                    vv
clus                  M0  M1 M1B  MX
  18Q GAIN MUTATED    15   1   0   4
  18Q GAIN WILD-TYPE 232  16   3  91
D33V8, multiclass
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  M0                15                232
  M1                 1                 16
  M1B                0                  3
  MX                 4                 91
                    vv
clus                   I  II III  IV
  18Q GAIN MUTATED    12   3   4   1
  18Q GAIN WILD-TYPE 186  78  61  19
D33V9, multiclass
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  I                 12                186
  II                 3                 78
  III                4                 61
  IV                 1                 19
D33V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      1   19
  18Q GAIN WILD-TYPE   19  331
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                 1                 19
  YES               19                331
D33V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  18Q GAIN MUTATED                                            10
  18Q GAIN WILD-TYPE                                         115
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  18Q GAIN MUTATED                                        4              3
  18Q GAIN WILD-TYPE                                     90             81
                    vv
clus                 LIFELONG NON-SMOKER
  18Q GAIN MUTATED                     3
  18Q GAIN WILD-TYPE                  51
D33V12, multiclass
                                             clus
vv                                            18Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               10
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             3
  LIFELONG NON-SMOKER                                        3
                                             clus
vv                                            18Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                115
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      90
  CURRENT SMOKER                                              81
  LIFELONG NON-SMOKER                                         51
D33V13, continuous
                    vv
clus                  R0  R1  R2  RX
  18Q GAIN MUTATED    11   0   0   1
  18Q GAIN WILD-TYPE 207   9   4  12
D33V14, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  R0               11                207
  R1                0                  9
  R2                0                  4
  RX                1                 12

Clustering(34) Variable = 19p gain mutation analysis
D34V1, survival
                    sevent
clus2                  0   1
  19P GAIN MUTATED     6   0
  19P GAIN WILD-TYPE 240  85
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 6                325 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 0                 85 
$`19P GAIN MUTATED`
TCGA-44-2662 TCGA-44-2665 TCGA-53-7624 TCGA-55-8620 TCGA-69-8253 TCGA-73-4675 
       15.78        13.15        35.11         2.14         3.25         1.32 

$`19P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61         5.19        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2666 TCGA-44-2668 
       19.10        13.15        17.39         3.39         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        17.46        17.59        13.74         8.52         3.22 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
       33.37         0.72         8.38        31.89        13.74        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.69         0.10         0.69         3.02         0.20         0.85 
TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 
        0.13         0.49         7.07         1.41         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
        0.10         4.80         6.97         0.49         1.58         1.61 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
        0.92         0.16         5.29        68.81        47.77        19.53 
TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       39.22        17.75        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
       22.68        13.61         4.24         7.56         6.05         2.30 
TCGA-69-7979 TCGA-69-7980 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
        2.93        12.56         2.50         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 
       23.38        29.95        20.28        15.35         0.46         4.01 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.25        20.42        17.06       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
        7.04       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       31.20         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 
       32.68        13.81         0.36         0.89         0.23         1.12 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.62         0.33         0.79         1.41         0.85         0.76 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 
        0.69         0.53         1.12         1.45         0.56         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 
        6.08         1.12         0.07         5.36         0.69         1.32 
TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        4.34        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 
        5.95         0.59         0.72         5.95         5.36         4.80 
TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        0.49         8.22        14.04        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        5.03         3.72         9.44         9.27         7.82         6.97 
TCGA-L4-A4E6 
        2.50 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              1.32               0.03 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             35.11             223.96 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              8.20               8.48 
[1] "1.3 - 35.1 (8.2)"  "0.0 - 224.0 (8.5)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"19P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"19P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"19P GAIN WILD-TYPE" 
[1] "hr="     "9100000"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      3    3
  19P GAIN WILD-TYPE  200  164
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  FEMALE                3                200
  MALE                  3                164
D34V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  19P GAIN MUTATED                            0
  19P GAIN WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  19P GAIN MUTATED                                   1
  19P GAIN WILD-TYPE                                77
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19P GAIN MUTATED                                                    5
  19P GAIN WILD-TYPE                                                223
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  19P GAIN MUTATED                                            0
  19P GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  19P GAIN MUTATED                                               0
  19P GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  19P GAIN MUTATED                                0
  19P GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  19P GAIN MUTATED                                    0
  19P GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  19P GAIN MUTATED                              0                             0
  19P GAIN WILD-TYPE                            2                            16
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  19P GAIN MUTATED                                               0
  19P GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  19P GAIN MUTATED                                   0
  19P GAIN WILD-TYPE                                 7
D34V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  19P GAIN MUTATED     2   3   1   0
  19P GAIN WILD-TYPE 111 205  29  17
D34V6, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  T1                2                111
  T2                3                205
  T3                1                 29
  T4                0                 17
                    vv
clus                  N0  N1 N2+N3
  19P GAIN MUTATED     2   4     0
  19P GAIN WILD-TYPE 230  67    58
D34V7, multiclass
       clus
vv      19P GAIN MUTATED 19P GAIN WILD-TYPE
  N0                   2                230
  N1                   4                 67
  N2+N3                0                 58
                    vv
clus                  M0  M1 M1B  MX
  19P GAIN MUTATED     3   1   1   1
  19P GAIN WILD-TYPE 244  16   2  94
D34V8, multiclass
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  M0                 3                244
  M1                 1                 16
  M1B                1                  2
  MX                 1                 94
                    vv
clus                   I  II III  IV
  19P GAIN MUTATED     1   2   1   2
  19P GAIN WILD-TYPE 197  79  64  18
D34V9, multiclass
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  I                  1                197
  II                 2                 79
  III                1                 64
  IV                 2                 18
D34V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      0    6
  19P GAIN WILD-TYPE   20  344
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                 0                 20
  YES                6                344
D34V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  19P GAIN MUTATED                                             3
  19P GAIN WILD-TYPE                                         122
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  19P GAIN MUTATED                                        1              1
  19P GAIN WILD-TYPE                                     93             83
                    vv
clus                 LIFELONG NON-SMOKER
  19P GAIN MUTATED                     1
  19P GAIN WILD-TYPE                  53
D34V12, multiclass
                                             clus
vv                                            19P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                3
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     1
  CURRENT SMOKER                                             1
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            19P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                122
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      93
  CURRENT SMOKER                                              83
  LIFELONG NON-SMOKER                                         53
D34V13, continuous
                    vv
clus                  R0  R1  R2  RX
  19P GAIN MUTATED     4   0   0   1
  19P GAIN WILD-TYPE 214   9   4  12
D34V14, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  R0                4                214
  R1                0                  9
  R2                0                  4
  RX                1                 12

Clustering(35) Variable = 19q gain mutation analysis
D35V1, survival
                    sevent
clus2                  0   1
  19Q GAIN MUTATED    16   3
  19Q GAIN WILD-TYPE 230  82
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                19                312 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 3                 82 
$`19Q GAIN MUTATED`
TCGA-35-5375 TCGA-38-4631 TCGA-44-2662 TCGA-44-6776 TCGA-50-6594 TCGA-53-7624 
        8.68        11.64        15.78        63.72        12.16        35.11 
TCGA-55-7907 TCGA-55-8092 TCGA-55-8615 TCGA-55-8620 TCGA-69-7764 TCGA-69-7980 
        0.53         0.85         0.49         2.14        13.61        12.56 
TCGA-69-8253 TCGA-73-4675 TCGA-78-7150 TCGA-86-8585 TCGA-91-6830 TCGA-95-7043 
        3.25         1.32        21.86         1.12         0.03         0.07 
TCGA-99-8025 
       14.04 

$`19Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
        5.19        26.30         4.37        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       17.39         3.39        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        5.42         2.70        32.45        36.49        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 
       17.59        13.74         8.52         3.22        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       25.51        11.05         6.21        33.37         0.72         8.38 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        1.32         1.28         1.02         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.62         6.48         0.69         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.20         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 
        0.30         0.10         4.80         6.97         1.58         1.61 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
        0.92         0.16         5.29        68.81        47.77        19.53 
TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       39.22        17.75        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       22.68         4.24         7.56         6.05         2.30         2.93 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 
       20.28        15.35         0.46         4.01         1.25        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
       17.06       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       35.93        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 
        0.89         0.23         1.12         0.62         0.33         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8668 
        1.41         0.85         0.76         0.69         0.53         1.45 
TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 
        0.56         1.28         1.22        41.33         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 
        4.18         6.08         1.12         5.36         0.69         1.32 
TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        4.34        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 
        5.95         0.59         0.72         5.95         5.36         4.80 
TCGA-97-8179 TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
        0.49         8.22        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        3.72         9.44         9.27         7.82         6.97         2.50 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              0.03               0.03 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             63.72             223.96 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             8.680              8.465 
[1] "0.0 - 63.7 (8.7)"  "0.0 - 224.0 (8.5)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"19Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"19Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"19Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D35V2, continuous
D35V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      9   10
  19Q GAIN WILD-TYPE  194  157
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  FEMALE                9                194
  MALE                 10                157
D35V4, continuous
[1] "Remove cluster labels:" "19Q GAIN MUTATED"      
clus
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 1                 27 
        TCGA-35-4122         TCGA-35-4123         TCGA-55-7283 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7725         TCGA-55-7910 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1677         TCGA-64-1681 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-69-7974         TCGA-71-6725 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4676         TCGA-75-5122 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-7701         TCGA-86-7711 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-7713         TCGA-86-7714         TCGA-86-7954 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  19Q GAIN MUTATED                            0
  19Q GAIN WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  19Q GAIN MUTATED                                   3
  19Q GAIN WILD-TYPE                                75
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19Q GAIN MUTATED                                                   15
  19Q GAIN WILD-TYPE                                                213
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  19Q GAIN MUTATED                                            0
  19Q GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  19Q GAIN MUTATED                                               0
  19Q GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  19Q GAIN MUTATED                                0
  19Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  19Q GAIN MUTATED                                    0
  19Q GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  19Q GAIN MUTATED                              0                             0
  19Q GAIN WILD-TYPE                            2                            16
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  19Q GAIN MUTATED                                               1
  19Q GAIN WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  19Q GAIN MUTATED                                   0
  19Q GAIN WILD-TYPE                                 7
D35V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  19Q GAIN MUTATED     7   7   5   0
  19Q GAIN WILD-TYPE 106 201  25  17
D35V6, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  T1                7                106
  T2                7                201
  T3                5                 25
  T4                0                 17
                    vv
clus                  N0  N1 N2+N3
  19Q GAIN MUTATED     9   6     4
  19Q GAIN WILD-TYPE 223  65    54
D35V7, multiclass
       clus
vv      19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  N0                   9                223
  N1                   6                 65
  N2+N3                4                 54
                    vv
clus                  M0  M1 M1B  MX
  19Q GAIN MUTATED    10   1   1   7
  19Q GAIN WILD-TYPE 237  16   2  88
D35V8, multiclass
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  M0                10                237
  M1                 1                 16
  M1B                1                  2
  MX                 7                 88
                    vv
clus                   I  II III  IV
  19Q GAIN MUTATED     7   5   5   2
  19Q GAIN WILD-TYPE 191  76  60  18
D35V9, multiclass
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  I                  7                191
  II                 5                 76
  III                5                 60
  IV                 2                 18
D35V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      0   19
  19Q GAIN WILD-TYPE   20  331
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                 0                 20
  YES               19                331
D35V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  19Q GAIN MUTATED                                            12
  19Q GAIN WILD-TYPE                                         113
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  19Q GAIN MUTATED                                        4              2
  19Q GAIN WILD-TYPE                                     90             82
                    vv
clus                 LIFELONG NON-SMOKER
  19Q GAIN MUTATED                     1
  19Q GAIN WILD-TYPE                  53
D35V12, multiclass
                                             clus
vv                                            19Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               12
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             2
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            19Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                113
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      90
  CURRENT SMOKER                                              82
  LIFELONG NON-SMOKER                                         53
D35V13, continuous
                    vv
clus                  R0  R1  R2  RX
  19Q GAIN MUTATED    11   0   0   1
  19Q GAIN WILD-TYPE 207   9   4  12
D35V14, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  R0               11                207
  R1                0                  9
  R2                0                  4
  RX                1                 12

Clustering(36) Variable = 20p gain mutation analysis
D36V1, survival
                    sevent
clus2                  0   1
  20P GAIN MUTATED    36  12
  20P GAIN WILD-TYPE 210  73
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                48                283 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                12                 73 
$`20P GAIN MUTATED`
TCGA-05-4250 TCGA-05-4417 TCGA-05-4424 TCGA-05-4430 TCGA-05-4432 TCGA-05-5425 
        3.98        14.93        30.02        25.02        25.02         2.96 
TCGA-35-5375 TCGA-44-5644 TCGA-44-5645 TCGA-44-6147 TCGA-44-7660 TCGA-44-7669 
        8.68        16.37         6.84         7.76         5.33        18.87 
TCGA-44-7671 TCGA-44-8119 TCGA-50-5045 TCGA-50-5931 TCGA-50-5946 TCGA-50-6590 
       17.59         3.22        71.47         8.78        11.47        42.31 
TCGA-50-6591 TCGA-55-1592 TCGA-55-5899 TCGA-55-6543 TCGA-55-6969 TCGA-55-6970 
        3.88        23.05         2.86         0.07        40.70        15.25 
TCGA-55-7726 TCGA-55-8514 TCGA-55-8615 TCGA-55-A48Z TCGA-55-A494 TCGA-62-8399 
        1.02         6.97         0.49         0.95         0.16        68.81 
TCGA-64-1677 TCGA-67-3771 TCGA-69-7763 TCGA-69-7980 TCGA-69-8253 TCGA-71-6725 
       20.65         1.97        22.68        12.56         3.25         2.01 
TCGA-73-4662 TCGA-78-7153 TCGA-78-7155 TCGA-78-7163 TCGA-78-7220 TCGA-78-7536 
       29.95        24.99        38.50       223.96        26.53         8.02 
TCGA-86-8054 TCGA-91-6836 TCGA-91-6847 TCGA-93-8067 TCGA-97-7937 TCGA-97-8179 
        0.62         0.36        26.93         6.08         5.95         0.49 

$`20P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05         2.96         8.98        29.95 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        26.01        24.00        15.02         1.02         4.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 
        3.48         0.30         3.35         9.93         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7672 TCGA-44-8117 
        5.03         1.64        18.31        17.46        13.74         8.52 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
        9.37         4.44        12.26        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
        6.21        33.37         0.72         8.38        35.11        31.89 
TCGA-53-7813 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6642 TCGA-55-6712 
       13.74        38.73        48.62        45.17        32.61         0.79 
TCGA-55-6968 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       42.48         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.32         1.28         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.53         6.48         0.69         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 
        0.20         0.85         0.13         0.49         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8616 TCGA-55-8619 
        7.46         0.30         0.10         4.80         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A490 TCGA-55-A492 
        2.14         3.45         1.08         1.02         1.58         0.03 
TCGA-55-A493 TCGA-55-A4DG TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 
        0.92         5.29        47.77        19.53        39.22        17.75 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       56.81        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 
        5.06         6.12        13.61         4.24         7.56         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-8254 TCGA-69-8255 TCGA-73-4658 TCGA-73-4659 
        2.30         2.93         2.50         4.21        52.57        23.38 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
       20.42        17.06       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7154 TCGA-78-7156 
       20.58        35.93        21.86        39.48        19.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 
        5.88        40.11        22.29         7.04       104.15         8.48 
TCGA-78-7167 TCGA-78-7535 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       88.11        31.20        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 
       32.68        13.81         0.36         0.89         0.23         1.12 
TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        0.33         0.79         1.41         0.85         0.76         0.69 
TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 
        0.53         1.12         1.45         0.56         1.28         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6848 TCGA-91-6849 
       41.33         0.03         1.28         1.15         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        1.02         9.76         4.18         1.12         0.07         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.69         1.32         4.34        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 
       43.76         8.65         0.59         0.72         5.95         5.36 
TCGA-97-8177 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        4.80         8.22        14.04        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        5.03         3.72         9.44         9.27         7.82         6.97 
TCGA-L4-A4E6 
        2.50 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              0.07               0.03 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            223.96             163.10 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              8.73               8.45 
[1] "0.1 - 224.0 (8.7)" "0.0 - 163.1 (8.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"20P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"20P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"20P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D36V2, continuous
D36V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     27   23
  20P GAIN WILD-TYPE  176  144
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  FEMALE               27                176
  MALE                 23                144
D36V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  20P GAIN MUTATED                            2
  20P GAIN WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  20P GAIN MUTATED                                  12
  20P GAIN WILD-TYPE                                66
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20P GAIN MUTATED                                                   31
  20P GAIN WILD-TYPE                                                197
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  20P GAIN MUTATED                                            1
  20P GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  20P GAIN MUTATED                                               0
  20P GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  20P GAIN MUTATED                                0
  20P GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  20P GAIN MUTATED                                    1
  20P GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  20P GAIN MUTATED                              0                             3
  20P GAIN WILD-TYPE                            2                            13
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  20P GAIN MUTATED                                               0
  20P GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  20P GAIN MUTATED                                   0
  20P GAIN WILD-TYPE                                 7
D36V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  20P GAIN MUTATED    15  29   4   1
  20P GAIN WILD-TYPE  98 179  26  16
D36V6, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  T1               15                 98
  T2               29                179
  T3                4                 26
  T4                1                 16
                    vv
clus                  N0  N1 N2+N3
  20P GAIN MUTATED    32   8     8
  20P GAIN WILD-TYPE 200  63    50
D36V7, multiclass
       clus
vv      20P GAIN MUTATED 20P GAIN WILD-TYPE
  N0                  32                200
  N1                   8                 63
  N2+N3                8                 50
                    vv
clus                  M0  M1 M1B  MX
  20P GAIN MUTATED    31   1   0  15
  20P GAIN WILD-TYPE 216  16   3  80
D36V8, multiclass
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  M0                31                216
  M1                 1                 16
  M1B                0                  3
  MX                15                 80
                    vv
clus                   I  II III  IV
  20P GAIN MUTATED    32   6  10   1
  20P GAIN WILD-TYPE 166  75  55  19
D36V9, multiclass
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  I                 32                166
  II                 6                 75
  III               10                 55
  IV                 1                 19
D36V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED      3   47
  20P GAIN WILD-TYPE   17  303
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO                 3                 17
  YES               47                303
D36V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  20P GAIN MUTATED                                            23
  20P GAIN WILD-TYPE                                         102
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  20P GAIN MUTATED                                       12             12
  20P GAIN WILD-TYPE                                     82             72
                    vv
clus                 LIFELONG NON-SMOKER
  20P GAIN MUTATED                     1
  20P GAIN WILD-TYPE                  53
D36V12, multiclass
                                             clus
vv                                            20P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               23
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    12
  CURRENT SMOKER                                            12
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            20P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                102
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      82
  CURRENT SMOKER                                              72
  LIFELONG NON-SMOKER                                         53
D36V13, continuous
                    vv
clus                  R0  R1  R2  RX
  20P GAIN MUTATED    23   1   1   2
  20P GAIN WILD-TYPE 195   8   3  11
D36V14, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  R0               23                195
  R1                1                  8
  R2                1                  3
  RX                2                 11

Clustering(37) Variable = 20q gain mutation analysis
D37V1, survival
                    sevent
clus2                  0   1
  20Q GAIN MUTATED    45  17
  20Q GAIN WILD-TYPE 201  68
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                62                269 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                17                 68 
$`20Q GAIN MUTATED`
TCGA-05-4250 TCGA-05-4397 TCGA-05-4420 TCGA-05-4424 TCGA-05-4430 TCGA-05-4432 
        3.98        24.03        29.95        30.02        25.02        25.02 
TCGA-05-5423 TCGA-05-5425 TCGA-35-5375 TCGA-38-4629 TCGA-44-5645 TCGA-44-6147 
        4.96         2.96         8.68        28.37         6.84         7.76 
TCGA-44-7660 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-8117 TCGA-44-8119 
        5.33        18.87        17.46        17.59         8.52         3.22 
TCGA-49-4487 TCGA-49-4512 TCGA-50-5931 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       28.11        29.75         8.78        11.47        42.31         3.88 
TCGA-55-1592 TCGA-55-1594 TCGA-55-6543 TCGA-55-6969 TCGA-55-6970 TCGA-55-7726 
       23.05        38.73         0.07        40.70        15.25         1.02 
TCGA-55-7910 TCGA-55-8514 TCGA-55-8615 TCGA-55-8620 TCGA-55-A48Z TCGA-62-8399 
        6.48         6.97         0.49         2.14         0.95        68.81 
TCGA-64-1677 TCGA-64-1681 TCGA-64-5774 TCGA-67-3771 TCGA-69-7979 TCGA-69-7980 
       20.65        44.38        83.84         1.97         2.93        12.56 
TCGA-69-8253 TCGA-69-8255 TCGA-71-6725 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
        3.25         4.21         2.01        24.99        19.50        38.50 
TCGA-78-7163 TCGA-78-7220 TCGA-78-7536 TCGA-86-8054 TCGA-86-8279 TCGA-91-6836 
      223.96        26.53         8.02         0.62         0.69         0.36 
TCGA-91-6847 TCGA-91-7771 TCGA-93-8067 TCGA-95-7567 TCGA-95-7947 TCGA-97-7937 
       26.93         1.02         6.08         5.36         1.32         5.95 
TCGA-97-8179 TCGA-L4-A4E5 
        0.49         6.97 

$`20Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 
       38.07        19.92        14.01        37.02         9.96        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4426 
        8.02        20.05         2.96        14.93         8.98        26.01 
TCGA-05-4427 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5429 TCGA-05-5715 
       26.01        24.00        15.02         1.02         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       49.02        35.28        11.64        44.61         5.19        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        4.37        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 
        6.44         6.21         4.60         3.48        16.37         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 
       32.45        36.49        16.41         9.80         5.03         1.64 
TCGA-44-7667 TCGA-44-7672 TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       18.31        13.74        76.21        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 
       46.72        14.07        32.84         8.81        29.46        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6592 TCGA-50-6593 
       15.12         9.37         4.44        12.26        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       12.16         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 
       31.89        13.74        48.62        45.17         2.86        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
        0.79        42.48         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        3.12         1.32         1.28         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.62         0.53         0.69         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 
        0.20         0.85         0.13         0.49         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8616 TCGA-55-8619 
        7.46         0.30         0.10         4.80         1.58         1.61 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        3.45         1.08         1.02         1.58         0.03         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 
        0.16         5.29        47.77        19.53        39.22        17.75 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 
       56.81        39.09        55.40        37.02         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         0.99         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
       22.68        13.61         4.24         7.56         6.05         2.30 
TCGA-69-8254 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.50        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
        0.46         1.32         4.01         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
      163.10        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       21.86        39.48        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7537 
        7.04       104.15         8.48        88.11        31.20        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 
        0.89         0.23         1.12         0.33         0.79         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 
        0.85         0.76         0.53         1.12         1.45         0.56 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 
        4.18         0.92         9.76         4.18         1.12         0.07 
TCGA-95-7944 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        0.69         4.34        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 
        8.65         0.59         0.72         5.95         5.36         4.80 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
        8.22        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 
        3.72         9.44         9.27         7.82         2.50 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              0.07               0.03 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            223.96             163.10 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              8.27               8.48 
[1] "0.1 - 224.0 (8.3)" "0.0 - 163.1 (8.5)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-L4-A4E6 
"20Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-L4-A4E6 
"20Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-L4-A4E6 
"20Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     31   34
  20Q GAIN WILD-TYPE  172  133
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  FEMALE               31                172
  MALE                 34                133
D37V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  20Q GAIN MUTATED                            3
  20Q GAIN WILD-TYPE                          8
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  20Q GAIN MUTATED                                  15
  20Q GAIN WILD-TYPE                                63
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20Q GAIN MUTATED                                                   41
  20Q GAIN WILD-TYPE                                                187
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  20Q GAIN MUTATED                                            1
  20Q GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  20Q GAIN MUTATED                                               0
  20Q GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  20Q GAIN MUTATED                                0
  20Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  20Q GAIN MUTATED                                    1
  20Q GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  20Q GAIN MUTATED                              0                             3
  20Q GAIN WILD-TYPE                            2                            13
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  20Q GAIN MUTATED                                               1
  20Q GAIN WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  20Q GAIN MUTATED                                   0
  20Q GAIN WILD-TYPE                                 7
D37V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  20Q GAIN MUTATED    19  37   7   1
  20Q GAIN WILD-TYPE  94 171  23  16
D37V6, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  T1               19                 94
  T2               37                171
  T3                7                 23
  T4                1                 16
                    vv
clus                  N0  N1 N2+N3
  20Q GAIN MUTATED    39  12    12
  20Q GAIN WILD-TYPE 193  59    46
D37V7, multiclass
       clus
vv      20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  N0                  39                193
  N1                  12                 59
  N2+N3               12                 46
                    vv
clus                  M0  M1 M1B  MX
  20Q GAIN MUTATED    44   1   1  17
  20Q GAIN WILD-TYPE 203  16   2  78
D37V8, multiclass
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  M0                44                203
  M1                 1                 16
  M1B                1                  2
  MX                17                 78
                    vv
clus                   I  II III  IV
  20Q GAIN MUTATED    35  13  14   2
  20Q GAIN WILD-TYPE 163  68  51  18
D37V9, multiclass
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  I                 35                163
  II                13                 68
  III               14                 51
  IV                 2                 18
D37V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED      1   64
  20Q GAIN WILD-TYPE   19  286
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO                 1                 19
  YES               64                286
D37V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  20Q GAIN MUTATED                                            31
  20Q GAIN WILD-TYPE                                          94
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  20Q GAIN MUTATED                                       13             17
  20Q GAIN WILD-TYPE                                     81             67
                    vv
clus                 LIFELONG NON-SMOKER
  20Q GAIN MUTATED                     3
  20Q GAIN WILD-TYPE                  51
D37V12, multiclass
                                             clus
vv                                            20Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               31
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    13
  CURRENT SMOKER                                            17
  LIFELONG NON-SMOKER                                        3
                                             clus
vv                                            20Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 94
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      81
  CURRENT SMOKER                                              67
  LIFELONG NON-SMOKER                                         51
D37V13, continuous
                    vv
clus                  R0  R1  R2  RX
  20Q GAIN MUTATED    34   1   1   2
  20Q GAIN WILD-TYPE 184   8   3  11
D37V14, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  R0               34                184
  R1                1                  8
  R2                1                  3
  RX                2                 11

Clustering(38) Variable = 21q gain mutation analysis
D38V1, survival
                    sevent
clus2                  0   1
  21Q GAIN MUTATED    16  11
  21Q GAIN WILD-TYPE 230  74
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                27                304 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                11                 74 
$`21Q GAIN MUTATED`
TCGA-05-5423 TCGA-38-4628 TCGA-38-6178 TCGA-44-6147 TCGA-49-4488 TCGA-49-4501 
        4.96        49.02         5.19         7.76        28.57        46.72 
TCGA-49-4512 TCGA-50-5941 TCGA-50-6594 TCGA-50-6597 TCGA-50-6673 TCGA-55-7914 
       29.75         9.37        12.16        33.37         0.72         0.10 
TCGA-55-A48Z TCGA-62-8399 TCGA-64-1678 TCGA-64-1680 TCGA-67-3771 TCGA-71-6725 
        0.95        68.81        39.09        37.02         1.97         2.01 
TCGA-73-4677 TCGA-73-7499 TCGA-78-7147 TCGA-78-7155 TCGA-78-7163 TCGA-78-7535 
        1.25        17.06        19.27        38.50       223.96        31.20 
TCGA-78-7542 TCGA-86-8279 TCGA-97-8179 
       10.55         0.69         0.49 

$`21Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       85.32        37.71        28.37        35.28        11.64        44.61 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 
        6.84         0.30         3.35         9.93         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 
       17.59        13.74         8.52         3.22        76.21        28.11 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        14.07        32.84         8.81        29.46 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       21.47         8.45        15.12         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-7109 
       42.31         3.88        25.51        11.05         6.21         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       35.11        31.89        13.74        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        3.12         1.32         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-8087 
        1.78         0.62         0.53         6.48         0.69         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 
        3.02         0.20         0.85         0.13         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 
        1.41         7.46         0.30         0.10         4.80         6.97 
TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        0.49         1.58         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        1.02         1.58         0.03         0.92         0.16         5.29 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
       47.77        19.53        39.22        17.75        56.81        20.65 
TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       55.40        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         0.99         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.89         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       13.61         4.24         7.56         6.05         2.30         2.93 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-73-4658 TCGA-73-4659 
       12.56         3.25         2.50         4.21        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-7498 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 
       20.42       163.10        27.16         5.65        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 
       21.86        39.48        24.99        19.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 
       40.11        22.29         7.04       104.15         8.48        88.11 
TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 
       26.53         8.02        53.33        10.75        28.96        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 
       13.81         0.36         0.89         0.23         1.12         0.62 
TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 
        0.33         0.79         1.41         0.85         0.76         0.53 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        1.12         1.45         0.56         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        0.03         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        0.92         1.02         9.76         4.18         6.08         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 
        0.07         5.36         0.69         1.32         4.34        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 TCGA-99-8025 
        0.72         5.95         5.36         4.80         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        9.27         7.82         6.97         2.50 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              0.10               0.03 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            223.96             163.10 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
             12.16               8.35 
[1] "0.1 - 224.0 (12.2)" "0.0 - 163.1 (8.4)" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"21Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"21Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"21Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED     20   11
  21Q GAIN WILD-TYPE  183  156
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  FEMALE               20                183
  MALE                 11                156
D38V4, continuous
[1] "Remove cluster labels:" "21Q GAIN MUTATED"      
clus
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 2                 26 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7910         TCGA-64-1677         TCGA-64-1681 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-64-5778         TCGA-69-7974         TCGA-73-4659 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-83-5908 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-7701         TCGA-86-7711         TCGA-86-7713 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-7714         TCGA-86-7954         TCGA-91-6849 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-93-7348         TCGA-99-7458 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  21Q GAIN MUTATED                            1
  21Q GAIN WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  21Q GAIN MUTATED                                   5
  21Q GAIN WILD-TYPE                                73
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  21Q GAIN MUTATED                                                   22
  21Q GAIN WILD-TYPE                                                206
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  21Q GAIN MUTATED                                            0
  21Q GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  21Q GAIN MUTATED                                               0
  21Q GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  21Q GAIN MUTATED                                0
  21Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  21Q GAIN MUTATED                                    1
  21Q GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  21Q GAIN MUTATED                              0                             2
  21Q GAIN WILD-TYPE                            2                            14
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  21Q GAIN MUTATED                                               0
  21Q GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  21Q GAIN MUTATED                                   0
  21Q GAIN WILD-TYPE                                 7
D38V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  21Q GAIN MUTATED     9  21   1   0
  21Q GAIN WILD-TYPE 104 187  29  17
D38V6, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  T1                9                104
  T2               21                187
  T3                1                 29
  T4                0                 17
                    vv
clus                  N0  N1 N2+N3
  21Q GAIN MUTATED    15   7     8
  21Q GAIN WILD-TYPE 217  64    50
D38V7, multiclass
       clus
vv      21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  N0                  15                217
  N1                   7                 64
  N2+N3                8                 50
                    vv
clus                  M0  M1 M1B  MX
  21Q GAIN MUTATED    24   1   0   5
  21Q GAIN WILD-TYPE 223  16   3  90
D38V8, multiclass
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  M0                24                223
  M1                 1                 16
  M1B                0                  3
  MX                 5                 90
                    vv
clus                   I  II III  IV
  21Q GAIN MUTATED    15   8   7   1
  21Q GAIN WILD-TYPE 183  73  58  19
D38V9, multiclass
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  I                 15                183
  II                 8                 73
  III                7                 58
  IV                 1                 19
D38V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      1   30
  21Q GAIN WILD-TYPE   19  320
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                 1                 19
  YES               30                320
D38V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  21Q GAIN MUTATED                                             6
  21Q GAIN WILD-TYPE                                         119
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  21Q GAIN MUTATED                                        8              7
  21Q GAIN WILD-TYPE                                     86             77
                    vv
clus                 LIFELONG NON-SMOKER
  21Q GAIN MUTATED                    10
  21Q GAIN WILD-TYPE                  44
D38V12, multiclass
                                             clus
vv                                            21Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                6
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     8
  CURRENT SMOKER                                             7
  LIFELONG NON-SMOKER                                       10
                                             clus
vv                                            21Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                119
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      86
  CURRENT SMOKER                                              77
  LIFELONG NON-SMOKER                                         44
D38V13, continuous
                    vv
clus                  R0  R1  R2  RX
  21Q GAIN MUTATED    22   1   0   1
  21Q GAIN WILD-TYPE 196   8   4  12
D38V14, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  R0               22                196
  R1                1                  8
  R2                0                  4
  RX                1                 12

Clustering(39) Variable = 22q gain mutation analysis
D39V1, survival
                    sevent
clus2                  0   1
  22Q GAIN MUTATED     8   4
  22Q GAIN WILD-TYPE 238  81
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                12                319 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 4                 81 
$`22Q GAIN MUTATED`
TCGA-05-4420 TCGA-38-4625 TCGA-44-7670 TCGA-49-4490 TCGA-50-5931 TCGA-55-1592 
       29.95        47.61        17.46        12.66         8.78        23.05 
TCGA-55-7726 TCGA-55-7907 TCGA-55-8514 TCGA-73-4675 TCGA-78-7150 TCGA-J2-A4AE 
        1.02         0.53         6.97         1.32        21.86         9.27 

$`22Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        2.04         0.46         7.36         5.95         8.68        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
        5.19        26.30         4.37        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 
       18.87        17.59        13.74         8.52         3.22        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.11        28.57        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       35.11        31.89        13.74        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.32         1.28         1.02         0.79         1.78         0.62 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        6.48         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.85         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
        0.30         0.10         4.80         0.49         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 
        2.14         3.45         1.08         1.02         0.95         1.58 
TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O 
        0.03         0.92         0.16         5.29        68.81        47.77 
TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
       19.53        39.22        17.75        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       55.40        37.02        44.38        83.84         0.10        30.44 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       16.67        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        2.04         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 
        6.12        22.68        13.61         4.24         7.56         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        2.30         2.93        12.56         3.25         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        0.46         4.01         1.25        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 
       27.16         5.65        19.27        20.58        35.93        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       26.53        31.20         8.02        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        32.68        13.81         0.36         0.89         0.23 
TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
        1.12         0.62         0.33         0.79         1.41         0.85 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 
        0.76         0.69         0.53         1.12         1.45         0.56 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 
        4.18         6.08         1.12         0.07         5.36         0.69 
TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        1.32         4.34        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 
        8.65         5.95         0.59         0.72         5.95         5.36 
TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        4.80         0.49         8.22        14.04        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AG TCGA-L4-A4E5 
        5.56         5.03         3.72         9.44         7.82         6.97 
TCGA-L4-A4E6 
        2.50 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              0.53               0.03 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             47.61             223.96 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
            10.965              8.380 
[1] "0.5 - 47.6 (11.0)" "0.0 - 224.0 (8.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"22Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"22Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-L4-A4E6 
"22Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      9    6
  22Q GAIN WILD-TYPE  194  161
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  FEMALE                9                194
  MALE                  6                161
D39V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  22Q GAIN MUTATED                            0
  22Q GAIN WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  22Q GAIN MUTATED                                   1
  22Q GAIN WILD-TYPE                                77
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  22Q GAIN MUTATED                                                   13
  22Q GAIN WILD-TYPE                                                215
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  22Q GAIN MUTATED                                            0
  22Q GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  22Q GAIN MUTATED                                               0
  22Q GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  22Q GAIN MUTATED                                0
  22Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  22Q GAIN MUTATED                                    1
  22Q GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  22Q GAIN MUTATED                              0                             0
  22Q GAIN WILD-TYPE                            2                            16
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  22Q GAIN MUTATED                                               0
  22Q GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  22Q GAIN MUTATED                                   0
  22Q GAIN WILD-TYPE                                 7
D39V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  22Q GAIN MUTATED     3  10   2   0
  22Q GAIN WILD-TYPE 110 198  28  17
D39V6, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  T1                3                110
  T2               10                198
  T3                2                 28
  T4                0                 17
                    vv
clus                  N0  N1 N2+N3
  22Q GAIN MUTATED     7   6     2
  22Q GAIN WILD-TYPE 225  65    56
D39V7, multiclass
       clus
vv      22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  N0                   7                225
  N1                   6                 65
  N2+N3                2                 56
                    vv
clus                  M0  M1 M1B  MX
  22Q GAIN MUTATED    11   0   0   4
  22Q GAIN WILD-TYPE 236  17   3  91
D39V8, multiclass
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  M0                11                236
  M1                 0                 17
  M1B                0                  3
  MX                 4                 91
                    vv
clus                   I  II III  IV
  22Q GAIN MUTATED     7   5   3   0
  22Q GAIN WILD-TYPE 191  76  62  20
D39V9, multiclass
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  I                  7                191
  II                 5                 76
  III                3                 62
  IV                 0                 20
D39V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      1   14
  22Q GAIN WILD-TYPE   19  336
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                 1                 19
  YES               14                336
D39V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  22Q GAIN MUTATED                                             4
  22Q GAIN WILD-TYPE                                         121
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  22Q GAIN MUTATED                                        3              3
  22Q GAIN WILD-TYPE                                     91             81
                    vv
clus                 LIFELONG NON-SMOKER
  22Q GAIN MUTATED                     4
  22Q GAIN WILD-TYPE                  50
D39V12, multiclass
                                             clus
vv                                            22Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                4
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     3
  CURRENT SMOKER                                             3
  LIFELONG NON-SMOKER                                        4
                                             clus
vv                                            22Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                121
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      91
  CURRENT SMOKER                                              81
  LIFELONG NON-SMOKER                                         50
D39V13, continuous
                    vv
clus                  R0  R1  R2  RX
  22Q GAIN MUTATED    11   0   0   1
  22Q GAIN WILD-TYPE 207   9   4  12
D39V14, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  R0               11                207
  R1                0                  9
  R2                0                  4
  RX                1                 12

Clustering(40) Variable = Xq gain mutation analysis
D40V1, survival
                   sevent
clus2                 0   1
  XQ GAIN MUTATED    13   2
  XQ GAIN WILD-TYPE 233  83
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               15               316 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                2                83 
$`XQ GAIN MUTATED`
TCGA-05-4426 TCGA-44-2659 TCGA-50-5933 TCGA-55-6543 TCGA-55-7726 TCGA-55-7907 
       26.01        17.39        77.88         0.07         1.02         0.53 
TCGA-55-8094 TCGA-64-1676 TCGA-69-7980 TCGA-78-7154 TCGA-78-7539 TCGA-86-8055 
        0.13        56.81        12.56        19.50        10.75         0.33 
TCGA-95-7043 TCGA-95-7567 TCGA-97-8179 
        0.07         5.36         0.49 

$`XQ GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       13.15         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        17.46        17.59        13.74         8.52         3.22 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
        0.72         8.38        35.11        31.89        13.74        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62        45.17         2.86        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 
        1.78         0.62         6.48         0.69         0.10         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 
        3.02         0.20         0.85         0.49         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 
        7.46         0.30         0.10         4.80         6.97         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        0.95         1.58         0.03         0.92         0.16         5.29 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1677 
       68.81        47.77        19.53        39.22        17.75        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
        5.06         6.12        22.68        13.61         4.24         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        6.05         2.30         2.93         3.25         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
        0.46         1.32         4.01         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
      163.10        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       21.86        39.48        24.99        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 
       88.11        26.53        31.20         8.02        53.33        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        32.68        13.81         0.36         0.89         0.23 
TCGA-86-7953 TCGA-86-8054 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        1.12         0.62         0.79         1.41         0.85         0.76 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 
        0.69         0.53         1.12         1.45         0.56         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 
        6.08         1.12         0.69         1.32         4.34        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 TCGA-99-8025 
        0.72         5.95         5.36         4.80         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        9.27         7.82         6.97         2.50 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             0.07              0.03 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            77.88            223.96 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             5.36              8.50 
[1] "0.1 - 77.9 (5.4)"  "0.0 - 224.0 (8.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      7   10
  XQ GAIN WILD-TYPE  196  157
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  FEMALE               7               196
  MALE                10               157
D40V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  XQ GAIN MUTATED                            1
  XQ GAIN WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  XQ GAIN MUTATED                                   4
  XQ GAIN WILD-TYPE                                74
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  XQ GAIN MUTATED                                                   11
  XQ GAIN WILD-TYPE                                                217
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  XQ GAIN MUTATED                                            1
  XQ GAIN WILD-TYPE                                          3
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  XQ GAIN MUTATED                                               0
  XQ GAIN WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  XQ GAIN MUTATED                                0
  XQ GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  XQ GAIN MUTATED                                    0
  XQ GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  XQ GAIN MUTATED                              0                             0
  XQ GAIN WILD-TYPE                            2                            16
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  XQ GAIN MUTATED                                               0
  XQ GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  XQ GAIN MUTATED                                   0
  XQ GAIN WILD-TYPE                                 7
D40V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  XQ GAIN MUTATED     7   8   1   1
  XQ GAIN WILD-TYPE 106 200  29  16
D40V6, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  T1               7               106
  T2               8               200
  T3               1                29
  T4               1                16
                   vv
clus                 N0  N1 N2+N3
  XQ GAIN MUTATED    10   4     3
  XQ GAIN WILD-TYPE 222  67    55
D40V7, multiclass
       clus
vv      XQ GAIN MUTATED XQ GAIN WILD-TYPE
  N0                 10               222
  N1                  4                67
  N2+N3               3                55
                   vv
clus                 M0  M1 M1B  MX
  XQ GAIN MUTATED    11   1   1   3
  XQ GAIN WILD-TYPE 236  16   2  92
D40V8, multiclass
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  M0               11               236
  M1                1                16
  M1B               1                 2
  MX                3                92
                   vv
clus                  I  II III  IV
  XQ GAIN MUTATED     8   3   3   2
  XQ GAIN WILD-TYPE 190  78  62  18
D40V9, multiclass
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  I                 8               190
  II                3                78
  III               3                62
  IV                2                18
D40V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      1   16
  XQ GAIN WILD-TYPE   19  334
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  NO                1                19
  YES              16               334
D40V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  XQ GAIN MUTATED                                             7
  XQ GAIN WILD-TYPE                                         118
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  XQ GAIN MUTATED                                        7              2
  XQ GAIN WILD-TYPE                                     87             82
                   vv
clus                LIFELONG NON-SMOKER
  XQ GAIN MUTATED                     0
  XQ GAIN WILD-TYPE                  54
D40V12, multiclass
                                             clus
vv                                            XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7               118
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    7                87
  CURRENT SMOKER                                            2                82
  LIFELONG NON-SMOKER                                       0                54
D40V13, continuous
                   vv
clus                 R0  R1  R2  RX
  XQ GAIN MUTATED    10   0   0   1
  XQ GAIN WILD-TYPE 208   9   4  12
D40V14, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  R0              10               208
  R1               0                 9
  R2               0                 4
  RX               1                12

Clustering(41) Variable = 1p loss mutation analysis
D41V1, survival
                   sevent
clus2                 0   1
  1P LOSS MUTATED    15   7
  1P LOSS WILD-TYPE 231  78
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               22               309 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                7                78 
$`1P LOSS MUTATED`
TCGA-05-4250 TCGA-44-5643 TCGA-44-6144 TCGA-44-7660 TCGA-50-5051 TCGA-50-5935 
        3.98         3.48         0.30         5.33        14.96        21.47 
TCGA-50-5936 TCGA-50-6594 TCGA-50-7109 TCGA-55-6972 TCGA-55-A492 TCGA-64-5774 
        8.45        12.16         8.38        48.49         0.03        83.84 
TCGA-69-7973 TCGA-73-4677 TCGA-78-7146 TCGA-78-7149 TCGA-78-7153 TCGA-86-8054 
        7.56         1.25         5.65        35.93        24.99         0.62 
TCGA-86-8278 TCGA-95-7043 TCGA-95-7567 TCGA-97-8174 
        0.76         0.07         5.36         5.36 

$`1P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       16.37         6.84         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        9.80         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 
       17.59        13.74         8.52         3.22        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46        29.75        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       35.87        77.88        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       11.47        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
       33.37         0.72        35.11        31.89        13.74        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 
        0.79        42.48        40.70        15.25         0.92         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.13         3.12         1.32         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 
        0.10         0.69         3.02         0.20         0.85         0.13 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A493 
        3.45         1.08         1.02         0.95         1.58         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 
        0.16         5.29        68.81        47.77        19.53        39.22 
TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
       17.75        56.81        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       44.38         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 
        4.24         6.05         2.30         2.93        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-7498 
       20.28        15.35         0.46         1.32         4.01        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 
       17.06       163.10        27.16        19.27        20.58        21.86 
TCGA-78-7152 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       39.48        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       26.53        31.20         8.02        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        32.68        13.81         0.36         0.89         0.23 
TCGA-86-7953 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8279 
        1.12         0.33         0.79         1.41         0.85         0.69 
TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 
        0.53         1.12         1.45         0.56         1.28         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         0.03         1.28         1.15         0.36        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        4.18         0.92         1.02         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 
        1.12         0.69         1.32         4.34        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8172 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        5.95         4.80         0.49         8.22        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        1.45         5.56         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        7.82         6.97         2.50 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             0.03              0.03 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            83.84            223.96 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            5.505             8.780 
[1] "0.0 - 83.8 (5.5)"  "0.0 - 224.0 (8.8)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED     11   15
  1P LOSS WILD-TYPE  192  152
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  FEMALE              11               192
  MALE                15               152
D41V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  1P LOSS MUTATED                            1
  1P LOSS WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  1P LOSS MUTATED                                   7
  1P LOSS WILD-TYPE                                71
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1P LOSS MUTATED                                                   14
  1P LOSS WILD-TYPE                                                214
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  1P LOSS MUTATED                                            0
  1P LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  1P LOSS MUTATED                                               0
  1P LOSS WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  1P LOSS MUTATED                                0
  1P LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  1P LOSS MUTATED                                    0
  1P LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  1P LOSS MUTATED                              0                             2
  1P LOSS WILD-TYPE                            2                            14
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  1P LOSS MUTATED                                               0
  1P LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  1P LOSS MUTATED                                   2
  1P LOSS WILD-TYPE                                 5
D41V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  1P LOSS MUTATED     6  16   2   2
  1P LOSS WILD-TYPE 107 192  28  15
D41V6, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  T1               6               107
  T2              16               192
  T3               2                28
  T4               2                15
                   vv
clus                 N0  N1 N2+N3
  1P LOSS MUTATED    16   5     5
  1P LOSS WILD-TYPE 216  66    53
D41V7, multiclass
       clus
vv      1P LOSS MUTATED 1P LOSS WILD-TYPE
  N0                 16               216
  N1                  5                66
  N2+N3               5                53
                   vv
clus                 M0  M1 M1B  MX
  1P LOSS MUTATED    22   0   0   4
  1P LOSS WILD-TYPE 225  17   3  91
D41V8, multiclass
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  M0               22               225
  M1                0                17
  M1B               0                 3
  MX                4                91
                   vv
clus                  I  II III  IV
  1P LOSS MUTATED    15   3   8   0
  1P LOSS WILD-TYPE 183  78  57  20
D41V9, multiclass
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  I                15               183
  II                3                78
  III               8                57
  IV                0                20
D41V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      3   23
  1P LOSS WILD-TYPE   17  327
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO                3                17
  YES              23               327
D41V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  1P LOSS MUTATED                                             9
  1P LOSS WILD-TYPE                                         116
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  1P LOSS MUTATED                                        4              9
  1P LOSS WILD-TYPE                                     90             75
                   vv
clus                LIFELONG NON-SMOKER
  1P LOSS MUTATED                     2
  1P LOSS WILD-TYPE                  52
D41V12, multiclass
                                             clus
vv                                            1P LOSS MUTATED 1P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               9               116
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    4                90
  CURRENT SMOKER                                            9                75
  LIFELONG NON-SMOKER                                       2                52
D41V13, continuous
                   vv
clus                 R0  R1  R2  RX
  1P LOSS MUTATED    12   0   1   1
  1P LOSS WILD-TYPE 206   9   3  12
D41V14, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  R0              12               206
  R1               0                 9
  R2               1                 3
  RX               1                12

Clustering(42) Variable = 1q loss mutation analysis
D42V1, survival
                   sevent
clus2                 0   1
  1Q LOSS MUTATED     4   4
  1Q LOSS WILD-TYPE 242  81
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                8               323 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                4                81 
$`1Q LOSS MUTATED`
TCGA-44-5643 TCGA-50-5935 TCGA-50-5936 TCGA-50-6594 TCGA-50-7109 TCGA-78-7146 
        3.48        21.47         8.45        12.16         8.38         5.65 
TCGA-86-8278 TCGA-95-7043 
        0.76         0.07 

$`1Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61         5.19        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
       18.31        18.87        17.46        17.59        13.74         8.52 
TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        3.22        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
        3.88        25.51        11.05         6.21        33.37         0.72 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       35.11        31.89        13.74        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        3.12         1.32         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 
        0.69         3.02         0.20         0.85         0.13         0.49 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        7.07         1.41         7.46         0.30         0.10         4.80 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        6.97         0.49         1.58         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        1.08         1.02         0.95         1.58         0.03         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 
        0.16         5.29        68.81        47.77        19.53        39.22 
TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
       17.75        56.81        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.89         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       13.61         4.24         7.56         6.05         2.30         2.93 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
       12.56         3.25         2.50         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
        4.01         1.25        20.42        17.06       163.10        27.16 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
        7.04       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       31.20         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 
       32.68        13.81         0.36         0.89         0.23         1.12 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8279 
        0.62         0.33         0.79         1.41         0.85         0.69 
TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 
        0.53         1.12         1.45         0.56         1.28         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         0.03         1.28         1.15         0.36        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        4.18         0.92         1.02         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 
        1.12         5.36         0.69         1.32         4.34        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 
        0.72         5.95         5.36         4.80         0.49         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        9.44         9.27         7.82         6.97         2.50 

  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             0.07              0.03 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            21.47            223.96 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            7.015             8.650 
[1] "0.1 - 21.5 (7.0)"  "0.0 - 224.0 (8.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
[1] "hr=" "6.6"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      5    5
  1Q LOSS WILD-TYPE  198  162
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  FEMALE               5               198
  MALE                 5               162
D42V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  1Q LOSS MUTATED                            0
  1Q LOSS WILD-TYPE                         11
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  1Q LOSS MUTATED                                   3
  1Q LOSS WILD-TYPE                                75
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1Q LOSS MUTATED                                                    5
  1Q LOSS WILD-TYPE                                                223
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  1Q LOSS MUTATED                                            0
  1Q LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  1Q LOSS MUTATED                                               0
  1Q LOSS WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  1Q LOSS MUTATED                                0
  1Q LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  1Q LOSS MUTATED                                    0
  1Q LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  1Q LOSS MUTATED                              0                             0
  1Q LOSS WILD-TYPE                            2                            16
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  1Q LOSS MUTATED                                               0
  1Q LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  1Q LOSS MUTATED                                   2
  1Q LOSS WILD-TYPE                                 5
D42V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  1Q LOSS MUTATED     3   6   1   0
  1Q LOSS WILD-TYPE 110 202  29  17
D42V6, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  T1               3               110
  T2               6               202
  T3               1                29
  T4               0                17
                   vv
clus                 N0  N1 N2+N3
  1Q LOSS MUTATED     5   1     4
  1Q LOSS WILD-TYPE 227  70    54
D42V7, multiclass
       clus
vv      1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  N0                  5               227
  N1                  1                70
  N2+N3               4                54
                   vv
clus                 M0  M1 M1B  MX
  1Q LOSS MUTATED     8   0   0   2
  1Q LOSS WILD-TYPE 239  17   3  93
D42V8, multiclass
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  M0                8               239
  M1                0                17
  M1B               0                 3
  MX                2                93
                   vv
clus                  I  II III  IV
  1Q LOSS MUTATED     5   1   4   0
  1Q LOSS WILD-TYPE 193  80  61  20
D42V9, multiclass
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  I                 5               193
  II                1                80
  III               4                61
  IV                0                20
D42V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      2    8
  1Q LOSS WILD-TYPE   18  342
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  NO                2                18
  YES               8               342
D42V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  1Q LOSS MUTATED                                             3
  1Q LOSS WILD-TYPE                                         122
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  1Q LOSS MUTATED                                        1              3
  1Q LOSS WILD-TYPE                                     93             81
                   vv
clus                LIFELONG NON-SMOKER
  1Q LOSS MUTATED                     1
  1Q LOSS WILD-TYPE                  53
D42V12, multiclass
                                             clus
vv                                            1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3               122
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                93
  CURRENT SMOKER                                            3                81
  LIFELONG NON-SMOKER                                       1                53
D42V13, continuous
[1] "Remove cluster labels:" "1Q LOSS MUTATED"       
clus
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                2               187 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4433        TCGA-05-5420        TCGA-05-5423 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-35-4122        TCGA-35-4123 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4625        TCGA-38-4626        TCGA-38-7271 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2662        TCGA-44-2666        TCGA-44-2668 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-4112 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7672 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-8117        TCGA-44-8119        TCGA-49-4486        TCGA-49-4494 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6642        TCGA-55-6712        TCGA-55-6971 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7283        TCGA-55-7570        TCGA-55-7574        TCGA-55-7576 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7726        TCGA-55-7728        TCGA-55-7907 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8089 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8511        TCGA-55-8512        TCGA-55-8514 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A491 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-A492        TCGA-55-A493        TCGA-55-A494        TCGA-64-1677 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7979        TCGA-69-8253        TCGA-69-8255 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-7498 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-75-6214        TCGA-75-7025        TCGA-75-7031        TCGA-78-7145 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7542        TCGA-78-7633 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-80-5607        TCGA-80-5608        TCGA-83-5908        TCGA-86-6851 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7714        TCGA-86-7954        TCGA-86-8054 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8074        TCGA-86-8281        TCGA-86-8673 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-91-6829        TCGA-91-6830        TCGA-91-6836 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7567 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-8172 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-J2-8194        TCGA-J2-A4AD 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
                   vv
clus                 R0  R1  R2  RX
  1Q LOSS MUTATED     4   0   0   0
  1Q LOSS WILD-TYPE 214   9   4  13
D42V14, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  R0               4               214
  R1               0                 9
  R2               0                 4
  RX               0                13

Clustering(43) Variable = 2p loss mutation analysis
D43V1, survival
                   sevent
clus2                 0   1
  2P LOSS MUTATED     3   1
  2P LOSS WILD-TYPE 243  84
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                4               327 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                1                84 
$`2P LOSS MUTATED`
TCGA-44-2665 TCGA-50-7109 TCGA-97-8174 TCGA-L4-A4E5 
       13.15         8.38         5.36         6.97 

$`2P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61         5.19        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 
       19.10        13.15        17.39         3.39        15.78         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        3.48        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
       18.31        18.87        17.46        17.59        13.74         8.52 
TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        3.22        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
        6.21        33.37         0.72        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.02         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        6.48         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.85         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 
        0.30         0.10         4.80         6.97         0.49         1.58 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.61         2.14         3.45         1.08         1.02         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 
        1.58         0.03         0.92         0.16         5.29        68.81 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
       47.77        19.53        39.22        17.75        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
        5.06         6.12        22.68        13.61         4.24         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        6.05         2.30         2.93        12.56         3.25         2.50 
TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.21         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 
       15.35         0.46         1.32         4.01         1.25        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
       17.06       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      223.96         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 
        0.36         0.89         0.23         1.12         0.62         0.33 
TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 
        0.79         1.41         0.85         0.76         0.69         0.53 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        1.12         1.45         0.56         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        0.03         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        0.92         1.02         9.76         4.18         6.08         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 
        0.07         5.36         0.69         1.32         4.34        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8172 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 
        0.72         5.95         4.80         0.49         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 
        9.27         7.82         2.50 

  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             5.36              0.03 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            13.15            223.96 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            7.675             8.520 
[1] "5.4 - 13.2 (7.7)"  "0.0 - 224.0 (8.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
[1] "hr=" "3.1"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      3    2
  2P LOSS WILD-TYPE  200  165
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  FEMALE               3               200
  MALE                 2               165
D43V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  2P LOSS MUTATED                            0
  2P LOSS WILD-TYPE                         11
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  2P LOSS MUTATED                                   0
  2P LOSS WILD-TYPE                                78
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2P LOSS MUTATED                                                    4
  2P LOSS WILD-TYPE                                                224
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  2P LOSS MUTATED                                            0
  2P LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  2P LOSS MUTATED                                               0
  2P LOSS WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  2P LOSS MUTATED                                0
  2P LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  2P LOSS MUTATED                                    0
  2P LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  2P LOSS MUTATED                              0                             1
  2P LOSS WILD-TYPE                            2                            15
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  2P LOSS MUTATED                                               0
  2P LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  2P LOSS MUTATED                                   0
  2P LOSS WILD-TYPE                                 7
D43V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  2P LOSS MUTATED     2   3   0   0
  2P LOSS WILD-TYPE 111 205  30  17
D43V6, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  T1               2               111
  T2               3               205
  T3               0                30
  T4               0                17
                   vv
clus                 N0  N1 N2+N3
  2P LOSS MUTATED     4   1     0
  2P LOSS WILD-TYPE 228  70    58
D43V7, multiclass
       clus
vv      2P LOSS MUTATED 2P LOSS WILD-TYPE
  N0                  4               228
  N1                  1                70
  N2+N3               0                58
                   vv
clus                 M0  M1 M1B  MX
  2P LOSS MUTATED     4   0   0   1
  2P LOSS WILD-TYPE 243  17   3  94
D43V8, multiclass
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  M0                4               243
  M1                0                17
  M1B               0                 3
  MX                1                94
                   vv
clus                  I  II III  IV
  2P LOSS MUTATED     3   2   0   0
  2P LOSS WILD-TYPE 195  79  65  20
D43V9, multiclass
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  I                 3               195
  II                2                79
  III               0                65
  IV                0                20
D43V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      0    5
  2P LOSS WILD-TYPE   20  345
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  NO                0                20
  YES               5               345
D43V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  2P LOSS MUTATED                                             1
  2P LOSS WILD-TYPE                                         124
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  2P LOSS MUTATED                                        1              2
  2P LOSS WILD-TYPE                                     93             82
                   vv
clus                LIFELONG NON-SMOKER
  2P LOSS MUTATED                     1
  2P LOSS WILD-TYPE                  53
D43V12, multiclass
                                             clus
vv                                            2P LOSS MUTATED 2P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               1               124
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                93
  CURRENT SMOKER                                            2                82
  LIFELONG NON-SMOKER                                       1                53
D43V13, continuous
[1] "Remove cluster labels:" "2P LOSS MUTATED"       
clus
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                2               187 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4433        TCGA-05-5420        TCGA-05-5423 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-35-4122        TCGA-35-4123 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4625        TCGA-38-4626        TCGA-38-7271 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2662        TCGA-44-2666        TCGA-44-2668 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-4112 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7672 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-8117        TCGA-44-8119        TCGA-49-4486        TCGA-49-4494 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6642        TCGA-55-6712        TCGA-55-6971 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7283        TCGA-55-7570        TCGA-55-7574        TCGA-55-7576 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7726        TCGA-55-7728        TCGA-55-7907 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8089 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8511        TCGA-55-8512        TCGA-55-8514 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A491 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-A492        TCGA-55-A493        TCGA-55-A494        TCGA-64-1677 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7979        TCGA-69-8253        TCGA-69-8255 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-7498 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-75-6214        TCGA-75-7025        TCGA-75-7027        TCGA-75-7031 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-80-5607        TCGA-80-5608 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6851        TCGA-86-7711        TCGA-86-7714 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-7954        TCGA-86-8054        TCGA-86-8055        TCGA-86-8074 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8281        TCGA-86-8673        TCGA-86-8674        TCGA-91-6829 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6836        TCGA-93-7347        TCGA-93-7348 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-8172        TCGA-97-8179        TCGA-99-7458 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-J2-8194 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-J2-A4AD        TCGA-J2-A4AG        TCGA-L4-A4E6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
                   vv
clus                 R0  R1  R2  RX
  2P LOSS MUTATED     3   0   0   0
  2P LOSS WILD-TYPE 215   9   4  13
D43V14, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  R0               3               215
  R1               0                 9
  R2               0                 4
  RX               0                13

Clustering(44) Variable = 2q loss mutation analysis
D44V1, survival
                   sevent
clus2                 0   1
  2Q LOSS MUTATED     2   0
  2Q LOSS WILD-TYPE 244  85
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                2               329 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                0                85 
$`2Q LOSS MUTATED`
TCGA-69-7760 TCGA-L4-A4E5 
        5.06         6.97 

$`2Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61         5.19        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        4.60         3.48        16.37         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       32.45        36.49        16.41         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        8.52         3.22        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       12.16         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        1.32         1.28         1.02         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 
        0.62         0.53         6.48         0.69         0.10         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 
        3.02         0.20         0.85         0.13         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 
        1.41         7.46         0.30         0.10         4.80         6.97 
TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        0.49         1.58         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 
        1.02         0.95         1.58         0.03         0.92         0.16 
TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 
        5.29        68.81        47.77        19.53        39.22        17.75 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
       56.81        20.65        39.09        55.40        37.02        44.38 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        0.69        13.87         6.12        22.68        13.61         4.24 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 
        7.56         6.05         2.30         2.93        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
       20.42        17.06       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
      104.15       223.96         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 
       13.81         0.36         0.89         0.23         1.12         0.62 
TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        0.33         0.79         1.41         0.85         0.76         0.69 
TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 
        0.53         1.12         1.45         0.56         1.28         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         0.03         1.28         1.15         0.36        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        4.18         0.92         1.02         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
        1.12         0.07         5.36         0.69         1.32         4.34 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 
        0.59         0.72         5.95         5.36         4.80         0.49 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
        8.22        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 
        3.72         9.44         9.27         7.82         2.50 

  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
             5.06              0.03 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
             6.97            223.96 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
            6.015             8.520 
[1] "5.1 - 7.0 (6.0)"   "0.0 - 224.0 (8.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
[1] "Remove cluster labels:" "2Q LOSS MUTATED"       
clus
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                2               329 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7761        TCGA-69-7763 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-71-6725        TCGA-73-4658 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-7498        TCGA-73-7499        TCGA-78-7143        TCGA-78-7145 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-7701 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-86-7953        TCGA-86-8054 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8074        TCGA-86-8075        TCGA-86-8076 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8278        TCGA-86-8279        TCGA-86-8280        TCGA-86-8585 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8        TCGA-91-6828 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6831        TCGA-91-6835 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-97-7546        TCGA-97-7547 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-97-8172        TCGA-97-8174 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-L4-A4E6 
"2Q LOSS WILD-TYPE" 
D44V2, continuous
[1] "Remove cluster labels:" "2Q LOSS MUTATED"       
clus
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                2               337 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4395 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4396        TCGA-05-4397        TCGA-05-4398        TCGA-05-4402 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4403        TCGA-05-4405        TCGA-05-4410        TCGA-05-4415 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4417        TCGA-05-4418        TCGA-05-4420        TCGA-05-4422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4424        TCGA-05-4425        TCGA-05-4426        TCGA-05-4427 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4430        TCGA-05-4432        TCGA-05-4433        TCGA-05-4434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5420        TCGA-05-5423        TCGA-05-5425        TCGA-05-5428 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-49-6767        TCGA-50-5044        TCGA-50-5045 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1594        TCGA-55-1596        TCGA-55-6642 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6979        TCGA-55-6981        TCGA-55-6985 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6987        TCGA-55-7281        TCGA-55-7283        TCGA-55-7570 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8087        TCGA-55-8089        TCGA-55-8090 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8510        TCGA-55-8511        TCGA-55-8512 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8513        TCGA-55-8514        TCGA-55-8615        TCGA-55-8616 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8619        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A491 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A492        TCGA-55-A493        TCGA-55-A494        TCGA-55-A4DG 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A470 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-4679        TCGA-67-6215 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7761        TCGA-69-7763 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-71-6725        TCGA-73-4658 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-4677 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-7498        TCGA-73-7499        TCGA-78-7143        TCGA-78-7145 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7540 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-83-5908        TCGA-86-6562 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-6851        TCGA-86-7701        TCGA-86-7711        TCGA-86-7713 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7714        TCGA-86-7953        TCGA-86-7954        TCGA-86-8054 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8074        TCGA-86-8075        TCGA-86-8076 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8278        TCGA-86-8279        TCGA-86-8280        TCGA-86-8281 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-8673 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6831        TCGA-91-6835        TCGA-91-6836 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6840        TCGA-91-6847        TCGA-91-6848        TCGA-91-6849 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-7771        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-97-7546        TCGA-97-7547 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7552        TCGA-97-7553        TCGA-97-7554        TCGA-97-7937 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7938        TCGA-97-7941        TCGA-97-8172        TCGA-97-8174 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-8177        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-99-8033        TCGA-J2-8192 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE        TCGA-J2-A4AG 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-L4-A4E6 
"2Q LOSS WILD-TYPE" 
D44V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      2    1
  2Q LOSS WILD-TYPE  201  166
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  FEMALE               2               201
  MALE                 1               166
D44V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  2Q LOSS MUTATED                            1
  2Q LOSS WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  2Q LOSS MUTATED                                   0
  2Q LOSS WILD-TYPE                                78
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2Q LOSS MUTATED                                                    2
  2Q LOSS WILD-TYPE                                                226
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  2Q LOSS MUTATED                                            0
  2Q LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  2Q LOSS MUTATED                                               0
  2Q LOSS WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  2Q LOSS MUTATED                                0
  2Q LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  2Q LOSS MUTATED                                    0
  2Q LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  2Q LOSS MUTATED                              0                             0
  2Q LOSS WILD-TYPE                            2                            16
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  2Q LOSS MUTATED                                               0
  2Q LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  2Q LOSS MUTATED                                   0
  2Q LOSS WILD-TYPE                                 7
D44V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  2Q LOSS MUTATED     1   1   1   0
  2Q LOSS WILD-TYPE 112 207  29  17
D44V6, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  T1               1               112
  T2               1               207
  T3               1                29
  T4               0                17
                   vv
clus                 N0  N1 N2+N3
  2Q LOSS MUTATED     3   0     0
  2Q LOSS WILD-TYPE 229  71    58
D44V7, multiclass
       clus
vv      2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  N0                  3               229
  N1                  0                71
  N2+N3               0                58
                   vv
clus                 M0  M1 M1B  MX
  2Q LOSS MUTATED     3   0   0   0
  2Q LOSS WILD-TYPE 244  17   3  95
D44V8, multiclass
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  M0                3               244
  M1                0                17
  M1B               0                 3
  MX                0                95
                   vv
clus                  I  II III  IV
  2Q LOSS MUTATED     2   1   0   0
  2Q LOSS WILD-TYPE 196  80  65  20
D44V9, multiclass
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  I                 2               196
  II                1                80
  III               0                65
  IV                0                20
D44V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      0    3
  2Q LOSS WILD-TYPE   20  347
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  NO                0                20
  YES               3               347
D44V11, continuous
[1] "Remove cluster labels:" "2Q LOSS MUTATED"       
clus
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                2               258 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4395 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4396        TCGA-05-4397        TCGA-05-4398        TCGA-05-4402 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4405        TCGA-05-4410        TCGA-05-4415        TCGA-05-4417 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4422        TCGA-05-4424 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4425        TCGA-05-4426        TCGA-05-4427        TCGA-05-4430 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4432        TCGA-05-4433        TCGA-05-4434        TCGA-05-5420 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5423        TCGA-05-5425        TCGA-05-5428        TCGA-35-4122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4629        TCGA-38-4631        TCGA-38-4632        TCGA-38-7271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2662        TCGA-44-2666        TCGA-44-2668 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-4112 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6148        TCGA-44-6774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7672        TCGA-44-8117        TCGA-44-8119        TCGA-49-4486 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4487        TCGA-49-4490        TCGA-49-4494        TCGA-49-4505 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4514 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-49-6767        TCGA-50-5051        TCGA-50-5072 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5931        TCGA-50-5939        TCGA-50-5941        TCGA-50-5942 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-55-1596        TCGA-55-6543        TCGA-55-6971 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6983        TCGA-55-6985        TCGA-55-7281        TCGA-55-7283 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7725        TCGA-55-7726        TCGA-55-7728 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8089        TCGA-55-8092        TCGA-55-8094 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8511 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8512        TCGA-55-8514        TCGA-55-8615        TCGA-55-8620 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A491        TCGA-55-A492        TCGA-55-A493 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A494        TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A46P        TCGA-62-A470        TCGA-62-A472        TCGA-64-1676 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1678        TCGA-64-1679        TCGA-64-1680 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-69-7761        TCGA-69-7763 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7973        TCGA-69-7974        TCGA-69-7978 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7979        TCGA-69-7980        TCGA-69-8253        TCGA-69-8254 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-8255        TCGA-73-4658        TCGA-73-4659        TCGA-73-4662 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-7498        TCGA-75-5122        TCGA-75-5125 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-5126        TCGA-75-6203        TCGA-75-6206        TCGA-75-6207 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-6214        TCGA-75-7027        TCGA-75-7031        TCGA-78-7145 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7146        TCGA-78-7147        TCGA-78-7148        TCGA-78-7149 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7150        TCGA-78-7152        TCGA-78-7153        TCGA-78-7154 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7155        TCGA-78-7156        TCGA-78-7158        TCGA-78-7159 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7160        TCGA-78-7161        TCGA-78-7162        TCGA-78-7163 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7166        TCGA-78-7167        TCGA-78-7220        TCGA-78-7535 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7536        TCGA-78-7537        TCGA-78-7539        TCGA-78-7542 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7633        TCGA-80-5607        TCGA-80-5608        TCGA-80-5611 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6851        TCGA-86-7701        TCGA-86-7711 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7714        TCGA-86-7954        TCGA-86-8054        TCGA-86-8055 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8074        TCGA-86-8281        TCGA-86-8673        TCGA-86-8674 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6829        TCGA-91-6830        TCGA-91-6835        TCGA-91-6836 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6840        TCGA-91-6849        TCGA-91-7771        TCGA-93-7347 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-93-7348        TCGA-93-8067        TCGA-95-7039        TCGA-95-7043 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-J2-8194        TCGA-J2-A4AD 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  2Q LOSS MUTATED                                             1
  2Q LOSS WILD-TYPE                                         124
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  2Q LOSS MUTATED                                        0              1
  2Q LOSS WILD-TYPE                                     94             83
                   vv
clus                LIFELONG NON-SMOKER
  2Q LOSS MUTATED                     1
  2Q LOSS WILD-TYPE                  53
D44V12, multiclass
                                             clus
vv                                            2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               1               124
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    0                94
  CURRENT SMOKER                                            1                83
  LIFELONG NON-SMOKER                                       1                53
D44V13, continuous
[1] "Remove cluster labels:" "2Q LOSS MUTATED"       
clus
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                1               188 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4433        TCGA-05-5420        TCGA-05-5423 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-35-4122        TCGA-35-4123 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4625        TCGA-38-4626        TCGA-38-7271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2662        TCGA-44-2666        TCGA-44-2668 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-4112 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7672 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-8117        TCGA-44-8119        TCGA-49-4486        TCGA-49-4494 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6642        TCGA-55-6712        TCGA-55-6971 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7283        TCGA-55-7570        TCGA-55-7574        TCGA-55-7576 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7726        TCGA-55-7728        TCGA-55-7907 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8089 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8511        TCGA-55-8512        TCGA-55-8514 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A491 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A492        TCGA-55-A493        TCGA-55-A494        TCGA-64-1677 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7979        TCGA-69-8253        TCGA-69-8255 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-7498 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-6214        TCGA-75-7025        TCGA-75-7027        TCGA-75-7031 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-80-5607        TCGA-80-5608 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6851        TCGA-86-7711        TCGA-86-7714 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7954        TCGA-86-8054        TCGA-86-8055        TCGA-86-8074 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8281        TCGA-86-8673        TCGA-86-8674        TCGA-91-6829 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6830        TCGA-91-6836        TCGA-93-7347        TCGA-93-7348 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7567        TCGA-95-7944        TCGA-95-7947 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-97-8172        TCGA-97-8174        TCGA-97-8179 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-99-7458        TCGA-99-8025        TCGA-99-8028        TCGA-99-8032 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AG        TCGA-L4-A4E6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
                   vv
clus                 R0  R1  R2  RX
  2Q LOSS MUTATED     2   0   0   0
  2Q LOSS WILD-TYPE 216   9   4  13
D44V14, multiclass
[1] "Remove cluster labels:" "2Q LOSS MUTATED"       
clus
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                2               242 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-05-4382 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4384        TCGA-05-4389        TCGA-05-4390        TCGA-05-4395 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4396        TCGA-05-4397        TCGA-05-4398        TCGA-05-4402 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4403        TCGA-05-4405        TCGA-05-4410        TCGA-05-4415 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4417        TCGA-05-4418        TCGA-05-4420        TCGA-05-4422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4424        TCGA-05-4425        TCGA-05-4426        TCGA-05-4427 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4430        TCGA-05-4432        TCGA-05-4433        TCGA-05-4434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5420        TCGA-05-5423        TCGA-05-5425        TCGA-05-5428 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2657        TCGA-44-2659 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2661        TCGA-44-2662        TCGA-44-2665        TCGA-44-2666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2668        TCGA-44-3396        TCGA-44-3398        TCGA-44-3918 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-44-6144        TCGA-44-6148 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4514        TCGA-49-6744 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6767        TCGA-50-5055        TCGA-50-5066        TCGA-53-7624 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-53-7626        TCGA-55-1592        TCGA-55-1594        TCGA-55-1596 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-7570        TCGA-55-7574        TCGA-55-7576 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7726        TCGA-55-7727        TCGA-55-7728 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7815        TCGA-55-7903        TCGA-55-7907        TCGA-55-7910 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7911        TCGA-55-7914        TCGA-55-8087        TCGA-55-8089 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8090        TCGA-55-8092        TCGA-55-8094        TCGA-55-8097 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8299        TCGA-55-8301        TCGA-55-8510        TCGA-55-8511 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8512        TCGA-55-8513        TCGA-55-8514        TCGA-55-8615 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8616        TCGA-55-8619        TCGA-55-8620        TCGA-55-8621 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A491        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-4679        TCGA-67-6215        TCGA-67-6216 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-71-6725        TCGA-73-4658        TCGA-73-4659 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4675        TCGA-73-4676        TCGA-73-4677        TCGA-73-7498 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-7499        TCGA-75-5122        TCGA-75-5125        TCGA-75-5126 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-5146        TCGA-75-5147        TCGA-75-6203        TCGA-75-6205 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-6206        TCGA-75-6207        TCGA-75-6212        TCGA-75-6214 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-75-7025        TCGA-75-7027        TCGA-75-7030        TCGA-75-7031 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7143        TCGA-78-7145        TCGA-78-7146        TCGA-78-7147 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7148        TCGA-78-7149        TCGA-78-7150        TCGA-78-7152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7153        TCGA-78-7154        TCGA-78-7155        TCGA-78-7156 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7158        TCGA-78-7159        TCGA-78-7160        TCGA-78-7161 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7162        TCGA-78-7163        TCGA-78-7166        TCGA-78-7167 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7220        TCGA-78-7535        TCGA-78-7536        TCGA-78-7537 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7539        TCGA-78-7540        TCGA-78-7542        TCGA-78-7633 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-80-5607        TCGA-80-5608        TCGA-80-5611        TCGA-83-5908 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-6562        TCGA-86-7701        TCGA-86-7711        TCGA-86-7713 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7953        TCGA-86-7954        TCGA-86-8054        TCGA-86-8055 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8074        TCGA-86-8075        TCGA-86-8076        TCGA-86-8278 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8279        TCGA-86-8280        TCGA-86-8585        TCGA-86-8668 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8671        TCGA-86-8673        TCGA-86-8674        TCGA-93-7347 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-93-7348        TCGA-93-8067        TCGA-95-7944        TCGA-95-7947 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7948        TCGA-99-7458        TCGA-99-8025        TCGA-99-8028 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-99-8032        TCGA-99-8033        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 

Clustering(45) Variable = 3p loss mutation analysis
D45V1, survival
                   sevent
clus2                 0   1
  3P LOSS MUTATED    47  20
  3P LOSS WILD-TYPE 199  65
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               67               264 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               20                65 
$`3P LOSS MUTATED`
TCGA-05-4397 TCGA-05-4415 TCGA-05-4432 TCGA-05-5715 TCGA-38-6178 TCGA-44-6144 
       24.03         2.96        25.02         2.04         5.19         0.30 
TCGA-44-6776 TCGA-44-7660 TCGA-44-7670 TCGA-44-8117 TCGA-44-8119 TCGA-49-4505 
       63.72         5.33        17.46         8.52         3.22        14.07 
TCGA-49-4514 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
       43.20         8.78        35.87        21.47         8.45        15.12 
TCGA-50-6591 TCGA-50-6594 TCGA-53-7624 TCGA-53-7626 TCGA-55-1594 TCGA-55-1596 
        3.88        12.16        35.11        31.89        38.73        45.17 
TCGA-55-6968 TCGA-55-6975 TCGA-55-7283 TCGA-55-7576 TCGA-55-7907 TCGA-55-7910 
       42.48         3.88         1.12         1.32         0.53         6.48 
TCGA-55-7914 TCGA-55-8094 TCGA-55-8514 TCGA-55-8616 TCGA-55-A492 TCGA-62-A46O 
        0.10         0.13         6.97         1.58         0.03        47.77 
TCGA-62-A46P TCGA-62-A470 TCGA-64-1676 TCGA-64-1678 TCGA-64-5774 TCGA-64-5779 
       19.53        39.22        56.81        39.09        83.84        16.67 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-6217 TCGA-69-7973 TCGA-69-7979 
        7.33         0.99         0.59        13.87         7.56         2.93 
TCGA-69-8253 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-78-7146 TCGA-78-7148 
        3.25        29.95        20.28         0.46         5.65        20.58 
TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7539 TCGA-86-8054 TCGA-86-8278 
       88.11        31.20         8.02        10.75         0.62         0.76 
TCGA-91-6847 TCGA-91-7771 TCGA-95-7039 TCGA-95-7043 TCGA-95-7947 TCGA-95-7948 
       26.93         1.02         1.12         0.07         1.32         4.34 
TCGA-L4-A4E5 
        6.97 

$`3P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        20.05        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 
        1.02         4.96         2.96         0.99         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-7271 TCGA-38-A44F 
       28.37        35.28        11.64        44.61        26.30         4.37 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6145 
        6.21         4.60         3.48        16.37         6.84         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 
        9.93         7.76         3.12         5.42         2.70        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       36.49        16.41         9.80         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       18.87        17.59        13.74        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       29.75        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5933 TCGA-50-5941 TCGA-50-5942 
       49.28         8.05         9.27        77.88         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       12.26        11.47        42.31        25.51        11.05         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7813 TCGA-55-1592 TCGA-55-1595 
       33.37         0.72         8.38        13.74        23.05        48.62 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 
        2.86         0.07        32.61         0.79        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
        0.92        48.49         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.59         0.13         3.12         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7911 TCGA-55-8087 TCGA-55-8089 
        0.79         1.78         0.62         0.69         0.69         3.02 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.20         0.85         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8619 TCGA-55-8620 
        0.30         0.10         4.80         0.49         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A493 
        3.45         1.08         1.02         0.95         1.58         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A472 TCGA-64-1677 TCGA-64-1679 
        0.16         5.29        68.81        17.75        20.65        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-67-3771 
       37.02        44.38         0.10        30.44        39.52         1.97 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7760 TCGA-69-7761 
        2.04         0.59         0.89         0.69         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 
       22.68        13.61         4.24         6.05         2.30        12.56 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4668 
        2.50         4.21         2.01        52.57        23.38        15.35 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        1.32         4.01         1.25        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7147 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       27.16        19.27        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 
        7.04       104.15       223.96         8.48        26.53        53.33 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       28.96        10.55        32.68        13.81         0.36         0.89 
TCGA-86-7713 TCGA-86-7953 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
        0.23         1.12         0.33         0.79         1.41         0.85 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 
        0.69         0.53         1.12         1.45         0.56         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7567 
        4.18         0.92         9.76         4.18         6.08         5.36 
TCGA-95-7944 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        0.69        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 
        5.95         0.59         0.72         5.95         5.36         4.80 
TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        0.49         8.22        14.04        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 
        5.03         3.72         9.44         9.27         7.82         2.50 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             0.03              0.03 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            88.11            223.96 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            8.020             8.665 
[1] "0.0 - 88.1 (8.0)"  "0.0 - 224.0 (8.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     42   34
  3P LOSS WILD-TYPE  161  133
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  FEMALE              42               161
  MALE                34               133
D45V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  3P LOSS MUTATED                            4
  3P LOSS WILD-TYPE                          7
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  3P LOSS MUTATED                                  18
  3P LOSS WILD-TYPE                                60
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3P LOSS MUTATED                                                   48
  3P LOSS WILD-TYPE                                                180
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  3P LOSS MUTATED                                            0
  3P LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  3P LOSS MUTATED                                               2
  3P LOSS WILD-TYPE                                            14
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  3P LOSS MUTATED                                0
  3P LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  3P LOSS MUTATED                                    0
  3P LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  3P LOSS MUTATED                              0                             2
  3P LOSS WILD-TYPE                            2                            14
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  3P LOSS MUTATED                                               0
  3P LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  3P LOSS MUTATED                                   2
  3P LOSS WILD-TYPE                                 5
D45V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  3P LOSS MUTATED    21  48   5   2
  3P LOSS WILD-TYPE  92 160  25  15
D45V6, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  T1              21                92
  T2              48               160
  T3               5                25
  T4               2                15
                   vv
clus                 N0  N1 N2+N3
  3P LOSS MUTATED    48  18    10
  3P LOSS WILD-TYPE 184  53    48
D45V7, multiclass
       clus
vv      3P LOSS MUTATED 3P LOSS WILD-TYPE
  N0                 48               184
  N1                 18                53
  N2+N3              10                48
                   vv
clus                 M0  M1 M1B  MX
  3P LOSS MUTATED    52   6   1  15
  3P LOSS WILD-TYPE 195  11   2  80
D45V8, multiclass
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  M0               52               195
  M1                6                11
  M1B               1                 2
  MX               15                80
                   vv
clus                  I  II III  IV
  3P LOSS MUTATED    35  24  10   6
  3P LOSS WILD-TYPE 163  57  55  14
D45V9, multiclass
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  I                35               163
  II               24                57
  III              10                55
  IV                6                14
D45V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED      4   72
  3P LOSS WILD-TYPE   16  278
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO                4                16
  YES              72               278
D45V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  3P LOSS MUTATED                                            23
  3P LOSS WILD-TYPE                                         102
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  3P LOSS MUTATED                                       19             24
  3P LOSS WILD-TYPE                                     75             60
                   vv
clus                LIFELONG NON-SMOKER
  3P LOSS MUTATED                     6
  3P LOSS WILD-TYPE                  48
D45V12, multiclass
                                             clus
vv                                            3P LOSS MUTATED 3P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              23               102
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   19                75
  CURRENT SMOKER                                           24                60
  LIFELONG NON-SMOKER                                       6                48
D45V13, continuous
                   vv
clus                 R0  R1  R2  RX
  3P LOSS MUTATED    49   1   0   2
  3P LOSS WILD-TYPE 169   8   4  11
D45V14, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  R0              49               169
  R1               1                 8
  R2               0                 4
  RX               2                11

Clustering(46) Variable = 3q loss mutation analysis
D46V1, survival
                   sevent
clus2                 0   1
  3Q LOSS MUTATED    29  12
  3Q LOSS WILD-TYPE 217  73
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               41               290 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               12                73 
$`3Q LOSS MUTATED`
TCGA-05-4415 TCGA-05-4432 TCGA-05-5715 TCGA-44-6144 TCGA-44-6776 TCGA-44-8117 
        2.96        25.02         2.04         0.30        63.72         8.52 
TCGA-44-8119 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-6591 TCGA-50-6594 
        3.22        35.87        21.47         8.45         3.88        12.16 
TCGA-55-6975 TCGA-55-7283 TCGA-55-7576 TCGA-55-8094 TCGA-55-8514 TCGA-55-8616 
        3.88         1.12         1.32         0.13         6.97         1.58 
TCGA-55-A492 TCGA-62-A46P TCGA-62-A470 TCGA-64-1678 TCGA-64-5774 TCGA-64-5779 
        0.03        19.53        39.22        39.09        83.84        16.67 
TCGA-67-3770 TCGA-67-3772 TCGA-69-8253 TCGA-73-4662 TCGA-78-7148 TCGA-78-7167 
        0.99         0.59         3.25        29.95        20.58        88.11 
TCGA-78-7535 TCGA-78-7539 TCGA-86-7713 TCGA-86-8054 TCGA-91-6847 TCGA-91-7771 
       31.20        10.75         0.23         0.62        26.93         1.02 
TCGA-95-7039 TCGA-95-7948 TCGA-97-8172 TCGA-J2-8194 TCGA-L4-A4E5 
        1.12         4.34         5.95         3.72         6.97 

$`3Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 
       24.03        47.05         8.02        20.05        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       29.95        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 
       15.02         1.02         4.96         2.96         0.99         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        8.32         6.44         6.21         4.60         3.48        16.37 
TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        6.84         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 
        2.70        32.45        36.49        16.41         9.80         5.33 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
        5.03         1.64        18.31        18.87        17.46        17.59 
TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       13.74        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5939 
       49.28         8.05         9.27         8.78        77.88        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 
        9.37         4.44        12.26        11.47        42.31        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       11.05         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       15.25         0.92        48.49         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7726 
       38.47         0.59         0.13         3.12         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.69         0.10         0.69         3.02         0.20         0.85 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8615 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        4.80         0.49         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        1.02         0.95         1.58         0.92         0.16         5.29 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 
       68.81        47.77        17.75        56.81        20.65        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 
       37.02        44.38         0.10        30.44        39.52         7.33 
TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        1.97         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
        5.06         6.12        22.68        13.61         4.24         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8254 TCGA-69-8255 
        6.05         2.30         2.93        12.56         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        23.38        20.28        15.35         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        1.32         4.01         1.25        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
       27.16         5.65        19.27        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 
       22.29         7.04       104.15       223.96         8.48        26.53 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
        8.02        53.33        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7953 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 
        0.36         0.89         1.12         0.33         0.79         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 
        0.85         0.76         0.69         0.53         1.12         1.45 
TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.56         1.28         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 
        1.15         0.36         4.18         0.92         9.76         4.18 
TCGA-93-8067 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 
        6.08         0.07         5.36         0.69         1.32        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 
        0.72         5.36         4.80         0.49         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-A4AD TCGA-J2-A4AE 
       15.06         1.45         5.56         5.03         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E6 
        7.82         2.50 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             0.03              0.03 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            88.11            223.96 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            5.950             8.795 
[1] "0.0 - 88.1 (6.0)"  "0.0 - 224.0 (8.8)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED     24   22
  3Q LOSS WILD-TYPE  179  145
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  FEMALE              24               179
  MALE                22               145
D46V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  3Q LOSS MUTATED                            4
  3Q LOSS WILD-TYPE                          7
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  3Q LOSS MUTATED                                  11
  3Q LOSS WILD-TYPE                                67
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3Q LOSS MUTATED                                                   27
  3Q LOSS WILD-TYPE                                                201
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  3Q LOSS MUTATED                                            0
  3Q LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  3Q LOSS MUTATED                                               2
  3Q LOSS WILD-TYPE                                            14
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  3Q LOSS MUTATED                                0
  3Q LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  3Q LOSS MUTATED                                    0
  3Q LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  3Q LOSS MUTATED                              0                             1
  3Q LOSS WILD-TYPE                            2                            15
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  3Q LOSS MUTATED                                               0
  3Q LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  3Q LOSS MUTATED                                   1
  3Q LOSS WILD-TYPE                                 6
D46V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  3Q LOSS MUTATED     9  29   6   2
  3Q LOSS WILD-TYPE 104 179  24  15
D46V6, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  T1               9               104
  T2              29               179
  T3               6                24
  T4               2                15
                   vv
clus                 N0  N1 N2+N3
  3Q LOSS MUTATED    34   7     5
  3Q LOSS WILD-TYPE 198  64    53
D46V7, multiclass
       clus
vv      3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  N0                 34               198
  N1                  7                64
  N2+N3               5                53
                   vv
clus                 M0  M1 M1B  MX
  3Q LOSS MUTATED    34   2   1   8
  3Q LOSS WILD-TYPE 213  15   2  87
D46V8, multiclass
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  M0               34               213
  M1                2                15
  M1B               1                 2
  MX                8                87
                   vv
clus                  I  II III  IV
  3Q LOSS MUTATED    24  13   5   3
  3Q LOSS WILD-TYPE 174  68  60  17
D46V9, multiclass
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  I                24               174
  II               13                68
  III               5                60
  IV                3                17
D46V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      2   44
  3Q LOSS WILD-TYPE   18  306
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO                2                18
  YES              44               306
D46V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  3Q LOSS MUTATED                                            15
  3Q LOSS WILD-TYPE                                         110
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  3Q LOSS MUTATED                                       12             11
  3Q LOSS WILD-TYPE                                     82             73
                   vv
clus                LIFELONG NON-SMOKER
  3Q LOSS MUTATED                     5
  3Q LOSS WILD-TYPE                  49
D46V12, multiclass
                                             clus
vv                                            3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              15               110
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   12                82
  CURRENT SMOKER                                           11                73
  LIFELONG NON-SMOKER                                       5                49
D46V13, continuous
                   vv
clus                 R0  R1  R2  RX
  3Q LOSS MUTATED    28   0   0   1
  3Q LOSS WILD-TYPE 190   9   4  12
D46V14, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  R0              28               190
  R1               0                 9
  R2               0                 4
  RX               1                12

Clustering(47) Variable = 4p loss mutation analysis
D47V1, survival
                   sevent
clus2                 0   1
  4P LOSS MUTATED    27   5
  4P LOSS WILD-TYPE 219  80
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               32               299 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
                5                80 
$`4P LOSS MUTATED`
TCGA-05-4397 TCGA-05-4398 TCGA-05-4405 TCGA-05-4420 TCGA-35-5375 TCGA-38-4625 
       24.03        47.05        20.05        29.95         8.68        47.61 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6146 TCGA-44-7660 TCGA-44-8117 TCGA-50-5051 
        3.48        16.37         9.93         5.33         8.52        14.96 
TCGA-50-5936 TCGA-53-7626 TCGA-55-1596 TCGA-55-6968 TCGA-55-7910 TCGA-55-8514 
        8.45        31.89        45.17        42.48         6.48         6.97 
TCGA-55-8615 TCGA-55-8616 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-69-7973 
        0.49         1.58        30.44        16.67         7.33         7.56 
TCGA-69-7979 TCGA-73-4659 TCGA-73-4670 TCGA-78-7536 TCGA-86-7713 TCGA-91-6831 
        2.93        23.38         0.46         8.02         0.23         1.28 
TCGA-95-7043 TCGA-L4-A4E5 
        0.07         6.97 

$`4P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 
        8.02         2.96        14.93         8.98        30.02        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        5.95        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61         5.19        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 TCGA-44-6148 
        4.60         6.84         0.30         3.35         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        9.80         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       17.59        13.74         3.22        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 
        4.93         0.03        20.48        71.47        48.82        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7813 
        6.21        33.37         0.72         8.38        35.11        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
        0.79        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.13         3.12         1.32         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 
        0.79         1.78         0.62         0.53         0.69         0.10 
TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 
        0.69         3.02         0.20         0.85         0.13         0.49 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        7.07         1.41         7.46         0.30         0.10         4.80 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.61         2.14         3.45         1.08         1.02         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 
        1.58         0.03         0.92         0.16         5.29        68.81 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
       47.77        19.53        39.22        17.75        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.89         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 
       13.61         4.24         6.05         2.30        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 
        2.50         4.21         2.01        52.57        29.95        20.28 
TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
       15.35         1.32         4.01         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
      163.10        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7537 TCGA-78-7539 
        8.48        88.11        26.53        31.20        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       28.96        10.55        32.68        13.81         0.36         0.89 
TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
        1.12         0.62         0.33         0.79         1.41         0.85 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 
        0.76         0.69         0.53         1.12         1.45         0.56 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 
        1.28         1.22        41.33         0.03         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
        6.08         1.12         5.36         0.69         1.32         4.34 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 
        0.59         0.72         5.95         5.36         4.80         0.49 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
        8.22        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 
        3.72         9.44         9.27         7.82         2.50 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             0.07              0.03 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            47.61            223.96 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            8.485             8.480 
[1] "0.1 - 47.6 (8.5)"  "0.0 - 224.0 (8.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     17   17
  4P LOSS WILD-TYPE  186  150
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  FEMALE              17               186
  MALE                17               150
D47V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  4P LOSS MUTATED                            2
  4P LOSS WILD-TYPE                          9
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  4P LOSS MUTATED                                   7
  4P LOSS WILD-TYPE                                71
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4P LOSS MUTATED                                                   22
  4P LOSS WILD-TYPE                                                206
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  4P LOSS MUTATED                                            0
  4P LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  4P LOSS MUTATED                                               1
  4P LOSS WILD-TYPE                                            15
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  4P LOSS MUTATED                                0
  4P LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  4P LOSS MUTATED                                    0
  4P LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  4P LOSS MUTATED                              1                             0
  4P LOSS WILD-TYPE                            1                            16
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  4P LOSS MUTATED                                               0
  4P LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  4P LOSS MUTATED                                   1
  4P LOSS WILD-TYPE                                 6
D47V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  4P LOSS MUTATED     6  25   2   1
  4P LOSS WILD-TYPE 107 183  28  16
D47V6, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  T1               6               107
  T2              25               183
  T3               2                28
  T4               1                16
                   vv
clus                 N0  N1 N2+N3
  4P LOSS MUTATED    21   4     9
  4P LOSS WILD-TYPE 211  67    49
D47V7, multiclass
       clus
vv      4P LOSS MUTATED 4P LOSS WILD-TYPE
  N0                 21               211
  N1                  4                67
  N2+N3               9                49
                   vv
clus                 M0  M1 M1B  MX
  4P LOSS MUTATED    23   2   0   8
  4P LOSS WILD-TYPE 224  15   3  87
D47V8, multiclass
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  M0               23               224
  M1                2                15
  M1B               0                 3
  MX                8                87
                   vv
clus                  I  II III  IV
  4P LOSS MUTATED    18   6   9   1
  4P LOSS WILD-TYPE 180  75  56  19
D47V9, multiclass
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  I                18               180
  II                6                75
  III               9                56
  IV                1                19
D47V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED      3   31
  4P LOSS WILD-TYPE   17  319
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO                3                17
  YES              31               319
D47V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  4P LOSS MUTATED                                            14
  4P LOSS WILD-TYPE                                         111
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  4P LOSS MUTATED                                        6             12
  4P LOSS WILD-TYPE                                     88             72
                   vv
clus                LIFELONG NON-SMOKER
  4P LOSS MUTATED                     1
  4P LOSS WILD-TYPE                  53
D47V12, multiclass
                                             clus
vv                                            4P LOSS MUTATED 4P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              14               111
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    6                88
  CURRENT SMOKER                                           12                72
  LIFELONG NON-SMOKER                                       1                53
D47V13, continuous
                   vv
clus                 R0  R1  R2  RX
  4P LOSS MUTATED    21   0   0   0
  4P LOSS WILD-TYPE 197   9   4  13
D47V14, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  R0              21               197
  R1               0                 9
  R2               0                 4
  RX               0                13

Clustering(48) Variable = 4q loss mutation analysis
D48V1, survival
                   sevent
clus2                 0   1
  4Q LOSS MUTATED    29   9
  4Q LOSS WILD-TYPE 217  76
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               38               293 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
                9                76 
$`4Q LOSS MUTATED`
TCGA-05-4398 TCGA-05-4405 TCGA-05-4420 TCGA-35-5375 TCGA-44-5643 TCGA-44-5644 
       47.05        20.05        29.95         8.68         3.48        16.37 
TCGA-44-7660 TCGA-50-5051 TCGA-50-5936 TCGA-50-7109 TCGA-55-1592 TCGA-55-1594 
        5.33        14.96         8.45         8.38        23.05        38.73 
TCGA-55-1596 TCGA-55-6968 TCGA-55-7910 TCGA-55-8094 TCGA-55-8514 TCGA-55-8616 
       45.17        42.48         6.48         0.13         6.97         1.58 
TCGA-55-A492 TCGA-62-A46O TCGA-64-5778 TCGA-64-5779 TCGA-69-7764 TCGA-69-7973 
        0.03        47.77        30.44        16.67        13.61         7.56 
TCGA-69-7979 TCGA-69-8255 TCGA-73-4659 TCGA-73-4662 TCGA-73-4670 TCGA-78-7167 
        2.93         4.21        23.38        29.95         0.46        88.11 
TCGA-78-7535 TCGA-78-7536 TCGA-86-7713 TCGA-91-6829 TCGA-91-6831 TCGA-91-6847 
       31.20         8.02         0.23        41.33         1.28        26.93 
TCGA-95-7043 TCGA-L4-A4E5 
        0.07         6.97 

$`4Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
       24.03         8.02         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       28.37        35.28        11.64        44.61         5.19        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        4.37        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.44         6.21         4.60         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 
       32.45        36.49        16.41         9.80         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
       18.31        18.87        17.46        17.59        13.74         8.52 
TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        3.22        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        48.82        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1595 TCGA-55-5899 
        0.72        35.11        31.89        13.74        48.62         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
        0.07        32.61         0.79        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.02         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.69         0.10         0.69         3.02         0.20         0.85 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8615 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        4.80         0.49         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        1.02         0.95         1.58         0.92         0.16         5.29 
TCGA-62-8399 TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
       68.81        19.53        39.22        17.75        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 
       22.68         4.24         6.05         2.30        12.56         3.25 
TCGA-69-8254 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 
        2.50         2.01        52.57        20.28        15.35         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
        4.01         1.25        20.42        17.06       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
        5.65        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 
       22.29         7.04       104.15       223.96         8.48        26.53 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 
        0.36         0.89         1.12         0.62         0.33         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 
        1.41         0.85         0.76         0.69         0.53         1.12 
TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6830 TCGA-91-6835 
        1.45         0.56         1.28         1.22         0.03         1.15 
TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
        0.36         4.18         0.92         1.02         9.76         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
        6.08         1.12         5.36         0.69         1.32         4.34 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        47.18        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 
        0.59         0.72         5.95         5.36         4.80         0.49 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
        8.22        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 
        3.72         9.44         9.27         7.82         2.50 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             0.03              0.03 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            88.11            223.96 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           11.145             8.320 
[1] "0.0 - 88.1 (11.1)" "0.0 - 224.0 (8.3)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     18   23
  4Q LOSS WILD-TYPE  185  144
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  FEMALE              18               185
  MALE                23               144
D48V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  4Q LOSS MUTATED                            2
  4Q LOSS WILD-TYPE                          9
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  4Q LOSS MUTATED                                   7
  4Q LOSS WILD-TYPE                                71
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4Q LOSS MUTATED                                                   27
  4Q LOSS WILD-TYPE                                                201
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  4Q LOSS MUTATED                                            0
  4Q LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  4Q LOSS MUTATED                                               2
  4Q LOSS WILD-TYPE                                            14
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  4Q LOSS MUTATED                                0
  4Q LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  4Q LOSS MUTATED                                    0
  4Q LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  4Q LOSS MUTATED                              0                             1
  4Q LOSS WILD-TYPE                            2                            15
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  4Q LOSS MUTATED                                               1
  4Q LOSS WILD-TYPE                                             2
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  4Q LOSS MUTATED                                   1
  4Q LOSS WILD-TYPE                                 6
D48V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  4Q LOSS MUTATED    10  29   0   2
  4Q LOSS WILD-TYPE 103 179  30  15
D48V6, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  T1              10               103
  T2              29               179
  T3               0                30
  T4               2                15
                   vv
clus                 N0  N1 N2+N3
  4Q LOSS MUTATED    30   1    10
  4Q LOSS WILD-TYPE 202  70    48
D48V7, multiclass
       clus
vv      4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  N0                 30               202
  N1                  1                70
  N2+N3              10                48
                   vv
clus                 M0  M1 M1B  MX
  4Q LOSS MUTATED    25   3   1  11
  4Q LOSS WILD-TYPE 222  14   2  84
D48V8, multiclass
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  M0               25               222
  M1                3                14
  M1B               1                 2
  MX               11                84
                   vv
clus                  I  II III  IV
  4Q LOSS MUTATED    26   2  10   3
  4Q LOSS WILD-TYPE 172  79  55  17
D48V9, multiclass
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  I                26               172
  II                2                79
  III              10                55
  IV                3                17
D48V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED      4   37
  4Q LOSS WILD-TYPE   16  313
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO                4                16
  YES              37               313
D48V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  4Q LOSS MUTATED                                            15
  4Q LOSS WILD-TYPE                                         110
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  4Q LOSS MUTATED                                        8             15
  4Q LOSS WILD-TYPE                                     86             69
                   vv
clus                LIFELONG NON-SMOKER
  4Q LOSS MUTATED                     2
  4Q LOSS WILD-TYPE                  52
D48V12, multiclass
                                             clus
vv                                            4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              15               110
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    8                86
  CURRENT SMOKER                                           15                69
  LIFELONG NON-SMOKER                                       2                52
D48V13, continuous
                   vv
clus                 R0  R1  R2  RX
  4Q LOSS MUTATED    25   0   0   0
  4Q LOSS WILD-TYPE 193   9   4  13
D48V14, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  R0              25               193
  R1               0                 9
  R2               0                 4
  RX               0                13

Clustering(49) Variable = 5p loss mutation analysis
D49V1, survival
                   sevent
clus2                 0   1
  5P LOSS MUTATED     7   3
  5P LOSS WILD-TYPE 239  82
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               10               321 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                3                82 
$`5P LOSS MUTATED`
TCGA-55-1596 TCGA-55-6968 TCGA-55-6975 TCGA-64-5779 TCGA-69-7979 TCGA-78-7161 
       45.17        42.48         3.88        16.67         2.93         7.04 
TCGA-78-7167 TCGA-86-8074 TCGA-95-7043 TCGA-95-7567 
       88.11         0.79         0.07         5.36 

$`5P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61         5.19        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        4.60         3.48        16.37         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       32.45        36.49        16.41         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        8.52         3.22        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       12.16         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 
       31.89        13.74        23.05        38.73        48.62         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
        0.07        32.61         0.79        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
       48.49         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.69         0.10         0.69         3.02         0.20         0.85 
TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 
        0.13         0.49         7.07         1.41         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
        0.10         4.80         6.97         0.49         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 
        2.14         3.45         1.08         1.02         0.95         1.58 
TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O 
        0.03         0.92         0.16         5.29        68.81        47.77 
TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
       19.53        39.22        17.75        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       55.40        37.02        44.38        83.84         0.10        30.44 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
       22.68        13.61         4.24         7.56         6.05         2.30 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
       12.56         3.25         2.50         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
        4.01         1.25        20.42        17.06       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
        5.65        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7535 
       22.29       104.15       223.96         8.48        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 
       13.81         0.36         0.89         0.23         1.12         0.62 
TCGA-86-8055 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 
        0.33         1.41         0.85         0.76         0.69         0.53 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        1.12         1.45         0.56         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        0.03         1.28         1.15         0.36        26.93         4.18 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        0.92         1.02         9.76         4.18         6.08         1.12 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.69         1.32         4.34        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 
       43.76         8.65         5.95         0.59         0.72         5.95 
TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        5.36         4.80         0.49         8.22        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        1.45         5.56         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        7.82         6.97         2.50 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             0.07              0.03 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
            88.11            223.96 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             6.20              8.52 
[1] "0.1 - 88.1 (6.2)"  "0.0 - 224.0 (8.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      4    8
  5P LOSS WILD-TYPE  199  159
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  FEMALE               4               199
  MALE                 8               159
D49V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  5P LOSS MUTATED                            2
  5P LOSS WILD-TYPE                          9
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  5P LOSS MUTATED                                   5
  5P LOSS WILD-TYPE                                73
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5P LOSS MUTATED                                                    3
  5P LOSS WILD-TYPE                                                225
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  5P LOSS MUTATED                                            0
  5P LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  5P LOSS MUTATED                                               0
  5P LOSS WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  5P LOSS MUTATED                                0
  5P LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  5P LOSS MUTATED                                    0
  5P LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  5P LOSS MUTATED                              0                             2
  5P LOSS WILD-TYPE                            2                            14
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  5P LOSS MUTATED                                               0
  5P LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  5P LOSS MUTATED                                   0
  5P LOSS WILD-TYPE                                 7
D49V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  5P LOSS MUTATED     4   7   1   0
  5P LOSS WILD-TYPE 109 201  29  17
D49V6, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  T1               4               109
  T2               7               201
  T3               1                29
  T4               0                17
                   vv
clus                 N0  N1 N2+N3
  5P LOSS MUTATED     7   4     1
  5P LOSS WILD-TYPE 225  67    57
D49V7, multiclass
       clus
vv      5P LOSS MUTATED 5P LOSS WILD-TYPE
  N0                  7               225
  N1                  4                67
  N2+N3               1                57
                   vv
clus                 M0  M1 M1B  MX
  5P LOSS MUTATED     8   2   0   2
  5P LOSS WILD-TYPE 239  15   3  93
D49V8, multiclass
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  M0                8               239
  M1                2                15
  M1B               0                 3
  MX                2                93
                   vv
clus                  I  II III  IV
  5P LOSS MUTATED     6   4   1   1
  5P LOSS WILD-TYPE 192  77  64  19
D49V9, multiclass
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  I                 6               192
  II                4                77
  III               1                64
  IV                1                19
D49V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      0   12
  5P LOSS WILD-TYPE   20  338
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO                0                20
  YES              12               338
D49V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  5P LOSS MUTATED                                             4
  5P LOSS WILD-TYPE                                         121
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  5P LOSS MUTATED                                        2              6
  5P LOSS WILD-TYPE                                     92             78
                   vv
clus                LIFELONG NON-SMOKER
  5P LOSS MUTATED                     0
  5P LOSS WILD-TYPE                  54
D49V12, multiclass
                                             clus
vv                                            5P LOSS MUTATED 5P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4               121
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                92
  CURRENT SMOKER                                            6                78
  LIFELONG NON-SMOKER                                       0                54
D49V13, continuous
                   vv
clus                 R0  R1  R2  RX
  5P LOSS MUTATED     6   1   0   0
  5P LOSS WILD-TYPE 212   8   4  13
D49V14, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  R0               6               212
  R1               1                 8
  R2               0                 4
  RX               0                13

Clustering(50) Variable = 5q loss mutation analysis
D50V1, survival
                   sevent
clus2                 0   1
  5Q LOSS MUTATED    32  10
  5Q LOSS WILD-TYPE 214  75
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               42               289 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               10                75 
$`5Q LOSS MUTATED`
TCGA-05-4396 TCGA-05-4405 TCGA-05-4427 TCGA-05-5715 TCGA-38-4630 TCGA-44-5643 
        9.96        20.05        26.01         2.04        35.28         3.48 
TCGA-44-5644 TCGA-44-6144 TCGA-44-6146 TCGA-44-7660 TCGA-44-7670 TCGA-49-4505 
       16.37         0.30         9.93         5.33        17.46        14.07 
TCGA-53-7624 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6968 
       35.11        23.05        38.73        45.17         2.86        42.48 
TCGA-55-6975 TCGA-55-7281 TCGA-55-8094 TCGA-55-8616 TCGA-62-A46O TCGA-62-A470 
        3.88         0.59         0.13         1.58        47.77        39.22 
TCGA-64-1676 TCGA-64-5778 TCGA-64-5779 TCGA-69-7765 TCGA-69-7979 TCGA-73-4668 
       56.81        30.44        16.67         4.24         2.93        15.35 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7161 TCGA-78-7167 TCGA-86-7953 TCGA-86-8074 
       35.93        21.86         7.04        88.11         1.12         0.79 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7948 TCGA-97-7937 TCGA-J2-A4AD 
        1.12         0.07         5.36         4.34         5.95         9.44 

$`5Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 
        1.02         4.96         2.96         0.99         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F 
       28.37        11.64        44.61         5.19        26.30         4.37 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6145 TCGA-44-6147 TCGA-44-6148 
        6.21         4.60         6.84         3.35         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
        5.42         2.70        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7671 
        9.80         5.03         1.64        18.31        18.87        17.59 
TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       13.74         8.52         3.22        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 
       12.16         6.21        33.37         0.72         8.38        31.89 
TCGA-53-7813 TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 
       13.74        48.62         0.07        32.61         0.79        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       15.25         0.92        48.49         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
       38.47         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.02         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        6.48         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 
        0.85         0.49         7.07         1.41         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8619 TCGA-55-8620 
        0.10         4.80         6.97         0.49         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46P TCGA-62-A472 
        0.92         0.16         5.29        68.81        19.53        17.75 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
        0.10        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        2.04         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
        6.12        22.68        13.61         7.56         6.05         2.30 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
       12.56         3.25         2.50         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28         0.46         1.32         4.01 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.25        20.42        17.06       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       19.27        20.58        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 
       32.09         5.88        40.11        22.29       104.15       223.96 
TCGA-78-7166 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
        8.48        26.53        31.20         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       28.96        10.55        32.68        13.81         0.36         0.89 
TCGA-86-7713 TCGA-86-8054 TCGA-86-8055 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.23         0.62         0.33         1.41         0.85         0.76 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 
        0.69         0.53         1.12         1.45         0.56         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
       26.93         4.18         0.92         1.02         9.76         4.18 
TCGA-93-8067 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        6.08         0.69         1.32        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 
       43.76         8.65         0.59         0.72         5.95         5.36 
TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        4.80         0.49         8.22        14.04        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        5.56         5.03         3.72         9.27         7.82         6.97 
TCGA-L4-A4E6 
        2.50 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             0.07              0.03 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            88.11            223.96 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            9.945             8.380 
[1] "0.1 - 88.1 (9.9)"  "0.0 - 224.0 (8.4)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     21   27
  5Q LOSS WILD-TYPE  182  140
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  FEMALE              21               182
  MALE                27               140
D50V4, continuous
[1] "Remove cluster labels:" "5Q LOSS MUTATED"       
clus
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                2                26 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-55-7283 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7725        TCGA-55-7910        TCGA-55-7914 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-1677        TCGA-64-1681        TCGA-69-7974        TCGA-71-6725 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4676 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-75-5122        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7714        TCGA-86-7954        TCGA-91-6849 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-93-7348        TCGA-99-7458 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  5Q LOSS MUTATED                            3
  5Q LOSS WILD-TYPE                          8
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  5Q LOSS MUTATED                                  14
  5Q LOSS WILD-TYPE                                64
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5Q LOSS MUTATED                                                   23
  5Q LOSS WILD-TYPE                                                205
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  5Q LOSS MUTATED                                            0
  5Q LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  5Q LOSS MUTATED                                               2
  5Q LOSS WILD-TYPE                                            14
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  5Q LOSS MUTATED                                0
  5Q LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  5Q LOSS MUTATED                                    2
  5Q LOSS WILD-TYPE                                  1
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  5Q LOSS MUTATED                              1                             3
  5Q LOSS WILD-TYPE                            1                            13
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  5Q LOSS MUTATED                                               0
  5Q LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  5Q LOSS MUTATED                                   0
  5Q LOSS WILD-TYPE                                 7
D50V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  5Q LOSS MUTATED    13  29   3   3
  5Q LOSS WILD-TYPE 100 179  27  14
D50V6, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  T1              13               100
  T2              29               179
  T3               3                27
  T4               3                14
                   vv
clus                 N0  N1 N2+N3
  5Q LOSS MUTATED    32  13     3
  5Q LOSS WILD-TYPE 200  58    55
D50V7, multiclass
       clus
vv      5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  N0                 32               200
  N1                 13                58
  N2+N3               3                55
                   vv
clus                 M0  M1 M1B  MX
  5Q LOSS MUTATED    33   3   1   8
  5Q LOSS WILD-TYPE 214  14   2  87
D50V8, multiclass
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  M0               33               214
  M1                3                14
  M1B               1                 2
  MX                8                87
                   vv
clus                  I  II III  IV
  5Q LOSS MUTATED    25  13   5   4
  5Q LOSS WILD-TYPE 173  68  60  16
D50V9, multiclass
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  I                25               173
  II               13                68
  III               5                60
  IV                4                16
D50V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED      1   47
  5Q LOSS WILD-TYPE   19  303
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO                1                19
  YES              47               303
D50V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  5Q LOSS MUTATED                                            16
  5Q LOSS WILD-TYPE                                         109
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  5Q LOSS MUTATED                                        9             19
  5Q LOSS WILD-TYPE                                     85             65
                   vv
clus                LIFELONG NON-SMOKER
  5Q LOSS MUTATED                     4
  5Q LOSS WILD-TYPE                  50
D50V12, multiclass
                                             clus
vv                                            5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              16               109
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    9                85
  CURRENT SMOKER                                           19                65
  LIFELONG NON-SMOKER                                       4                50
D50V13, continuous
                   vv
clus                 R0  R1  R2  RX
  5Q LOSS MUTATED    28   2   0   3
  5Q LOSS WILD-TYPE 190   7   4  10
D50V14, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  R0              28               190
  R1               2                 7
  R2               0                 4
  RX               3                10

Clustering(51) Variable = 6p loss mutation analysis
D51V1, survival
                   sevent
clus2                 0   1
  6P LOSS MUTATED    20   9
  6P LOSS WILD-TYPE 226  76
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               29               302 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                9                76 
$`6P LOSS MUTATED`
TCGA-05-4390 TCGA-35-4123 TCGA-49-4505 TCGA-50-5051 TCGA-50-5932 TCGA-55-6968 
       37.02         5.95        14.07        14.96        35.87        42.48 
TCGA-55-6972 TCGA-55-7576 TCGA-55-8616 TCGA-62-A472 TCGA-64-1676 TCGA-67-3771 
       48.49         1.32         1.58        17.75        56.81         1.97 
TCGA-69-7760 TCGA-69-7974 TCGA-69-8253 TCGA-73-4675 TCGA-78-7146 TCGA-78-7152 
        5.06         6.05         3.25         1.32         5.65        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 TCGA-78-7535 TCGA-78-7536 TCGA-86-7953 
       24.99        19.50        32.09        31.20         8.02         1.12 
TCGA-86-8054 TCGA-95-7043 TCGA-95-7948 TCGA-97-7547 TCGA-97-8174 
        0.62         0.07         4.34        47.18         5.36 

$`6P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
        5.19        26.30         4.37        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        17.46        17.59        13.74         8.52         3.22 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       48.82        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        8.78        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       35.11        31.89        13.74        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 
       45.17         2.86         0.07        32.61         0.79        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       15.25         0.92         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 
       38.47         0.59         1.12         0.13         3.12         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.02         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        6.48         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.85         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8619 
        0.30         0.10         4.80         6.97         0.49         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 
        2.14         3.45         1.08         1.02         0.95         1.58 
TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O 
        0.03         0.92         0.16         5.29        68.81        47.77 
TCGA-62-A46P TCGA-62-A470 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
       19.53        39.22        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         0.99         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        0.69        13.87         6.12        22.68        13.61         4.24 
TCGA-69-7973 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8254 TCGA-69-8255 
        7.56         2.30         2.93        12.56         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        0.46         4.01         1.25        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7155 
       27.16        19.27        20.58        35.93        21.86        38.50 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
        8.48        88.11        26.53        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        32.68        13.81         0.36         0.89         0.23 
TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        0.33         0.79         1.41         0.85         0.76         0.69 
TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 
        0.53         1.12         1.45         0.56         1.28         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         0.03         1.28         1.15         0.36        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        4.18         0.92         1.02         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7552 
        1.12         5.36         0.69         1.32        31.66        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 
       43.76         8.65         5.95         0.59         0.72         5.95 
TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        4.80         0.49         8.22        14.04        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
        5.56         5.03         3.72         9.44         9.27         7.82 
TCGA-L4-A4E5 TCGA-L4-A4E6 
        6.97         2.50 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             0.07              0.03 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            56.81            223.96 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             8.02              8.50 
[1] "0.1 - 56.8 (8.0)"  "0.0 - 224.0 (8.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED     13   18
  6P LOSS WILD-TYPE  190  149
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  FEMALE              13               190
  MALE                18               149
D51V4, continuous
[1] "Remove cluster labels:" "6P LOSS MUTATED"       
clus
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                2                26 
       TCGA-35-4122        TCGA-35-5375        TCGA-55-7283        TCGA-55-7573 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7910        TCGA-55-7914        TCGA-64-1677 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-71-6725        TCGA-73-4659 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-73-4662        TCGA-73-4666        TCGA-73-4668        TCGA-73-4676 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-75-5122        TCGA-83-5908        TCGA-86-7701        TCGA-86-7711 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7714        TCGA-86-7954        TCGA-91-6849 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-93-7348        TCGA-99-7458 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  6P LOSS MUTATED                            2
  6P LOSS WILD-TYPE                          9
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  6P LOSS MUTATED                                  10
  6P LOSS WILD-TYPE                                68
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6P LOSS MUTATED                                                   15
  6P LOSS WILD-TYPE                                                213
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  6P LOSS MUTATED                                            0
  6P LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  6P LOSS MUTATED                                               1
  6P LOSS WILD-TYPE                                            15
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  6P LOSS MUTATED                                0
  6P LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  6P LOSS MUTATED                                    0
  6P LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  6P LOSS MUTATED                              0                             3
  6P LOSS WILD-TYPE                            2                            13
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  6P LOSS MUTATED                                               0
  6P LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  6P LOSS MUTATED                                   0
  6P LOSS WILD-TYPE                                 7
D51V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  6P LOSS MUTATED     7  17   4   3
  6P LOSS WILD-TYPE 106 191  26  14
D51V6, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  T1               7               106
  T2              17               191
  T3               4                26
  T4               3                14
                   vv
clus                 N0  N1 N2+N3
  6P LOSS MUTATED    18   6     7
  6P LOSS WILD-TYPE 214  65    51
D51V7, multiclass
       clus
vv      6P LOSS MUTATED 6P LOSS WILD-TYPE
  N0                 18               214
  N1                  6                65
  N2+N3               7                51
                   vv
clus                 M0  M1 M1B  MX
  6P LOSS MUTATED    25   2   0   4
  6P LOSS WILD-TYPE 222  15   3  91
D51V8, multiclass
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  M0               25               222
  M1                2                15
  M1B               0                 3
  MX                4                91
                   vv
clus                  I  II III  IV
  6P LOSS MUTATED    14   7   9   1
  6P LOSS WILD-TYPE 184  74  56  19
D51V9, multiclass
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  I                14               184
  II                7                74
  III               9                56
  IV                1                19
D51V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      3   28
  6P LOSS WILD-TYPE   17  322
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO                3                17
  YES              28               322
D51V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  6P LOSS MUTATED                                            15
  6P LOSS WILD-TYPE                                         110
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  6P LOSS MUTATED                                        5              7
  6P LOSS WILD-TYPE                                     89             77
                   vv
clus                LIFELONG NON-SMOKER
  6P LOSS MUTATED                     3
  6P LOSS WILD-TYPE                  51
D51V12, multiclass
                                             clus
vv                                            6P LOSS MUTATED 6P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              15               110
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    5                89
  CURRENT SMOKER                                            7                77
  LIFELONG NON-SMOKER                                       3                51
D51V13, continuous
                   vv
clus                 R0  R1  R2  RX
  6P LOSS MUTATED    19   0   0   2
  6P LOSS WILD-TYPE 199   9   4  11
D51V14, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  R0              19               199
  R1               0                 9
  R2               0                 4
  RX               2                11

Clustering(52) Variable = 6q loss mutation analysis
D52V1, survival
                   sevent
clus2                 0   1
  6Q LOSS MUTATED    53  18
  6Q LOSS WILD-TYPE 193  67
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               71               260 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               18                67 
$`6Q LOSS MUTATED`
TCGA-05-4390 TCGA-05-5429 TCGA-35-4123 TCGA-44-2659 TCGA-44-2666 TCGA-44-5644 
       37.02         0.99         5.95        17.39         3.19        16.37 
TCGA-44-6779 TCGA-44-7659 TCGA-44-8117 TCGA-49-4488 TCGA-49-4494 TCGA-49-4505 
       16.41         9.80         8.52        28.57        35.54        14.07 
TCGA-49-4514 TCGA-50-5051 TCGA-50-5932 TCGA-50-5935 TCGA-50-5942 TCGA-50-6594 
       43.20        14.96        35.87        21.47         4.44        12.16 
TCGA-55-6543 TCGA-55-6968 TCGA-55-6972 TCGA-55-7283 TCGA-55-7576 TCGA-55-7725 
        0.07        42.48        48.49         1.12         1.32         1.28 
TCGA-55-7903 TCGA-55-7911 TCGA-55-7914 TCGA-55-8094 TCGA-55-8512 TCGA-55-8615 
        0.62         0.69         0.10         0.13         0.10         0.49 
TCGA-55-8616 TCGA-55-A48Y TCGA-55-A494 TCGA-62-A472 TCGA-64-1676 TCGA-64-1678 
        1.58         1.02         0.16        17.75        56.81        39.09 
TCGA-64-5774 TCGA-64-5779 TCGA-67-3771 TCGA-67-6216 TCGA-69-7760 TCGA-69-7973 
       83.84        16.67         1.97         0.69         5.06         7.56 
TCGA-69-7974 TCGA-69-7979 TCGA-69-8253 TCGA-73-4666 TCGA-73-4675 TCGA-78-7146 
        6.05         2.93         3.25        20.28         1.32         5.65 
TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 
       35.93        39.48        24.99        19.50        32.09         5.88 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7633 TCGA-86-7713 
       31.20         8.02        53.33        28.96        32.68         0.23 
TCGA-86-7953 TCGA-86-8054 TCGA-91-6831 TCGA-95-7043 TCGA-95-7948 TCGA-97-7547 
        1.12         0.62         1.28         0.07         4.34        47.18 
TCGA-97-7554 TCGA-97-7938 TCGA-97-8174 TCGA-J2-8194 TCGA-L4-A4E5 
        8.65         0.59         5.36         3.72         6.97 

$`6Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       38.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5715 
       24.00        15.02         1.02         4.96         2.96         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       26.30         4.37        18.87        19.10        13.15         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78        13.15         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60         3.48         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       32.45        36.49         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8119 TCGA-49-4486 
       18.87        17.46        17.59        13.74         3.22        76.21 
TCGA-49-4487 TCGA-49-4490 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       28.11        12.66        46.72        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       29.75        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        48.82        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 
        8.05         9.27         8.78        77.88         8.45        15.12 
TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        9.37        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       11.05         6.21        33.37         0.72         8.38        35.11 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
        2.86        32.61         0.79        40.70        15.25         0.92 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        0.13         3.12         1.02         1.02         0.79         1.78 
TCGA-55-7907 TCGA-55-7910 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.53         6.48         0.69         3.02         0.20         0.85 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8513 
        0.49         7.07         1.41         7.46         0.30         4.80 
TCGA-55-8514 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Z 
        6.97         1.61         2.14         3.45         1.08         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O 
        1.58         0.03         0.92         5.29        68.81        47.77 
TCGA-62-A46P TCGA-62-A470 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
       19.53        39.22        20.65        55.40        37.02        44.38 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
        0.10        30.44        39.52         7.33         0.99         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 
        2.04         0.59         0.89        13.87         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7978 TCGA-69-7980 TCGA-69-8254 TCGA-69-8255 
       13.61         4.24         2.30        12.56         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        23.38        29.95        15.35         0.46 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
        4.01         1.25        20.42        17.06       163.10        27.16 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 TCGA-78-7155 TCGA-78-7159 TCGA-78-7160 
       19.27        20.58        21.86        38.50        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
        7.04       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7539 TCGA-78-7542 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-8055 
       10.75        10.55        13.81         0.36         0.89         0.33 
TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 
        0.79         1.41         0.85         0.76         0.69         0.53 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        1.12         1.45         0.56         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        0.03         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 
        1.02         9.76         4.18         6.08         1.12         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 
        0.69         1.32        31.66        48.53        43.76         5.95 
TCGA-97-7941 TCGA-97-8172 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 
        0.72         5.95         4.80         0.49         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-A4AD TCGA-J2-A4AE 
       15.06         1.45         5.56         5.03         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E6 
        7.82         2.50 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             0.07              0.03 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            83.84            223.96 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            6.970             8.795 
[1] "0.1 - 83.8 (7.0)"  "0.0 - 224.0 (8.8)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     43   40
  6Q LOSS WILD-TYPE  160  127
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  FEMALE              43               160
  MALE                40               127
D52V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  6Q LOSS MUTATED                            4
  6Q LOSS WILD-TYPE                          7
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  6Q LOSS MUTATED                                  19
  6Q LOSS WILD-TYPE                                59
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6Q LOSS MUTATED                                                   48
  6Q LOSS WILD-TYPE                                                180
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  6Q LOSS MUTATED                                            2
  6Q LOSS WILD-TYPE                                          2
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  6Q LOSS MUTATED                                               4
  6Q LOSS WILD-TYPE                                            12
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  6Q LOSS MUTATED                                0
  6Q LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  6Q LOSS MUTATED                                    0
  6Q LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  6Q LOSS MUTATED                              0                             6
  6Q LOSS WILD-TYPE                            2                            10
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  6Q LOSS MUTATED                                               0
  6Q LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  6Q LOSS MUTATED                                   0
  6Q LOSS WILD-TYPE                                 7
D52V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  6Q LOSS MUTATED    25  42  11   5
  6Q LOSS WILD-TYPE  88 166  19  12
D52V6, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  T1              25                88
  T2              42               166
  T3              11                19
  T4               5                12
                   vv
clus                 N0  N1 N2+N3
  6Q LOSS MUTATED    52  13    17
  6Q LOSS WILD-TYPE 180  58    41
D52V7, multiclass
       clus
vv      6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  N0                 52               180
  N1                 13                58
  N2+N3              17                41
                   vv
clus                 M0  M1 M1B  MX
  6Q LOSS MUTATED    57   4   2  17
  6Q LOSS WILD-TYPE 190  13   1  78
D52V8, multiclass
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  M0               57               190
  M1                4                13
  M1B               2                 1
  MX               17                78
                   vv
clus                  I  II III  IV
  6Q LOSS MUTATED    40  16  19   5
  6Q LOSS WILD-TYPE 158  65  46  15
D52V9, multiclass
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  I                40               158
  II               16                65
  III              19                46
  IV                5                15
D52V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      6   77
  6Q LOSS WILD-TYPE   14  273
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO                6                14
  YES              77               273
D52V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  6Q LOSS MUTATED                                            31
  6Q LOSS WILD-TYPE                                          94
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  6Q LOSS MUTATED                                       22             21
  6Q LOSS WILD-TYPE                                     72             63
                   vv
clus                LIFELONG NON-SMOKER
  6Q LOSS MUTATED                     7
  6Q LOSS WILD-TYPE                  47
D52V12, multiclass
                                             clus
vv                                            6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              31                94
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   22                72
  CURRENT SMOKER                                           21                63
  LIFELONG NON-SMOKER                                       7                47
D52V13, continuous
                   vv
clus                 R0  R1  R2  RX
  6Q LOSS MUTATED    51   2   0   3
  6Q LOSS WILD-TYPE 167   7   4  10
D52V14, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  R0              51               167
  R1               2                 7
  R2               0                 4
  RX               3                10

Clustering(53) Variable = 7p loss mutation analysis
D53V1, survival
                   sevent
clus2                 0   1
  7P LOSS MUTATED     6   3
  7P LOSS WILD-TYPE 240  82
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                9               322 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                3                82 
$`7P LOSS MUTATED`
TCGA-38-4630 TCGA-44-5643 TCGA-50-5931 TCGA-55-1594 TCGA-67-3770 TCGA-67-3774 
       35.28         3.48         8.78        38.73         0.99         0.59 
TCGA-69-7763 TCGA-78-7167 TCGA-86-8278 
       22.68        88.11         0.76 

$`7P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 
       47.61        85.32        37.71        49.02        28.37        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        17.46        17.59        13.74         8.52         3.22 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
        0.72         8.38        35.11        31.89        13.74        23.05 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.13         3.12         1.32         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 
        0.10         0.69         3.02         0.20         0.85         0.13 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
        0.92         0.16         5.29        68.81        47.77        19.53 
TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       39.22        17.75        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 
       39.52         7.33         1.97         0.59         2.04         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 
        0.69        13.87         5.06         6.12        13.61         4.24 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 
        7.56         6.05         2.30         2.93        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
       20.42        17.06       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      104.15       223.96         8.48        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 
        0.36         0.89         0.23         1.12         0.62         0.33 
TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 
        0.79         1.41         0.85         0.69         0.53         1.12 
TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        1.45         0.56         1.28         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.28         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        1.02         9.76         4.18         6.08         1.12         0.07 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 
        5.36         0.69         1.32         4.34        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 
        5.95         5.36         4.80         0.49         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        9.27         7.82         6.97         2.50 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
             0.59              0.03 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            88.11            223.96 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            8.780             8.465 
[1] "0.6 - 88.1 (8.8)"  "0.0 - 224.0 (8.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      6    5
  7P LOSS WILD-TYPE  197  162
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  FEMALE               6               197
  MALE                 5               162
D53V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  7P LOSS MUTATED                            0
  7P LOSS WILD-TYPE                         11
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  7P LOSS MUTATED                                   1
  7P LOSS WILD-TYPE                                77
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7P LOSS MUTATED                                                    7
  7P LOSS WILD-TYPE                                                221
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  7P LOSS MUTATED                                            0
  7P LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  7P LOSS MUTATED                                               0
  7P LOSS WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  7P LOSS MUTATED                                0
  7P LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  7P LOSS MUTATED                                    0
  7P LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  7P LOSS MUTATED                              0                             2
  7P LOSS WILD-TYPE                            2                            14
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  7P LOSS MUTATED                                               0
  7P LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  7P LOSS MUTATED                                   1
  7P LOSS WILD-TYPE                                 6
D53V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  7P LOSS MUTATED     3   8   0   0
  7P LOSS WILD-TYPE 110 200  30  17
D53V6, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  T1               3               110
  T2               8               200
  T3               0                30
  T4               0                17
                   vv
clus                 N0  N1 N2+N3
  7P LOSS MUTATED     8   1     2
  7P LOSS WILD-TYPE 224  70    56
D53V7, multiclass
       clus
vv      7P LOSS MUTATED 7P LOSS WILD-TYPE
  N0                  8               224
  N1                  1                70
  N2+N3               2                56
                   vv
clus                 M0  M1 M1B  MX
  7P LOSS MUTATED     8   1   0   1
  7P LOSS WILD-TYPE 239  16   3  94
D53V8, multiclass
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  M0                8               239
  M1                1                16
  M1B               0                 3
  MX                1                94
                   vv
clus                  I  II III  IV
  7P LOSS MUTATED     7   1   2   1
  7P LOSS WILD-TYPE 191  80  63  19
D53V9, multiclass
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  I                 7               191
  II                1                80
  III               2                63
  IV                1                19
D53V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      1   10
  7P LOSS WILD-TYPE   19  340
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO                1                19
  YES              10               340
D53V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  7P LOSS MUTATED                                             1
  7P LOSS WILD-TYPE                                         124
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  7P LOSS MUTATED                                        4              3
  7P LOSS WILD-TYPE                                     90             81
                   vv
clus                LIFELONG NON-SMOKER
  7P LOSS MUTATED                     2
  7P LOSS WILD-TYPE                  52
D53V12, multiclass
                                             clus
vv                                            7P LOSS MUTATED 7P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               1               124
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    4                90
  CURRENT SMOKER                                            3                81
  LIFELONG NON-SMOKER                                       2                52
D53V13, continuous
                   vv
clus                 R0  R1  R2  RX
  7P LOSS MUTATED     5   1   0   0
  7P LOSS WILD-TYPE 213   8   4  13
D53V14, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  R0               5               213
  R1               1                 8
  R2               0                 4
  RX               0                13

Clustering(54) Variable = 7q loss mutation analysis
D54V1, survival
                   sevent
clus2                 0   1
  7Q LOSS MUTATED     7   3
  7Q LOSS WILD-TYPE 239  82
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               10               321 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                3                82 
$`7Q LOSS MUTATED`
TCGA-38-4630 TCGA-44-5643 TCGA-49-6742 TCGA-50-5931 TCGA-50-6673 TCGA-55-1594 
       35.28         3.48        15.02         8.78         0.72        38.73 
TCGA-55-1595 TCGA-67-3770 TCGA-67-3774 TCGA-86-8278 
       48.62         0.99         0.59         0.76 

$`7Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 
       47.61        85.32        37.71        49.02        28.37        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        17.46        17.59        13.74         8.52         3.22 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-7109 
       25.51        11.05        12.16         6.21        33.37         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1596 TCGA-55-5899 
       35.11        31.89        13.74        23.05        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.28         1.02         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.53         6.48         0.69         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 
        0.20         0.85         0.13         0.49         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 
        7.46         0.30         0.10         4.80         6.97         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        0.95         1.58         0.03         0.92         0.16         5.29 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 
       68.81        47.77        19.53        39.22        17.75        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 
        0.10        30.44        16.67        39.52         7.33         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        0.59         2.04         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 
        6.12        22.68        13.61         4.24         7.56         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        2.30         2.93        12.56         3.25         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
        0.46         1.32         4.01         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
      163.10        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 
        0.89         0.23         1.12         0.62         0.33         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 
        1.41         0.85         0.69         0.53         1.12         1.45 
TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.56         1.28         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.15         0.36        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        9.76         4.18         6.08         1.12         0.07         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.69         1.32         4.34        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 
       43.76         8.65         5.95         0.59         0.72         5.95 
TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        5.36         4.80         0.49         8.22        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        1.45         5.56         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        7.82         6.97         2.50 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             0.59              0.03 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            48.62            223.96 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             6.13              8.48 
[1] "0.6 - 48.6 (6.1)"  "0.0 - 224.0 (8.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      8    4
  7Q LOSS WILD-TYPE  195  163
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  FEMALE               8               195
  MALE                 4               163
D54V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  7Q LOSS MUTATED                            0
  7Q LOSS WILD-TYPE                         11
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  7Q LOSS MUTATED                                   0
  7Q LOSS WILD-TYPE                                78
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7Q LOSS MUTATED                                                    8
  7Q LOSS WILD-TYPE                                                220
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  7Q LOSS MUTATED                                            0
  7Q LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  7Q LOSS MUTATED                                               0
  7Q LOSS WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  7Q LOSS MUTATED                                1
  7Q LOSS WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  7Q LOSS MUTATED                                    0
  7Q LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  7Q LOSS MUTATED                              0                             1
  7Q LOSS WILD-TYPE                            2                            15
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  7Q LOSS MUTATED                                               0
  7Q LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  7Q LOSS MUTATED                                   2
  7Q LOSS WILD-TYPE                                 5
D54V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  7Q LOSS MUTATED     4   8   0   0
  7Q LOSS WILD-TYPE 109 200  30  17
D54V6, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  T1               4               109
  T2               8               200
  T3               0                30
  T4               0                17
                   vv
clus                 N0  N1 N2+N3
  7Q LOSS MUTATED     8   2     2
  7Q LOSS WILD-TYPE 224  69    56
D54V7, multiclass
       clus
vv      7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  N0                  8               224
  N1                  2                69
  N2+N3               2                56
                   vv
clus                 M0  M1 M1B  MX
  7Q LOSS MUTATED     9   0   0   2
  7Q LOSS WILD-TYPE 238  17   3  93
D54V8, multiclass
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  M0                9               238
  M1                0                17
  M1B               0                 3
  MX                2                93
                   vv
clus                  I  II III  IV
  7Q LOSS MUTATED     8   2   2   0
  7Q LOSS WILD-TYPE 190  79  63  20
D54V9, multiclass
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  I                 8               190
  II                2                79
  III               2                63
  IV                0                20
D54V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      1   11
  7Q LOSS WILD-TYPE   19  339
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO                1                19
  YES              11               339
D54V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  7Q LOSS MUTATED                                             1
  7Q LOSS WILD-TYPE                                         124
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  7Q LOSS MUTATED                                        5              2
  7Q LOSS WILD-TYPE                                     89             82
                   vv
clus                LIFELONG NON-SMOKER
  7Q LOSS MUTATED                     3
  7Q LOSS WILD-TYPE                  51
D54V12, multiclass
                                             clus
vv                                            7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               1               124
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    5                89
  CURRENT SMOKER                                            2                82
  LIFELONG NON-SMOKER                                       3                51
D54V13, continuous
[1] "Remove cluster labels:" "7Q LOSS MUTATED"       
clus
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                2               187 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4433        TCGA-05-5420        TCGA-05-5423 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-35-4122        TCGA-35-4123 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4625        TCGA-38-4626        TCGA-38-7271 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2662        TCGA-44-2666        TCGA-44-2668 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-4112 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7672 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-8117        TCGA-44-8119        TCGA-49-4486        TCGA-49-4494 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1596        TCGA-55-5899        TCGA-55-6642 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6712        TCGA-55-6971        TCGA-55-7283        TCGA-55-7570 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7574        TCGA-55-7576        TCGA-55-7725        TCGA-55-7726 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-8089        TCGA-55-8092        TCGA-55-8094 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8511 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8512        TCGA-55-8514        TCGA-55-8615        TCGA-55-8620 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A491        TCGA-55-A492        TCGA-55-A493 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-A494        TCGA-64-1677        TCGA-64-1678        TCGA-64-1680 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5774        TCGA-64-5775        TCGA-64-5778 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5779        TCGA-64-5781        TCGA-69-7761        TCGA-69-7763 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7974        TCGA-69-7979 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8255        TCGA-73-4659        TCGA-73-4662 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4666        TCGA-73-4668        TCGA-73-4670        TCGA-73-4675 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-73-7498        TCGA-75-6214        TCGA-75-7025 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-75-7027        TCGA-75-7031        TCGA-78-7145        TCGA-78-7146 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7147        TCGA-78-7148        TCGA-78-7149        TCGA-78-7150 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7152        TCGA-78-7153        TCGA-78-7154        TCGA-78-7155 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7156        TCGA-78-7158        TCGA-78-7159        TCGA-78-7160 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7161        TCGA-78-7162        TCGA-78-7163        TCGA-78-7166 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7167        TCGA-78-7220        TCGA-78-7535        TCGA-78-7536 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7537        TCGA-78-7539        TCGA-78-7542        TCGA-78-7633 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-80-5607        TCGA-80-5608        TCGA-83-5908        TCGA-86-6851 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7714        TCGA-86-7954        TCGA-86-8054 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8074        TCGA-86-8281        TCGA-86-8673 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-91-6829        TCGA-91-6830        TCGA-91-6836 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-93-7347        TCGA-93-7348        TCGA-93-8067        TCGA-95-7567 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-8172 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8179        TCGA-99-7458        TCGA-99-8025 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-99-8028        TCGA-99-8032        TCGA-J2-8194        TCGA-J2-A4AD 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
                   vv
clus                 R0  R1  R2  RX
  7Q LOSS MUTATED     4   1   0   0
  7Q LOSS WILD-TYPE 214   8   4  13
D54V14, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  R0               4               214
  R1               1                 8
  R2               0                 4
  RX               0                13

Clustering(55) Variable = 8p loss mutation analysis
D55V1, survival
                   sevent
clus2                 0   1
  8P LOSS MUTATED    64  19
  8P LOSS WILD-TYPE 182  66
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               83               248 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               19                66 
$`8P LOSS MUTATED`
TCGA-05-4420 TCGA-05-4427 TCGA-05-4433 TCGA-35-4123 TCGA-38-4631 TCGA-44-2662 
       29.95        26.01        24.00         5.95        11.64        15.78 
TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6774 
        6.44         6.21         3.48        16.37         0.30         5.42 
TCGA-44-7660 TCGA-44-7670 TCGA-44-8117 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 
        5.33        17.46         8.52        28.57        12.66        46.72 
TCGA-49-4505 TCGA-49-4510 TCGA-49-6761 TCGA-50-5049 TCGA-50-5931 TCGA-50-5932 
       14.07        29.46         0.03        48.82         8.78        35.87 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 
       11.05        12.16        33.37         0.72        35.11        31.89 
TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6980 TCGA-55-7573 TCGA-55-7576 
       38.73        48.62         2.86         2.20         0.13         1.32 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7903 TCGA-55-7914 TCGA-55-8097 TCGA-55-8616 
        1.02         1.02         0.62         0.10         0.49         1.58 
TCGA-55-A490 TCGA-62-A46O TCGA-64-1676 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 
        1.58        47.77        56.81        39.09        55.40        44.38 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-69-7760 
        0.10        30.44         7.33         0.99         0.59         5.06 
TCGA-69-7979 TCGA-73-4662 TCGA-73-4668 TCGA-73-7498 TCGA-73-7499 TCGA-78-7150 
        2.93        29.95        15.35        20.42        17.06        21.86 
TCGA-78-7152 TCGA-78-7155 TCGA-78-7536 TCGA-78-7542 TCGA-86-7713 TCGA-86-8054 
       39.48        38.50         8.02        10.55         0.23         0.62 
TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8279 TCGA-86-8668 TCGA-91-6836 
        0.33         0.79         1.41         0.69         1.45         0.36 
TCGA-91-6847 TCGA-95-7039 TCGA-95-7043 TCGA-95-7947 TCGA-97-7554 TCGA-97-7937 
       26.93         1.12         0.07         1.32         8.65         5.95 
TCGA-97-7938 TCGA-99-8032 TCGA-J2-8194 TCGA-J2-A4AE TCGA-L4-A4E5 
        0.59         1.45         3.72         9.27         6.97 

$`8P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4434 
        8.98        30.02        26.01        25.02        25.02        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F 
       28.37        35.28        44.61         5.19        26.30         4.37 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 
       18.87        19.10        13.15        17.39         3.39        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-4112 TCGA-44-5645 
        3.19         8.09        10.22         8.32         4.60         6.84 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
        3.35         9.93         7.76         3.12         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 
       32.45        36.49        16.41         9.80         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-44-8119 TCGA-49-4486 
       18.31        18.87        17.59        13.74         3.22        76.21 
TCGA-49-4487 TCGA-49-4494 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 
       28.11        35.54        32.84         8.81        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        12.99         4.93        20.48        71.47 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6595 
       12.26        11.47        42.31         3.88        25.51         6.21 
TCGA-50-7109 TCGA-53-7813 TCGA-55-1592 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
        8.38        13.74        23.05        45.17         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        3.88         5.46         7.76        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7574 TCGA-55-7725 TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-7910 
        3.12         1.28         0.79         1.78         0.53         6.48 
TCGA-55-7911 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 
        0.69         0.69         3.02         0.20         0.85         0.13 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        7.07         1.41         7.46         0.30         0.10         4.80 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        6.97         0.49         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        1.02         0.95         0.03         0.92         0.16         5.29 
TCGA-62-8399 TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1677 TCGA-64-1680 
       68.81        19.53        39.22        17.75        20.65        37.02 
TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 
       83.84        16.67        39.52         1.97         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.89         0.69        13.87         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 
        4.24         7.56         6.05         2.30        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
        2.50         4.21         2.01        52.57        23.38        20.28 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 
        0.46         1.32         4.01         1.25       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7153 TCGA-78-7154 
        5.65        19.27        20.58        35.93        24.99        19.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7537 
      223.96         8.48        88.11        26.53        31.20        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       10.75        28.96        32.68        13.81         0.36         0.89 
TCGA-86-7953 TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 TCGA-86-8585 TCGA-86-8671 
        1.12         0.85         0.76         0.53         1.12         0.56 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        4.18         0.92         1.02         9.76         4.18         6.08 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        5.36         0.69         4.34        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 
       43.76         0.72         5.95         5.36         4.80         0.49 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-A4AD 
        8.22        14.04        15.06         5.56         5.03         9.44 
TCGA-J2-A4AG TCGA-L4-A4E6 
        7.82         2.50 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             0.03              0.03 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            56.81            223.96 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            7.330             8.745 
[1] "0.0 - 56.8 (7.3)"  "0.0 - 224.0 (8.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     56   41
  8P LOSS WILD-TYPE  147  126
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  FEMALE              56               147
  MALE                41               126
D55V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  8P LOSS MUTATED                            3
  8P LOSS WILD-TYPE                          8
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  8P LOSS MUTATED                                  16
  8P LOSS WILD-TYPE                                62
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8P LOSS MUTATED                                                   65
  8P LOSS WILD-TYPE                                                163
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  8P LOSS MUTATED                                            1
  8P LOSS WILD-TYPE                                          3
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  8P LOSS MUTATED                                               5
  8P LOSS WILD-TYPE                                            11
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  8P LOSS MUTATED                                1
  8P LOSS WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  8P LOSS MUTATED                                    3
  8P LOSS WILD-TYPE                                  0
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  8P LOSS MUTATED                              0                             2
  8P LOSS WILD-TYPE                            2                            14
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  8P LOSS MUTATED                                               1
  8P LOSS WILD-TYPE                                             2
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  8P LOSS MUTATED                                   0
  8P LOSS WILD-TYPE                                 7
D55V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  8P LOSS MUTATED    37  53   5   2
  8P LOSS WILD-TYPE  76 155  25  15
D55V6, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  T1              37                76
  T2              53               155
  T3               5                25
  T4               2                15
                   vv
clus                 N0  N1 N2+N3
  8P LOSS MUTATED    66  17    14
  8P LOSS WILD-TYPE 166  54    44
D55V7, multiclass
       clus
vv      8P LOSS MUTATED 8P LOSS WILD-TYPE
  N0                 66               166
  N1                 17                54
  N2+N3              14                44
                   vv
clus                 M0  M1 M1B  MX
  8P LOSS MUTATED    70   3   0  23
  8P LOSS WILD-TYPE 177  14   3  72
D55V8, multiclass
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  M0               70               177
  M1                3                14
  M1B               0                 3
  MX               23                72
                   vv
clus                  I  II III  IV
  8P LOSS MUTATED    57  21  16   3
  8P LOSS WILD-TYPE 141  60  49  17
D55V9, multiclass
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  I                57               141
  II               21                60
  III              16                49
  IV                3                17
D55V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED      5   92
  8P LOSS WILD-TYPE   15  258
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO                5                15
  YES              92               258
D55V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  8P LOSS MUTATED                                            24
  8P LOSS WILD-TYPE                                         101
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  8P LOSS MUTATED                                       25             30
  8P LOSS WILD-TYPE                                     69             54
                   vv
clus                LIFELONG NON-SMOKER
  8P LOSS MUTATED                    15
  8P LOSS WILD-TYPE                  39
D55V12, multiclass
                                             clus
vv                                            8P LOSS MUTATED 8P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              24               101
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   25                69
  CURRENT SMOKER                                           30                54
  LIFELONG NON-SMOKER                                      15                39
D55V13, continuous
                   vv
clus                 R0  R1  R2  RX
  8P LOSS MUTATED    63   1   0   3
  8P LOSS WILD-TYPE 155   8   4  10
D55V14, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  R0              63               155
  R1               1                 8
  R2               0                 4
  RX               3                10

Clustering(56) Variable = 8q loss mutation analysis
D56V1, survival
                   sevent
clus2                 0   1
  8Q LOSS MUTATED     8   0
  8Q LOSS WILD-TYPE 238  85
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                8               323 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                0                85 
$`8Q LOSS MUTATED`
TCGA-50-6597 TCGA-55-7573 TCGA-55-7727 TCGA-55-7903 TCGA-64-1679 TCGA-86-8055 
       33.37         0.13         1.02         0.62        55.40         0.33 
TCGA-86-8279 TCGA-95-7039 
        0.69         1.12 

$`8Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61         5.19        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        4.60         3.48        16.37         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       32.45        36.49        16.41         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        8.52         3.22        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
        9.76        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       12.26        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
       12.16         6.21         0.72         8.38        35.11        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       13.74        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
       38.47         0.59         1.12         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        1.02         0.79         1.78         0.53         6.48         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 
        0.10         0.69         3.02         0.20         0.85         0.13 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
        0.92         0.16         5.29        68.81        47.77        19.53 
TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       39.22        17.75        56.81        20.65        39.09        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        7.33         0.99         1.97         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.89         0.69        13.87         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       13.61         4.24         7.56         6.05         2.30         2.93 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
       12.56         3.25         2.50         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
        4.01         1.25        20.42        17.06       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
        5.65        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       26.53        31.20         8.02        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        32.68        13.81         0.36         0.89         0.23 
TCGA-86-7953 TCGA-86-8054 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        1.12         0.62         0.79         1.41         0.85         0.76 
TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 
        0.53         1.12         1.45         0.56         1.28         1.22 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         0.03         1.28         1.15         0.36        26.93 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        4.18         0.92         1.02         9.76         4.18         6.08 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 
        0.07         5.36         0.69         1.32         4.34        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 
        0.72         5.95         5.36         4.80         0.49         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        9.44         9.27         7.82         6.97         2.50 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             0.13              0.03 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            55.40            223.96 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            0.855             8.650 
[1] "0.1 - 55.4 (0.9)"  "0.0 - 224.0 (8.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
[1] "hr="     "9300000"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      5    6
  8Q LOSS WILD-TYPE  198  161
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  FEMALE               5               198
  MALE                 6               161
D56V4, continuous
[1] "Remove cluster labels:" "8Q LOSS MUTATED"       
clus
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                1                27 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-55-7283 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7910        TCGA-55-7914        TCGA-64-1677 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1681        TCGA-64-5778        TCGA-69-7974        TCGA-71-6725 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4676        TCGA-75-5122        TCGA-83-5908        TCGA-86-7701 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-7711        TCGA-86-7713        TCGA-86-7714        TCGA-86-7954 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-93-7348        TCGA-99-7458 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  8Q LOSS MUTATED                            0
  8Q LOSS WILD-TYPE                         11
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  8Q LOSS MUTATED                                   2
  8Q LOSS WILD-TYPE                                76
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8Q LOSS MUTATED                                                    7
  8Q LOSS WILD-TYPE                                                221
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  8Q LOSS MUTATED                                            0
  8Q LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  8Q LOSS MUTATED                                               0
  8Q LOSS WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  8Q LOSS MUTATED                                0
  8Q LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  8Q LOSS MUTATED                                    1
  8Q LOSS WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  8Q LOSS MUTATED                              0                             0
  8Q LOSS WILD-TYPE                            2                            16
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  8Q LOSS MUTATED                                               1
  8Q LOSS WILD-TYPE                                             2
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  8Q LOSS MUTATED                                   0
  8Q LOSS WILD-TYPE                                 7
D56V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  8Q LOSS MUTATED     4   6   1   0
  8Q LOSS WILD-TYPE 109 202  29  17
D56V6, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  T1               4               109
  T2               6               202
  T3               1                29
  T4               0                17
                   vv
clus                 N0  N1 N2+N3
  8Q LOSS MUTATED     6   3     2
  8Q LOSS WILD-TYPE 226  68    56
D56V7, multiclass
       clus
vv      8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  N0                  6               226
  N1                  3                68
  N2+N3               2                56
                   vv
clus                 M0  M1 M1B  MX
  8Q LOSS MUTATED     7   0   0   4
  8Q LOSS WILD-TYPE 240  17   3  91
D56V8, multiclass
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  M0                7               240
  M1                0                17
  M1B               0                 3
  MX                4                91
                   vv
clus                  I  II III  IV
  8Q LOSS MUTATED     5   3   3   0
  8Q LOSS WILD-TYPE 193  78  62  20
D56V9, multiclass
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  I                 5               193
  II                3                78
  III               3                62
  IV                0                20
D56V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      0   11
  8Q LOSS WILD-TYPE   20  339
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO                0                20
  YES              11               339
D56V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  8Q LOSS MUTATED                                             2
  8Q LOSS WILD-TYPE                                         123
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  8Q LOSS MUTATED                                        1              5
  8Q LOSS WILD-TYPE                                     93             79
                   vv
clus                LIFELONG NON-SMOKER
  8Q LOSS MUTATED                     3
  8Q LOSS WILD-TYPE                  51
D56V12, multiclass
                                             clus
vv                                            8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               2               123
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                93
  CURRENT SMOKER                                            5                79
  LIFELONG NON-SMOKER                                       3                51
D56V13, continuous
[1] "Remove cluster labels:" "8Q LOSS MUTATED"       
clus
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                1               188 
       TCGA-05-4384        TCGA-05-4390        TCGA-05-4396        TCGA-05-4405 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4410        TCGA-05-4415        TCGA-05-4417        TCGA-05-4424 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4433        TCGA-05-5420        TCGA-05-5423 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-5425        TCGA-05-5428        TCGA-35-4122        TCGA-35-4123 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-35-5375        TCGA-38-4625        TCGA-38-4626        TCGA-38-7271 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2662        TCGA-44-2666        TCGA-44-2668 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-3396        TCGA-44-3398        TCGA-44-3918        TCGA-44-4112 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6147        TCGA-44-6148        TCGA-44-6774        TCGA-44-6775 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6776        TCGA-44-6777        TCGA-44-6778        TCGA-44-6779 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7659        TCGA-44-7660        TCGA-44-7661        TCGA-44-7662 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7667        TCGA-44-7669        TCGA-44-7670        TCGA-44-7672 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-8117        TCGA-44-8119        TCGA-49-4486        TCGA-49-4494 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4505        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6642        TCGA-55-6712        TCGA-55-6971 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7283        TCGA-55-7570        TCGA-55-7574        TCGA-55-7576 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7725        TCGA-55-7726        TCGA-55-7728        TCGA-55-7907 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8089 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8097        TCGA-55-8299 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8301        TCGA-55-8511        TCGA-55-8512        TCGA-55-8514 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8620        TCGA-55-8621        TCGA-55-A48X 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-A48Y        TCGA-55-A48Z        TCGA-55-A490        TCGA-55-A491 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-A492        TCGA-55-A493        TCGA-55-A494        TCGA-64-1677 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7761        TCGA-69-7763        TCGA-69-7764        TCGA-69-7765 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7979        TCGA-69-8253        TCGA-69-8255 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4659        TCGA-73-4662        TCGA-73-4666        TCGA-73-4668 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4670        TCGA-73-4675        TCGA-73-4676        TCGA-73-7498 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-75-6214        TCGA-75-7025        TCGA-75-7027        TCGA-75-7031 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7542        TCGA-78-7633        TCGA-80-5607        TCGA-80-5608 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6851        TCGA-86-7711        TCGA-86-7714 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-7954        TCGA-86-8054        TCGA-86-8074        TCGA-86-8281 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8673        TCGA-86-8674        TCGA-91-6829        TCGA-91-6830 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6836        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-95-7567        TCGA-95-7944        TCGA-95-7947        TCGA-95-7948 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8179        TCGA-99-7458 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-J2-8194 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-J2-A4AD        TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
                   vv
clus                 R0  R1  R2  RX
  8Q LOSS MUTATED     8   0   0   0
  8Q LOSS WILD-TYPE 210   9   4  13
D56V14, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  R0               8               210
  R1               0                 9
  R2               0                 4
  RX               0                13

Clustering(57) Variable = 9p loss mutation analysis
D57V1, survival
                   sevent
clus2                 0   1
  9P LOSS MUTATED    71  31
  9P LOSS WILD-TYPE 175  54
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              102               229 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               31                54 
$`9P LOSS MUTATED`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4402 TCGA-05-4405 TCGA-05-4418 
        3.98        14.01         9.96         8.02        20.05         8.98 
TCGA-05-4433 TCGA-05-5423 TCGA-05-5425 TCGA-05-5715 TCGA-38-4628 TCGA-38-4630 
       24.00         4.96         2.96         2.04        49.02        35.28 
TCGA-38-4631 TCGA-38-6178 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6146 
       11.64         5.19         3.48        16.37         0.30         9.93 
TCGA-44-6779 TCGA-44-7660 TCGA-44-7662 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
       16.41         5.33         1.64        18.87        17.46        17.59 
TCGA-44-8117 TCGA-49-4490 TCGA-49-4505 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 
        8.52        12.66        14.07        29.46        43.20        15.02 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5936 TCGA-50-5944 TCGA-50-5946 
        9.27         8.78        35.87         8.45        12.26        11.47 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6673 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 
       25.51        12.16         0.72        31.89        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6975 TCGA-55-6985 TCGA-55-7281 TCGA-55-7576 
       45.17         2.86         3.88        40.54         0.59         1.32 
TCGA-55-7726 TCGA-55-7907 TCGA-55-7914 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 
        1.02         0.53         0.10         0.20         0.85         0.13 
TCGA-55-8512 TCGA-55-A490 TCGA-55-A492 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O 
        0.10         1.58         0.03         5.29        68.81        47.77 
TCGA-62-A472 TCGA-64-1678 TCGA-64-1680 TCGA-64-1681 TCGA-64-5815 TCGA-67-3770 
       17.75        39.09        37.02        44.38         7.33         0.99 
TCGA-67-3772 TCGA-67-3774 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 TCGA-69-8255 
        0.59         0.59         5.06         6.12        13.61         4.21 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
       29.95        15.35         0.46         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7156 TCGA-78-7161 TCGA-78-7166 TCGA-78-7167 
       35.93        21.86        32.09         7.04         8.48        88.11 
TCGA-78-7540 TCGA-78-7633 TCGA-86-7711 TCGA-86-7713 TCGA-86-8054 TCGA-86-8074 
       28.96        32.68         0.89         0.23         0.62         0.79 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8668 TCGA-91-6829 TCGA-91-6831 TCGA-91-6847 
        0.69         0.53         1.45        41.33         1.28        26.93 
TCGA-91-6849 TCGA-95-7567 TCGA-95-7948 TCGA-97-8179 TCGA-J2-8192 TCGA-J2-A4AD 
        0.92         5.36         4.34         0.49         5.03         9.44 

$`9P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4415 
       38.07        19.92        37.02        24.03        47.05         2.96 
TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       14.93        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 
       25.02        15.02         1.02         0.99         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 
        5.95         8.68        47.61        85.32        37.71        28.37 
TCGA-38-4632 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61        26.30         4.37        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 
       10.22         8.32         6.44         6.21         4.60         6.84 
TCGA-44-6145 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        3.35         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7661 TCGA-44-7667 TCGA-44-7672 
       32.45        36.49         9.80         5.03        18.31        13.74 
TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 
        3.22        76.21        28.11        28.57        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       32.84         8.81        29.75        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
        0.03        20.48        71.47        48.82        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 
        9.76        49.28         8.05        77.88        21.47        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6595 
        9.37         4.44        42.31         3.88        11.05         6.21 
TCGA-50-6597 TCGA-50-7109 TCGA-53-7624 TCGA-53-7813 TCGA-55-1595 TCGA-55-6543 
       33.37         8.38        35.11        13.74        48.62         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
       48.49         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 
       60.03        24.99        71.05        38.47         1.12         0.13 
TCGA-55-7574 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        3.12         1.28         1.02         0.79         1.78         0.62 
TCGA-55-7910 TCGA-55-7911 TCGA-55-8087 TCGA-55-8089 TCGA-55-8097 TCGA-55-8299 
        6.48         0.69         0.69         3.02         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 
        1.41         7.46         0.30         4.80         6.97         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A493 TCGA-55-A494 TCGA-62-A46P TCGA-62-A470 TCGA-64-1676 
        0.95         0.92         0.16        19.53        39.22        56.81 
TCGA-64-1677 TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       20.65        55.40        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-67-3771 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       39.52         1.97         2.04         0.89         0.69        13.87 
TCGA-69-7763 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       22.68         4.24         7.56         6.05         2.30         2.93 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
       12.56         3.25         2.50         2.01        52.57        23.38 
TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
       20.28         1.32         4.01         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
      163.10        27.16        39.48        24.99        19.50        38.50 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7220 
        5.88        40.11        22.29       104.15       223.96        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7542 TCGA-83-5908 
       31.20         8.02        53.33        10.75        10.55        13.81 
TCGA-86-7701 TCGA-86-7953 TCGA-86-8055 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.36         1.12         0.33         1.41         0.85         0.76 
TCGA-86-8585 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6830 TCGA-91-6835 
        1.12         0.56         1.28         1.22         0.03         1.15 
TCGA-91-6836 TCGA-91-6848 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        0.36         4.18         1.02         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7547 
        1.12         0.07         0.69         1.32        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        5.95         5.36         4.80         8.22        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8194 TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        1.45         5.56         3.72         9.27         7.82         6.97 
TCGA-L4-A4E6 
        2.50 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.03              0.03 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            88.11            223.96 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             8.65              8.32 
[1] "0.0 - 88.1 (8.6)"  "0.0 - 224.0 (8.3)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     52   61
  9P LOSS WILD-TYPE  151  106
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  FEMALE              52               151
  MALE                61               106
D57V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  9P LOSS MUTATED                            5
  9P LOSS WILD-TYPE                          6
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  9P LOSS MUTATED                                  26
  9P LOSS WILD-TYPE                                52
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9P LOSS MUTATED                                                   66
  9P LOSS WILD-TYPE                                                162
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  9P LOSS MUTATED                                            2
  9P LOSS WILD-TYPE                                          2
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  9P LOSS MUTATED                                               3
  9P LOSS WILD-TYPE                                            13
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  9P LOSS MUTATED                                0
  9P LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  9P LOSS MUTATED                                    1
  9P LOSS WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  9P LOSS MUTATED                              1                             5
  9P LOSS WILD-TYPE                            1                            11
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  9P LOSS MUTATED                                               2
  9P LOSS WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  9P LOSS MUTATED                                   2
  9P LOSS WILD-TYPE                                 5
D57V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  9P LOSS MUTATED    28  70  10   5
  9P LOSS WILD-TYPE  85 138  20  12
D57V6, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  T1              28                85
  T2              70               138
  T3              10                20
  T4               5                12
                   vv
clus                 N0  N1 N2+N3
  9P LOSS MUTATED    63  33    16
  9P LOSS WILD-TYPE 169  38    42
D57V7, multiclass
       clus
vv      9P LOSS MUTATED 9P LOSS WILD-TYPE
  N0                 63               169
  N1                 33                38
  N2+N3              16                42
                   vv
clus                 M0  M1 M1B  MX
  9P LOSS MUTATED    76   6   2  25
  9P LOSS WILD-TYPE 171  11   1  70
D57V8, multiclass
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  M0               76               171
  M1                6                11
  M1B               2                 1
  MX               25                70
                   vv
clus                  I  II III  IV
  9P LOSS MUTATED    50  36  18   8
  9P LOSS WILD-TYPE 148  45  47  12
D57V9, multiclass
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  I                50               148
  II               36                45
  III              18                47
  IV                8                12
D57V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED      6  107
  9P LOSS WILD-TYPE   14  243
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO                6                14
  YES             107               243
D57V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  9P LOSS MUTATED                                            29
  9P LOSS WILD-TYPE                                          96
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  9P LOSS MUTATED                                       31             33
  9P LOSS WILD-TYPE                                     63             51
                   vv
clus                LIFELONG NON-SMOKER
  9P LOSS MUTATED                    15
  9P LOSS WILD-TYPE                  39
D57V12, multiclass
                                             clus
vv                                            9P LOSS MUTATED 9P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              29                96
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   31                63
  CURRENT SMOKER                                           33                51
  LIFELONG NON-SMOKER                                      15                39
D57V13, continuous
                   vv
clus                 R0  R1  R2  RX
  9P LOSS MUTATED    65   3   2   5
  9P LOSS WILD-TYPE 153   6   2   8
D57V14, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  R0              65               153
  R1               3                 6
  R2               2                 2
  RX               5                 8

Clustering(58) Variable = 9q loss mutation analysis
D58V1, survival
                   sevent
clus2                 0   1
  9Q LOSS MUTATED    59  25
  9Q LOSS WILD-TYPE 187  60
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               84               247 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               25                60 
$`9Q LOSS MUTATED`
TCGA-05-4250 TCGA-05-4402 TCGA-05-4418 TCGA-05-4432 TCGA-05-4433 TCGA-05-5425 
        3.98         8.02         8.98        25.02        24.00         2.96 
TCGA-05-5715 TCGA-38-4625 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
        2.04        47.61        49.02        35.28        11.64         5.19 
TCGA-44-5644 TCGA-44-6144 TCGA-44-7660 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
       16.37         0.30         5.33        18.87        17.46        17.59 
TCGA-44-8117 TCGA-49-4490 TCGA-49-4505 TCGA-49-4510 TCGA-49-4514 TCGA-50-5932 
        8.52        12.66        14.07        29.46        43.20        35.87 
TCGA-50-5936 TCGA-50-5944 TCGA-50-5946 TCGA-50-6594 TCGA-50-6673 TCGA-55-1592 
        8.45        12.26        11.47        12.16         0.72        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6975 TCGA-55-6985 TCGA-55-7281 
       38.73        45.17         2.86         3.88        40.54         0.59 
TCGA-55-7726 TCGA-55-7907 TCGA-55-7914 TCGA-55-8094 TCGA-55-8512 TCGA-55-A492 
        1.02         0.53         0.10         0.13         0.10         0.03 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A470 TCGA-64-1680 
        0.16         5.29        68.81        47.77        39.22        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5779 TCGA-67-3770 TCGA-67-3772 TCGA-67-3774 
       44.38        83.84        16.67         0.99         0.59         0.59 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7973 TCGA-69-8255 TCGA-73-4662 TCGA-73-4668 
        5.06         6.12         7.56         4.21        29.95        15.35 
TCGA-73-4670 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
        0.46        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7159 TCGA-78-7161 TCGA-78-7167 TCGA-78-7633 TCGA-86-7711 TCGA-86-7713 
       40.11         7.04        88.11        32.68         0.89         0.23 
TCGA-86-8074 TCGA-86-8279 TCGA-86-8280 TCGA-86-8668 TCGA-91-6829 TCGA-91-6831 
        0.79         0.69         0.53         1.45        41.33         1.28 
TCGA-91-6847 TCGA-95-7039 TCGA-95-7567 TCGA-95-7948 TCGA-J2-8192 TCGA-J2-A4AD 
       26.93         1.12         5.36         4.34         5.03         9.44 

$`9Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 
       47.05        20.05         2.96        14.93        29.95        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        26.01        25.02        15.02         1.02         4.96 
TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 
        0.99         0.46         7.36         5.95         8.68        85.32 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4632 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       37.71        28.37        44.61        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         3.48         6.84         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7672 
       16.41         9.80         5.03         1.64        18.31        13.74 
TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 
        3.22        76.21        28.11        28.57        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       32.84         8.81        29.75        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-6590 
       77.88        21.47        15.12         9.37         4.44        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-7109 
        3.88        25.51        11.05         6.21        33.37         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 
       35.11        31.89        13.74        48.62         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       24.99        71.05        38.47         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.32         1.28         1.02         0.79         1.78         0.62 
TCGA-55-7910 TCGA-55-7911 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        6.48         0.69         0.69         3.02         0.20         0.85 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8513 
        0.49         7.07         1.41         7.46         0.30         4.80 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        6.97         0.49         1.58         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A493 TCGA-62-A46P 
        1.08         1.02         0.95         1.58         0.92        19.53 
TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-5775 
       17.75        56.81        20.65        39.09        55.40         0.10 
TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3773 TCGA-67-6215 
       30.44        39.52         7.33         1.97         2.04         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7974 
        0.69        13.87        22.68        13.61         4.24         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-71-6725 
        2.30         2.93        12.56         3.25         2.50         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       52.57        23.38        20.28         1.32         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       20.42        17.06       163.10        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7162 
       19.50        38.50        32.09         5.88        22.29       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
      223.96         8.48        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-83-5908 TCGA-86-7701 TCGA-86-7953 
       10.75        28.96        10.55        13.81         0.36         1.12 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8585 
        0.62         0.33         1.41         0.85         0.76         1.12 
TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 
        0.56         1.28         1.22         0.03         1.15         0.36 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        4.18         0.92         1.02         9.76         4.18         6.08 
TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.07         0.69         1.32        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 
       43.76         8.65         5.95         0.59         0.72         5.95 
TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        5.36         4.80         0.49         8.22        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8194 TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        1.45         5.56         3.72         9.27         7.82         6.97 
TCGA-L4-A4E6 
        2.50 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.03              0.03 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            88.11            223.96 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             8.75              8.38 
[1] "0.0 - 88.1 (8.8)"  "0.0 - 224.0 (8.4)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     51   45
  9Q LOSS WILD-TYPE  152  122
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  FEMALE              51               152
  MALE                45               122
D58V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  9Q LOSS MUTATED                            5
  9Q LOSS WILD-TYPE                          6
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  9Q LOSS MUTATED                                  21
  9Q LOSS WILD-TYPE                                57
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9Q LOSS MUTATED                                                   57
  9Q LOSS WILD-TYPE                                                171
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  9Q LOSS MUTATED                                            1
  9Q LOSS WILD-TYPE                                          3
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  9Q LOSS MUTATED                                               3
  9Q LOSS WILD-TYPE                                            13
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  9Q LOSS MUTATED                                0
  9Q LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  9Q LOSS MUTATED                                    1
  9Q LOSS WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  9Q LOSS MUTATED                              0                             5
  9Q LOSS WILD-TYPE                            2                            11
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  9Q LOSS MUTATED                                               2
  9Q LOSS WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  9Q LOSS MUTATED                                   1
  9Q LOSS WILD-TYPE                                 6
D58V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  9Q LOSS MUTATED    27  59   8   2
  9Q LOSS WILD-TYPE  86 149  22  15
D58V6, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  T1              27                86
  T2              59               149
  T3               8                22
  T4               2                15
                   vv
clus                 N0  N1 N2+N3
  9Q LOSS MUTATED    57  25    12
  9Q LOSS WILD-TYPE 175  46    46
D58V7, multiclass
       clus
vv      9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  N0                 57               175
  N1                 25                46
  N2+N3              12                46
                   vv
clus                 M0  M1 M1B  MX
  9Q LOSS MUTATED    62   6   2  22
  9Q LOSS WILD-TYPE 185  11   1  73
D58V8, multiclass
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  M0               62               185
  M1                6                11
  M1B               2                 1
  MX               22                73
                   vv
clus                  I  II III  IV
  9Q LOSS MUTATED    50  25  12   8
  9Q LOSS WILD-TYPE 148  56  53  12
D58V9, multiclass
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  I                50               148
  II               25                56
  III              12                53
  IV                8                12
D58V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      3   93
  9Q LOSS WILD-TYPE   17  257
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO                3                17
  YES              93               257
D58V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  9Q LOSS MUTATED                                            28
  9Q LOSS WILD-TYPE                                          97
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  9Q LOSS MUTATED                                       22             30
  9Q LOSS WILD-TYPE                                     72             54
                   vv
clus                LIFELONG NON-SMOKER
  9Q LOSS MUTATED                    13
  9Q LOSS WILD-TYPE                  41
D58V12, multiclass
                                             clus
vv                                            9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              28                97
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   22                72
  CURRENT SMOKER                                           30                54
  LIFELONG NON-SMOKER                                      13                41
D58V13, continuous
                   vv
clus                 R0  R1  R2  RX
  9Q LOSS MUTATED    57   4   2   4
  9Q LOSS WILD-TYPE 161   5   2   9
D58V14, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  R0              57               161
  R1               4                 5
  R2               2                 2
  RX               4                 9

Clustering(59) Variable = 10p loss mutation analysis
D59V1, survival
                    sevent
clus2                  0   1
  10P LOSS MUTATED    15   8
  10P LOSS WILD-TYPE 231  77
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                23                308 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                 8                 77 
$`10P LOSS MUTATED`
TCGA-05-5715 TCGA-38-4631 TCGA-38-6178 TCGA-44-3919 TCGA-44-6779 TCGA-44-7660 
        2.04        11.64         5.19         6.21        16.41         5.33 
TCGA-44-7669 TCGA-49-4488 TCGA-50-5931 TCGA-50-6591 TCGA-55-1596 TCGA-55-7281 
       18.87        28.57         8.78         3.88        45.17         0.59 
TCGA-55-8514 TCGA-64-1676 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-67-3770 
        6.97        56.81        83.84         0.10        16.67         0.99 
TCGA-78-7147 TCGA-78-7540 TCGA-86-8054 TCGA-86-8278 TCGA-95-7043 
       19.27        28.96         0.62         0.76         0.07 

$`10P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        0.99         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 
       85.32        37.71        49.02        28.37        35.28        44.61 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        8.32         6.44         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7661 
        2.70        63.72        32.45        36.49         9.80         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
        1.64        18.31        17.46        17.59        13.74         8.52 
TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
        3.22        76.21        28.11        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12         9.37         4.44        12.26        11.47        42.31 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 
        8.38        35.11        31.89        13.74        23.05        38.73 
TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       48.62         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       40.54        71.05        38.47         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        1.32         1.28         1.02         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 
        0.62         0.53         6.48         0.69         0.10         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 
        3.02         0.20         0.85         0.13         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 
        1.41         7.46         0.30         0.10         4.80         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        0.95         1.58         0.03         0.92         0.16         5.29 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1677 
       68.81        47.77        19.53        39.22        17.75        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5778 TCGA-64-5781 
       39.09        55.40        37.02        44.38        30.44        39.52 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
        4.24         7.56         6.05         2.30         2.93        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        3.25         2.50         4.21         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.25        20.42        17.06       163.10        27.16         5.65 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
      104.15       223.96         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
        8.02        53.33        10.75        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8055 TCGA-86-8074 
        0.36         0.89         0.23         1.12         0.33         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 
        1.41         0.85         0.69         0.53         1.12         1.45 
TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.56         1.28         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.15         0.36        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 
        9.76         4.18         6.08         1.12         5.36         0.69 
TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        1.32         4.34        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 
        8.65         5.95         0.59         0.72         5.95         5.36 
TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        4.80         0.49         8.22        14.04        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
        5.56         5.03         3.72         9.44         9.27         7.82 
TCGA-L4-A4E5 TCGA-L4-A4E6 
        6.97         2.50 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              0.07               0.03 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             83.84             223.96 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              6.97               8.50 
[1] "0.1 - 83.8 (7.0)"  "0.0 - 224.0 (8.5)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"10P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"10P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"10P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     18    8
  10P LOSS WILD-TYPE  185  159
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  FEMALE               18                185
  MALE                  8                159
D59V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  10P LOSS MUTATED                            2
  10P LOSS WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  10P LOSS MUTATED                                   2
  10P LOSS WILD-TYPE                                76
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10P LOSS MUTATED                                                   19
  10P LOSS WILD-TYPE                                                209
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  10P LOSS MUTATED                                            1
  10P LOSS WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  10P LOSS MUTATED                                               0
  10P LOSS WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  10P LOSS MUTATED                                0
  10P LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  10P LOSS MUTATED                                    1
  10P LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  10P LOSS MUTATED                              0                             0
  10P LOSS WILD-TYPE                            2                            16
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  10P LOSS MUTATED                                               0
  10P LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  10P LOSS MUTATED                                   1
  10P LOSS WILD-TYPE                                 6
D59V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  10P LOSS MUTATED     8  15   1   2
  10P LOSS WILD-TYPE 105 193  29  15
D59V6, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  T1                8                105
  T2               15                193
  T3                1                 29
  T4                2                 15
                    vv
clus                  N0  N1 N2+N3
  10P LOSS MUTATED    17   7     2
  10P LOSS WILD-TYPE 215  64    56
D59V7, multiclass
       clus
vv      10P LOSS MUTATED 10P LOSS WILD-TYPE
  N0                  17                215
  N1                   7                 64
  N2+N3                2                 56
                    vv
clus                  M0  M1 M1B  MX
  10P LOSS MUTATED    15   1   0   8
  10P LOSS WILD-TYPE 232  16   3  87
D59V8, multiclass
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  M0                15                232
  M1                 1                 16
  M1B                0                  3
  MX                 8                 87
                    vv
clus                   I  II III  IV
  10P LOSS MUTATED    13   7   4   1
  10P LOSS WILD-TYPE 185  74  61  19
D59V9, multiclass
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  I                 13                185
  II                 7                 74
  III                4                 61
  IV                 1                 19
D59V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      0   26
  10P LOSS WILD-TYPE   20  324
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                 0                 20
  YES               26                324
D59V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  10P LOSS MUTATED                                             6
  10P LOSS WILD-TYPE                                         119
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  10P LOSS MUTATED                                        4              8
  10P LOSS WILD-TYPE                                     90             76
                    vv
clus                 LIFELONG NON-SMOKER
  10P LOSS MUTATED                     7
  10P LOSS WILD-TYPE                  47
D59V12, multiclass
                                             clus
vv                                            10P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                6
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             8
  LIFELONG NON-SMOKER                                        7
                                             clus
vv                                            10P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                119
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      90
  CURRENT SMOKER                                              76
  LIFELONG NON-SMOKER                                         47
D59V13, continuous
                    vv
clus                  R0  R1  R2  RX
  10P LOSS MUTATED    17   1   0   0
  10P LOSS WILD-TYPE 201   8   4  13
D59V14, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  R0               17                201
  R1                1                  8
  R2                0                  4
  RX                0                 13

Clustering(60) Variable = 10q loss mutation analysis
D60V1, survival
                    sevent
clus2                  0   1
  10Q LOSS MUTATED    18   8
  10Q LOSS WILD-TYPE 228  77
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                26                305 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                 8                 77 
$`10Q LOSS MUTATED`
TCGA-05-4397 TCGA-05-5715 TCGA-38-4631 TCGA-44-3919 TCGA-44-7660 TCGA-44-7669 
       24.03         2.04        11.64         6.21         5.33        18.87 
TCGA-49-4505 TCGA-50-6591 TCGA-55-5899 TCGA-55-7281 TCGA-55-8514 TCGA-55-A4DG 
       14.07         3.88         2.86         0.59         6.97         5.29 
TCGA-64-1676 TCGA-64-5774 TCGA-64-5779 TCGA-67-3770 TCGA-69-8255 TCGA-73-4668 
       56.81        83.84        16.67         0.99         4.21        15.35 
TCGA-78-7147 TCGA-78-7535 TCGA-78-7540 TCGA-78-7542 TCGA-86-8278 TCGA-91-6847 
       19.27        31.20        28.96        10.55         0.76        26.93 
TCGA-95-7043 TCGA-95-7948 
        0.07         4.34 

$`10Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        28.37        35.28        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        8.32         6.44         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        5.03         1.64        18.31        17.46        17.59        13.74 
TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        8.52         3.22        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       35.54        46.72        32.84         8.81        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
       33.37         0.72         8.38        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 
       60.03        24.99        40.54        71.05        38.47         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.13         3.12         1.32         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 
        0.10         0.69         3.02         0.20         0.85         0.13 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        4.80         0.49         1.58         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        1.08         1.02         0.95         1.58         0.03         0.92 
TCGA-55-A494 TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 
        0.16        68.81        47.77        19.53        39.22        17.75 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 
       20.65        39.09        55.40        37.02        44.38         0.10 
TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       30.44        39.52         7.33         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
       22.68        13.61         4.24         7.56         6.05         2.30 
TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-71-6725 TCGA-73-4658 
        2.93        12.56         3.25         2.50         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        20.28         0.46         1.32         4.01 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.25        20.42        17.06       163.10        27.16         5.65 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 
      104.15       223.96         8.48        88.11        26.53         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       53.33        10.75        32.68        13.81         0.36         0.89 
TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 
        0.23         1.12         0.62         0.33         0.79         1.41 
TCGA-86-8076 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 
        0.85         0.69         0.53         1.12         1.45         0.56 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
        0.36         4.18         0.92         1.02         9.76         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 
        6.08         1.12         5.36         0.69         1.32        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       47.18        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 
        0.72         5.95         5.36         4.80         0.49         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        9.44         9.27         7.82         6.97         2.50 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              0.07               0.03 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             83.84             223.96 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              8.76               8.48 
[1] "0.1 - 83.8 (8.8)"  "0.0 - 224.0 (8.5)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"10Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"10Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"10Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     17   13
  10Q LOSS WILD-TYPE  186  154
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  FEMALE               17                186
  MALE                 13                154
D60V4, continuous
[1] "Remove cluster labels:" "10Q LOSS MUTATED"      
clus
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                 1                 27 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-69-7974 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4659         TCGA-73-4662 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-73-4666         TCGA-73-4676         TCGA-75-5122 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-7701         TCGA-86-7711 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-7713         TCGA-86-7714         TCGA-86-7954 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  10Q LOSS MUTATED                            1
  10Q LOSS WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  10Q LOSS MUTATED                                   5
  10Q LOSS WILD-TYPE                                73
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10Q LOSS MUTATED                                                   18
  10Q LOSS WILD-TYPE                                                210
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  10Q LOSS MUTATED                                            1
  10Q LOSS WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  10Q LOSS MUTATED                                               0
  10Q LOSS WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  10Q LOSS MUTATED                                0
  10Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  10Q LOSS MUTATED                                    2
  10Q LOSS WILD-TYPE                                  1
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  10Q LOSS MUTATED                              0                             0
  10Q LOSS WILD-TYPE                            2                            16
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  10Q LOSS MUTATED                                               2
  10Q LOSS WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  10Q LOSS MUTATED                                   1
  10Q LOSS WILD-TYPE                                 6
D60V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  10Q LOSS MUTATED    10  20   0   0
  10Q LOSS WILD-TYPE 103 188  30  17
D60V6, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  T1               10                103
  T2               20                188
  T3                0                 30
  T4                0                 17
                    vv
clus                  N0  N1 N2+N3
  10Q LOSS MUTATED    21   8     1
  10Q LOSS WILD-TYPE 211  63    57
D60V7, multiclass
       clus
vv      10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  N0                  21                211
  N1                   8                 63
  N2+N3                1                 57
                    vv
clus                  M0  M1 M1B  MX
  10Q LOSS MUTATED    21   1   0   7
  10Q LOSS WILD-TYPE 226  16   3  88
D60V8, multiclass
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  M0                21                226
  M1                 1                 16
  M1B                0                  3
  MX                 7                 88
                    vv
clus                   I  II III  IV
  10Q LOSS MUTATED    20   7   1   1
  10Q LOSS WILD-TYPE 178  74  64  19
D60V9, multiclass
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  I                 20                178
  II                 7                 74
  III                1                 64
  IV                 1                 19
D60V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      0   30
  10Q LOSS WILD-TYPE   20  320
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO                 0                 20
  YES               30                320
D60V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  10Q LOSS MUTATED                                            11
  10Q LOSS WILD-TYPE                                         114
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  10Q LOSS MUTATED                                        4              9
  10Q LOSS WILD-TYPE                                     90             75
                    vv
clus                 LIFELONG NON-SMOKER
  10Q LOSS MUTATED                     6
  10Q LOSS WILD-TYPE                  48
D60V12, multiclass
                                             clus
vv                                            10Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               11
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             9
  LIFELONG NON-SMOKER                                        6
                                             clus
vv                                            10Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                114
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      90
  CURRENT SMOKER                                              75
  LIFELONG NON-SMOKER                                         48
D60V13, continuous
                    vv
clus                  R0  R1  R2  RX
  10Q LOSS MUTATED    21   0   0   1
  10Q LOSS WILD-TYPE 197   9   4  12
D60V14, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  R0               21                197
  R1                0                  9
  R2                0                  4
  RX                1                 12

Clustering(61) Variable = 11p loss mutation analysis
D61V1, survival
                    sevent
clus2                  0   1
  11P LOSS MUTATED    19   5
  11P LOSS WILD-TYPE 227  80
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                24                307 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 5                 80 
$`11P LOSS MUTATED`
TCGA-05-4427 TCGA-35-5375 TCGA-38-4625 TCGA-44-5643 TCGA-49-4510 TCGA-50-6594 
       26.01         8.68        47.61         3.48        29.46        12.16 
TCGA-53-7624 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-A490 TCGA-55-A492 
       35.11        48.62        45.17         2.86         1.58         0.03 
TCGA-64-1676 TCGA-64-5774 TCGA-64-5815 TCGA-73-4670 TCGA-78-7145 TCGA-78-7535 
       56.81        83.84         7.33         0.46        27.16        31.20 
TCGA-86-7711 TCGA-86-7953 TCGA-91-6836 TCGA-95-7948 TCGA-97-8174 TCGA-L4-A4E5 
        0.89         1.12         0.36         4.34         5.36         6.97 

$`11P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 
        2.04         0.46         7.36         5.95        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 
        8.32         6.44         6.21         4.60        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
        2.70        63.72        32.45        36.49        16.41         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 
       17.59        13.74         8.52         3.22        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
        8.81        29.75        43.20        15.02        12.13        12.99 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
        4.93         0.03        20.48        71.47        48.82        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 
       11.05         6.21        33.37         0.72         8.38        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       13.74        23.05        38.73         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.13         3.12         1.32         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 
        0.10         0.69         3.02         0.20         0.85         0.13 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A493 TCGA-55-A494 
        3.45         1.08         1.02         0.95         0.92         0.16 
TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 
        5.29        68.81        47.77        19.53        39.22        17.75 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 
       20.65        39.09        55.40        37.02        44.38         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        16.67        39.52         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        2.04         0.59         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 
        6.12        22.68        13.61         4.24         7.56         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        2.30         2.93        12.56         3.25         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        20.28        15.35 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        1.32         4.01         1.25        20.42        17.06       163.10 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
        5.65        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       26.53         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7713 TCGA-86-8054 TCGA-86-8055 
       32.68        13.81         0.36         0.23         0.62         0.33 
TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 
        0.79         1.41         0.85         0.76         0.69         0.53 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        1.12         1.45         0.56         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        0.03         1.28         1.15        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        1.02         9.76         4.18         6.08         1.12         0.07 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        5.36         0.69         1.32        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 
       43.76         8.65         5.95         0.59         0.72         5.95 
TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        4.80         0.49         8.22        14.04        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
        5.56         5.03         3.72         9.44         9.27         7.82 
TCGA-L4-A4E6 
        2.50 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.03               0.03 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             83.84             223.96 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             8.005              8.480 
[1] "0.0 - 83.8 (8.0)"  "0.0 - 224.0 (8.5)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-L4-A4E6 
"11P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-L4-A4E6 
"11P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-L4-A4E6 
"11P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     14   13
  11P LOSS WILD-TYPE  189  154
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  FEMALE               14                189
  MALE                 13                154
D61V4, continuous
[1] "Remove cluster labels:" "11P LOSS MUTATED"      
clus
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 2                 26 
        TCGA-35-4122         TCGA-35-4123         TCGA-55-7283 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7725         TCGA-55-7910 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1677         TCGA-64-1681 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-69-7974         TCGA-71-6725 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4676         TCGA-75-5122 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-7701         TCGA-86-7713 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-7714         TCGA-86-7954         TCGA-91-6849 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-93-7348         TCGA-99-7458 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  11P LOSS MUTATED                            0
  11P LOSS WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  11P LOSS MUTATED                                   4
  11P LOSS WILD-TYPE                                74
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11P LOSS MUTATED                                                   20
  11P LOSS WILD-TYPE                                                208
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  11P LOSS MUTATED                                            0
  11P LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  11P LOSS MUTATED                                               1
  11P LOSS WILD-TYPE                                            15
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  11P LOSS MUTATED                                1
  11P LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  11P LOSS MUTATED                                    0
  11P LOSS WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  11P LOSS MUTATED                              0                             1
  11P LOSS WILD-TYPE                            2                            15
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  11P LOSS MUTATED                                               0
  11P LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  11P LOSS MUTATED                                   0
  11P LOSS WILD-TYPE                                 7
D61V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  11P LOSS MUTATED     8  16   2   1
  11P LOSS WILD-TYPE 105 192  28  16
D61V6, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  T1                8                105
  T2               16                192
  T3                2                 28
  T4                1                 16
                    vv
clus                  N0  N1 N2+N3
  11P LOSS MUTATED    16   8     3
  11P LOSS WILD-TYPE 216  63    55
D61V7, multiclass
       clus
vv      11P LOSS MUTATED 11P LOSS WILD-TYPE
  N0                  16                216
  N1                   8                 63
  N2+N3                3                 55
                    vv
clus                  M0  M1 M1B  MX
  11P LOSS MUTATED    19   3   0   5
  11P LOSS WILD-TYPE 228  14   3  90
D61V8, multiclass
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  M0                19                228
  M1                 3                 14
  M1B                0                  3
  MX                 5                 90
                    vv
clus                   I  II III  IV
  11P LOSS MUTATED    12   9   3   3
  11P LOSS WILD-TYPE 186  72  62  17
D61V9, multiclass
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  I                 12                186
  II                 9                 72
  III                3                 62
  IV                 3                 17
D61V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      1   26
  11P LOSS WILD-TYPE   19  324
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO                 1                 19
  YES               26                324
D61V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  11P LOSS MUTATED                                             9
  11P LOSS WILD-TYPE                                         116
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  11P LOSS MUTATED                                        5             12
  11P LOSS WILD-TYPE                                     89             72
                    vv
clus                 LIFELONG NON-SMOKER
  11P LOSS MUTATED                     1
  11P LOSS WILD-TYPE                  53
D61V12, multiclass
                                             clus
vv                                            11P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                9
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                            12
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            11P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                116
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      89
  CURRENT SMOKER                                              72
  LIFELONG NON-SMOKER                                         53
D61V13, continuous
                    vv
clus                  R0  R1  R2  RX
  11P LOSS MUTATED    20   1   0   1
  11P LOSS WILD-TYPE 198   8   4  12
D61V14, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  R0               20                198
  R1                1                  8
  R2                0                  4
  RX                1                 12

Clustering(62) Variable = 11q loss mutation analysis
D62V1, survival
                    sevent
clus2                  0   1
  11Q LOSS MUTATED    18   5
  11Q LOSS WILD-TYPE 228  80
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                23                308 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                 5                 80 
$`11Q LOSS MUTATED`
TCGA-05-4427 TCGA-05-4433 TCGA-35-5375 TCGA-38-4625 TCGA-44-4112 TCGA-44-5643 
       26.01        24.00         8.68        47.61         4.60         3.48 
TCGA-49-4510 TCGA-50-6594 TCGA-55-1595 TCGA-55-8094 TCGA-55-A490 TCGA-62-A470 
       29.46        12.16        48.62         0.13         1.58        39.22 
TCGA-64-1678 TCGA-64-5774 TCGA-64-5778 TCGA-64-5815 TCGA-69-7764 TCGA-73-4662 
       39.09        83.84        30.44         7.33        13.61        29.95 
TCGA-78-7145 TCGA-86-7953 TCGA-86-8054 TCGA-86-8074 TCGA-97-8174 
       27.16         1.12         0.62         0.79         5.36 

$`11Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 
        8.98        29.95        30.02        26.01        25.02        25.02 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        0.46         7.36         5.95        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       28.37        35.28        11.64        44.61         5.19        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        4.37        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.44         6.21        16.37         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       32.45        36.49        16.41         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        8.52         3.22        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 
       35.54        46.72        14.07        32.84         8.81        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       11.47        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
       33.37         0.72         8.38        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.69         0.10         0.69         3.02         0.20         0.85 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 
        3.45         1.08         1.02         0.95         0.03         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A472 
        0.16         5.29        68.81        47.77        19.53        17.75 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 
       56.81        20.65        55.40        37.02        44.38         0.10 
TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       22.68         4.24         7.56         6.05         2.30         2.93 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
       12.56         3.25         2.50         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 
        1.25        20.42        17.06       163.10         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
      104.15       223.96         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-8055 TCGA-86-8075 
       13.81         0.36         0.89         0.23         0.33         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 
        0.85         0.76         0.69         0.53         1.12         1.45 
TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.56         1.28         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.15         0.36        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        9.76         4.18         6.08         1.12         0.07         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.69         1.32         4.34        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 
       43.76         8.65         5.95         0.59         0.72         5.95 
TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        4.80         0.49         8.22        14.04        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
        5.56         5.03         3.72         9.44         9.27         7.82 
TCGA-L4-A4E5 TCGA-L4-A4E6 
        6.97         2.50 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              0.13               0.03 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             83.84             223.96 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             13.61               8.35 
[1] "0.1 - 83.8 (13.6)" "0.0 - 224.0 (8.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"11Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"11Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"11Q LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     11   13
  11Q LOSS WILD-TYPE  192  154
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  FEMALE               11                192
  MALE                 13                154
D62V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  11Q LOSS MUTATED                            2
  11Q LOSS WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  11Q LOSS MUTATED                                   5
  11Q LOSS WILD-TYPE                                73
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11Q LOSS MUTATED                                                   12
  11Q LOSS WILD-TYPE                                                216
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  11Q LOSS MUTATED                                            0
  11Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  11Q LOSS MUTATED                                               2
  11Q LOSS WILD-TYPE                                            14
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  11Q LOSS MUTATED                                1
  11Q LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  11Q LOSS MUTATED                                    0
  11Q LOSS WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  11Q LOSS MUTATED                              0                             2
  11Q LOSS WILD-TYPE                            2                            14
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  11Q LOSS MUTATED                                               0
  11Q LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  11Q LOSS MUTATED                                   0
  11Q LOSS WILD-TYPE                                 7
D62V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  11Q LOSS MUTATED     6  15   1   2
  11Q LOSS WILD-TYPE 107 193  29  15
D62V6, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  T1                6                107
  T2               15                193
  T3                1                 29
  T4                2                 15
                    vv
clus                  N0  N1 N2+N3
  11Q LOSS MUTATED    14   7     3
  11Q LOSS WILD-TYPE 218  64    55
D62V7, multiclass
       clus
vv      11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  N0                  14                218
  N1                   7                 64
  N2+N3                3                 55
                    vv
clus                  M0  M1 M1B  MX
  11Q LOSS MUTATED    21   1   1   1
  11Q LOSS WILD-TYPE 226  16   2  94
D62V8, multiclass
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  M0                21                226
  M1                 1                 16
  M1B                1                  2
  MX                 1                 94
                    vv
clus                   I  II III  IV
  11Q LOSS MUTATED    10   8   4   2
  11Q LOSS WILD-TYPE 188  73  61  18
D62V9, multiclass
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  I                 10                188
  II                 8                 73
  III                4                 61
  IV                 2                 18
D62V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      2   22
  11Q LOSS WILD-TYPE   18  328
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                 2                 18
  YES               22                328
D62V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  11Q LOSS MUTATED                                             8
  11Q LOSS WILD-TYPE                                         117
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  11Q LOSS MUTATED                                       10              5
  11Q LOSS WILD-TYPE                                     84             79
                    vv
clus                 LIFELONG NON-SMOKER
  11Q LOSS MUTATED                     1
  11Q LOSS WILD-TYPE                  53
D62V12, multiclass
                                             clus
vv                                            11Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                8
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    10
  CURRENT SMOKER                                             5
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            11Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                117
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      84
  CURRENT SMOKER                                              79
  LIFELONG NON-SMOKER                                         53
D62V13, continuous
                    vv
clus                  R0  R1  R2  RX
  11Q LOSS MUTATED    17   1   0   1
  11Q LOSS WILD-TYPE 201   8   4  12
D62V14, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  R0               17                201
  R1                1                  8
  R2                0                  4
  RX                1                 12

Clustering(63) Variable = 12p loss mutation analysis
D63V1, survival
                    sevent
clus2                  0   1
  12P LOSS MUTATED    22   8
  12P LOSS WILD-TYPE 224  77
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                30                301 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 8                 77 
$`12P LOSS MUTATED`
TCGA-05-4249 TCGA-44-2666 TCGA-44-7671 TCGA-50-5051 TCGA-50-5932 TCGA-50-5939 
       38.07         3.19        17.59        14.96        35.87        15.12 
TCGA-50-5942 TCGA-50-6594 TCGA-55-5899 TCGA-55-7727 TCGA-55-7914 TCGA-55-8087 
        4.44        12.16         2.86         1.02         0.10         0.69 
TCGA-55-8514 TCGA-55-A4DG TCGA-64-1676 TCGA-64-5778 TCGA-67-3771 TCGA-67-6217 
        6.97         5.29        56.81        30.44         1.97        13.87 
TCGA-69-8253 TCGA-73-4677 TCGA-78-7147 TCGA-78-7535 TCGA-86-8074 TCGA-91-6847 
        3.25         1.25        19.27        31.20         0.79        26.93 
TCGA-91-6849 TCGA-95-7043 TCGA-95-7947 TCGA-95-7948 TCGA-97-7547 TCGA-97-7938 
        0.92         0.07         1.32         4.34        47.18         0.59 

$`12P LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2668 
       13.15        17.39         3.39        15.78        13.15         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 
       18.87        17.46        13.74         8.52         3.22        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       48.82        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5941 TCGA-50-5944 
        8.78        77.88        21.47         8.45         9.37        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       11.47        42.31         3.88        25.51        11.05         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
       33.37         0.72         8.38        35.11        31.89        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62        45.17         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 
        3.02         0.20         0.85         0.13         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 
        1.41         7.46         0.30         0.10         4.80         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-62-8399 
        0.95         1.58         0.03         0.92         0.16        68.81 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1677 TCGA-64-1678 
       47.77        19.53        39.22        17.75        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       55.40        37.02        44.38        83.84         0.10        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       39.52         7.33         0.99         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.89         0.69         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
        4.24         7.56         6.05         2.30         2.93        12.56 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-7498 
       20.28        15.35         0.46         1.32         4.01        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 
       17.06       163.10        27.16         5.65        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
        8.48        88.11        26.53         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       28.96        10.55        32.68        13.81         0.36         0.89 
TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8075 TCGA-86-8076 
        0.23         1.12         0.62         0.33         1.41         0.85 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 
        0.76         0.69         0.53         1.12         1.45         0.56 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6848 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        0.36         4.18         1.02         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 
        1.12         5.36         0.69        31.66        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 
        8.65         5.95         0.72         5.95         5.36         4.80 
TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        0.49         8.22        14.04        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        5.03         3.72         9.44         9.27         7.82         6.97 
TCGA-L4-A4E6 
        2.50 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              0.07               0.03 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             56.81             223.96 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             4.865              8.650 
[1] "0.1 - 56.8 (4.9)"  "0.0 - 224.0 (8.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"12P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"12P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"12P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED     18   14
  12P LOSS WILD-TYPE  185  153
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  FEMALE               18                185
  MALE                 14                153
D63V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  12P LOSS MUTATED                            0
  12P LOSS WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  12P LOSS MUTATED                                   6
  12P LOSS WILD-TYPE                                72
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12P LOSS MUTATED                                                   21
  12P LOSS WILD-TYPE                                                207
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  12P LOSS MUTATED                                            0
  12P LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  12P LOSS MUTATED                                               2
  12P LOSS WILD-TYPE                                            14
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  12P LOSS MUTATED                                0
  12P LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  12P LOSS MUTATED                                    0
  12P LOSS WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  12P LOSS MUTATED                              0                             2
  12P LOSS WILD-TYPE                            2                            14
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  12P LOSS MUTATED                                               1
  12P LOSS WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  12P LOSS MUTATED                                   0
  12P LOSS WILD-TYPE                                 7
D63V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  12P LOSS MUTATED    13  18   1   0
  12P LOSS WILD-TYPE 100 190  29  17
D63V6, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  T1               13                100
  T2               18                190
  T3                1                 29
  T4                0                 17
                    vv
clus                  N0  N1 N2+N3
  12P LOSS MUTATED    21   7     4
  12P LOSS WILD-TYPE 211  64    54
D63V7, multiclass
       clus
vv      12P LOSS MUTATED 12P LOSS WILD-TYPE
  N0                  21                211
  N1                   7                 64
  N2+N3                4                 54
                    vv
clus                  M0  M1 M1B  MX
  12P LOSS MUTATED    20   0   0  12
  12P LOSS WILD-TYPE 227  17   3  83
D63V8, multiclass
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  M0                20                227
  M1                 0                 17
  M1B                0                  3
  MX                12                 83
                    vv
clus                   I  II III  IV
  12P LOSS MUTATED    21   6   4   0
  12P LOSS WILD-TYPE 177  75  61  20
D63V9, multiclass
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  I                 21                177
  II                 6                 75
  III                4                 61
  IV                 0                 20
D63V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      2   30
  12P LOSS WILD-TYPE   18  320
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                 2                 18
  YES               30                320
D63V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  12P LOSS MUTATED                                            10
  12P LOSS WILD-TYPE                                         115
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  12P LOSS MUTATED                                       12              8
  12P LOSS WILD-TYPE                                     82             76
                    vv
clus                 LIFELONG NON-SMOKER
  12P LOSS MUTATED                     1
  12P LOSS WILD-TYPE                  53
D63V12, multiclass
                                             clus
vv                                            12P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               10
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    12
  CURRENT SMOKER                                             8
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            12P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                115
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      82
  CURRENT SMOKER                                              76
  LIFELONG NON-SMOKER                                         53
D63V13, continuous
                    vv
clus                  R0  R1  R2  RX
  12P LOSS MUTATED    19   0   0   0
  12P LOSS WILD-TYPE 199   9   4  13
D63V14, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  R0               19                199
  R1                0                  9
  R2                0                  4
  RX                0                 13

Clustering(64) Variable = 12q loss mutation analysis
D64V1, survival
                    sevent
clus2                  0   1
  12Q LOSS MUTATED    11   8
  12Q LOSS WILD-TYPE 235  77
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                19                312 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 8                 77 
$`12Q LOSS MUTATED`
TCGA-44-6779 TCGA-44-7671 TCGA-50-5932 TCGA-50-5939 TCGA-50-6594 TCGA-55-6984 
       16.41        17.59        35.87        15.12        12.16        24.99 
TCGA-55-7727 TCGA-55-8514 TCGA-55-A4DG TCGA-64-5778 TCGA-67-6217 TCGA-73-4677 
        1.02         6.97         5.29        30.44        13.87         1.25 
TCGA-78-7147 TCGA-78-7535 TCGA-91-6847 TCGA-91-7771 TCGA-95-7043 TCGA-95-7948 
       19.27        31.20        26.93         1.02         0.07         4.34 
TCGA-97-7547 
       47.18 

$`12Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61         5.19        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        4.60         3.48        16.37         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       32.45        36.49         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.31        18.87        17.46        13.74         8.52         3.22 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        48.82        14.96        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        77.88        21.47         8.45 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       25.51        11.05         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       35.11        31.89        13.74        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6985 
        7.76         2.20        45.34        32.71        60.03        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.32         1.28         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.53         6.48         0.69         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 
        0.20         0.85         0.13         0.49         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 
        7.46         0.30         0.10         4.80         0.49         1.58 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.61         2.14         3.45         1.08         1.02         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-62-8399 TCGA-62-A46O 
        1.58         0.03         0.92         0.16        68.81        47.77 
TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
       19.53        39.22        17.75        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       55.40        37.02        44.38        83.84         0.10        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       39.52         7.33         0.99         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        0.59         0.89         0.69         5.06         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       13.61         4.24         7.56         6.05         2.30         2.93 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
       12.56         3.25         2.50         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        4.01        20.42        17.06       163.10        27.16         5.65 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 
      104.15       223.96         8.48        88.11        26.53         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 
        0.36         0.89         0.23         1.12         0.62         0.33 
TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 
        0.79         1.41         0.85         0.76         0.69         0.53 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        1.12         1.45         0.56         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 
        0.03         1.28         1.15         0.36         4.18         0.92 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 
        9.76         4.18         6.08         1.12         5.36         0.69 
TCGA-95-7947 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
        1.32        31.66        48.53        43.76         8.65         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 
        0.59         0.72         5.95         5.36         4.80         0.49 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
        8.22        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        3.72         9.44         9.27         7.82         6.97         2.50 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              0.07               0.03 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             47.18             223.96 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             15.12               8.35 
[1] "0.1 - 47.2 (15.1)" "0.0 - 224.0 (8.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"12Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"12Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"12Q LOSS WILD-TYPE" 
[1] "hr=" "2"  
D64V2, continuous
D64V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED     10   11
  12Q LOSS WILD-TYPE  193  156
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  FEMALE               10                193
  MALE                 11                156
D64V4, continuous
[1] "Remove cluster labels:" "12Q LOSS MUTATED"      
clus
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 1                 27 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-69-7974         TCGA-71-6725 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4666 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4676         TCGA-75-5122 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-7701         TCGA-86-7711 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-7713         TCGA-86-7714         TCGA-86-7954 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  12Q LOSS MUTATED                            0
  12Q LOSS WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  12Q LOSS MUTATED                                   5
  12Q LOSS WILD-TYPE                                73
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12Q LOSS MUTATED                                                   13
  12Q LOSS WILD-TYPE                                                215
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  12Q LOSS MUTATED                                            0
  12Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  12Q LOSS MUTATED                                               1
  12Q LOSS WILD-TYPE                                            15
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  12Q LOSS MUTATED                                0
  12Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  12Q LOSS MUTATED                                    0
  12Q LOSS WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  12Q LOSS MUTATED                              0                             1
  12Q LOSS WILD-TYPE                            2                            15
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  12Q LOSS MUTATED                                               1
  12Q LOSS WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  12Q LOSS MUTATED                                   0
  12Q LOSS WILD-TYPE                                 7
D64V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  12Q LOSS MUTATED     4  15   2   0
  12Q LOSS WILD-TYPE 109 193  28  17
D64V6, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  T1                4                109
  T2               15                193
  T3                2                 28
  T4                0                 17
                    vv
clus                  N0  N1 N2+N3
  12Q LOSS MUTATED    13   6     2
  12Q LOSS WILD-TYPE 219  65    56
D64V7, multiclass
       clus
vv      12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  N0                  13                219
  N1                   6                 65
  N2+N3                2                 56
                    vv
clus                  M0  M1 M1B  MX
  12Q LOSS MUTATED    13   0   0   8
  12Q LOSS WILD-TYPE 234  17   3  87
D64V8, multiclass
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  M0                13                234
  M1                 0                 17
  M1B                0                  3
  MX                 8                 87
                    vv
clus                   I  II III  IV
  12Q LOSS MUTATED    12   7   2   0
  12Q LOSS WILD-TYPE 186  74  63  20
D64V9, multiclass
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  I                 12                186
  II                 7                 74
  III                2                 63
  IV                 0                 20
D64V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      0   21
  12Q LOSS WILD-TYPE   20  329
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                 0                 20
  YES               21                329
D64V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  12Q LOSS MUTATED                                             8
  12Q LOSS WILD-TYPE                                         117
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  12Q LOSS MUTATED                                        8              3
  12Q LOSS WILD-TYPE                                     86             81
                    vv
clus                 LIFELONG NON-SMOKER
  12Q LOSS MUTATED                     0
  12Q LOSS WILD-TYPE                  54
D64V12, multiclass
                                             clus
vv                                            12Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                8
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     8
  CURRENT SMOKER                                             3
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            12Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                117
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      86
  CURRENT SMOKER                                              81
  LIFELONG NON-SMOKER                                         54
D64V13, continuous
                    vv
clus                  R0  R1  R2  RX
  12Q LOSS MUTATED    11   0   0   0
  12Q LOSS WILD-TYPE 207   9   4  13
D64V14, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  R0               11                207
  R1                0                  9
  R2                0                  4
  RX                0                 13

Clustering(65) Variable = 13q loss mutation analysis
D65V1, survival
                    sevent
clus2                  0   1
  13Q LOSS MUTATED    54  23
  13Q LOSS WILD-TYPE 192  62
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                77                254 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                23                 62 
$`13Q LOSS MUTATED`
TCGA-05-4250 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4432 
        3.98        24.03        47.05         8.02        20.05        25.02 
TCGA-05-5423 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4632 TCGA-38-6178 
        4.96         5.95         8.68        47.61        44.61         5.19 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6779 TCGA-44-7669 TCGA-44-8119 TCGA-49-4507 
        3.48        16.37        16.41        18.87         3.22         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-50-5051 TCGA-50-5931 TCGA-50-5935 TCGA-50-5936 
       29.46        29.75        14.96         8.78        21.47         8.45 
TCGA-50-5944 TCGA-50-6597 TCGA-50-7109 TCGA-53-7813 TCGA-55-1592 TCGA-55-1595 
       12.26        33.37         8.38        13.74        23.05        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6981 TCGA-55-7576 TCGA-55-7903 TCGA-55-8094 
       45.17         2.86        45.34         1.32         0.62         0.13 
TCGA-55-8514 TCGA-55-8616 TCGA-55-A48Z TCGA-62-A46O TCGA-62-A472 TCGA-64-1676 
        6.97         1.58         0.95        47.77        17.75        56.81 
TCGA-64-1678 TCGA-64-1681 TCGA-64-5779 TCGA-67-3770 TCGA-69-7760 TCGA-69-7764 
       39.09        44.38        16.67         0.99         5.06        13.61 
TCGA-69-7979 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-7499 TCGA-78-7145 
        2.93        23.38        29.95        15.35        17.06        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7154 TCGA-78-7155 TCGA-78-7539 TCGA-86-7711 
        5.65        19.27        19.50        38.50        10.75         0.89 
TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8075 TCGA-86-8279 TCGA-86-8280 
        0.23         1.12         0.62         1.41         0.69         0.53 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 TCGA-95-7948 TCGA-97-7546 TCGA-97-7554 
       41.33         1.28         0.36         4.34        31.66         8.65 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-L4-A4E5 
        5.56         5.03         9.44         9.27         6.97 

$`13Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4415 
       38.07        19.92        14.01        37.02         9.96         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 
       14.93         8.98        29.95        30.02        26.01        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 
       25.02        24.00        15.02         1.02         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        2.04         0.46         7.36        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       28.37        35.28        11.64        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
        4.60         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 
        9.80         5.33         5.03         1.64        18.31        17.46 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       17.59        13.74         8.52        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4514 
       12.66        35.54        46.72        14.07        32.84        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
        9.27        35.87        77.88        15.12         9.37         4.44 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-55-1594 TCGA-55-6543 
        6.21         0.72        35.11        31.89        38.73         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6982 
       48.49         3.88         5.46         7.76         2.20        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        1.12         0.13         3.12         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        0.79         1.78         0.53         6.48         0.69         0.10 
TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8097 TCGA-55-8299 
        0.69         3.02         0.20         0.85         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 
        1.41         7.46         0.30         0.10         4.80         0.49 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A490 
        1.61         2.14         3.45         1.08         1.02         1.58 
TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46P 
        0.03         0.92         0.16         5.29        68.81        19.53 
TCGA-62-A470 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       39.22        20.65        55.40        37.02        83.84         0.10 
TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       30.44        39.52         7.33         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 
        0.59         0.89         0.69        13.87         6.12        22.68 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 
        4.24         7.56         6.05         2.30        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4670 
        2.50         4.21         2.01        52.57        20.28         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-78-7143 TCGA-78-7148 
        1.32         4.01         1.25        20.42       163.10        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7156 TCGA-78-7158 
       35.93        21.86        39.48        24.99        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 
       88.11        26.53        31.20         8.02        53.33        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-8055 TCGA-86-8074 
       10.55        32.68        13.81         0.36         0.33         0.79 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 
        0.85         0.76         1.12         1.45         0.56         1.28 
TCGA-91-6828 TCGA-91-6830 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.22         0.03         1.15        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        1.02         9.76         4.18         6.08         1.12         0.07 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        5.36         0.69         1.32        47.18        48.53        43.76 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 
        5.95         0.59         0.72         5.95         5.36         4.80 
TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-J2-8194 
        0.49         8.22        14.04        15.06         1.45         3.72 
TCGA-J2-A4AG TCGA-L4-A4E6 
        7.82         2.50 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              0.13               0.03 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             56.81             223.96 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              9.44               7.92 
[1] "0.1 - 56.8 (9.4)"  "0.0 - 224.0 (7.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-L4-A4E6 
"13Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-L4-A4E6 
"13Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-L4-A4E6 
"13Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D65V2, continuous
D65V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     49   36
  13Q LOSS WILD-TYPE  154  131
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  FEMALE               49                154
  MALE                 36                131
D65V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  13Q LOSS MUTATED                            6
  13Q LOSS WILD-TYPE                          5
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  13Q LOSS MUTATED                                  15
  13Q LOSS WILD-TYPE                                63
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  13Q LOSS MUTATED                                                   55
  13Q LOSS WILD-TYPE                                                173
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  13Q LOSS MUTATED                                            0
  13Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  13Q LOSS MUTATED                                               5
  13Q LOSS WILD-TYPE                                            11
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  13Q LOSS MUTATED                                1
  13Q LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  13Q LOSS MUTATED                                    1
  13Q LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  13Q LOSS MUTATED                              0                             1
  13Q LOSS WILD-TYPE                            2                            15
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  13Q LOSS MUTATED                                               0
  13Q LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  13Q LOSS MUTATED                                   1
  13Q LOSS WILD-TYPE                                 6
D65V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  13Q LOSS MUTATED    22  51   6   5
  13Q LOSS WILD-TYPE  91 157  24  12
D65V6, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  T1               22                 91
  T2               51                157
  T3                6                 24
  T4                5                 12
                    vv
clus                  N0  N1 N2+N3
  13Q LOSS MUTATED    48  19    16
  13Q LOSS WILD-TYPE 184  52    42
D65V7, multiclass
       clus
vv      13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  N0                  48                184
  N1                  19                 52
  N2+N3               16                 42
                    vv
clus                  M0  M1 M1B  MX
  13Q LOSS MUTATED    58   6   1  18
  13Q LOSS WILD-TYPE 189  11   2  77
D65V8, multiclass
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  M0                58                189
  M1                 6                 11
  M1B                1                  2
  MX                18                 77
                    vv
clus                   I  II III  IV
  13Q LOSS MUTATED    39  20  19   7
  13Q LOSS WILD-TYPE 159  61  46  13
D65V9, multiclass
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  I                 39                159
  II                20                 61
  III               19                 46
  IV                 7                 13
D65V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED      5   80
  13Q LOSS WILD-TYPE   15  270
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO                 5                 15
  YES               80                270
D65V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  13Q LOSS MUTATED                                            25
  13Q LOSS WILD-TYPE                                         100
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  13Q LOSS MUTATED                                       17             24
  13Q LOSS WILD-TYPE                                     77             60
                    vv
clus                 LIFELONG NON-SMOKER
  13Q LOSS MUTATED                    15
  13Q LOSS WILD-TYPE                  39
D65V12, multiclass
                                             clus
vv                                            13Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               25
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    17
  CURRENT SMOKER                                            24
  LIFELONG NON-SMOKER                                       15
                                             clus
vv                                            13Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                100
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      77
  CURRENT SMOKER                                              60
  LIFELONG NON-SMOKER                                         39
D65V13, continuous
                    vv
clus                  R0  R1  R2  RX
  13Q LOSS MUTATED    51   3   2   3
  13Q LOSS WILD-TYPE 167   6   2  10
D65V14, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  R0               51                167
  R1                3                  6
  R2                2                  2
  RX                3                 10

Clustering(66) Variable = 14q loss mutation analysis
D66V1, survival
                    sevent
clus2                  0   1
  14Q LOSS MUTATED    26   8
  14Q LOSS WILD-TYPE 220  77
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                34                297 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                 8                 77 
$`14Q LOSS MUTATED`
TCGA-05-4396 TCGA-05-4405 TCGA-05-4427 TCGA-38-4625 TCGA-38-4632 TCGA-44-5643 
        9.96        20.05        26.01        47.61        44.61         3.48 
TCGA-44-6146 TCGA-44-7669 TCGA-44-7671 TCGA-49-4514 TCGA-50-5931 TCGA-55-1595 
        9.93        18.87        17.59        43.20         8.78        48.62 
TCGA-55-7281 TCGA-55-8092 TCGA-55-8094 TCGA-55-8514 TCGA-62-A46O TCGA-64-1680 
        0.59         0.85         0.13         6.97        47.77        37.02 
TCGA-64-5778 TCGA-64-5779 TCGA-67-3774 TCGA-69-7980 TCGA-73-4662 TCGA-78-7146 
       30.44        16.67         0.59        12.56        29.95         5.65 
TCGA-78-7150 TCGA-78-7535 TCGA-86-7711 TCGA-86-7953 TCGA-86-8054 TCGA-86-8279 
       21.86        31.20         0.89         1.12         0.62         0.69 
TCGA-91-7771 TCGA-95-7948 TCGA-97-7547 TCGA-J2-A4AD 
        1.02         4.34        47.18         9.44 

$`14Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        1.02         4.96         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F 
       28.37        35.28        11.64         5.19        26.30         4.37 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       18.87        19.10        13.15        17.39         3.39        15.78 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       13.15         3.19         8.09        10.22         8.32         6.44 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21         4.60        16.37         6.84         0.30         3.35 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41         9.80         5.33         5.03         1.64 
TCGA-44-7667 TCGA-44-7670 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 
       18.31        17.46        13.74         8.52         3.22        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        29.75        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 
       35.11        31.89        13.74        23.05        38.73        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       71.05        38.47         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.28         1.02         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.53         6.48         0.69         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 
        0.20         0.49         7.07         1.41         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        0.10         4.80         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46P TCGA-62-A470 
        0.92         0.16         5.29        68.81        19.53        39.22 
TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 
       17.75        56.81        20.65        39.09        55.40        44.38 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       83.84         0.10        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        0.59         2.04         0.89         0.69        13.87         5.06 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 
        6.12        22.68        13.61         4.24         7.56         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 
        2.30         2.93         3.25         2.50         4.21         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        20.28        15.35         0.46         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
        4.01         1.25        20.42        17.06       163.10        27.16 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       19.27        20.58        35.93        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 
      104.15       223.96         8.48        88.11        26.53         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7713 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
        0.36         0.23         0.33         0.79         1.41         0.85 
TCGA-86-8278 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 
        0.76         0.53         1.12         1.45         0.56         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
       26.93         4.18         0.92         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 
        1.12         0.07         5.36         0.69         1.32        31.66 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 
        5.95         5.36         4.80         0.49         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AE 
       15.06         1.45         5.56         5.03         3.72         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        7.82         6.97         2.50 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              0.13               0.03 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             48.62             223.96 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             11.26               8.22 
[1] "0.1 - 48.6 (11.3)" "0.0 - 224.0 (8.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"14Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"14Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"14Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED     21   20
  14Q LOSS WILD-TYPE  182  147
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  FEMALE               21                182
  MALE                 20                147
D66V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  14Q LOSS MUTATED                            2
  14Q LOSS WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  14Q LOSS MUTATED                                   7
  14Q LOSS WILD-TYPE                                71
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  14Q LOSS MUTATED                                                   25
  14Q LOSS WILD-TYPE                                                203
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  14Q LOSS MUTATED                                            0
  14Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  14Q LOSS MUTATED                                               3
  14Q LOSS WILD-TYPE                                            13
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  14Q LOSS MUTATED                                1
  14Q LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  14Q LOSS MUTATED                                    0
  14Q LOSS WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  14Q LOSS MUTATED                              1                             2
  14Q LOSS WILD-TYPE                            1                            14
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  14Q LOSS MUTATED                                               0
  14Q LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  14Q LOSS MUTATED                                   0
  14Q LOSS WILD-TYPE                                 7
D66V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  14Q LOSS MUTATED     9  27   3   2
  14Q LOSS WILD-TYPE 104 181  27  15
D66V6, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  T1                9                104
  T2               27                181
  T3                3                 27
  T4                2                 15
                    vv
clus                  N0  N1 N2+N3
  14Q LOSS MUTATED    28   8     5
  14Q LOSS WILD-TYPE 204  63    53
D66V7, multiclass
       clus
vv      14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  N0                  28                204
  N1                   8                 63
  N2+N3                5                 53
                    vv
clus                  M0  M1 M1B  MX
  14Q LOSS MUTATED    30   2   1   7
  14Q LOSS WILD-TYPE 217  15   2  88
D66V8, multiclass
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  M0                30                217
  M1                 2                 15
  M1B                1                  2
  MX                 7                 88
                    vv
clus                   I  II III  IV
  14Q LOSS MUTATED    23   8   6   3
  14Q LOSS WILD-TYPE 175  73  59  17
D66V9, multiclass
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  I                 23                175
  II                 8                 73
  III                6                 59
  IV                 3                 17
D66V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      3   38
  14Q LOSS WILD-TYPE   17  312
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO                 3                 17
  YES               38                312
D66V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  14Q LOSS MUTATED                                            15
  14Q LOSS WILD-TYPE                                         110
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  14Q LOSS MUTATED                                       12             10
  14Q LOSS WILD-TYPE                                     82             74
                    vv
clus                 LIFELONG NON-SMOKER
  14Q LOSS MUTATED                     3
  14Q LOSS WILD-TYPE                  51
D66V12, multiclass
                                             clus
vv                                            14Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               15
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    12
  CURRENT SMOKER                                            10
  LIFELONG NON-SMOKER                                        3
                                             clus
vv                                            14Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                110
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      82
  CURRENT SMOKER                                              74
  LIFELONG NON-SMOKER                                         51
D66V13, continuous
                    vv
clus                  R0  R1  R2  RX
  14Q LOSS MUTATED    27   0   0   3
  14Q LOSS WILD-TYPE 191   9   4  10
D66V14, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  R0               27                191
  R1                0                  9
  R2                0                  4
  RX                3                 10

Clustering(67) Variable = 15q loss mutation analysis
D67V1, survival
                    sevent
clus2                  0   1
  15Q LOSS MUTATED    46  19
  15Q LOSS WILD-TYPE 200  66
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                65                266 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                19                 66 
$`15Q LOSS MUTATED`
TCGA-05-4249 TCGA-05-4398 TCGA-05-4402 TCGA-05-4424 TCGA-05-5425 TCGA-35-4123 
       38.07        47.05         8.02        30.02         2.96         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
        8.68        47.61        49.02        35.28        11.64         5.19 
TCGA-44-2659 TCGA-44-3919 TCGA-44-7660 TCGA-44-7667 TCGA-44-7670 TCGA-44-8117 
       17.39         6.21         5.33        18.31        17.46         8.52 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 TCGA-49-4514 TCGA-50-5051 TCGA-50-5935 
       28.57        12.66        46.72        43.20        14.96        21.47 
TCGA-50-6591 TCGA-50-6594 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-5899 
        3.88        12.16         8.38        31.89        13.74         2.86 
TCGA-55-7281 TCGA-55-7576 TCGA-55-7727 TCGA-55-7903 TCGA-55-8094 TCGA-55-A490 
        0.59         1.32         1.02         0.62         0.13         1.58 
TCGA-55-A4DG TCGA-62-A472 TCGA-64-1676 TCGA-64-1681 TCGA-64-5774 TCGA-64-5779 
        5.29        17.75        56.81        44.38        83.84        16.67 
TCGA-67-3770 TCGA-69-7973 TCGA-73-4662 TCGA-73-4668 TCGA-73-7499 TCGA-78-7145 
        0.99         7.56        29.95        15.35        17.06        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7542 
        5.65        19.27        88.11        31.20         8.02        10.55 
TCGA-86-8074 TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 TCGA-91-6847 TCGA-95-7039 
        0.79        41.33         1.28         0.36        26.93         1.12 
TCGA-95-7567 TCGA-97-7554 TCGA-J2-8192 TCGA-J2-A4AD TCGA-L4-A4E5 
        5.36         8.65         5.03         9.44         6.97 

$`15Q LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4426 
       20.05         2.96        14.93         8.98        29.95        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-38-4626 
        4.96         0.99         2.04         0.46         7.36        85.32 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4632 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       37.71        28.37        44.61        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       19.10        13.15         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 
        8.09        10.22         8.32         6.44         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7669 TCGA-44-7671 
       16.41         9.80         5.03         1.64        18.87        17.59 
TCGA-44-7672 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4494 TCGA-49-4505 
       13.74         3.22        76.21        28.11        35.54        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        29.75        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        77.88         8.45        15.12         9.37         4.44 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       12.26        11.47        42.31        25.51        11.05         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       33.37         0.72        35.11        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
       45.17         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 
       71.05        38.47         1.12         0.13         3.12         1.28 
TCGA-55-7726 TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        1.02         0.79         1.78         0.53         6.48         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8097 
        0.10         0.69         3.02         0.20         0.85         0.49 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        7.07         1.41         7.46         0.30         0.10         4.80 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        6.97         0.49         1.58         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 
        1.08         1.02         0.95         0.03         0.92         0.16 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-64-1677 TCGA-64-1678 
       68.81        47.77        19.53        39.22        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 
       55.40        37.02         0.10        30.44        39.52         7.33 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         5.06         6.12        22.68        13.61         4.24 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        6.05         2.30         2.93        12.56         3.25         2.50 
TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4670 
        4.21         2.01        52.57        23.38        20.28         0.46 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-78-7143 TCGA-78-7148 
        1.32         4.01         1.25        20.42       163.10        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
      223.96         8.48        26.53        53.33        10.75        28.96 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 
       32.68        13.81         0.36         0.89         0.23         1.12 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        0.62         0.33         1.41         0.85         0.76         0.69 
TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 
        0.53         1.12         1.45         0.56         1.28         1.22 
TCGA-91-6830 TCGA-91-6835 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.03         1.15         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
        4.18         6.08         0.07         0.69         1.32         4.34 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 TCGA-97-7938 
       31.66        47.18        48.53        43.76         5.95         0.59 
TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 
        0.72         5.95         5.36         4.80         0.49         8.22 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8194 TCGA-J2-A4AE 
       14.04        15.06         1.45         5.56         3.72         9.27 
TCGA-J2-A4AG TCGA-L4-A4E6 
        7.82         2.50 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              0.13               0.03 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             88.11             223.96 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
            11.640              7.935 
[1] "0.1 - 88.1 (11.6)" "0.0 - 224.0 (7.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-L4-A4E6 
"15Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-L4-A4E6 
"15Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-L4-A4E6 
"15Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     47   30
  15Q LOSS WILD-TYPE  156  137
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  FEMALE               47                156
  MALE                 30                137
D67V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  15Q LOSS MUTATED                            1
  15Q LOSS WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  15Q LOSS MUTATED                                  10
  15Q LOSS WILD-TYPE                                68
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  15Q LOSS MUTATED                                                   55
  15Q LOSS WILD-TYPE                                                173
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  15Q LOSS MUTATED                                            0
  15Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  15Q LOSS MUTATED                                               3
  15Q LOSS WILD-TYPE                                            13
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  15Q LOSS MUTATED                                0
  15Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  15Q LOSS MUTATED                                    2
  15Q LOSS WILD-TYPE                                  1
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  15Q LOSS MUTATED                              0                             5
  15Q LOSS WILD-TYPE                            2                            11
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  15Q LOSS MUTATED                                               1
  15Q LOSS WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  15Q LOSS MUTATED                                   0
  15Q LOSS WILD-TYPE                                 7
D67V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  15Q LOSS MUTATED    25  42   7   3
  15Q LOSS WILD-TYPE  88 166  23  14
D67V6, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  T1               25                 88
  T2               42                166
  T3                7                 23
  T4                3                 14
                    vv
clus                  N0  N1 N2+N3
  15Q LOSS MUTATED    49  15    12
  15Q LOSS WILD-TYPE 183  56    46
D67V7, multiclass
       clus
vv      15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  N0                  49                183
  N1                  15                 56
  N2+N3               12                 46
                    vv
clus                  M0  M1 M1B  MX
  15Q LOSS MUTATED    50   4   1  19
  15Q LOSS WILD-TYPE 197  13   2  76
D67V8, multiclass
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  M0                50                197
  M1                 4                 13
  M1B                1                  2
  MX                19                 76
                    vv
clus                   I  II III  IV
  15Q LOSS MUTATED    39  19  13   5
  15Q LOSS WILD-TYPE 159  62  52  15
D67V9, multiclass
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  I                 39                159
  II                19                 62
  III               13                 52
  IV                 5                 15
D67V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      5   72
  15Q LOSS WILD-TYPE   15  278
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO                 5                 15
  YES               72                278
D67V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  15Q LOSS MUTATED                                            24
  15Q LOSS WILD-TYPE                                         101
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  15Q LOSS MUTATED                                       18             23
  15Q LOSS WILD-TYPE                                     76             61
                    vv
clus                 LIFELONG NON-SMOKER
  15Q LOSS MUTATED                    11
  15Q LOSS WILD-TYPE                  43
D67V12, multiclass
                                             clus
vv                                            15Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               24
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    18
  CURRENT SMOKER                                            23
  LIFELONG NON-SMOKER                                       11
                                             clus
vv                                            15Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                101
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      76
  CURRENT SMOKER                                              61
  LIFELONG NON-SMOKER                                         43
D67V13, continuous
                    vv
clus                  R0  R1  R2  RX
  15Q LOSS MUTATED    48   4   1   2
  15Q LOSS WILD-TYPE 170   5   3  11
D67V14, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  R0               48                170
  R1                4                  5
  R2                1                  3
  RX                2                 11

Clustering(68) Variable = 16p loss mutation analysis
D68V1, survival
                    sevent
clus2                  0   1
  16P LOSS MUTATED    17  11
  16P LOSS WILD-TYPE 229  74
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                28                303 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                11                 74 
$`16P LOSS MUTATED`
TCGA-05-4396 TCGA-05-4402 TCGA-05-4420 TCGA-05-4427 TCGA-44-5643 TCGA-44-7660 
        9.96         8.02        29.95        26.01         3.48         5.33 
TCGA-44-8117 TCGA-44-8119 TCGA-49-4488 TCGA-49-6743 TCGA-50-5936 TCGA-50-6591 
        8.52         3.22        28.57        12.13         8.45         3.88 
TCGA-53-7624 TCGA-55-5899 TCGA-55-6968 TCGA-55-8094 TCGA-62-A470 TCGA-67-3770 
       35.11         2.86        42.48         0.13        39.22         0.99 
TCGA-73-4662 TCGA-78-7143 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-86-8054 
       29.95       163.10        88.11        31.20         8.02         0.62 
TCGA-91-6847 TCGA-95-7567 TCGA-97-7937 TCGA-L4-A4E5 
       26.93         5.36         5.95         6.97 

$`16P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
       47.05        20.05         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       28.37        35.28        11.64        44.61         5.19        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        4.37        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
        6.44         6.21         4.60        16.37         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 
       63.72        32.45        36.49        16.41         9.80         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        77.88        21.47        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        11.47        42.31        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 
       12.16         6.21        33.37         0.72         8.38        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
       13.74        23.05        38.73        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
       32.61         0.79        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.69         0.10         0.69         3.02         0.20         0.85 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
        0.92         0.16         5.29        68.81        47.77        19.53 
TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
       17.75        56.81        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
        4.24         7.56         6.05         2.30         2.93        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        3.25         2.50         4.21         2.01        52.57        23.38 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
       20.42        17.06        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
      223.96         8.48        26.53        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        32.68        13.81         0.36         0.89         0.23 
TCGA-86-7953 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        1.12         0.33         0.79         1.41         0.85         0.76 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 
        0.69         0.53         1.12         1.45         0.56         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.22        41.33         0.03         1.28         1.15         0.36 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        4.18         0.92         1.02         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 
        1.12         0.07         0.69         1.32         4.34        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 
       47.18        48.53        43.76         8.65         0.59         0.72 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 
        5.95         5.36         4.80         0.49         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 
        9.27         7.82         2.50 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              0.13               0.03 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            163.10             223.96 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             8.485              8.480 
[1] "0.1 - 163.1 (8.5)" "0.0 - 224.0 (8.5)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-L4-A4E6 
"16P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-L4-A4E6 
"16P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-L4-A4E6 
"16P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED     13   17
  16P LOSS WILD-TYPE  190  150
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  FEMALE               13                190
  MALE                 17                150
D68V4, continuous
[1] "Remove cluster labels:" "16P LOSS MUTATED"      
clus
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 1                 27 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7725 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7910         TCGA-55-7914         TCGA-64-1677 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-1681         TCGA-64-5778         TCGA-69-7974 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4659         TCGA-73-4666 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4668         TCGA-73-4676         TCGA-75-5122 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-7701         TCGA-86-7711 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-7713         TCGA-86-7714         TCGA-86-7954 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-6849         TCGA-93-7348         TCGA-99-7458 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  16P LOSS MUTATED                            2
  16P LOSS WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  16P LOSS MUTATED                                   5
  16P LOSS WILD-TYPE                                73
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16P LOSS MUTATED                                                   18
  16P LOSS WILD-TYPE                                                210
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  16P LOSS MUTATED                                            0
  16P LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  16P LOSS MUTATED                                               1
  16P LOSS WILD-TYPE                                            15
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  16P LOSS MUTATED                                1
  16P LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  16P LOSS MUTATED                                    1
  16P LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  16P LOSS MUTATED                              0                             1
  16P LOSS WILD-TYPE                            2                            15
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  16P LOSS MUTATED                                               0
  16P LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  16P LOSS MUTATED                                   1
  16P LOSS WILD-TYPE                                 6
D68V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  16P LOSS MUTATED     7  19   2   2
  16P LOSS WILD-TYPE 106 189  28  15
D68V6, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  T1                7                106
  T2               19                189
  T3                2                 28
  T4                2                 15
                    vv
clus                  N0  N1 N2+N3
  16P LOSS MUTATED    20   5     4
  16P LOSS WILD-TYPE 212  66    54
D68V7, multiclass
       clus
vv      16P LOSS MUTATED 16P LOSS WILD-TYPE
  N0                  20                212
  N1                   5                 66
  N2+N3                4                 54
                    vv
clus                  M0  M1 M1B  MX
  16P LOSS MUTATED    18   5   1   6
  16P LOSS WILD-TYPE 229  12   2  89
D68V8, multiclass
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  M0                18                229
  M1                 5                 12
  M1B                1                  2
  MX                 6                 89
                    vv
clus                   I  II III  IV
  16P LOSS MUTATED    16   3   6   5
  16P LOSS WILD-TYPE 182  78  59  15
D68V9, multiclass
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  I                 16                182
  II                 3                 78
  III                6                 59
  IV                 5                 15
D68V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      3   27
  16P LOSS WILD-TYPE   17  323
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO                 3                 17
  YES               27                323
D68V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  16P LOSS MUTATED                                             7
  16P LOSS WILD-TYPE                                         118
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  16P LOSS MUTATED                                        8             11
  16P LOSS WILD-TYPE                                     86             73
                    vv
clus                 LIFELONG NON-SMOKER
  16P LOSS MUTATED                     3
  16P LOSS WILD-TYPE                  51
D68V12, multiclass
                                             clus
vv                                            16P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                7
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     8
  CURRENT SMOKER                                            11
  LIFELONG NON-SMOKER                                        3
                                             clus
vv                                            16P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                118
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      86
  CURRENT SMOKER                                              73
  LIFELONG NON-SMOKER                                         51
D68V13, continuous
                    vv
clus                  R0  R1  R2  RX
  16P LOSS MUTATED    18   0   1   0
  16P LOSS WILD-TYPE 200   9   3  13
D68V14, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  R0               18                200
  R1                0                  9
  R2                1                  3
  RX                0                 13

Clustering(69) Variable = 16q loss mutation analysis
D69V1, survival
                    sevent
clus2                  0   1
  16Q LOSS MUTATED    34  12
  16Q LOSS WILD-TYPE 212  73
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                46                285 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                12                 73 
$`16Q LOSS MUTATED`
TCGA-05-4402 TCGA-05-4405 TCGA-05-4420 TCGA-05-4427 TCGA-05-4432 TCGA-35-4123 
        8.02        20.05        29.95        26.01        25.02         5.95 
TCGA-38-4625 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-7660 
       47.61         6.21         4.60         3.48        16.37         5.33 
TCGA-44-8117 TCGA-44-8119 TCGA-49-4488 TCGA-49-6743 TCGA-50-5936 TCGA-50-6591 
        8.52         3.22        28.57        12.13         8.45         3.88 
TCGA-53-7624 TCGA-55-1595 TCGA-55-5899 TCGA-55-6968 TCGA-55-7281 TCGA-62-A46O 
       35.11        48.62         2.86        42.48         0.59        47.77 
TCGA-62-A470 TCGA-64-5774 TCGA-64-5778 TCGA-67-3770 TCGA-69-7979 TCGA-73-4662 
       39.22        83.84        30.44         0.99         2.93        29.95 
TCGA-78-7143 TCGA-78-7146 TCGA-78-7152 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 
      163.10         5.65        39.48        88.11        31.20         8.02 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-91-6847 TCGA-91-7771 
        0.89         0.23         1.12         0.62        26.93         1.02 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7937 TCGA-L4-A4E5 
        5.36        31.66         5.95         6.97 

$`16Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 
       24.03        47.05         2.96        14.93         8.98        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02         1.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 
        2.96         0.99         2.04         0.46         7.36         8.68 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-5645 TCGA-44-6144 
        8.09        10.22         8.32         6.44         6.84         0.30 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        3.35         9.93         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 
       63.72        32.45        36.49        16.41         9.80         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46        29.75        43.20        15.02 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        77.88        21.47        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 
        4.44        12.26        11.47        42.31        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 
       12.16         6.21        33.37         0.72         8.38        31.89 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       13.74        23.05        38.73        45.17         0.07        32.61 
TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
        0.79        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 
       24.99        40.54        71.05        38.47         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        3.12         1.32         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 
        0.69         3.02         0.20         0.85         0.13         0.49 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        7.07         1.41         7.46         0.30         0.10         4.80 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        6.97         0.49         1.58         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        1.08         1.02         0.95         1.58         0.03         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46P TCGA-62-A472 TCGA-64-1676 
        0.16         5.29        68.81        19.53        17.75        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 
       20.65        39.09        55.40        37.02        44.38         0.10 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       16.67        39.52         7.33         1.97         0.59         2.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        0.59         0.89         0.69        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
       22.68        13.61         4.24         7.56         6.05         2.30 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
       12.56         3.25         2.50         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        20.28        15.35         0.46         1.32         4.01 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 
        1.25        20.42        17.06        27.16        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       35.93        21.86        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
        8.48        26.53        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 
       32.68        13.81         0.36         0.33         0.79         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 
        0.85         0.76         0.69         0.53         1.12         1.45 
TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.56         1.28         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 
        1.15         0.36         4.18         0.92         9.76         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
        6.08         1.12         0.07         0.69         1.32         4.34 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 
       47.18        48.53        43.76         8.65         0.59         0.72 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 
        5.95         5.36         4.80         0.49         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 
        9.27         7.82         2.50 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              0.23               0.03 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            163.10             223.96 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             8.485              8.480 
[1] "0.2 - 163.1 (8.5)" "0.0 - 224.0 (8.5)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-L4-A4E6 
"16Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-L4-A4E6 
"16Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-L4-A4E6 
"16Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED     25   24
  16Q LOSS WILD-TYPE  178  143
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  FEMALE               25                178
  MALE                 24                143
D69V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  16Q LOSS MUTATED                            4
  16Q LOSS WILD-TYPE                          7
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  16Q LOSS MUTATED                                   9
  16Q LOSS WILD-TYPE                                69
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16Q LOSS MUTATED                                                   28
  16Q LOSS WILD-TYPE                                                200
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  16Q LOSS MUTATED                                            0
  16Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  16Q LOSS MUTATED                                               3
  16Q LOSS WILD-TYPE                                            13
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  16Q LOSS MUTATED                                2
  16Q LOSS WILD-TYPE                              0
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  16Q LOSS MUTATED                                    1
  16Q LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  16Q LOSS MUTATED                              0                             1
  16Q LOSS WILD-TYPE                            2                            15
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  16Q LOSS MUTATED                                               0
  16Q LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  16Q LOSS MUTATED                                   1
  16Q LOSS WILD-TYPE                                 6
D69V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  16Q LOSS MUTATED    14  32   2   1
  16Q LOSS WILD-TYPE  99 176  28  16
D69V6, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  T1               14                 99
  T2               32                176
  T3                2                 28
  T4                1                 16
                    vv
clus                  N0  N1 N2+N3
  16Q LOSS MUTATED    35   7     6
  16Q LOSS WILD-TYPE 197  64    52
D69V7, multiclass
       clus
vv      16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  N0                  35                197
  N1                   7                 64
  N2+N3                6                 52
                    vv
clus                  M0  M1 M1B  MX
  16Q LOSS MUTATED    34   5   0   8
  16Q LOSS WILD-TYPE 213  12   3  87
D69V8, multiclass
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  M0                34                213
  M1                 5                 12
  M1B                0                  3
  MX                 8                 87
                    vv
clus                   I  II III  IV
  16Q LOSS MUTATED    31   6   7   4
  16Q LOSS WILD-TYPE 167  75  58  16
D69V9, multiclass
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  I                 31                167
  II                 6                 75
  III                7                 58
  IV                 4                 16
D69V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      3   46
  16Q LOSS WILD-TYPE   17  304
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO                 3                 17
  YES               46                304
D69V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  16Q LOSS MUTATED                                            15
  16Q LOSS WILD-TYPE                                         110
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  16Q LOSS MUTATED                                       10             17
  16Q LOSS WILD-TYPE                                     84             67
                    vv
clus                 LIFELONG NON-SMOKER
  16Q LOSS MUTATED                     6
  16Q LOSS WILD-TYPE                  48
D69V12, multiclass
                                             clus
vv                                            16Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               15
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    10
  CURRENT SMOKER                                            17
  LIFELONG NON-SMOKER                                        6
                                             clus
vv                                            16Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                110
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      84
  CURRENT SMOKER                                              67
  LIFELONG NON-SMOKER                                         48
D69V13, continuous
                    vv
clus                  R0  R1  R2  RX
  16Q LOSS MUTATED    30   0   1   1
  16Q LOSS WILD-TYPE 188   9   3  12
D69V14, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  R0               30                188
  R1                0                  9
  R2                1                  3
  RX                1                 12

Clustering(70) Variable = 17p loss mutation analysis
D70V1, survival
                    sevent
clus2                  0   1
  17P LOSS MUTATED    60  20
  17P LOSS WILD-TYPE 186  65
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                80                251 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                20                 65 
$`17P LOSS MUTATED`
TCGA-05-4249 TCGA-05-4396 TCGA-05-4397 TCGA-05-4420 TCGA-05-4426 TCGA-05-4433 
       38.07         9.96        24.03        29.95        26.01        24.00 
TCGA-05-5429 TCGA-35-4123 TCGA-38-4625 TCGA-44-2659 TCGA-44-2665 TCGA-44-3919 
        0.99         5.95        47.61        17.39        13.15         6.21 
TCGA-44-5643 TCGA-44-6779 TCGA-44-7660 TCGA-44-8117 TCGA-49-4488 TCGA-49-4505 
        3.48        16.41         5.33         8.52        28.57        14.07 
TCGA-49-4512 TCGA-50-5931 TCGA-50-5936 TCGA-50-5944 TCGA-50-6591 TCGA-50-6673 
       29.75         8.78         8.45        12.26         3.88         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
        8.38        35.11        31.89        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-6968 TCGA-55-6972 TCGA-55-6982 TCGA-55-6984 TCGA-55-6985 
       45.17        42.48        48.49        32.71        24.99        40.54 
TCGA-55-7573 TCGA-55-7576 TCGA-55-7726 TCGA-55-7727 TCGA-55-7903 TCGA-55-7910 
        0.13         1.32         1.02         1.02         0.62         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-8097 TCGA-55-A48Y TCGA-55-A48Z TCGA-62-A46O 
        0.69         0.10         0.49         1.02         0.95        47.77 
TCGA-62-A472 TCGA-64-1676 TCGA-64-1679 TCGA-64-5774 TCGA-64-5815 TCGA-67-3770 
       17.75        56.81        55.40        83.84         7.33         0.99 
TCGA-67-3773 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 
        2.04        13.87         5.06         6.12        13.61         4.24 
TCGA-69-7974 TCGA-78-7146 TCGA-78-7150 TCGA-78-7535 TCGA-78-7536 TCGA-78-7540 
        6.05         5.65        21.86        31.20         8.02        28.96 
TCGA-86-8278 TCGA-86-8668 TCGA-91-6831 TCGA-91-6847 TCGA-95-7039 TCGA-95-7947 
        0.76         1.45         1.28        26.93         1.12         1.32 
TCGA-95-7948 TCGA-97-7554 TCGA-97-7938 TCGA-99-8025 TCGA-J2-8192 TCGA-J2-A4AD 
        4.34         8.65         0.59        14.04         5.03         9.44 
TCGA-J2-A4AE TCGA-L4-A4E5 
        9.27         6.97 

$`17P LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
        3.98        19.92        14.01        37.02        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4427 
       20.05         2.96        14.93         8.98        30.02        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        25.02        15.02         1.02         4.96         2.96 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        2.04         0.46         7.36         8.68        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       26.30         4.37        18.87        19.10        13.15         3.39 
TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       15.78         3.19         8.09        10.22         8.32         6.44 
TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        4.60        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
       36.49         9.80         5.03         1.64        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 
       17.46        17.59        13.74         3.22        76.21        28.11 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        32.84         8.81        29.46 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       49.28         8.05         9.27        35.87        77.88        21.47 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 
       15.12         9.37         4.44        11.47        42.31        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-53-7813 TCGA-55-5899 
       11.05        12.16         6.21        33.37        13.74         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
        0.07        32.61         0.79        40.70        15.25         0.92 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6983 
        3.88         5.46         7.76         2.20        45.34        60.03 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7574 TCGA-55-7725 
       71.05        38.47         0.59         1.12         3.12         1.28 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        0.79         1.78         0.53         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 
        0.85         0.13         7.07         1.41         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
        0.10         4.80         6.97         0.49         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        2.14         3.45         1.08         1.58         0.03         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46P TCGA-62-A470 TCGA-64-1677 
        0.16         5.29        68.81        19.53        39.22        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       39.09        37.02        44.38         0.10        30.44        16.67 
TCGA-64-5781 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       39.52         1.97         0.59         0.59         0.89         0.69 
TCGA-69-7763 TCGA-69-7973 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 
       22.68         7.56         2.30         2.93        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 
       20.42        17.06       163.10        27.16        19.27        20.58 
TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       35.93        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7542 
        8.48        88.11        26.53        53.33        10.75        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 
       32.68        13.81         0.36         0.89         0.23         1.12 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8279 
        0.62         0.33         0.79         1.41         0.85         0.69 
TCGA-86-8280 TCGA-86-8585 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        0.53         1.12         0.56         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        0.03         1.15         0.36         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 
        9.76         4.18         6.08         0.07         5.36         0.69 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 TCGA-97-7941 
       31.66        47.18        48.53        43.76         5.95         0.72 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8028 
        5.95         5.36         4.80         0.49         8.22        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8194 TCGA-J2-A4AG TCGA-L4-A4E6 
        1.45         5.56         3.72         7.82         2.50 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              0.10               0.03 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             83.84             223.96 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             8.715              8.220 
[1] "0.1 - 83.8 (8.7)"  "0.0 - 224.0 (8.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-L4-A4E6 
"17P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-L4-A4E6 
"17P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-L4-A4E6 
"17P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D70V2, continuous
D70V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     54   40
  17P LOSS WILD-TYPE  149  127
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  FEMALE               54                149
  MALE                 40                127
D70V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  17P LOSS MUTATED                            3
  17P LOSS WILD-TYPE                          8
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  17P LOSS MUTATED                                  18
  17P LOSS WILD-TYPE                                60
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17P LOSS MUTATED                                                   63
  17P LOSS WILD-TYPE                                                165
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  17P LOSS MUTATED                                            2
  17P LOSS WILD-TYPE                                          2
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  17P LOSS MUTATED                                               2
  17P LOSS WILD-TYPE                                            14
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  17P LOSS MUTATED                                1
  17P LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  17P LOSS MUTATED                                    1
  17P LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  17P LOSS MUTATED                              0                             2
  17P LOSS WILD-TYPE                            2                            14
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  17P LOSS MUTATED                                               0
  17P LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  17P LOSS MUTATED                                   2
  17P LOSS WILD-TYPE                                 5
D70V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  17P LOSS MUTATED    32  53   6   3
  17P LOSS WILD-TYPE  81 155  24  14
D70V6, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  T1               32                 81
  T2               53                155
  T3                6                 24
  T4                3                 14
                    vv
clus                  N0  N1 N2+N3
  17P LOSS MUTATED    60  19    15
  17P LOSS WILD-TYPE 172  52    43
D70V7, multiclass
       clus
vv      17P LOSS MUTATED 17P LOSS WILD-TYPE
  N0                  60                172
  N1                  19                 52
  N2+N3               15                 43
                    vv
clus                  M0  M1 M1B  MX
  17P LOSS MUTATED    63   4   0  27
  17P LOSS WILD-TYPE 184  13   3  68
D70V8, multiclass
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  M0                63                184
  M1                 4                 13
  M1B                0                  3
  MX                27                 68
                    vv
clus                   I  II III  IV
  17P LOSS MUTATED    49  25  16   4
  17P LOSS WILD-TYPE 149  56  49  16
D70V9, multiclass
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  I                 49                149
  II                25                 56
  III               16                 49
  IV                 4                 16
D70V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED      3   91
  17P LOSS WILD-TYPE   17  259
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO                 3                 17
  YES               91                259
D70V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  17P LOSS MUTATED                                            21
  17P LOSS WILD-TYPE                                         104
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  17P LOSS MUTATED                                       27             26
  17P LOSS WILD-TYPE                                     67             58
                    vv
clus                 LIFELONG NON-SMOKER
  17P LOSS MUTATED                    16
  17P LOSS WILD-TYPE                  38
D70V12, multiclass
                                             clus
vv                                            17P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               21
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    27
  CURRENT SMOKER                                            26
  LIFELONG NON-SMOKER                                       16
                                             clus
vv                                            17P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                104
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      67
  CURRENT SMOKER                                              58
  LIFELONG NON-SMOKER                                         38
D70V13, continuous
                    vv
clus                  R0  R1  R2  RX
  17P LOSS MUTATED    62   1   0   1
  17P LOSS WILD-TYPE 156   8   4  12
D70V14, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  R0               62                156
  R1                1                  8
  R2                0                  4
  RX                1                 12

Clustering(71) Variable = 17q loss mutation analysis
D71V1, survival
                    sevent
clus2                  0   1
  17Q LOSS MUTATED     8   6
  17Q LOSS WILD-TYPE 238  79
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                14                317 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 6                 79 
$`17Q LOSS MUTATED`
TCGA-05-4396 TCGA-44-2665 TCGA-49-4488 TCGA-49-4512 TCGA-50-5931 TCGA-53-7624 
        9.96        13.15        28.57        29.75         8.78        35.11 
TCGA-55-6972 TCGA-69-7764 TCGA-78-7146 TCGA-78-7535 TCGA-95-7948 TCGA-J2-8192 
       48.49        13.61         5.65        31.20         4.34         5.03 
TCGA-J2-A4AD TCGA-L4-A4E5 
        9.44         6.97 

$`17Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05         8.02        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       29.95        30.02        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02         1.02         4.96         2.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        47.61 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       85.32        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 
       13.15        17.39         3.39        15.78         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        17.46        17.59        13.74         8.52         3.22 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        43.20        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        4.44        12.26        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       15.25         0.92         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.28         1.02         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.53         6.48         0.69         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 
        0.20         0.85         0.13         0.49         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 
        7.46         0.30         0.10         4.80         6.97         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        0.95         1.58         0.03         0.92         0.16         5.29 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 
       68.81        47.77        19.53        39.22        17.75        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        44.38        83.84 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        0.10        30.44        16.67        39.52         7.33         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        1.97         0.59         2.04         0.59         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-69-7973 
       13.87         5.06         6.12        22.68         4.24         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        6.05         2.30         2.93        12.56         3.25         2.50 
TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.21         2.01        52.57        23.38        29.95        20.28 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 
       15.35         0.46         1.32         4.01         1.25        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
       17.06       163.10        27.16        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       21.86        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
        8.48        88.11        26.53         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       28.96        10.55        32.68        13.81         0.36         0.89 
TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 
        0.23         1.12         0.62         0.33         0.79         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 
        0.85         0.76         0.69         0.53         1.12         1.45 
TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.56         1.28         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.15         0.36        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        9.76         4.18         6.08         1.12         0.07         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        0.69         1.32        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 
        8.65         5.95         0.59         0.72         5.95         5.36 
TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        4.80         0.49         8.22        14.04        15.06         1.45 
TCGA-99-8033 TCGA-J2-8194 TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 
        5.56         3.72         9.27         7.82         2.50 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              4.34               0.03 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             48.49             223.96 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
            11.555              8.320 
[1] "4.3 - 48.5 (11.6)" "0.0 - 224.0 (8.3)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-L4-A4E6 
"17Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-L4-A4E6 
"17Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-L4-A4E6 
"17Q LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED     11    5
  17Q LOSS WILD-TYPE  192  162
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  FEMALE               11                192
  MALE                  5                162
D71V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  17Q LOSS MUTATED                            0
  17Q LOSS WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  17Q LOSS MUTATED                                   4
  17Q LOSS WILD-TYPE                                74
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17Q LOSS MUTATED                                                   10
  17Q LOSS WILD-TYPE                                                218
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  17Q LOSS MUTATED                                            0
  17Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  17Q LOSS MUTATED                                               0
  17Q LOSS WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  17Q LOSS MUTATED                                0
  17Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  17Q LOSS MUTATED                                    1
  17Q LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  17Q LOSS MUTATED                              0                             1
  17Q LOSS WILD-TYPE                            2                            15
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  17Q LOSS MUTATED                                               0
  17Q LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  17Q LOSS MUTATED                                   0
  17Q LOSS WILD-TYPE                                 7
D71V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  17Q LOSS MUTATED     4  11   0   1
  17Q LOSS WILD-TYPE 109 197  30  16
D71V6, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  T1                4                109
  T2               11                197
  T3                0                 30
  T4                1                 16
                    vv
clus                  N0  N1 N2+N3
  17Q LOSS MUTATED     9   4     3
  17Q LOSS WILD-TYPE 223  67    55
D71V7, multiclass
       clus
vv      17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  N0                   9                223
  N1                   4                 67
  N2+N3                3                 55
                    vv
clus                  M0  M1 M1B  MX
  17Q LOSS MUTATED    11   1   0   4
  17Q LOSS WILD-TYPE 236  16   3  91
D71V8, multiclass
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  M0                11                236
  M1                 1                 16
  M1B                0                  3
  MX                 4                 91
                    vv
clus                   I  II III  IV
  17Q LOSS MUTATED     8   3   4   1
  17Q LOSS WILD-TYPE 190  78  61  19
D71V9, multiclass
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  I                  8                190
  II                 3                 78
  III                4                 61
  IV                 1                 19
D71V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      0   16
  17Q LOSS WILD-TYPE   20  334
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO                 0                 20
  YES               16                334
D71V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  17Q LOSS MUTATED                                             3
  17Q LOSS WILD-TYPE                                         122
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  17Q LOSS MUTATED                                        4              4
  17Q LOSS WILD-TYPE                                     90             80
                    vv
clus                 LIFELONG NON-SMOKER
  17Q LOSS MUTATED                     4
  17Q LOSS WILD-TYPE                  50
D71V12, multiclass
                                             clus
vv                                            17Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                3
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             4
  LIFELONG NON-SMOKER                                        4
                                             clus
vv                                            17Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                122
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      90
  CURRENT SMOKER                                              80
  LIFELONG NON-SMOKER                                         50
D71V13, continuous
                    vv
clus                  R0  R1  R2  RX
  17Q LOSS MUTATED    10   0   0   1
  17Q LOSS WILD-TYPE 208   9   4  12
D71V14, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  R0               10                208
  R1                0                  9
  R2                0                  4
  RX                1                 12

Clustering(72) Variable = 18p loss mutation analysis
D72V1, survival
                    sevent
clus2                  0   1
  18P LOSS MUTATED    39  14
  18P LOSS WILD-TYPE 207  71
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                53                278 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                14                 71 
$`18P LOSS MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4426 TCGA-05-5425 TCGA-05-5715 TCGA-35-5375 
        3.98        37.02        26.01         2.96         2.04         8.68 
TCGA-38-4632 TCGA-44-6779 TCGA-44-7669 TCGA-44-7670 TCGA-49-4488 TCGA-49-4505 
       44.61        16.41        18.87        17.46        28.57        14.07 
TCGA-49-4512 TCGA-50-5936 TCGA-50-6597 TCGA-53-7624 TCGA-55-1594 TCGA-55-1596 
       29.75         8.45        33.37        35.11        38.73        45.17 
TCGA-55-6972 TCGA-55-6975 TCGA-55-7281 TCGA-55-7283 TCGA-55-7726 TCGA-55-7728 
       48.49         3.88         0.59         1.12         1.02         0.79 
TCGA-55-7910 TCGA-55-8087 TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-62-A46O 
        6.48         0.69         0.95         1.58         0.03        47.77 
TCGA-62-A470 TCGA-62-A472 TCGA-67-3770 TCGA-67-6216 TCGA-69-7765 TCGA-69-7979 
       39.22        17.75         0.99         0.69         4.24         2.93 
TCGA-73-4666 TCGA-73-4670 TCGA-73-7499 TCGA-78-7146 TCGA-78-7167 TCGA-78-7535 
       20.28         0.46        17.06         5.65        88.11        31.20 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-91-6836 TCGA-95-7039 TCGA-95-7567 
        0.76         0.69         0.53         0.36         1.12         5.36 
TCGA-95-7948 TCGA-97-7937 TCGA-97-7941 TCGA-J2-8192 TCGA-L4-A4E5 
        4.34         5.95         0.72         5.03         6.97 

$`18P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       38.07        19.92        14.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        20.05         2.96        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       30.02        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        1.02         4.96         0.99         0.46         7.36         5.95 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       11.64         5.19        26.30         4.37        18.87        19.10 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        17.39         3.39        15.78        13.15         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        10.22         8.32         6.44         6.21         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        3.48        16.37         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       36.49         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 
       17.59        13.74         8.52         3.22        76.21        28.11 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        32.84         8.81        29.46 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       21.47        15.12         9.37         4.44        12.26        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1595 
        0.72         8.38        31.89        13.74        23.05        48.62 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       15.25         0.92         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7815 
        0.13         3.12         1.32         1.28         1.02         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-8089 TCGA-55-8090 
        0.62         0.53         0.69         0.10         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.85         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 
        0.30         0.10         4.80         6.97         0.49         1.58 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A493 
        1.61         2.14         3.45         1.08         1.02         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46P TCGA-64-1676 TCGA-64-1677 
        0.16         5.29        68.81        19.53        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 
       30.44        16.67        39.52         7.33         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
        2.04         0.59         0.89        13.87         5.06         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 
       22.68        13.61         7.56         6.05         2.30        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        3.25         2.50         4.21         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 
       29.95        15.35         1.32         4.01         1.25        20.42 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
      163.10        27.16        19.27        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       26.53         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 
       32.68        13.81         0.36         0.89         0.23         1.12 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8585 
        0.62         0.33         0.79         1.41         0.85         1.12 
TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        1.45         0.56         1.28         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.28         1.15        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 
        9.76         4.18         6.08         0.07         0.69         1.32 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 
       31.66        47.18        48.53        43.76         8.65         0.59 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 
        5.95         5.36         4.80         0.49         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
       15.06         1.45         5.56         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E6 
        7.82         2.50 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              0.03               0.03 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             88.11             223.96 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             5.650              8.895 
[1] "0.0 - 88.1 (5.7)"  "0.0 - 224.0 (8.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-L4-A4E6 
"18P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-L4-A4E6 
"18P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-L4-A4E6 
"18P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D72V2, continuous
D72V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     41   24
  18P LOSS WILD-TYPE  162  143
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  FEMALE               41                162
  MALE                 24                143
D72V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  18P LOSS MUTATED                            3
  18P LOSS WILD-TYPE                          8
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  18P LOSS MUTATED                                  15
  18P LOSS WILD-TYPE                                63
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18P LOSS MUTATED                                                   37
  18P LOSS WILD-TYPE                                                191
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  18P LOSS MUTATED                                            0
  18P LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  18P LOSS MUTATED                                               3
  18P LOSS WILD-TYPE                                            13
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  18P LOSS MUTATED                                0
  18P LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  18P LOSS MUTATED                                    2
  18P LOSS WILD-TYPE                                  1
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  18P LOSS MUTATED                              0                             2
  18P LOSS WILD-TYPE                            2                            14
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  18P LOSS MUTATED                                               0
  18P LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  18P LOSS MUTATED                                   3
  18P LOSS WILD-TYPE                                 4
D72V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  18P LOSS MUTATED    13  45   5   2
  18P LOSS WILD-TYPE 100 163  25  15
D72V6, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  T1               13                100
  T2               45                163
  T3                5                 25
  T4                2                 15
                    vv
clus                  N0  N1 N2+N3
  18P LOSS MUTATED    39  15    11
  18P LOSS WILD-TYPE 193  56    47
D72V7, multiclass
       clus
vv      18P LOSS MUTATED 18P LOSS WILD-TYPE
  N0                  39                193
  N1                  15                 56
  N2+N3               11                 47
                    vv
clus                  M0  M1 M1B  MX
  18P LOSS MUTATED    37   6   0  20
  18P LOSS WILD-TYPE 210  11   3  75
D72V8, multiclass
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  M0                37                210
  M1                 6                 11
  M1B                0                  3
  MX                20                 75
                    vv
clus                   I  II III  IV
  18P LOSS MUTATED    27  18  11   7
  18P LOSS WILD-TYPE 171  63  54  13
D72V9, multiclass
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  I                 27                171
  II                18                 63
  III               11                 54
  IV                 7                 13
D72V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      1   64
  18P LOSS WILD-TYPE   19  286
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO                 1                 19
  YES               64                286
D72V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  18P LOSS MUTATED                                            18
  18P LOSS WILD-TYPE                                         107
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  18P LOSS MUTATED                                       17             17
  18P LOSS WILD-TYPE                                     77             67
                    vv
clus                 LIFELONG NON-SMOKER
  18P LOSS MUTATED                    12
  18P LOSS WILD-TYPE                  42
D72V12, multiclass
                                             clus
vv                                            18P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               18
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    17
  CURRENT SMOKER                                            17
  LIFELONG NON-SMOKER                                       12
                                             clus
vv                                            18P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                107
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      77
  CURRENT SMOKER                                              67
  LIFELONG NON-SMOKER                                         42
D72V13, continuous
                    vv
clus                  R0  R1  R2  RX
  18P LOSS MUTATED    44   1   1   0
  18P LOSS WILD-TYPE 174   8   3  13
D72V14, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  R0               44                174
  R1                1                  8
  R2                1                  3
  RX                0                 13

Clustering(73) Variable = 18q loss mutation analysis
D73V1, survival
                    sevent
clus2                  0   1
  18Q LOSS MUTATED    56  21
  18Q LOSS WILD-TYPE 190  64
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                77                254 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                21                 64 
$`18Q LOSS MUTATED`
TCGA-05-4250 TCGA-05-4402 TCGA-05-4405 TCGA-05-4426 TCGA-05-4427 TCGA-05-4433 
        3.98         8.02        20.05        26.01        26.01        24.00 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-5375 TCGA-38-4631 
        4.96         2.96         0.99         2.04         8.68        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-6146 TCGA-44-6779 TCGA-44-7669 TCGA-44-7670 
       44.61         5.19         9.93        16.41        18.87        17.46 
TCGA-49-4488 TCGA-49-4505 TCGA-49-4512 TCGA-50-5936 TCGA-50-5946 TCGA-50-6594 
       28.57        14.07        29.75         8.45        11.47        12.16 
TCGA-50-6597 TCGA-53-7624 TCGA-55-1594 TCGA-55-1596 TCGA-55-6972 TCGA-55-6975 
       33.37        35.11        38.73        45.17        48.49         3.88 
TCGA-55-6980 TCGA-55-7281 TCGA-55-7283 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        2.20         0.59         1.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7910 TCGA-55-8087 TCGA-55-8094 TCGA-55-A48Z TCGA-55-A490 
        0.79         6.48         0.69         0.13         0.95         1.58 
TCGA-55-A492 TCGA-62-A46O TCGA-62-A470 TCGA-62-A472 TCGA-64-5775 TCGA-64-5778 
        0.03        47.77        39.22        17.75         0.10        30.44 
TCGA-67-3770 TCGA-67-6216 TCGA-69-7760 TCGA-69-7765 TCGA-69-7979 TCGA-73-4666 
        0.99         0.69         5.06         4.24         2.93        20.28 
TCGA-73-4670 TCGA-73-7499 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7150 
        0.46        17.06        27.16         5.65        19.27        21.86 
TCGA-78-7161 TCGA-78-7535 TCGA-78-7536 TCGA-78-7539 TCGA-86-7711 TCGA-86-8278 
        7.04        31.20         8.02        10.75         0.89         0.76 
TCGA-86-8279 TCGA-86-8280 TCGA-91-6836 TCGA-95-7567 TCGA-95-7947 TCGA-97-7547 
        0.69         0.53         0.36         5.36         1.32        47.18 
TCGA-97-7937 TCGA-97-7941 TCGA-97-8177 TCGA-J2-8192 TCGA-L4-A4E5 
        5.95         0.72         4.80         5.03         6.97 

$`18Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       38.07        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
       47.05         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 TCGA-35-3615 TCGA-35-4122 
       25.02        25.02        15.02         1.02         0.46         7.36 
TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        5.95        47.61        85.32        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       35.28        26.30         4.37        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 TCGA-44-6148 
       16.37         6.84         0.30         3.35         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 
        5.42         2.70        63.72        32.45        36.49         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7671 TCGA-44-7672 
        5.33         5.03         1.64        18.31        17.59        13.74 
TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 
        8.52         3.22        76.21        28.11        12.66        35.54 
TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 
       46.72        32.84         8.81        29.46        43.20        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       48.82        14.96        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 
        9.27         8.78        35.87        77.88        21.47        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        12.26        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 
       11.05         6.21         0.72         8.38        31.89        13.74 
TCGA-55-1592 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       23.05        48.62         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6978 TCGA-55-6979 
       42.48        40.70        15.25         0.92         5.46         7.76 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7573 TCGA-55-7574 TCGA-55-7727 TCGA-55-7815 TCGA-55-7903 
       38.47         0.13         3.12         1.02         1.78         0.62 
TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.53         0.69         0.10         3.02         0.20         0.85 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.49         7.07         1.41         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        3.45         1.08         1.02         0.92         0.16         5.29 
TCGA-62-8399 TCGA-62-A46P TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       68.81        19.53        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       37.02        44.38        83.84        16.67        39.52         7.33 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 
        1.97         0.59         2.04         0.59         0.89        13.87 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
        6.12        22.68        13.61         7.56         6.05         2.30 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
       12.56         3.25         2.50         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       23.38        29.95        15.35         1.32         4.01         1.25 
TCGA-73-7498 TCGA-78-7143 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 
       20.42       163.10        20.58        35.93        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7537 
      104.15       223.96         8.48        88.11        26.53        53.33 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7713 
       28.96        10.55        32.68        13.81         0.36         0.23 
TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
        1.12         0.62         0.33         0.79         1.41         0.85 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        1.12         1.45         0.56         1.28         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        0.03         1.28         1.15        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        1.02         9.76         4.18         6.08         1.12         0.07 
TCGA-95-7944 TCGA-95-7948 TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        0.69         4.34        31.66        48.53        43.76         8.65 
TCGA-97-7938 TCGA-97-8172 TCGA-97-8174 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 
        0.59         5.95         5.36         0.49         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
       15.06         1.45         5.56         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E6 
        7.82         2.50 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.03               0.03 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             48.49             223.96 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             6.480              9.125 
[1] "0.0 - 48.5 (6.5)"  "0.0 - 224.0 (9.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-L4-A4E6 
"18Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-L4-A4E6 
"18Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-L4-A4E6 
"18Q LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D73V2, continuous
D73V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     54   39
  18Q LOSS WILD-TYPE  149  128
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  FEMALE               54                149
  MALE                 39                128
D73V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  18Q LOSS MUTATED                            4
  18Q LOSS WILD-TYPE                          7
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  18Q LOSS MUTATED                                  24
  18Q LOSS WILD-TYPE                                54
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18Q LOSS MUTATED                                                   52
  18Q LOSS WILD-TYPE                                                176
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  18Q LOSS MUTATED                                            0
  18Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  18Q LOSS MUTATED                                               5
  18Q LOSS WILD-TYPE                                            11
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  18Q LOSS MUTATED                                0
  18Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  18Q LOSS MUTATED                                    2
  18Q LOSS WILD-TYPE                                  1
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  18Q LOSS MUTATED                              1                             2
  18Q LOSS WILD-TYPE                            1                            14
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  18Q LOSS MUTATED                                               0
  18Q LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  18Q LOSS MUTATED                                   3
  18Q LOSS WILD-TYPE                                 4
D73V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  18Q LOSS MUTATED    19  61   9   4
  18Q LOSS WILD-TYPE  94 147  21  13
D73V6, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  T1               19                 94
  T2               61                147
  T3                9                 21
  T4                4                 13
                    vv
clus                  N0  N1 N2+N3
  18Q LOSS MUTATED    55  22    15
  18Q LOSS WILD-TYPE 177  49    43
D73V7, multiclass
       clus
vv      18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  N0                  55                177
  N1                  22                 49
  N2+N3               15                 43
                    vv
clus                  M0  M1 M1B  MX
  18Q LOSS MUTATED    58   7   1  24
  18Q LOSS WILD-TYPE 189  10   2  71
D73V8, multiclass
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  M0                58                189
  M1                 7                 10
  M1B                1                  2
  MX                24                 71
                    vv
clus                   I  II III  IV
  18Q LOSS MUTATED    38  28  16   9
  18Q LOSS WILD-TYPE 160  53  49  11
D73V9, multiclass
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  I                 38                160
  II                28                 53
  III               16                 49
  IV                 9                 11
D73V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED      2   91
  18Q LOSS WILD-TYPE   18  259
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO                 2                 18
  YES               91                259
D73V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  18Q LOSS MUTATED                                            28
  18Q LOSS WILD-TYPE                                          97
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  18Q LOSS MUTATED                                       25             20
  18Q LOSS WILD-TYPE                                     69             64
                    vv
clus                 LIFELONG NON-SMOKER
  18Q LOSS MUTATED                    19
  18Q LOSS WILD-TYPE                  35
D73V12, multiclass
                                             clus
vv                                            18Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               28
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    25
  CURRENT SMOKER                                            20
  LIFELONG NON-SMOKER                                       19
                                             clus
vv                                            18Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 97
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      69
  CURRENT SMOKER                                              64
  LIFELONG NON-SMOKER                                         35
D73V13, continuous
                    vv
clus                  R0  R1  R2  RX
  18Q LOSS MUTATED    60   4   2   0
  18Q LOSS WILD-TYPE 158   5   2  13
D73V14, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  R0               60                158
  R1                4                  5
  R2                2                  2
  RX                0                 13

Clustering(74) Variable = 19p loss mutation analysis
D74V1, survival
                    sevent
clus2                  0   1
  19P LOSS MUTATED    53  31
  19P LOSS WILD-TYPE 193  54
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                84                247 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                31                 54 
$`19P LOSS MUTATED`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4402 TCGA-05-4415 TCGA-05-4420 
        3.98        14.01         9.96         8.02         2.96        29.95 
TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-35-4123 TCGA-38-4628 
       26.01        25.02        24.00        15.02         5.95        49.02 
TCGA-38-4630 TCGA-38-4631 TCGA-44-2655 TCGA-44-5644 TCGA-44-6146 TCGA-44-6779 
       35.28        11.64        18.87        16.37         9.93        16.41 
TCGA-44-7669 TCGA-44-7671 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4505 
       18.87        17.59         8.52         3.22        76.21        14.07 
TCGA-49-4507 TCGA-49-4510 TCGA-49-6742 TCGA-50-5051 TCGA-50-5931 TCGA-50-5932 
        8.81        29.46        15.02        14.96         8.78        35.87 
TCGA-50-5936 TCGA-50-5944 TCGA-50-6597 TCGA-50-7109 TCGA-53-7813 TCGA-55-1592 
        8.45        12.26        33.37         8.38        13.74        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6968 TCGA-55-6972 TCGA-55-6975 
       38.73        45.17         2.86        42.48        48.49         3.88 
TCGA-55-7576 TCGA-55-7910 TCGA-55-8092 TCGA-55-8094 TCGA-55-8512 TCGA-55-A494 
        1.32         6.48         0.85         0.13         0.10         0.16 
TCGA-62-A46O TCGA-62-A470 TCGA-64-1676 TCGA-64-5774 TCGA-64-5778 TCGA-67-3770 
       47.77        39.22        56.81        83.84        30.44         0.99 
TCGA-67-3774 TCGA-69-7764 TCGA-69-8255 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        0.59        13.61         4.21        20.28        15.35         0.46 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
        1.25        20.42        17.06         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7156 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 
       35.93        32.09         8.48        88.11        31.20         8.02 
TCGA-78-7539 TCGA-86-7713 TCGA-86-8075 TCGA-86-8280 TCGA-91-6836 TCGA-91-6849 
       10.75         0.23         1.41         0.53         0.36         0.92 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7948 TCGA-J2-A4AD TCGA-L4-A4E5 
        1.12         0.07         5.36         4.34         9.44         6.97 

$`19P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4405 
       38.07        19.92        37.02        24.03        47.05        20.05 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4430 TCGA-05-5420 
       14.93         8.98        30.02        26.01        25.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4632 
        8.68        47.61        85.32        37.71        28.37        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
        5.19        26.30         4.37        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        8.32         6.44         6.21         4.60         3.48         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
        0.30         3.35         7.76         3.12         5.42         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       63.72        32.45        36.49         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-7672 TCGA-49-4487 TCGA-49-4488 
        1.64        18.31        17.46        13.74        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4512 TCGA-49-4514 
       12.66        35.54        46.72        32.84        29.75        43.20 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        12.99         4.93         0.03        20.48        71.47 
TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       48.82        25.81         9.76        49.28         8.05         9.27 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 
       77.88        21.47        15.12         9.37         4.44        11.47 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 
        0.72        35.11        31.89        48.62         0.07        32.61 
TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6978 TCGA-55-6979 
        0.79        40.70        15.25         0.92         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.28         1.02         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        0.53         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8513 
        0.49         7.07         1.41         7.46         0.30         4.80 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        6.97         0.49         1.58         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        1.08         1.02         0.95         1.58         0.03         0.92 
TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46P TCGA-62-A472 TCGA-64-1677 TCGA-64-1678 
        5.29        68.81        19.53        17.75        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 
       55.40        37.02        44.38         0.10        16.67        39.52 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 
        7.33         1.97         0.59         2.04         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-69-7973 
       13.87         5.06         6.12        22.68         4.24         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        6.05         2.30         2.93        12.56         3.25         2.50 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4675 TCGA-73-4676 
        2.01        52.57        23.38        29.95         1.32         4.01 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
      163.10        27.16        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       38.50         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7220 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
      223.96        26.53        53.33        28.96        10.55        32.68 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 
       13.81         0.36         0.89         1.12         0.62         0.33 
TCGA-86-8074 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8585 TCGA-86-8668 
        0.79         0.85         0.76         0.69         1.12         1.45 
TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.56         1.28         1.22        41.33         0.03         1.28 
TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 
        1.15        26.93         4.18         1.02         9.76         4.18 
TCGA-93-8067 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        6.08         0.69         1.32        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 
       43.76         8.65         5.95         0.59         0.72         5.95 
TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        5.36         4.80         0.49         8.22        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AE TCGA-J2-A4AG 
        1.45         5.56         5.03         3.72         9.27         7.82 
TCGA-L4-A4E6 
        2.50 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              0.07               0.03 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             88.11             223.96 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            12.935              7.360 
[1] "0.1 - 88.1 (12.9)" "0.0 - 224.0 (7.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-L4-A4E6 
"19P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-L4-A4E6 
"19P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-L4-A4E6 
"19P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D74V2, continuous
D74V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED     46   52
  19P LOSS WILD-TYPE  157  115
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  FEMALE               46                157
  MALE                 52                115
D74V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  19P LOSS MUTATED                            2
  19P LOSS WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  19P LOSS MUTATED                                  25
  19P LOSS WILD-TYPE                                53
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19P LOSS MUTATED                                                   57
  19P LOSS WILD-TYPE                                                171
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  19P LOSS MUTATED                                            0
  19P LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  19P LOSS MUTATED                                               6
  19P LOSS WILD-TYPE                                            10
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  19P LOSS MUTATED                                0
  19P LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  19P LOSS MUTATED                                    1
  19P LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  19P LOSS MUTATED                              1                             3
  19P LOSS WILD-TYPE                            1                            13
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  19P LOSS MUTATED                                               1
  19P LOSS WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  19P LOSS MUTATED                                   2
  19P LOSS WILD-TYPE                                 5
D74V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  19P LOSS MUTATED    23  61   7   7
  19P LOSS WILD-TYPE  90 147  23  10
D74V6, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  T1               23                 90
  T2               61                147
  T3                7                 23
  T4                7                 10
                    vv
clus                  N0  N1 N2+N3
  19P LOSS MUTATED    63  24     9
  19P LOSS WILD-TYPE 169  47    49
D74V7, multiclass
       clus
vv      19P LOSS MUTATED 19P LOSS WILD-TYPE
  N0                  63                169
  N1                  24                 47
  N2+N3                9                 49
                    vv
clus                  M0  M1 M1B  MX
  19P LOSS MUTATED    69   7   2  18
  19P LOSS WILD-TYPE 178  10   1  77
D74V8, multiclass
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  M0                69                178
  M1                 7                 10
  M1B                2                  1
  MX                18                 77
                    vv
clus                   I  II III  IV
  19P LOSS MUTATED    50  26  14   8
  19P LOSS WILD-TYPE 148  55  51  12
D74V9, multiclass
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  I                 50                148
  II                26                 55
  III               14                 51
  IV                 8                 12
D74V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      5   93
  19P LOSS WILD-TYPE   15  257
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO                 5                 15
  YES               93                257
D74V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  19P LOSS MUTATED                                            28
  19P LOSS WILD-TYPE                                          97
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  19P LOSS MUTATED                                       29             28
  19P LOSS WILD-TYPE                                     65             56
                    vv
clus                 LIFELONG NON-SMOKER
  19P LOSS MUTATED                     9
  19P LOSS WILD-TYPE                  45
D74V12, multiclass
                                             clus
vv                                            19P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               28
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    29
  CURRENT SMOKER                                            28
  LIFELONG NON-SMOKER                                        9
                                             clus
vv                                            19P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 97
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      65
  CURRENT SMOKER                                              56
  LIFELONG NON-SMOKER                                         45
D74V13, continuous
                    vv
clus                  R0  R1  R2  RX
  19P LOSS MUTATED    63   1   3   2
  19P LOSS WILD-TYPE 155   8   1  11
D74V14, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  R0               63                155
  R1                1                  8
  R2                3                  1
  RX                2                 11

Clustering(75) Variable = 19q loss mutation analysis
D75V1, survival
                    sevent
clus2                  0   1
  19Q LOSS MUTATED    27  21
  19Q LOSS WILD-TYPE 219  64
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                48                283 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                21                 64 
$`19Q LOSS MUTATED`
TCGA-05-4250 TCGA-05-4396 TCGA-05-4402 TCGA-05-4415 TCGA-05-4420 TCGA-05-4434 
        3.98         9.96         8.02         2.96        29.95        15.02 
TCGA-38-4630 TCGA-44-2655 TCGA-44-5644 TCGA-44-6779 TCGA-44-7671 TCGA-44-8117 
       35.28        18.87        16.37        16.41        17.59         8.52 
TCGA-49-4486 TCGA-49-4505 TCGA-49-4507 TCGA-49-6742 TCGA-50-5051 TCGA-50-5932 
       76.21        14.07         8.81        15.02        14.96        35.87 
TCGA-50-5944 TCGA-50-6597 TCGA-55-1592 TCGA-55-1596 TCGA-55-5899 TCGA-55-6968 
       12.26        33.37        23.05        45.17         2.86        42.48 
TCGA-55-6972 TCGA-55-6975 TCGA-62-A46O TCGA-62-A470 TCGA-64-1676 TCGA-67-3770 
       48.49         3.88        47.77        39.22        56.81         0.99 
TCGA-69-8255 TCGA-73-4666 TCGA-73-4670 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
        4.21        20.28         0.46         1.25        20.42        17.06 
TCGA-78-7146 TCGA-78-7149 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-91-6836 
        5.65        35.93        88.11        31.20         8.02         0.36 
TCGA-91-6849 TCGA-95-7039 TCGA-95-7567 TCGA-95-7948 TCGA-J2-A4AD TCGA-L4-A4E5 
        0.92         1.12         5.36         4.34         9.44         6.97 

$`19Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 
       38.07        19.92        14.01        37.02        24.03        47.05 
TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 
       20.05        14.93         8.98        30.02        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        25.02        24.00         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 
       47.61        85.32        37.71        49.02        28.37        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2656 TCGA-44-2657 
       44.61         5.19        26.30         4.37        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
        6.84         0.30         3.35         9.93         7.76         3.12 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 
        5.42         2.70        63.72        32.45        36.49         9.80 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
        5.33         5.03         1.64        18.31        18.87        17.46 
TCGA-44-7672 TCGA-44-8119 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       13.74         3.22        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 
       46.72        32.84        29.46        29.75        43.20        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.99         4.93         0.03        20.48        71.47        48.82 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81         9.76        49.28         8.05         9.27         8.78 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12         9.37         4.44 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
        6.21         0.72         8.38        35.11        31.89        13.74 
TCGA-55-1594 TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 
       38.73        48.62         0.07        32.61         0.79        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       15.25         0.92         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.02         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        6.48         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.85         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 
        0.30         0.10         4.80         6.97         0.49         1.58 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.61         2.14         3.45         1.08         1.02         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 
        1.58         0.03         0.92         0.16         5.29        68.81 
TCGA-62-A46P TCGA-62-A472 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
       19.53        17.75        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       44.38        83.84         0.10        30.44        16.67        39.52 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        7.33         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.69        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
        4.24         7.56         6.05         2.30         2.93        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        3.25         2.50         2.01        52.57        23.38        29.95 
TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 
       15.35         1.32         4.01       163.10        27.16        19.27 
TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       20.58        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
      223.96         8.48        26.53        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        32.68        13.81         0.36         0.89         0.23 
TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
        1.12         0.62         0.33         0.79         1.41         0.85 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 
        0.76         0.69         0.53         1.12         1.45         0.56 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6847 TCGA-91-6848 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
       26.93         4.18         1.02         9.76         4.18         6.08 
TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.07         0.69         1.32        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 
       43.76         8.65         5.95         0.59         0.72         5.95 
TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        5.36         4.80         0.49         8.22        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AE TCGA-J2-A4AG 
        1.45         5.56         5.03         3.72         9.27         7.82 
TCGA-L4-A4E6 
        2.50 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              0.36               0.03 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             88.11             223.96 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             14.99               7.82 
[1] "0.4 - 88.1 (15.0)" "0.0 - 224.0 (7.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-L4-A4E6 
"19Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-L4-A4E6 
"19Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-L4-A4E6 
"19Q LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D75V2, continuous
D75V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED     30   26
  19Q LOSS WILD-TYPE  173  141
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  FEMALE               30                173
  MALE                 26                141
D75V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  19Q LOSS MUTATED                            2
  19Q LOSS WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  19Q LOSS MUTATED                                  14
  19Q LOSS WILD-TYPE                                64
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19Q LOSS MUTATED                                                   32
  19Q LOSS WILD-TYPE                                                196
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  19Q LOSS MUTATED                                            0
  19Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  19Q LOSS MUTATED                                               2
  19Q LOSS WILD-TYPE                                            14
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  19Q LOSS MUTATED                                0
  19Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  19Q LOSS MUTATED                                    0
  19Q LOSS WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  19Q LOSS MUTATED                              0                             3
  19Q LOSS WILD-TYPE                            2                            13
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  19Q LOSS MUTATED                                               2
  19Q LOSS WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  19Q LOSS MUTATED                                   1
  19Q LOSS WILD-TYPE                                 6
D75V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  19Q LOSS MUTATED    15  32   4   5
  19Q LOSS WILD-TYPE  98 176  26  12
D75V6, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  T1               15                 98
  T2               32                176
  T3                4                 26
  T4                5                 12
                    vv
clus                  N0  N1 N2+N3
  19Q LOSS MUTATED    36  13     6
  19Q LOSS WILD-TYPE 196  58    52
D75V7, multiclass
       clus
vv      19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  N0                  36                196
  N1                  13                 58
  N2+N3                6                 52
                    vv
clus                  M0  M1 M1B  MX
  19Q LOSS MUTATED    35   6   0  13
  19Q LOSS WILD-TYPE 212  11   3  82
D75V8, multiclass
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  M0                35                212
  M1                 6                 11
  M1B                0                  3
  MX                13                 82
                    vv
clus                   I  II III  IV
  19Q LOSS MUTATED    31  10  10   5
  19Q LOSS WILD-TYPE 167  71  55  15
D75V9, multiclass
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  I                 31                167
  II                10                 71
  III               10                 55
  IV                 5                 15
D75V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      4   52
  19Q LOSS WILD-TYPE   16  298
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO                 4                 16
  YES               52                298
D75V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  19Q LOSS MUTATED                                            18
  19Q LOSS WILD-TYPE                                         107
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  19Q LOSS MUTATED                                       13             18
  19Q LOSS WILD-TYPE                                     81             66
                    vv
clus                 LIFELONG NON-SMOKER
  19Q LOSS MUTATED                     5
  19Q LOSS WILD-TYPE                  49
D75V12, multiclass
                                             clus
vv                                            19Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               18
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    13
  CURRENT SMOKER                                            18
  LIFELONG NON-SMOKER                                        5
                                             clus
vv                                            19Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                107
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      81
  CURRENT SMOKER                                              66
  LIFELONG NON-SMOKER                                         49
D75V13, continuous
                    vv
clus                  R0  R1  R2  RX
  19Q LOSS MUTATED    33   1   3   1
  19Q LOSS WILD-TYPE 185   8   1  12
D75V14, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  R0               33                185
  R1                1                  8
  R2                3                  1
  RX                1                 12

Clustering(76) Variable = 20p loss mutation analysis
D76V1, survival
                    sevent
clus2                  0   1
  20P LOSS MUTATED    25  14
  20P LOSS WILD-TYPE 221  71
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                39                292 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                14                 71 
$`20P LOSS MUTATED`
TCGA-05-4405 TCGA-05-4415 TCGA-05-5423 TCGA-44-2665 TCGA-44-6779 TCGA-49-4505 
       20.05         2.96         4.96        13.15        16.41        14.07 
TCGA-50-5051 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 TCGA-50-5944 TCGA-50-6594 
       14.96        77.88         8.45        15.12        12.26        12.16 
TCGA-50-6597 TCGA-53-7624 TCGA-55-1594 TCGA-55-6968 TCGA-55-6984 TCGA-55-7725 
       33.37        35.11        38.73        42.48        24.99         1.28 
TCGA-55-7903 TCGA-55-7907 TCGA-55-8092 TCGA-55-8616 TCGA-62-A46O TCGA-62-A46P 
        0.62         0.53         0.85         1.58        47.77        19.53 
TCGA-62-A472 TCGA-64-1678 TCGA-64-5781 TCGA-67-3773 TCGA-67-6216 TCGA-69-7761 
       17.75        39.09        39.52         2.04         0.69         6.12 
TCGA-73-4666 TCGA-73-4670 TCGA-73-7499 TCGA-78-7145 TCGA-78-7146 TCGA-78-7535 
       20.28         0.46        17.06        27.16         5.65        31.20 
TCGA-86-7953 TCGA-91-6828 TCGA-91-6848 
        1.12         1.22         4.18 

$`20P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       24.03        47.05         8.02        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02         1.02         2.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        47.61        85.32        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
        3.39        15.78         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        6.44         6.21         4.60         3.48        16.37         6.84 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
        0.30         3.35         9.93         7.76         3.12         5.42 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 
        2.70        63.72        32.45        36.49         9.80         5.33 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
        5.03         1.64        18.31        18.87        17.46        17.59 
TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       13.74         8.52         3.22        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        46.72        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.75        43.20        15.02        12.13        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
        0.03        20.48        71.47        48.82        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       49.28         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        9.37         4.44        11.47        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 
       11.05         6.21         0.72         8.38        31.89        13.74 
TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
        0.79        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        3.12         1.32         1.02         1.02         0.79         1.78 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        6.48         0.69         0.10         0.69         3.02         0.20 
TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 
        0.13         0.49         7.07         1.41         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8619 TCGA-55-8620 
        0.10         4.80         6.97         0.49         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A470 TCGA-64-1676 
        0.92         0.16         5.29        68.81        39.22        56.81 
TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       20.65        55.40        37.02        44.38        83.84         0.10 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       30.44        16.67         7.33         0.99         1.97         0.59 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 TCGA-69-7760 TCGA-69-7763 TCGA-69-7764 
        0.59         0.89        13.87         5.06        22.68        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
        4.24         7.56         6.05         2.30         2.93        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        3.25         2.50         4.21         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 
       29.95        15.35         1.32         4.01         1.25        20.42 
TCGA-78-7143 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
      163.10        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       26.53         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-8054 
       32.68        13.81         0.36         0.89         0.23         0.62 
TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        0.33         0.79         1.41         0.85         0.76         0.69 
TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6829 
        0.53         1.12         1.45         0.56         1.28        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6849 
        0.03         1.28         1.15         0.36        26.93         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        1.02         9.76         4.18         6.08         1.12         0.07 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 
        5.36         0.69         1.32         4.34        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 
        5.95         5.36         4.80         0.49         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        9.27         7.82         6.97         2.50 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              0.46               0.03 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             77.88             223.96 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
            14.070              8.155 
[1] "0.5 - 77.9 (14.1)" "0.0 - 224.0 (8.2)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"20P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"20P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"20P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D76V2, continuous
D76V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED     26   24
  20P LOSS WILD-TYPE  177  143
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  FEMALE               26                177
  MALE                 24                143
D76V4, continuous
[1] "Remove cluster labels:" "20P LOSS MUTATED"      
clus
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 2                 26 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7910 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-64-1677         TCGA-64-1681 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5778         TCGA-69-7974         TCGA-71-6725 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4659         TCGA-73-4662         TCGA-73-4668 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4676         TCGA-75-5122         TCGA-83-5908 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-7701         TCGA-86-7711         TCGA-86-7713 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-7714         TCGA-86-7954         TCGA-91-6849 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-93-7348         TCGA-99-7458 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  20P LOSS MUTATED                            2
  20P LOSS WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  20P LOSS MUTATED                                  12
  20P LOSS WILD-TYPE                                66
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20P LOSS MUTATED                                                   32
  20P LOSS WILD-TYPE                                                196
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  20P LOSS MUTATED                                            0
  20P LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  20P LOSS MUTATED                                               1
  20P LOSS WILD-TYPE                                            15
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  20P LOSS MUTATED                                0
  20P LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  20P LOSS MUTATED                                    1
  20P LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  20P LOSS MUTATED                              0                             0
  20P LOSS WILD-TYPE                            2                            16
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  20P LOSS MUTATED                                               1
  20P LOSS WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  20P LOSS MUTATED                                   1
  20P LOSS WILD-TYPE                                 6
D76V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  20P LOSS MUTATED    10  33   3   4
  20P LOSS WILD-TYPE 103 175  27  13
D76V6, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  T1               10                103
  T2               33                175
  T3                3                 27
  T4                4                 13
                    vv
clus                  N0  N1 N2+N3
  20P LOSS MUTATED    27  12    11
  20P LOSS WILD-TYPE 205  59    47
D76V7, multiclass
       clus
vv      20P LOSS MUTATED 20P LOSS WILD-TYPE
  N0                  27                205
  N1                  12                 59
  N2+N3               11                 47
                    vv
clus                  M0  M1 M1B  MX
  20P LOSS MUTATED    34   5   0  11
  20P LOSS WILD-TYPE 213  12   3  84
D76V8, multiclass
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  M0                34                213
  M1                 5                 12
  M1B                0                  3
  MX                11                 84
                    vv
clus                   I  II III  IV
  20P LOSS MUTATED    21  14  11   4
  20P LOSS WILD-TYPE 177  67  54  16
D76V9, multiclass
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  I                 21                177
  II                14                 67
  III               11                 54
  IV                 4                 16
D76V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      3   47
  20P LOSS WILD-TYPE   17  303
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                 3                 17
  YES               47                303
D76V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  20P LOSS MUTATED                                            17
  20P LOSS WILD-TYPE                                         108
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  20P LOSS MUTATED                                       12              9
  20P LOSS WILD-TYPE                                     82             75
                    vv
clus                 LIFELONG NON-SMOKER
  20P LOSS MUTATED                     8
  20P LOSS WILD-TYPE                  46
D76V12, multiclass
                                             clus
vv                                            20P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               17
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    12
  CURRENT SMOKER                                             9
  LIFELONG NON-SMOKER                                        8
                                             clus
vv                                            20P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                108
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      82
  CURRENT SMOKER                                              75
  LIFELONG NON-SMOKER                                         46
D76V13, continuous
                    vv
clus                  R0  R1  R2  RX
  20P LOSS MUTATED    34   1   0   1
  20P LOSS WILD-TYPE 184   8   4  12
D76V14, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  R0               34                184
  R1                1                  8
  R2                0                  4
  RX                1                 12

Clustering(77) Variable = 20q loss mutation analysis
D77V1, survival
                    sevent
clus2                  0   1
  20Q LOSS MUTATED    11   6
  20Q LOSS WILD-TYPE 235  79
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                17                314 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 6                 79 
$`20Q LOSS MUTATED`
TCGA-05-4405 TCGA-05-4415 TCGA-50-5051 TCGA-50-5936 TCGA-53-7624 TCGA-55-8087 
       20.05         2.96        14.96         8.45        35.11         0.69 
TCGA-55-8097 TCGA-62-A46O TCGA-62-A46P TCGA-64-1678 TCGA-67-3773 TCGA-67-6216 
        0.49        47.77        19.53        39.09         2.04         0.69 
TCGA-73-4675 TCGA-78-7146 TCGA-78-7537 TCGA-86-7953 TCGA-91-6828 
        1.32         5.65        53.33         1.12         1.22 

$`20Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       24.03        47.05         8.02        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02         1.02         4.96         2.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        47.61        85.32 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       37.71        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
        5.19        26.30         4.37        18.87        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       17.39         3.39        15.78        13.15         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       10.22         8.32         6.44         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       16.37         6.84         0.30         3.35         9.93         7.76 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
        3.12         5.42         2.70        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        17.46        17.59        13.74         8.52         3.22 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 
        9.27         8.78        35.87        77.88        21.47        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
        9.37         4.44        12.26        11.47        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
        8.38        31.89        13.74        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        3.12         1.32         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8299 TCGA-55-8301 
        3.02         0.20         0.85         0.13         7.07         1.41 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 
        7.46         0.30         0.10         4.80         6.97         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        0.95         1.58         0.03         0.92         0.16         5.29 
TCGA-62-8399 TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 
       68.81        39.22        17.75        56.81        20.65        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        44.38        83.84         0.10        30.44        16.67 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 
       39.52         7.33         0.99         1.97         0.59         0.59 
TCGA-67-6215 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.89        13.87         5.06         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
        4.24         7.56         6.05         2.30         2.93        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        3.25         2.50         4.21         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 
       29.95        20.28        15.35         0.46         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 
       20.42        17.06       163.10        27.16        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      223.96         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 
       10.75        28.96        10.55        32.68        13.81         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 
        0.89         0.23         0.62         0.33         0.79         1.41 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 
        0.85         0.76         0.69         0.53         1.12         1.45 
TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.56         1.28        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 
        0.36        26.93         4.18         0.92         1.02         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 
        4.18         6.08         1.12         0.07         5.36         0.69 
TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        1.32         4.34        31.66        47.18        48.53        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 
        8.65         5.95         0.59         0.72         5.95         5.36 
TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        4.80         0.49         8.22        14.04        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
        5.56         5.03         3.72         9.44         9.27         7.82 
TCGA-L4-A4E5 TCGA-L4-A4E6 
        6.97         2.50 

  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              0.49               0.03 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             53.33             223.96 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             5.650              8.585 
[1] "0.5 - 53.3 (5.7)"  "0.0 - 224.0 (8.6)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "20Q LOSS MUTATED"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"20Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "20Q LOSS MUTATED"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"20Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
  "20Q LOSS MUTATED"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"20Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D77V2, continuous
D77V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED     12    9
  20Q LOSS WILD-TYPE  191  158
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  FEMALE               12                191
  MALE                  9                158
D77V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  20Q LOSS MUTATED                            0
  20Q LOSS WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  20Q LOSS MUTATED                                   7
  20Q LOSS WILD-TYPE                                71
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20Q LOSS MUTATED                                                   11
  20Q LOSS WILD-TYPE                                                217
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  20Q LOSS MUTATED                                            0
  20Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  20Q LOSS MUTATED                                               1
  20Q LOSS WILD-TYPE                                            15
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  20Q LOSS MUTATED                                0
  20Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  20Q LOSS MUTATED                                    1
  20Q LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  20Q LOSS MUTATED                              0                             0
  20Q LOSS WILD-TYPE                            2                            16
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  20Q LOSS MUTATED                                               0
  20Q LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  20Q LOSS MUTATED                                   1
  20Q LOSS WILD-TYPE                                 6
D77V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  20Q LOSS MUTATED     5  14   1   1
  20Q LOSS WILD-TYPE 108 194  29  16
D77V6, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  T1                5                108
  T2               14                194
  T3                1                 29
  T4                1                 16
                    vv
clus                  N0  N1 N2+N3
  20Q LOSS MUTATED    14   3     4
  20Q LOSS WILD-TYPE 218  68    54
D77V7, multiclass
       clus
vv      20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  N0                  14                218
  N1                   3                 68
  N2+N3                4                 54
                    vv
clus                  M0  M1 M1B  MX
  20Q LOSS MUTATED    17   1   0   3
  20Q LOSS WILD-TYPE 230  16   3  92
D77V8, multiclass
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  M0                17                230
  M1                 1                 16
  M1B                0                  3
  MX                 3                 92
                    vv
clus                   I  II III  IV
  20Q LOSS MUTATED    12   3   5   1
  20Q LOSS WILD-TYPE 186  78  60  19
D77V9, multiclass
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  I                 12                186
  II                 3                 78
  III                5                 60
  IV                 1                 19
D77V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      1   20
  20Q LOSS WILD-TYPE   19  330
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                 1                 19
  YES               20                330
D77V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  20Q LOSS MUTATED                                             8
  20Q LOSS WILD-TYPE                                         117
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  20Q LOSS MUTATED                                        6              2
  20Q LOSS WILD-TYPE                                     88             82
                    vv
clus                 LIFELONG NON-SMOKER
  20Q LOSS MUTATED                     4
  20Q LOSS WILD-TYPE                  50
D77V12, multiclass
                                             clus
vv                                            20Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                8
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     6
  CURRENT SMOKER                                             2
  LIFELONG NON-SMOKER                                        4
                                             clus
vv                                            20Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                117
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      88
  CURRENT SMOKER                                              82
  LIFELONG NON-SMOKER                                         50
D77V13, continuous
                    vv
clus                  R0  R1  R2  RX
  20Q LOSS MUTATED    16   0   0   2
  20Q LOSS WILD-TYPE 202   9   4  11
D77V14, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  R0               16                202
  R1                0                  9
  R2                0                  4
  RX                2                 11

Clustering(78) Variable = 21q loss mutation analysis
D78V1, survival
                    sevent
clus2                  0   1
  21Q LOSS MUTATED    32  14
  21Q LOSS WILD-TYPE 214  71
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                46                285 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                14                 71 
$`21Q LOSS MUTATED`
TCGA-05-4396 TCGA-05-4417 TCGA-05-4420 TCGA-05-4432 TCGA-44-5643 TCGA-44-5644 
        9.96        14.93        29.95        25.02         3.48        16.37 
TCGA-44-6779 TCGA-44-7660 TCGA-50-5051 TCGA-50-5932 TCGA-50-5935 TCGA-50-5944 
       16.41         5.33        14.96        35.87        21.47        12.26 
TCGA-50-7109 TCGA-55-1592 TCGA-55-1594 TCGA-55-5899 TCGA-55-6968 TCGA-55-6972 
        8.38        23.05        38.73         2.86        42.48        48.49 
TCGA-55-7910 TCGA-55-8092 TCGA-55-8514 TCGA-55-A490 TCGA-62-A470 TCGA-64-1679 
        6.48         0.85         6.97         1.58        39.22        55.40 
TCGA-64-5774 TCGA-64-5775 TCGA-69-7760 TCGA-69-7980 TCGA-69-8255 TCGA-73-4659 
       83.84         0.10         5.06        12.56         4.21        23.38 
TCGA-73-4668 TCGA-73-4670 TCGA-78-7146 TCGA-78-7148 TCGA-78-7153 TCGA-78-7154 
       15.35         0.46         5.65        20.58        24.99        19.50 
TCGA-78-7167 TCGA-78-7536 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-91-7771 
       88.11         8.02         0.23         1.12         0.62         1.02 
TCGA-95-7043 TCGA-97-7547 TCGA-99-8025 TCGA-J2-A4AE 
        0.07        47.18        14.04         9.27 

$`21Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       38.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4424 
       47.05         8.02        20.05         2.96         8.98        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02         1.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96         2.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        47.61        85.32        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       28.37        35.28        11.64        44.61         5.19        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        4.37        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       15.78        13.15         3.19         8.09        10.22         8.32 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.44         6.21         4.60         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       32.45        36.49         9.80         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        17.46        17.59        13.74         8.52         3.22 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46        29.75        43.20 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        12.99         4.93         0.03        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        48.82        25.81         9.76        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        9.27         8.78        77.88         8.45        15.12         9.37 
TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
        4.44        11.47        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 
       12.16         6.21        33.37         0.72        35.11        31.89 
TCGA-53-7813 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       13.74        48.62        45.17         0.07        32.61         0.79 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       40.70        15.25         0.92         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        1.32         1.28         1.02         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 
        0.62         0.53         0.69         0.10         0.69         3.02 
TCGA-55-8090 TCGA-55-8094 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 
        0.20         0.13         0.49         7.07         1.41         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
        0.30         0.10         4.80         0.49         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 
        2.14         3.45         1.08         1.02         0.95         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
        0.92         0.16         5.29        68.81        47.77        19.53 
TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-1681 
       17.75        56.81        20.65        39.09        37.02        44.38 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       30.44        16.67        39.52         7.33         0.99         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 
        6.12        22.68        13.61         4.24         7.56         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-71-6725 TCGA-73-4658 
        2.30         2.93         3.25         2.50         2.01        52.57 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 
       29.95        20.28         1.32         4.01         1.25        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7149 TCGA-78-7150 
       17.06       163.10        27.16        19.27        35.93        21.86 
TCGA-78-7152 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       39.48        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7535 
        7.04       104.15       223.96         8.48        26.53        31.20 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
        0.36         0.89         0.33         0.79         1.41         0.85 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 
        0.76         0.69         0.53         1.12         1.45         0.56 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28         1.22        41.33         0.03         1.28         1.15 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 
        0.36        26.93         4.18         0.92         9.76         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
        6.08         1.12         5.36         0.69         1.32         4.34 
TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       31.66        48.53        43.76         8.65         5.95         0.59 
TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 
        0.72         5.95         5.36         4.80         0.49         8.22 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        7.82         6.97         2.50 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              0.07               0.03 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             88.11             223.96 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             13.30               8.09 
[1] "0.1 - 88.1 (13.3)" "0.0 - 224.0 (8.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"21Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"21Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-L4-A4E6 
"21Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D78V2, continuous
D78V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     21   31
  21Q LOSS WILD-TYPE  182  136
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  FEMALE               21                182
  MALE                 31                136
D78V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  21Q LOSS MUTATED                            4
  21Q LOSS WILD-TYPE                          7
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  21Q LOSS MUTATED                                  11
  21Q LOSS WILD-TYPE                                67
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  21Q LOSS MUTATED                                                   31
  21Q LOSS WILD-TYPE                                                197
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  21Q LOSS MUTATED                                            0
  21Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  21Q LOSS MUTATED                                               1
  21Q LOSS WILD-TYPE                                            15
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  21Q LOSS MUTATED                                0
  21Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  21Q LOSS MUTATED                                    1
  21Q LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  21Q LOSS MUTATED                              0                             3
  21Q LOSS WILD-TYPE                            2                            13
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  21Q LOSS MUTATED                                               1
  21Q LOSS WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  21Q LOSS MUTATED                                   0
  21Q LOSS WILD-TYPE                                 7
D78V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  21Q LOSS MUTATED    14  29   5   4
  21Q LOSS WILD-TYPE  99 179  25  13
D78V6, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  T1               14                 99
  T2               29                179
  T3                5                 25
  T4                4                 13
                    vv
clus                  N0  N1 N2+N3
  21Q LOSS MUTATED    34   8    10
  21Q LOSS WILD-TYPE 198  63    48
D78V7, multiclass
       clus
vv      21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  N0                  34                198
  N1                   8                 63
  N2+N3               10                 48
                    vv
clus                  M0  M1 M1B  MX
  21Q LOSS MUTATED    36   3   0  12
  21Q LOSS WILD-TYPE 211  14   3  83
D78V8, multiclass
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  M0                36                211
  M1                 3                 14
  M1B                0                  3
  MX                12                 83
                    vv
clus                   I  II III  IV
  21Q LOSS MUTATED    27  10  13   2
  21Q LOSS WILD-TYPE 171  71  52  18
D78V9, multiclass
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  I                 27                171
  II                10                 71
  III               13                 52
  IV                 2                 18
D78V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      4   48
  21Q LOSS WILD-TYPE   16  302
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO                 4                 16
  YES               48                302
D78V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  21Q LOSS MUTATED                                            18
  21Q LOSS WILD-TYPE                                         107
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  21Q LOSS MUTATED                                        8             18
  21Q LOSS WILD-TYPE                                     86             66
                    vv
clus                 LIFELONG NON-SMOKER
  21Q LOSS MUTATED                     5
  21Q LOSS WILD-TYPE                  49
D78V12, multiclass
                                             clus
vv                                            21Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               18
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     8
  CURRENT SMOKER                                            18
  LIFELONG NON-SMOKER                                        5
                                             clus
vv                                            21Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                107
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      86
  CURRENT SMOKER                                              66
  LIFELONG NON-SMOKER                                         49
D78V13, continuous
                    vv
clus                  R0  R1  R2  RX
  21Q LOSS MUTATED    33   0   0   1
  21Q LOSS WILD-TYPE 185   9   4  12
D78V14, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  R0               33                185
  R1                0                  9
  R2                0                  4
  RX                1                 12

Clustering(79) Variable = 22q loss mutation analysis
D79V1, survival
                    sevent
clus2                  0   1
  22Q LOSS MUTATED    44  23
  22Q LOSS WILD-TYPE 202  62
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                67                264 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                23                 62 
$`22Q LOSS MUTATED`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4418 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 
        9.96        24.03         8.98        26.01        25.02        24.00 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4628 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        5.95         8.68        49.02         6.21         4.60         3.48 
TCGA-44-5644 TCGA-44-6778 TCGA-44-8117 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 
       16.37        36.49         8.52        46.72        14.07         8.81 
TCGA-49-4510 TCGA-50-5051 TCGA-50-5930 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
       29.46        14.96         9.27        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-6591 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       15.12         3.88        33.37         0.72         8.38        35.11 
TCGA-55-5899 TCGA-55-6968 TCGA-55-6972 TCGA-55-7903 TCGA-55-7910 TCGA-55-8094 
        2.86        42.48        48.49         0.62         6.48         0.13 
TCGA-55-8512 TCGA-55-A490 TCGA-62-A472 TCGA-64-1676 TCGA-64-1679 TCGA-64-1681 
        0.10         1.58        17.75        56.81        55.40        44.38 
TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-69-7760 TCGA-69-7764 TCGA-69-7979 
       83.84        30.44        16.67         5.06        13.61         2.93 
TCGA-69-8253 TCGA-73-4662 TCGA-73-4668 TCGA-73-4677 TCGA-78-7146 TCGA-78-7159 
        3.25        29.95        15.35         1.25         5.65        40.11 
TCGA-78-7163 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-86-7711 TCGA-86-7953 
      223.96        88.11        31.20         8.02         0.89         1.12 
TCGA-86-8054 TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 TCGA-95-7039 TCGA-95-7567 
        0.62        41.33         1.28         0.36         1.12         5.36 
TCGA-L4-A4E5 
        6.97 

$`22Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 
       38.07         3.98        19.92        14.01        37.02        47.05 
TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 
        8.02        20.05         2.96        14.93        29.95        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       26.01        25.02        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-38-4625 TCGA-38-4626 
        0.99         2.04         0.46         7.36        47.61        85.32 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        28.37        35.28        11.64        44.61         5.19 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        18.87        19.10        13.15        17.39 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
        3.39        15.78        13.15         3.19         8.09        10.22 
TCGA-44-3398 TCGA-44-3918 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
        8.32         6.44         6.84         0.30         3.35         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        7.76         3.12         5.42         2.70        63.72        32.45 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41         9.80         5.33         5.03         1.64        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8119 TCGA-49-4486 
       18.87        17.46        17.59        13.74         3.22        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4506 TCGA-49-4512 
       28.11        28.57        12.66        35.54        32.84        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        48.82        25.81         9.76        49.28 
TCGA-50-5072 TCGA-50-5931 TCGA-50-5933 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
        8.05         8.78        77.88         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       11.47        42.31        25.51        11.05        12.16         6.21 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       31.89        13.74        23.05        38.73        48.62        45.17 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
        0.07        32.61         0.79        40.70        15.25         0.92 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 
        1.02         0.79         1.78         0.53         0.69         0.10 
TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8097 TCGA-55-8299 
        0.69         3.02         0.20         0.85         0.49         7.07 
TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 
        1.41         7.46         0.30         4.80         6.97         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8399 
        0.95         0.03         0.92         0.16         5.29        68.81 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       47.77        19.53        39.22        20.65        39.09        37.02 
TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
        0.10        39.52         7.33         0.99         1.97         0.59 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 
        2.04         0.59         0.89         0.69        13.87         6.12 
TCGA-69-7763 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 
       22.68         4.24         7.56         6.05         2.30        12.56 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 
        2.50         4.21         2.01        52.57        23.38        20.28 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        0.46         1.32         4.01        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
       27.16        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 
       24.99        19.50        38.50        32.09         5.88        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 
        7.04       104.15         8.48        26.53        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 TCGA-86-7701 TCGA-86-7713 
       28.96        10.55        32.68        13.81         0.36         0.23 
TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        0.33         0.79         1.41         0.85         0.76         0.69 
TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 
        0.53         1.12         1.45         0.56         1.28         1.22 
TCGA-91-6830 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        0.03         1.15        26.93         4.18         0.92         1.02 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 
        9.76         4.18         6.08         0.07         0.69         1.32 
TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        4.34        31.66        47.18        48.53        43.76         8.65 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 
        5.95         0.59         0.72         5.95         5.36         4.80 
TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        0.49         8.22        14.04        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 
        5.03         3.72         9.44         9.27         7.82         2.50 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              0.10               0.03 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            223.96             163.10 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              9.96               7.92 
[1] "0.1 - 224.0 (10.0)" "0.0 - 163.1 (7.9)" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-L4-A4E6 
"22Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-L4-A4E6 
"22Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4390         TCGA-05-4396 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-05-4397         TCGA-05-4398         TCGA-05-4402 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4405         TCGA-05-4415         TCGA-05-4417 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4418         TCGA-05-4420         TCGA-05-4424 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4426         TCGA-05-4427         TCGA-05-4430 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-05-4432         TCGA-05-4433         TCGA-05-4434 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-05-5420         TCGA-05-5423         TCGA-05-5425 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-5429         TCGA-05-5715         TCGA-35-3615 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-35-4122         TCGA-35-4123         TCGA-35-5375 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-38-4625         TCGA-38-4626         TCGA-38-4627 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-38-4628         TCGA-38-4629         TCGA-38-4630 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-38-4631         TCGA-38-4632         TCGA-38-6178 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-38-7271         TCGA-38-A44F         TCGA-44-2655 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3396 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-3398         TCGA-44-3918         TCGA-44-3919 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-44-4112         TCGA-44-5643         TCGA-44-5644 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-44-5645         TCGA-44-6144         TCGA-44-6145 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-6146         TCGA-44-6147         TCGA-44-6148 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-6774         TCGA-44-6775         TCGA-44-6776 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-6777         TCGA-44-6778         TCGA-44-6779 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-44-7659         TCGA-44-7660         TCGA-44-7661 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-7662         TCGA-44-7667         TCGA-44-7669 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-7670         TCGA-44-7671         TCGA-44-7672 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-8117         TCGA-44-8119         TCGA-49-4486 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-4487         TCGA-49-4488         TCGA-49-4490 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-4494         TCGA-49-4501         TCGA-49-4505 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-49-4506         TCGA-49-4507         TCGA-49-4510 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-49-4512         TCGA-49-4514         TCGA-49-6742 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-6743         TCGA-49-6744         TCGA-49-6745 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-6761         TCGA-50-5044         TCGA-50-5045 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5049         TCGA-50-5051         TCGA-50-5055 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-50-5066         TCGA-50-5068         TCGA-50-5072 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5930         TCGA-50-5931         TCGA-50-5932 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-50-5933         TCGA-50-5935         TCGA-50-5936 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-50-5939         TCGA-50-5941         TCGA-50-5942 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5944         TCGA-50-5946         TCGA-50-6590 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-6591         TCGA-50-6592         TCGA-50-6593 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-6594         TCGA-50-6595         TCGA-50-6597 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-50-6673         TCGA-50-7109         TCGA-53-7624 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-53-7626         TCGA-53-7813         TCGA-55-1592 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-5899         TCGA-55-6543         TCGA-55-6642 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6712         TCGA-55-6968         TCGA-55-6969 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-55-6970         TCGA-55-6971         TCGA-55-6972 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-55-6975         TCGA-55-6978         TCGA-55-6979 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6980         TCGA-55-6981         TCGA-55-6982 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6983         TCGA-55-6984         TCGA-55-6985 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-6986         TCGA-55-6987         TCGA-55-7281 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-7283         TCGA-55-7573         TCGA-55-7574 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-7576         TCGA-55-7725         TCGA-55-7726 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-7727         TCGA-55-7728         TCGA-55-7815 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-7903         TCGA-55-7907         TCGA-55-7910 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-55-7911         TCGA-55-7914         TCGA-55-8087 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-8089         TCGA-55-8090         TCGA-55-8092 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8097         TCGA-55-8299 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8510         TCGA-55-8511 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-A4DG         TCGA-62-8399         TCGA-62-A46O 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A470         TCGA-62-A472 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-64-1679         TCGA-64-1680         TCGA-64-1681 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-64-5774         TCGA-64-5775         TCGA-64-5778 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-64-5779         TCGA-64-5781         TCGA-64-5815 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-67-3770         TCGA-67-3771         TCGA-67-3772 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-67-3773         TCGA-67-3774         TCGA-67-6215 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-67-6216         TCGA-67-6217         TCGA-69-7760 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-69-7761         TCGA-69-7763         TCGA-69-7764 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-69-7765         TCGA-69-7973         TCGA-69-7974 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-69-7978         TCGA-69-7979         TCGA-69-7980 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-69-8253         TCGA-69-8254         TCGA-69-8255 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-83-5908         TCGA-86-7701 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-86-8054         TCGA-86-8055         TCGA-86-8074 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-86-8075         TCGA-86-8076         TCGA-86-8278 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-86-8279         TCGA-86-8280         TCGA-86-8585 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-86-8668         TCGA-86-8671         TCGA-86-A4P8 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-91-6828         TCGA-91-6829         TCGA-91-6830 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-91-6831         TCGA-91-6835         TCGA-91-6836 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-93-7347         TCGA-93-7348 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-93-8067         TCGA-95-7039         TCGA-95-7043 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-95-7567         TCGA-95-7944         TCGA-95-7947 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-95-7948         TCGA-97-7546         TCGA-97-7547 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-8172         TCGA-97-8174         TCGA-97-8177 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-8179         TCGA-99-7458         TCGA-99-8025 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-99-8028         TCGA-99-8032         TCGA-99-8033 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-J2-8192         TCGA-J2-8194         TCGA-J2-A4AD 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-J2-A4AE         TCGA-J2-A4AG         TCGA-L4-A4E5 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-L4-A4E6 
"22Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D79V2, continuous
D79V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     35   42
  22Q LOSS WILD-TYPE  168  125
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  FEMALE               35                168
  MALE                 42                125
D79V4, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  22Q LOSS MUTATED                            4
  22Q LOSS WILD-TYPE                          7
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  22Q LOSS MUTATED                                  16
  22Q LOSS WILD-TYPE                                62
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  22Q LOSS MUTATED                                                   47
  22Q LOSS WILD-TYPE                                                181
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  22Q LOSS MUTATED                                            0
  22Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  22Q LOSS MUTATED                                               5
  22Q LOSS WILD-TYPE                                            11
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  22Q LOSS MUTATED                                0
  22Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  22Q LOSS MUTATED                                    1
  22Q LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  22Q LOSS MUTATED                              0                             2
  22Q LOSS WILD-TYPE                            2                            14
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  22Q LOSS MUTATED                                               1
  22Q LOSS WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) ADENOCARCINOMA
  22Q LOSS MUTATED                                   1
  22Q LOSS WILD-TYPE                                 6
D79V5, multiclass
                    vv
clus                  T1  T2  T3  T4
  22Q LOSS MUTATED    22  46   6   3
  22Q LOSS WILD-TYPE  91 162  24  14
D79V6, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  T1               22                 91
  T2               46                162
  T3                6                 24
  T4                3                 14
                    vv
clus                  N0  N1 N2+N3
  22Q LOSS MUTATED    47  17    12
  22Q LOSS WILD-TYPE 185  54    46
D79V7, multiclass
       clus
vv      22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  N0                  47                185
  N1                  17                 54
  N2+N3               12                 46
                    vv
clus                  M0  M1 M1B  MX
  22Q LOSS MUTATED    58   4   2  12
  22Q LOSS WILD-TYPE 189  13   1  83
D79V8, multiclass
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  M0                58                189
  M1                 4                 13
  M1B                2                  1
  MX                12                 83
                    vv
clus                   I  II III  IV
  22Q LOSS MUTATED    40  17  15   5
  22Q LOSS WILD-TYPE 158  64  50  15
D79V9, multiclass
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  I                 40                158
  II                17                 64
  III               15                 50
  IV                 5                 15
D79V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      7   70
  22Q LOSS WILD-TYPE   13  280
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO                 7                 13
  YES               70                280
D79V11, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  22Q LOSS MUTATED                                            23
  22Q LOSS WILD-TYPE                                         102
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  22Q LOSS MUTATED                                       13             28
  22Q LOSS WILD-TYPE                                     81             56
                    vv
clus                 LIFELONG NON-SMOKER
  22Q LOSS MUTATED                     9
  22Q LOSS WILD-TYPE                  45
D79V12, multiclass
                                             clus
vv                                            22Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               23
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    13
  CURRENT SMOKER                                            28
  LIFELONG NON-SMOKER                                        9
                                             clus
vv                                            22Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                102
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      81
  CURRENT SMOKER                                              56
  LIFELONG NON-SMOKER                                         45
D79V13, continuous
                    vv
clus                  R0  R1  R2  RX
  22Q LOSS MUTATED    50   0   0   1
  22Q LOSS WILD-TYPE 168   9   4  12
D79V14, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  R0               50                168
  R1                0                  9
  R2                0                  4
  RX                1                 12

Clustering(80) Variable = Xq loss mutation analysis
D80V1, survival
                   sevent
clus2                 0   1
  XQ LOSS MUTATED     6   3
  XQ LOSS WILD-TYPE 240  82
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                9               322 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                3                82 
$`XQ LOSS MUTATED`
TCGA-49-4507 TCGA-50-7109 TCGA-55-1592 TCGA-55-1595 TCGA-55-8090 TCGA-55-A4DG 
        8.81         8.38        23.05        48.62         0.20         5.29 
TCGA-69-7764 TCGA-78-7536 TCGA-86-8054 
       13.61         8.02         0.62 

$`XQ LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 
       38.07         3.98        19.92        14.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        29.95        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02         1.02         4.96         2.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       47.61        85.32        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61         5.19        26.30         4.37        18.87 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       19.10        13.15        17.39         3.39        15.78        13.15 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        10.22         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        4.60         3.48        16.37         6.84         0.30         3.35 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93         7.76         3.12         5.42         2.70        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       32.45        36.49        16.41         9.80         5.33         5.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        1.64        18.31        18.87        17.46        17.59        13.74 
TCGA-44-8117 TCGA-44-8119 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        8.52         3.22        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 
       35.54        46.72        14.07        32.84        29.46        29.75 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       43.20        15.02        12.13        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        48.82        14.96        25.81         9.76 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12         9.37         4.44        12.26 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
       11.47        42.31         3.88        25.51        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
        6.21        33.37         0.72        35.11        31.89        13.74 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.13         3.12         1.32         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 
        0.10         0.69         3.02         0.85         0.13         0.49 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        7.07         1.41         7.46         0.30         0.10         4.80 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        6.97         0.49         1.58         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        1.08         1.02         0.95         1.58         0.03         0.92 
TCGA-55-A494 TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A470 TCGA-62-A472 
        0.16        68.81        47.77        19.53        39.22        17.75 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
       56.81        20.65        39.09        55.40        37.02        44.38 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       83.84         0.10        30.44        16.67        39.52         7.33 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99         1.97         0.59         2.04         0.59         0.89 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 
        0.69        13.87         5.06         6.12        22.68         4.24 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 
        7.56         6.05         2.30         2.93        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       20.28        15.35         0.46         1.32         4.01         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
       20.42        17.06       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
      104.15       223.96         8.48        88.11        26.53        31.20 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-83-5908 
       53.33        10.75        28.96        10.55        32.68        13.81 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8055 TCGA-86-8074 
        0.36         0.89         0.23         1.12         0.33         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 
        1.41         0.85         0.76         0.69         0.53         1.12 
TCGA-86-8668 TCGA-86-8671 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        1.45         0.56         1.28         1.22        41.33         0.03 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.28         1.15         0.36        26.93         4.18         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        1.02         9.76         4.18         6.08         1.12         0.07 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 
        5.36         0.69         1.32         4.34        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-99-7458 TCGA-99-8025 
        5.95         5.36         4.80         0.49         8.22        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        9.27         7.82         6.97         2.50 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             0.20              0.03 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            48.62            223.96 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             8.38              8.50 
[1] "0.2 - 48.6 (8.4)"  "0.0 - 224.0 (8.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4390        TCGA-05-4396        TCGA-05-4397        TCGA-05-4398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4402        TCGA-05-4405        TCGA-05-4415        TCGA-05-4417 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4418        TCGA-05-4420        TCGA-05-4424        TCGA-05-4426 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-5429        TCGA-05-5715        TCGA-35-3615        TCGA-35-4122 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-35-4123        TCGA-35-5375        TCGA-38-4625        TCGA-38-4626 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4627        TCGA-38-4628        TCGA-38-4629        TCGA-38-4630 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4631        TCGA-38-4632        TCGA-38-6178        TCGA-38-7271 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656        TCGA-44-2657 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3396        TCGA-44-3398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-44-5643 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-5644        TCGA-44-5645        TCGA-44-6144        TCGA-44-6145 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6146        TCGA-44-6147        TCGA-44-6148        TCGA-44-6774 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6775        TCGA-44-6776        TCGA-44-6777        TCGA-44-6778 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6779        TCGA-44-7659        TCGA-44-7660        TCGA-44-7661 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7662        TCGA-44-7667        TCGA-44-7669        TCGA-44-7670 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7671        TCGA-44-7672        TCGA-44-8117        TCGA-44-8119 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4486        TCGA-49-4487        TCGA-49-4488        TCGA-49-4490 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4494        TCGA-49-4501        TCGA-49-4505        TCGA-49-4506 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4507        TCGA-49-4510        TCGA-49-4512        TCGA-49-4514 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-6742        TCGA-49-6743        TCGA-49-6744        TCGA-49-6745 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-6761        TCGA-50-5044        TCGA-50-5045        TCGA-50-5049 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5051        TCGA-50-5055        TCGA-50-5066        TCGA-50-5068 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5072        TCGA-50-5930        TCGA-50-5931        TCGA-50-5932 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5933        TCGA-50-5935        TCGA-50-5936        TCGA-50-5939 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5941        TCGA-50-5942        TCGA-50-5944        TCGA-50-5946 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6590        TCGA-50-6591        TCGA-50-6592        TCGA-50-6593 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6594        TCGA-50-6595        TCGA-50-6597        TCGA-50-6673 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-7109        TCGA-53-7624        TCGA-53-7626        TCGA-53-7813 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-1592        TCGA-55-1594        TCGA-55-1595        TCGA-55-1596 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-55-5899        TCGA-55-6543        TCGA-55-6642        TCGA-55-6712 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6968        TCGA-55-6969        TCGA-55-6970        TCGA-55-6971 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6972        TCGA-55-6975        TCGA-55-6978        TCGA-55-6979 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6980        TCGA-55-6981        TCGA-55-6982        TCGA-55-6983 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6984        TCGA-55-6985        TCGA-55-6986        TCGA-55-6987 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7281        TCGA-55-7283        TCGA-55-7573        TCGA-55-7574 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7576        TCGA-55-7725        TCGA-55-7726        TCGA-55-7727 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7728        TCGA-55-7815        TCGA-55-7903        TCGA-55-7907 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7910        TCGA-55-7911        TCGA-55-7914        TCGA-55-8087 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8089        TCGA-55-8090        TCGA-55-8092        TCGA-55-8094 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8097        TCGA-55-8299        TCGA-55-8301        TCGA-55-8510 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-A4DG        TCGA-62-8399        TCGA-62-A46O        TCGA-62-A46P 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-62-A470        TCGA-62-A472        TCGA-64-1676        TCGA-64-1677 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1679        TCGA-64-1680        TCGA-64-1681 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5774        TCGA-64-5775        TCGA-64-5778        TCGA-64-5779 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5781        TCGA-64-5815        TCGA-67-3770        TCGA-67-3771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774        TCGA-67-6215 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-6216        TCGA-67-6217        TCGA-69-7760        TCGA-69-7761 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-7763        TCGA-69-7764        TCGA-69-7765        TCGA-69-7973 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-7974        TCGA-69-7978        TCGA-69-7979        TCGA-69-7980 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-8253        TCGA-69-8254        TCGA-69-8255        TCGA-71-6725 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-83-5908 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-7701        TCGA-86-7711        TCGA-86-7713        TCGA-86-7953 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8054        TCGA-86-8055        TCGA-86-8074        TCGA-86-8075 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8585        TCGA-86-8668        TCGA-86-8671        TCGA-86-A4P8 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6828        TCGA-91-6829        TCGA-91-6830        TCGA-91-6831 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6835        TCGA-91-6836        TCGA-91-6847        TCGA-91-6848 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6849        TCGA-91-7771        TCGA-93-7347        TCGA-93-7348 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-93-8067        TCGA-95-7039        TCGA-95-7043        TCGA-95-7567 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-95-7944        TCGA-95-7947        TCGA-95-7948        TCGA-97-7546 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8172 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-8174        TCGA-97-8177        TCGA-97-8179        TCGA-99-7458 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D80V2, continuous
D80V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      2    8
  XQ LOSS WILD-TYPE  201  159
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  FEMALE               2               201
  MALE                 8               159
D80V4, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  XQ LOSS MUTATED                            1
  XQ LOSS WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  XQ LOSS MUTATED                                   1
  XQ LOSS WILD-TYPE                                77
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  XQ LOSS MUTATED                                                    7
  XQ LOSS WILD-TYPE                                                221
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  XQ LOSS MUTATED                                            0
  XQ LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  XQ LOSS MUTATED                                               0
  XQ LOSS WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  XQ LOSS MUTATED                                1
  XQ LOSS WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  XQ LOSS MUTATED                                    0
  XQ LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  XQ LOSS MUTATED                              0                             0
  XQ LOSS WILD-TYPE                            2                            16
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  XQ LOSS MUTATED                                               0
  XQ LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) ADENOCARCINOMA
  XQ LOSS MUTATED                                   0
  XQ LOSS WILD-TYPE                                 7
D80V5, multiclass
                   vv
clus                 T1  T2  T3  T4
  XQ LOSS MUTATED     6   2   1   1
  XQ LOSS WILD-TYPE 107 206  29  16
D80V6, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  T1               6               107
  T2               2               206
  T3               1                29
  T4               1                16
                   vv
clus                 N0  N1 N2+N3
  XQ LOSS MUTATED     6   2     1
  XQ LOSS WILD-TYPE 226  69    57
D80V7, multiclass
       clus
vv      XQ LOSS MUTATED XQ LOSS WILD-TYPE
  N0                  6               226
  N1                  2                69
  N2+N3               1                57
                   vv
clus                 M0  M1 M1B  MX
  XQ LOSS MUTATED     8   0   0   2
  XQ LOSS WILD-TYPE 239  17   3  93
D80V8, multiclass
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  M0                8               239
  M1                0                17
  M1B               0                 3
  MX                2                93
                   vv
clus                  I  II III  IV
  XQ LOSS MUTATED     7   0   3   0
  XQ LOSS WILD-TYPE 191  81  62  20
D80V9, multiclass
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  I                 7               191
  II                0                81
  III               3                62
  IV                0                20
D80V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      2    8
  XQ LOSS WILD-TYPE   18  342
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  NO                2                18
  YES               8               342
D80V11, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  XQ LOSS MUTATED                                             5
  XQ LOSS WILD-TYPE                                         120
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  XQ LOSS MUTATED                                        2              3
  XQ LOSS WILD-TYPE                                     92             81
                   vv
clus                LIFELONG NON-SMOKER
  XQ LOSS MUTATED                     0
  XQ LOSS WILD-TYPE                  54
D80V12, multiclass
                                             clus
vv                                            XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5               120
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                92
  CURRENT SMOKER                                            3                81
  LIFELONG NON-SMOKER                                       0                54
D80V13, continuous
                   vv
clus                 R0  R1  R2  RX
  XQ LOSS MUTATED     6   0   0   0
  XQ LOSS WILD-TYPE 212   9   4  13
D80V14, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  R0               6               212
  R1               0                 9
  R2               0                 4
  RX               0                13
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
                           "PATHOLOGY.T" 
                                      V7 
                           "PATHOLOGY.N" 
                                      V8 
                   "PATHOLOGICSPREAD(M)" 
                                      V9 
                           "TUMOR.STAGE" 
                                     V10 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V11 
                 "NUMBERPACKYEARSSMOKED" 
                                     V12 
        "TOBACCOSMOKINGHISTORYINDICATOR" 
                                     V13 
             "YEAROFTOBACCOSMOKINGONSET" 
                                     V14 
             "COMPLETENESS.OF.RESECTION" 
> q(save="no")
