
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/376097/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/LUAD-TP/2909298/1.GDAC_mergedClustering.Finished/LUAD-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LUAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LUAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=477, in cluster file=472, common to both=472
[1]  82 472
[1] "Amp Peak  1(1p34.3) mutation analysis"
[1] 3
  AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE 
                          125                           347 
  AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE 
                          125                           347 
[1] "Amp Peak  2(1p22.3) mutation analysis"
[1] 3
  AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE 
                          124                           348 
  AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE 
                          124                           348 
[1] "Amp Peak  3(1q21.3) mutation analysis"
[1] 3
  AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE 
                          336                           136 
  AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE 
                          336                           136 
[1] "Amp Peak  4(3q26.2) mutation analysis"
[1] 3
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                          157                           315 
  AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE 
                          157                           315 
[1] "Amp Peak  5(4q12) mutation analysis"
[1] 3
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         88                         384 
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         88                         384 
[1] "Amp Peak  6(5p15.33) mutation analysis"
[1] 3
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                           304                            168 
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                           304                            168 
[1] "Amp Peak  7(5p13.1) mutation analysis"
[1] 3
  AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE 
                          280                           192 
  AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE 
                          280                           192 
[1] "Amp Peak  8(5q35.1) mutation analysis"
[1] 3
  AMP PEAK  8(5Q35.1) MUTATED AMP PEAK  8(5Q35.1) WILD-TYPE 
                          110                           362 
  AMP PEAK  8(5Q35.1) MUTATED AMP PEAK  8(5Q35.1) WILD-TYPE 
                          110                           362 
[1] "Amp Peak  9(6p21.1) mutation analysis"
[1] 3
  AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE 
                          173                           299 
  AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE 
                          173                           299 
[1] "Amp Peak 10(7p21.1) mutation analysis"
[1] 3
  AMP PEAK 10(7P21.1) MUTATED AMP PEAK 10(7P21.1) WILD-TYPE 
                          261                           211 
  AMP PEAK 10(7P21.1) MUTATED AMP PEAK 10(7P21.1) WILD-TYPE 
                          261                           211 
[1] "Amp Peak 11(7p11.2) mutation analysis"
[1] 3
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                          252                           220 
  AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE 
                          252                           220 
[1] "Amp Peak 12(7q31.2) mutation analysis"
[1] 3
  AMP PEAK 12(7Q31.2) MUTATED AMP PEAK 12(7Q31.2) WILD-TYPE 
                          200                           272 
  AMP PEAK 12(7Q31.2) MUTATED AMP PEAK 12(7Q31.2) WILD-TYPE 
                          200                           272 
[1] "Amp Peak 13(8p11.23) mutation analysis"
[1] 3
  AMP PEAK 13(8P11.23) MUTATED AMP PEAK 13(8P11.23) WILD-TYPE 
                           126                            346 
  AMP PEAK 13(8P11.23) MUTATED AMP PEAK 13(8P11.23) WILD-TYPE 
                           126                            346 
[1] "Amp Peak 14(8p11.21) mutation analysis"
[1] 3
  AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE 
                           162                            310 
  AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE 
                           162                            310 
[1] "Amp Peak 15(8q11.1) mutation analysis"
[1] 3
  AMP PEAK 15(8Q11.1) MUTATED AMP PEAK 15(8Q11.1) WILD-TYPE 
                          214                           258 
  AMP PEAK 15(8Q11.1) MUTATED AMP PEAK 15(8Q11.1) WILD-TYPE 
                          214                           258 
[1] "Amp Peak 16(8q24.21) mutation analysis"
[1] 3
  AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE 
                           298                            174 
  AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE 
                           298                            174 
[1] "Amp Peak 17(10p15.1) mutation analysis"
[1] 3
  AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE 
                           124                            348 
  AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE 
                           124                            348 
[1] "Amp Peak 18(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE 
                           157                            315 
  AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE 
                           157                            315 
[1] "Amp Peak 19(12p12.1) mutation analysis"
[1] 3
  AMP PEAK 19(12P12.1) MUTATED AMP PEAK 19(12P12.1) WILD-TYPE 
                           163                            309 
  AMP PEAK 19(12P12.1) MUTATED AMP PEAK 19(12P12.1) WILD-TYPE 
                           163                            309 
[1] "Amp Peak 20(12q14.1) mutation analysis"
[1] 3
  AMP PEAK 20(12Q14.1) MUTATED AMP PEAK 20(12Q14.1) WILD-TYPE 
                           148                            324 
  AMP PEAK 20(12Q14.1) MUTATED AMP PEAK 20(12Q14.1) WILD-TYPE 
                           148                            324 
[1] "Amp Peak 21(12q15) mutation analysis"
[1] 3
  AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE 
                         151                          321 
  AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE 
                         151                          321 
[1] "Amp Peak 22(13q33.3) mutation analysis"
[1] 3
  AMP PEAK 22(13Q33.3) MUTATED AMP PEAK 22(13Q33.3) WILD-TYPE 
                            72                            400 
  AMP PEAK 22(13Q33.3) MUTATED AMP PEAK 22(13Q33.3) WILD-TYPE 
                            72                            400 
[1] "Amp Peak 23(14q13.3) mutation analysis"
[1] 3
  AMP PEAK 23(14Q13.3) MUTATED AMP PEAK 23(14Q13.3) WILD-TYPE 
                           211                            261 
  AMP PEAK 23(14Q13.3) MUTATED AMP PEAK 23(14Q13.3) WILD-TYPE 
                           211                            261 
[1] "Amp Peak 24(17q12) mutation analysis"
[1] 3
  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                         208                          264 
  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                         208                          264 
[1] "Amp Peak 25(17q23.1) mutation analysis"
[1] 3
  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE 
                           230                            242 
  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE 
                           230                            242 
[1] "Amp Peak 26(18q11.2) mutation analysis"
[1] 3
  AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE 
                            94                            378 
  AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE 
                            94                            378 
[1] "Amp Peak 27(19q12) mutation analysis"
[1] 3
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                         126                          346 
  AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE 
                         126                          346 
[1] "Amp Peak 28(20p11.21) mutation analysis"
[1] 3
  AMP PEAK 28(20P11.21) MUTATED AMP PEAK 28(20P11.21) WILD-TYPE 
                            179                             293 
  AMP PEAK 28(20P11.21) MUTATED AMP PEAK 28(20P11.21) WILD-TYPE 
                            179                             293 
[1] "Amp Peak 29(20q13.33) mutation analysis"
[1] 3
  AMP PEAK 29(20Q13.33) MUTATED AMP PEAK 29(20Q13.33) WILD-TYPE 
                            225                             247 
  AMP PEAK 29(20Q13.33) MUTATED AMP PEAK 29(20Q13.33) WILD-TYPE 
                            225                             247 
[1] "Amp Peak 30(22q11.22) mutation analysis"
[1] 3
  AMP PEAK 30(22Q11.22) MUTATED AMP PEAK 30(22Q11.22) WILD-TYPE 
                             81                             391 
  AMP PEAK 30(22Q11.22) MUTATED AMP PEAK 30(22Q11.22) WILD-TYPE 
                             81                             391 
[1] "Amp Peak 31(Xq28) mutation analysis"
[1] 3
  AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE 
                        151                         321 
  AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE 
                        151                         321 
[1] "Del Peak  1(1p36.13) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           108                            364 
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           108                            364 
[1] "Del Peak  2(1p13.3) mutation analysis"
[1] 3
  DEL PEAK  2(1P13.3) MUTATED DEL PEAK  2(1P13.3) WILD-TYPE 
                          139                           333 
  DEL PEAK  2(1P13.3) MUTATED DEL PEAK  2(1P13.3) WILD-TYPE 
                          139                           333 
[1] "Del Peak  3(1p13.1) mutation analysis"
[1] 3
  DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE 
                          137                           335 
  DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE 
                          137                           335 
[1] "Del Peak  4(2q22.1) mutation analysis"
[1] 3
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                           47                           425 
  DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE 
                           47                           425 
[1] "Del Peak  5(2q37.3) mutation analysis"
[1] 3
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           63                           409 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           63                           409 
[1] "Del Peak  6(3p21.31) mutation analysis"
[1] 3
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                           227                            245 
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                           227                            245 
[1] "Del Peak  7(3q11.1) mutation analysis"
[1] 3
  DEL PEAK  7(3Q11.1) MUTATED DEL PEAK  7(3Q11.1) WILD-TYPE 
                          133                           339 
  DEL PEAK  7(3Q11.1) MUTATED DEL PEAK  7(3Q11.1) WILD-TYPE 
                          133                           339 
[1] "Del Peak  8(3q29) mutation analysis"
[1] 3
  DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE 
                        129                         343 
  DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE 
                        129                         343 
[1] "Del Peak  9(4p16.3) mutation analysis"
[1] 3
  DEL PEAK  9(4P16.3) MUTATED DEL PEAK  9(4P16.3) WILD-TYPE 
                          116                           356 
  DEL PEAK  9(4P16.3) MUTATED DEL PEAK  9(4P16.3) WILD-TYPE 
                          116                           356 
[1] "Del Peak 10(4q22.1) mutation analysis"
[1] 3
  DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE 
                          142                           330 
  DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE 
                          142                           330 
[1] "Del Peak 11(4q35.1) mutation analysis"
[1] 3
  DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE 
                          172                           300 
  DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE 
                          172                           300 
[1] "Del Peak 12(5q11.2) mutation analysis"
[1] 3
  DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE 
                          166                           306 
  DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE 
                          166                           306 
[1] "Del Peak 13(5q22.1) mutation analysis"
[1] 3
  DEL PEAK 13(5Q22.1) MUTATED DEL PEAK 13(5Q22.1) WILD-TYPE 
                          189                           283 
  DEL PEAK 13(5Q22.1) MUTATED DEL PEAK 13(5Q22.1) WILD-TYPE 
                          189                           283 
[1] "Del Peak 14(6q12) mutation analysis"
[1] 3
  DEL PEAK 14(6Q12) MUTATED DEL PEAK 14(6Q12) WILD-TYPE 
                        158                         314 
  DEL PEAK 14(6Q12) MUTATED DEL PEAK 14(6Q12) WILD-TYPE 
                        158                         314 
[1] "Del Peak 15(6q22.31) mutation analysis"
[1] 3
  DEL PEAK 15(6Q22.31) MUTATED DEL PEAK 15(6Q22.31) WILD-TYPE 
                           234                            238 
  DEL PEAK 15(6Q22.31) MUTATED DEL PEAK 15(6Q22.31) WILD-TYPE 
                           234                            238 
[1] "Del Peak 16(6q26) mutation analysis"
[1] 3
  DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE 
                        238                         234 
  DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE 
                        238                         234 
[1] "Del Peak 17(8p23.2) mutation analysis"
[1] 3
  DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE 
                          229                           243 
  DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE 
                          229                           243 
[1] "Del Peak 18(8p12) mutation analysis"
[1] 3
  DEL PEAK 18(8P12) MUTATED DEL PEAK 18(8P12) WILD-TYPE 
                        205                         267 
  DEL PEAK 18(8P12) MUTATED DEL PEAK 18(8P12) WILD-TYPE 
                        205                         267 
[1] "Del Peak 19(8p11.21) mutation analysis"
[1] 3
  DEL PEAK 19(8P11.21) MUTATED DEL PEAK 19(8P11.21) WILD-TYPE 
                           107                            365 
  DEL PEAK 19(8P11.21) MUTATED DEL PEAK 19(8P11.21) WILD-TYPE 
                           107                            365 
[1] "Del Peak 20(8q11.21) mutation analysis"
[1] 3
  DEL PEAK 20(8Q11.21) MUTATED DEL PEAK 20(8Q11.21) WILD-TYPE 
                            59                            413 
  DEL PEAK 20(8Q11.21) MUTATED DEL PEAK 20(8Q11.21) WILD-TYPE 
                            59                            413 
[1] "Del Peak 21(9p23) mutation analysis"
[1] 3
  DEL PEAK 21(9P23) MUTATED DEL PEAK 21(9P23) WILD-TYPE 
                        258                         214 
  DEL PEAK 21(9P23) MUTATED DEL PEAK 21(9P23) WILD-TYPE 
                        258                         214 
[1] "Del Peak 22(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE 
                          264                           208 
  DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE 
                          264                           208 
[1] "Del Peak 23(9q21.11) mutation analysis"
[1] 3
  DEL PEAK 23(9Q21.11) MUTATED DEL PEAK 23(9Q21.11) WILD-TYPE 
                           231                            241 
  DEL PEAK 23(9Q21.11) MUTATED DEL PEAK 23(9Q21.11) WILD-TYPE 
                           231                            241 
[1] "Del Peak 24(10p15.3) mutation analysis"
[1] 3
  DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE 
                           113                            359 
  DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE 
                           113                            359 
[1] "Del Peak 25(10q26.3) mutation analysis"
[1] 3
  DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE 
                           130                            342 
  DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE 
                           130                            342 
[1] "Del Peak 26(11p15.5) mutation analysis"
[1] 3
  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                           126                            346 
  DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE 
                           126                            346 
[1] "Del Peak 27(11q23.2) mutation analysis"
[1] 3
  DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE 
                           109                            363 
  DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE 
                           109                            363 
[1] "Del Peak 28(11q25) mutation analysis"
[1] 3
  DEL PEAK 28(11Q25) MUTATED DEL PEAK 28(11Q25) WILD-TYPE 
                         105                          367 
  DEL PEAK 28(11Q25) MUTATED DEL PEAK 28(11Q25) WILD-TYPE 
                         105                          367 
[1] "Del Peak 29(12p13.2) mutation analysis"
[1] 3
  DEL PEAK 29(12P13.2) MUTATED DEL PEAK 29(12P13.2) WILD-TYPE 
                           126                            346 
  DEL PEAK 29(12P13.2) MUTATED DEL PEAK 29(12P13.2) WILD-TYPE 
                           126                            346 
[1] "Del Peak 30(12q12) mutation analysis"
[1] 3
  DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE 
                          90                          382 
  DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE 
                          90                          382 
[1] "Del Peak 31(12q24.33) mutation analysis"
[1] 3
  DEL PEAK 31(12Q24.33) MUTATED DEL PEAK 31(12Q24.33) WILD-TYPE 
                            115                             357 
  DEL PEAK 31(12Q24.33) MUTATED DEL PEAK 31(12Q24.33) WILD-TYPE 
                            115                             357 
[1] "Del Peak 32(13q12.11) mutation analysis"
[1] 3
  DEL PEAK 32(13Q12.11) MUTATED DEL PEAK 32(13Q12.11) WILD-TYPE 
                            265                             207 
  DEL PEAK 32(13Q12.11) MUTATED DEL PEAK 32(13Q12.11) WILD-TYPE 
                            265                             207 
[1] "Del Peak 33(13q12.13) mutation analysis"
[1] 3
  DEL PEAK 33(13Q12.13) MUTATED DEL PEAK 33(13Q12.13) WILD-TYPE 
                            266                             206 
  DEL PEAK 33(13Q12.13) MUTATED DEL PEAK 33(13Q12.13) WILD-TYPE 
                            266                             206 
[1] "Del Peak 34(13q14.2) mutation analysis"
[1] 3
  DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE 
                           256                            216 
  DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE 
                           256                            216 
[1] "Del Peak 35(13q34) mutation analysis"
[1] 3
  DEL PEAK 35(13Q34) MUTATED DEL PEAK 35(13Q34) WILD-TYPE 
                         217                          255 
  DEL PEAK 35(13Q34) MUTATED DEL PEAK 35(13Q34) WILD-TYPE 
                         217                          255 
[1] "Del Peak 36(14q32.33) mutation analysis"
[1] 3
  DEL PEAK 36(14Q32.33) MUTATED DEL PEAK 36(14Q32.33) WILD-TYPE 
                            140                             332 
  DEL PEAK 36(14Q32.33) MUTATED DEL PEAK 36(14Q32.33) WILD-TYPE 
                            140                             332 
[1] "Del Peak 37(15q11.2) mutation analysis"
[1] 3
  DEL PEAK 37(15Q11.2) MUTATED DEL PEAK 37(15Q11.2) WILD-TYPE 
                           239                            233 
  DEL PEAK 37(15Q11.2) MUTATED DEL PEAK 37(15Q11.2) WILD-TYPE 
                           239                            233 
[1] "Del Peak 38(16q23.1) mutation analysis"
[1] 3
  DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE 
                           160                            312 
  DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE 
                           160                            312 
[1] "Del Peak 39(16q24.3) mutation analysis"
[1] 3
  DEL PEAK 39(16Q24.3) MUTATED DEL PEAK 39(16Q24.3) WILD-TYPE 
                           178                            294 
  DEL PEAK 39(16Q24.3) MUTATED DEL PEAK 39(16Q24.3) WILD-TYPE 
                           178                            294 
[1] "Del Peak 40(17p13.3) mutation analysis"
[1] 3
  DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE 
                           252                            220 
  DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE 
                           252                            220 
[1] "Del Peak 41(18q21.32) mutation analysis"
[1] 3
  DEL PEAK 41(18Q21.32) MUTATED DEL PEAK 41(18Q21.32) WILD-TYPE 
                            233                             239 
  DEL PEAK 41(18Q21.32) MUTATED DEL PEAK 41(18Q21.32) WILD-TYPE 
                            233                             239 
[1] "Del Peak 42(18q23) mutation analysis"
[1] 3
  DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE 
                         228                          244 
  DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE 
                         228                          244 
[1] "Del Peak 43(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE 
                           252                            220 
  DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE 
                           252                            220 
[1] "Del Peak 44(19p13.2) mutation analysis"
[1] 3
  DEL PEAK 44(19P13.2) MUTATED DEL PEAK 44(19P13.2) WILD-TYPE 
                           246                            226 
  DEL PEAK 44(19P13.2) MUTATED DEL PEAK 44(19P13.2) WILD-TYPE 
                           246                            226 
[1] "Del Peak 45(19p12) mutation analysis"
[1] 3
  DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE 
                         199                          273 
  DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE 
                         199                          273 
[1] "Del Peak 46(19q13.33) mutation analysis"
[1] 3
  DEL PEAK 46(19Q13.33) MUTATED DEL PEAK 46(19Q13.33) WILD-TYPE 
                            174                             298 
  DEL PEAK 46(19Q13.33) MUTATED DEL PEAK 46(19Q13.33) WILD-TYPE 
                            174                             298 
[1] "Del Peak 47(20p13) mutation analysis"
[1] 3
  DEL PEAK 47(20P13) MUTATED DEL PEAK 47(20P13) WILD-TYPE 
                         121                          351 
  DEL PEAK 47(20P13) MUTATED DEL PEAK 47(20P13) WILD-TYPE 
                         121                          351 
[1] "Del Peak 48(21q11.2) mutation analysis"
[1] 3
  DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE 
                           157                            315 
  DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE 
                           157                            315 
[1] "Del Peak 49(21q21.3) mutation analysis"
[1] 3
  DEL PEAK 49(21Q21.3) MUTATED DEL PEAK 49(21Q21.3) WILD-TYPE 
                           153                            319 
  DEL PEAK 49(21Q21.3) MUTATED DEL PEAK 49(21Q21.3) WILD-TYPE 
                           153                            319 
[1] "Del Peak 50(22q13.32) mutation analysis"
[1] 3
  DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE 
                            224                             248 
  DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE 
                            224                             248 
[1] "Del Peak 51(Xp22.2) mutation analysis"
[1] 3
  DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE 
                          137                           335 
  DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE 
                          137                           335 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 

Input Data has 10 rows and 472 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 472 columns, 0 survival variables, and 10 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p34.3) mutation analysis
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                           0                             5
  CLUS_2                           3                             6
  CLUS_3                           4                             8
  CLUS_4                           1                             5
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                           1                             6
  CLUS_2                           5                             8
  CLUS_3                           2                            10
D1V3, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          64                            84
  CLUS_2                          33                           155
  CLUS_3                          21                            66
  CLUS_4                           7                            42
D1V4, multiclass
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          29                            56
  CLUS_2                          16                            59
  CLUS_3                          24                            51
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                           6                            17
  CLUS_2                          33                            56
  CLUS_3                          17                            48
  CLUS_4                          13                            45
D1V7, multiclass
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          35                           117
  CLUS_2                          27                            78
  CLUS_3                          35                            60
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          40                           118
  CLUS_2                          50                           133
  CLUS_3                          21                            36
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P34.3) MUTATED AMP PEAK  1(1P34.3) WILD-TYPE
  CLUS_1                          42                           121
  CLUS_2                          33                            82
  CLUS_3                          36                            84

Clustering(2) Variable = Amp Peak  2(1p22.3) mutation analysis
D2V1, multiclass
        clus
vv       AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                           3                             6
  CLUS_3                           2                            10
  CLUS_4                           1                             5
D2V2, multiclass
        clus
vv       AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE
  CLUS_1                           1                             6
  CLUS_2                           3                            10
  CLUS_3                           3                             9
D2V3, multiclass
        clus
vv       AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE
  CLUS_1                          64                            84
  CLUS_2                          31                           157
  CLUS_3                          20                            67
  CLUS_4                           9                            40
D2V4, multiclass
D2V5, multiclass
        clus
vv       AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE
  CLUS_1                          28                            57
  CLUS_2                          15                            60
  CLUS_3                          21                            54
D2V6, multiclass
        clus
vv       AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE
  CLUS_1                           5                            18
  CLUS_2                          30                            59
  CLUS_3                          16                            49
  CLUS_4                          13                            45
D2V7, multiclass
D2V8, multiclass
        clus
vv       AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE
  CLUS_1                          31                           121
  CLUS_2                          28                            77
  CLUS_3                          37                            58
D2V9, multiclass
        clus
vv       AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE
  CLUS_1                          37                           121
  CLUS_2                          54                           129
  CLUS_3                          14                            43
D2V10, multiclass
        clus
vv       AMP PEAK  2(1P22.3) MUTATED AMP PEAK  2(1P22.3) WILD-TYPE
  CLUS_1                          36                           127
  CLUS_2                          29                            86
  CLUS_3                          40                            80

Clustering(3) Variable = Amp Peak  3(1q21.3) mutation analysis
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                           4                             1
  CLUS_2                           7                             2
  CLUS_3                           7                             5
  CLUS_4                           2                             4
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                           3                             4
  CLUS_2                           8                             5
  CLUS_3                           9                             3
D3V3, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                         118                            30
  CLUS_2                         110                            78
  CLUS_3                          65                            22
  CLUS_4                          43                             6
D3V4, multiclass
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          61                            24
  CLUS_2                          60                            15
  CLUS_3                          55                            20
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                          16                             7
  CLUS_2                          62                            27
  CLUS_3                          51                            14
  CLUS_4                          47                            11
D3V7, multiclass
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                         108                            44
  CLUS_2                          78                            27
  CLUS_3                          68                            27
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                         106                            52
  CLUS_2                         141                            42
  CLUS_3                          34                            23
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q21.3) MUTATED AMP PEAK  3(1Q21.3) WILD-TYPE
  CLUS_1                         111                            52
  CLUS_2                          69                            46
  CLUS_3                         101                            19

Clustering(4) Variable = Amp Peak  4(3q26.2) mutation analysis
D4V1, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                           0                             5
  CLUS_2                           6                             3
  CLUS_3                           0                            12
  CLUS_4                           4                             2
D4V2, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                           4                             3
  CLUS_2                           0                            13
  CLUS_3                           6                             6
D4V3, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          52                            96
  CLUS_2                          35                           153
  CLUS_3                          52                            35
  CLUS_4                          18                            31
D4V4, multiclass
D4V5, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          35                            50
  CLUS_2                          16                            59
  CLUS_3                          38                            37
D4V6, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                           6                            17
  CLUS_2                          39                            50
  CLUS_3                          32                            33
  CLUS_4                          12                            46
D4V7, multiclass
D4V8, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          32                           120
  CLUS_2                          55                            50
  CLUS_3                          41                            54
D4V9, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          32                           126
  CLUS_2                          90                            93
  CLUS_3                          17                            40
D4V10, multiclass
        clus
vv       AMP PEAK  4(3Q26.2) MUTATED AMP PEAK  4(3Q26.2) WILD-TYPE
  CLUS_1                          32                           131
  CLUS_2                          46                            69
  CLUS_3                          61                            59

Clustering(5) Variable = Amp Peak  5(4q12) mutation analysis
D5V1, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         1                           4
  CLUS_2                         3                           6
  CLUS_3                         3                           9
  CLUS_4                         3                           3
D5V2, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         4                           3
  CLUS_2                         4                           9
  CLUS_3                         2                          10
D5V3, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        45                         103
  CLUS_2                        13                         175
  CLUS_3                        25                          62
  CLUS_4                         5                          44
D5V4, multiclass
D5V5, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        19                          66
  CLUS_2                         8                          67
  CLUS_3                        21                          54
D5V6, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         3                          20
  CLUS_2                        24                          65
  CLUS_3                        16                          49
  CLUS_4                         5                          53
D5V7, multiclass
D5V8, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        20                         132
  CLUS_2                        22                          83
  CLUS_3                        28                          67
D5V9, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        20                         138
  CLUS_2                        44                         139
  CLUS_3                        12                          45
D5V10, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                        20                         143
  CLUS_2                        32                          83
  CLUS_3                        24                          96

Clustering(6) Variable = Amp Peak  6(5p15.33) mutation analysis
D6V1, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            5                              4
  CLUS_3                            7                              5
  CLUS_4                            4                              2
D6V2, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                            5                              2
  CLUS_2                            8                              5
  CLUS_3                            7                              5
D6V3, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                          136                             12
  CLUS_2                           83                            105
  CLUS_3                           48                             39
  CLUS_4                           37                             12
D6V4, multiclass
D6V5, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           65                             20
  CLUS_2                           44                             31
  CLUS_3                           50                             25
D6V6, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           11                             12
  CLUS_2                           70                             19
  CLUS_3                           48                             17
  CLUS_4                           30                             28
D6V7, multiclass
D6V8, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           87                             65
  CLUS_2                           66                             39
  CLUS_3                           74                             21
D6V9, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           87                             71
  CLUS_2                          131                             52
  CLUS_3                           41                             16
D6V10, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           90                             73
  CLUS_2                           80                             35
  CLUS_3                           89                             31

Clustering(7) Variable = Amp Peak  7(5p13.1) mutation analysis
D7V1, multiclass
        clus
vv       AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE
  CLUS_1                           5                             0
  CLUS_2                           5                             4
  CLUS_3                           6                             6
  CLUS_4                           3                             3
D7V2, multiclass
        clus
vv       AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE
  CLUS_1                           4                             3
  CLUS_2                           7                             6
  CLUS_3                           8                             4
D7V3, multiclass
        clus
vv       AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE
  CLUS_1                         124                            24
  CLUS_2                          75                           113
  CLUS_3                          42                            45
  CLUS_4                          39                            10
D7V4, multiclass
D7V5, multiclass
        clus
vv       AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE
  CLUS_1                          56                            29
  CLUS_2                          42                            33
  CLUS_3                          47                            28
D7V6, multiclass
        clus
vv       AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE
  CLUS_1                          10                            13
  CLUS_2                          60                            29
  CLUS_3                          46                            19
  CLUS_4                          29                            29
D7V7, multiclass
D7V8, multiclass
        clus
vv       AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE
  CLUS_1                          78                            74
  CLUS_2                          64                            41
  CLUS_3                          62                            33
D7V9, multiclass
        clus
vv       AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE
  CLUS_1                          76                            82
  CLUS_2                         121                            62
  CLUS_3                          38                            19
D7V10, multiclass
        clus
vv       AMP PEAK  7(5P13.1) MUTATED AMP PEAK  7(5P13.1) WILD-TYPE
  CLUS_1                          82                            81
  CLUS_2                          70                            45
  CLUS_3                          83                            37

Clustering(8) Variable = Amp Peak  8(5q35.1) mutation analysis
D8V1, multiclass
        clus
vv       AMP PEAK  8(5Q35.1) MUTATED AMP PEAK  8(5Q35.1) WILD-TYPE
  CLUS_1                           3                             2
  CLUS_2                           2                             7
  CLUS_3                           6                             6
  CLUS_4                           0                             6
D8V2, multiclass
        clus
vv       AMP PEAK  8(5Q35.1) MUTATED AMP PEAK  8(5Q35.1) WILD-TYPE
  CLUS_1                           1                             6
  CLUS_2                           6                             7
  CLUS_3                           4                             8
D8V3, multiclass
        clus
vv       AMP PEAK  8(5Q35.1) MUTATED AMP PEAK  8(5Q35.1) WILD-TYPE
  CLUS_1                          45                           103
  CLUS_2                          45                           143
  CLUS_3                           9                            78
  CLUS_4                          11                            38
D8V4, multiclass
D8V5, multiclass
        clus
vv       AMP PEAK  8(5Q35.1) MUTATED AMP PEAK  8(5Q35.1) WILD-TYPE
  CLUS_1                          23                            62
  CLUS_2                          21                            54
  CLUS_3                          11                            64
D8V6, multiclass
        clus
vv       AMP PEAK  8(5Q35.1) MUTATED AMP PEAK  8(5Q35.1) WILD-TYPE
  CLUS_1                           4                            19
  CLUS_2                          26                            63
  CLUS_3                          10                            55
  CLUS_4                          15                            43
D8V7, multiclass
D8V8, multiclass
        clus
vv       AMP PEAK  8(5Q35.1) MUTATED AMP PEAK  8(5Q35.1) WILD-TYPE
  CLUS_1                          49                           103
  CLUS_2                          11                            94
  CLUS_3                          24                            71
D8V9, multiclass
        clus
vv       AMP PEAK  8(5Q35.1) MUTATED AMP PEAK  8(5Q35.1) WILD-TYPE
  CLUS_1                          45                           113
  CLUS_2                          27                           156
  CLUS_3                          19                            38
D8V10, multiclass
        clus
vv       AMP PEAK  8(5Q35.1) MUTATED AMP PEAK  8(5Q35.1) WILD-TYPE
  CLUS_1                          47                           116
  CLUS_2                          26                            89
  CLUS_3                          18                           102

Clustering(9) Variable = Amp Peak  9(6p21.1) mutation analysis
D9V1, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                           2                             7
  CLUS_3                           4                             8
  CLUS_4                           3                             3
D9V2, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                           4                             3
  CLUS_2                           4                             9
  CLUS_3                           2                            10
D9V3, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          62                            86
  CLUS_2                          49                           139
  CLUS_3                          34                            53
  CLUS_4                          28                            21
D9V4, multiclass
D9V5, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          24                            61
  CLUS_2                          34                            41
  CLUS_3                          28                            47
D9V6, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                           6                            17
  CLUS_2                          33                            56
  CLUS_3                          27                            38
  CLUS_4                          20                            38
D9V7, multiclass
D9V8, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          55                            97
  CLUS_2                          40                            65
  CLUS_3                          36                            59
D9V9, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          52                           106
  CLUS_2                          77                           106
  CLUS_3                          18                            39
D9V10, multiclass
        clus
vv       AMP PEAK  9(6P21.1) MUTATED AMP PEAK  9(6P21.1) WILD-TYPE
  CLUS_1                          49                           114
  CLUS_2                          43                            72
  CLUS_3                          55                            65

Clustering(10) Variable = Amp Peak 10(7p21.1) mutation analysis
D10V1, multiclass
        clus
vv       AMP PEAK 10(7P21.1) MUTATED AMP PEAK 10(7P21.1) WILD-TYPE
  CLUS_1                           4                             1
  CLUS_2                           5                             4
  CLUS_3                           6                             6
  CLUS_4                           3                             3
D10V2, multiclass
        clus
vv       AMP PEAK 10(7P21.1) MUTATED AMP PEAK 10(7P21.1) WILD-TYPE
  CLUS_1                           4                             3
  CLUS_2                           7                             6
  CLUS_3                           7                             5
D10V3, multiclass
        clus
vv       AMP PEAK 10(7P21.1) MUTATED AMP PEAK 10(7P21.1) WILD-TYPE
  CLUS_1                         125                            23
  CLUS_2                          70                           118
  CLUS_3                          50                            37
  CLUS_4                          16                            33
D10V4, multiclass
D10V5, multiclass
        clus
vv       AMP PEAK 10(7P21.1) MUTATED AMP PEAK 10(7P21.1) WILD-TYPE
  CLUS_1                          57                            28
  CLUS_2                          30                            45
  CLUS_3                          46                            29
D10V6, multiclass
        clus
vv       AMP PEAK 10(7P21.1) MUTATED AMP PEAK 10(7P21.1) WILD-TYPE
  CLUS_1                           8                            15
  CLUS_2                          63                            26
  CLUS_3                          37                            28
  CLUS_4                          25                            33
D10V7, multiclass
D10V8, multiclass
        clus
vv       AMP PEAK 10(7P21.1) MUTATED AMP PEAK 10(7P21.1) WILD-TYPE
  CLUS_1                          65                            87
  CLUS_2                          55                            50
  CLUS_3                          76                            19
D10V9, multiclass
        clus
vv       AMP PEAK 10(7P21.1) MUTATED AMP PEAK 10(7P21.1) WILD-TYPE
  CLUS_1                          68                            90
  CLUS_2                         108                            75
  CLUS_3                          41                            16
D10V10, multiclass
        clus
vv       AMP PEAK 10(7P21.1) MUTATED AMP PEAK 10(7P21.1) WILD-TYPE
  CLUS_1                          70                            93
  CLUS_2                          77                            38
  CLUS_3                          70                            50

Clustering(11) Variable = Amp Peak 11(7p11.2) mutation analysis
D11V1, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                           5                             4
  CLUS_3                           6                             6
  CLUS_4                           3                             3
D11V2, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                           3                             4
  CLUS_2                           7                             6
  CLUS_3                           6                             6
D11V3, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                         120                            28
  CLUS_2                          66                           122
  CLUS_3                          51                            36
  CLUS_4                          15                            34
D11V4, multiclass
D11V5, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          54                            31
  CLUS_2                          28                            47
  CLUS_3                          47                            28
D11V6, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                           7                            16
  CLUS_2                          62                            27
  CLUS_3                          37                            28
  CLUS_4                          23                            35
D11V7, multiclass
D11V8, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          58                            94
  CLUS_2                          54                            51
  CLUS_3                          75                            20
D11V9, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          59                            99
  CLUS_2                         108                            75
  CLUS_3                          41                            16
D11V10, multiclass
        clus
vv       AMP PEAK 11(7P11.2) MUTATED AMP PEAK 11(7P11.2) WILD-TYPE
  CLUS_1                          62                           101
  CLUS_2                          81                            34
  CLUS_3                          65                            55

Clustering(12) Variable = Amp Peak 12(7q31.2) mutation analysis
D12V1, multiclass
        clus
vv       AMP PEAK 12(7Q31.2) MUTATED AMP PEAK 12(7Q31.2) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                           6                             3
  CLUS_3                           4                             8
  CLUS_4                           2                             4
D12V2, multiclass
        clus
vv       AMP PEAK 12(7Q31.2) MUTATED AMP PEAK 12(7Q31.2) WILD-TYPE
  CLUS_1                           2                             5
  CLUS_2                           5                             8
  CLUS_3                           7                             5
D12V3, multiclass
        clus
vv       AMP PEAK 12(7Q31.2) MUTATED AMP PEAK 12(7Q31.2) WILD-TYPE
  CLUS_1                          94                            54
  CLUS_2                          54                           134
  CLUS_3                          34                            53
  CLUS_4                          18                            31
D12V4, multiclass
D12V5, multiclass
        clus
vv       AMP PEAK 12(7Q31.2) MUTATED AMP PEAK 12(7Q31.2) WILD-TYPE
  CLUS_1                          42                            43
  CLUS_2                          27                            48
  CLUS_3                          35                            40
D12V6, multiclass
        clus
vv       AMP PEAK 12(7Q31.2) MUTATED AMP PEAK 12(7Q31.2) WILD-TYPE
  CLUS_1                           9                            14
  CLUS_2                          49                            40
  CLUS_3                          27                            38
  CLUS_4                          19                            39
D12V7, multiclass
D12V8, multiclass
        clus
vv       AMP PEAK 12(7Q31.2) MUTATED AMP PEAK 12(7Q31.2) WILD-TYPE
  CLUS_1                          48                           104
  CLUS_2                          36                            69
  CLUS_3                          63                            32
D12V9, multiclass
        clus
vv       AMP PEAK 12(7Q31.2) MUTATED AMP PEAK 12(7Q31.2) WILD-TYPE
  CLUS_1                          52                           106
  CLUS_2                          88                            95
  CLUS_3                          29                            28
D12V10, multiclass
        clus
vv       AMP PEAK 12(7Q31.2) MUTATED AMP PEAK 12(7Q31.2) WILD-TYPE
  CLUS_1                          55                           108
  CLUS_2                          65                            50
  CLUS_3                          49                            71

Clustering(13) Variable = Amp Peak 13(8p11.23) mutation analysis
D13V1, multiclass
        clus
vv       AMP PEAK 13(8P11.23) MUTATED AMP PEAK 13(8P11.23) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            4                              5
  CLUS_3                            1                             11
  CLUS_4                            1                              5
D13V2, multiclass
        clus
vv       AMP PEAK 13(8P11.23) MUTATED AMP PEAK 13(8P11.23) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            1                             12
  CLUS_3                            5                              7
D13V3, multiclass
        clus
vv       AMP PEAK 13(8P11.23) MUTATED AMP PEAK 13(8P11.23) WILD-TYPE
  CLUS_1                           34                            114
  CLUS_2                           26                            162
  CLUS_3                           28                             59
  CLUS_4                           38                             11
D13V4, multiclass
D13V5, multiclass
        clus
vv       AMP PEAK 13(8P11.23) MUTATED AMP PEAK 13(8P11.23) WILD-TYPE
  CLUS_1                           23                             62
  CLUS_2                           18                             57
  CLUS_3                           30                             45
D13V6, multiclass
        clus
vv       AMP PEAK 13(8P11.23) MUTATED AMP PEAK 13(8P11.23) WILD-TYPE
  CLUS_1                            4                             19
  CLUS_2                           24                             65
  CLUS_3                           29                             36
  CLUS_4                           14                             44
D13V7, multiclass
D13V8, multiclass
        clus
vv       AMP PEAK 13(8P11.23) MUTATED AMP PEAK 13(8P11.23) WILD-TYPE
  CLUS_1                           29                            123
  CLUS_2                           48                             57
  CLUS_3                           24                             71
D13V9, multiclass
        clus
vv       AMP PEAK 13(8P11.23) MUTATED AMP PEAK 13(8P11.23) WILD-TYPE
  CLUS_1                           31                            127
  CLUS_2                           64                            119
  CLUS_3                           15                             42
D13V10, multiclass
        clus
vv       AMP PEAK 13(8P11.23) MUTATED AMP PEAK 13(8P11.23) WILD-TYPE
  CLUS_1                           35                            128
  CLUS_2                           30                             85
  CLUS_3                           45                             75

Clustering(14) Variable = Amp Peak 14(8p11.21) mutation analysis
D14V1, multiclass
        clus
vv       AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            4                              5
  CLUS_3                            1                             11
  CLUS_4                            2                              4
D14V2, multiclass
        clus
vv       AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE
  CLUS_1                            2                              5
  CLUS_2                            1                             12
  CLUS_3                            5                              7
D14V3, multiclass
        clus
vv       AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE
  CLUS_1                           47                            101
  CLUS_2                           32                            156
  CLUS_3                           39                             48
  CLUS_4                           44                              5
D14V4, multiclass
D14V5, multiclass
        clus
vv       AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE
  CLUS_1                           30                             55
  CLUS_2                           19                             56
  CLUS_3                           36                             39
D14V6, multiclass
        clus
vv       AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE
  CLUS_1                            3                             20
  CLUS_2                           32                             57
  CLUS_3                           33                             32
  CLUS_4                           17                             41
D14V7, multiclass
D14V8, multiclass
        clus
vv       AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE
  CLUS_1                           32                            120
  CLUS_2                           57                             48
  CLUS_3                           34                             61
D14V9, multiclass
        clus
vv       AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE
  CLUS_1                           36                            122
  CLUS_2                           84                             99
  CLUS_3                           19                             38
D14V10, multiclass
        clus
vv       AMP PEAK 14(8P11.21) MUTATED AMP PEAK 14(8P11.21) WILD-TYPE
  CLUS_1                           41                            122
  CLUS_2                           41                             74
  CLUS_3                           57                             63

Clustering(15) Variable = Amp Peak 15(8q11.1) mutation analysis
D15V1, multiclass
        clus
vv       AMP PEAK 15(8Q11.1) MUTATED AMP PEAK 15(8Q11.1) WILD-TYPE
  CLUS_1                           4                             1
  CLUS_2                           6                             3
  CLUS_3                           1                            11
  CLUS_4                           4                             2
D15V2, multiclass
        clus
vv       AMP PEAK 15(8Q11.1) MUTATED AMP PEAK 15(8Q11.1) WILD-TYPE
  CLUS_1                           5                             2
  CLUS_2                           2                            11
  CLUS_3                           8                             4
D15V3, multiclass
        clus
vv       AMP PEAK 15(8Q11.1) MUTATED AMP PEAK 15(8Q11.1) WILD-TYPE
  CLUS_1                          85                            63
  CLUS_2                          39                           149
  CLUS_3                          46                            41
  CLUS_4                          44                             5
D15V4, multiclass
D15V5, multiclass
        clus
vv       AMP PEAK 15(8Q11.1) MUTATED AMP PEAK 15(8Q11.1) WILD-TYPE
  CLUS_1                          41                            44
  CLUS_2                          27                            48
  CLUS_3                          43                            32
D15V6, multiclass
        clus
vv       AMP PEAK 15(8Q11.1) MUTATED AMP PEAK 15(8Q11.1) WILD-TYPE
  CLUS_1                           5                            18
  CLUS_2                          48                            41
  CLUS_3                          37                            28
  CLUS_4                          21                            37
D15V7, multiclass
D15V8, multiclass
        clus
vv       AMP PEAK 15(8Q11.1) MUTATED AMP PEAK 15(8Q11.1) WILD-TYPE
  CLUS_1                          50                           102
  CLUS_2                          64                            41
  CLUS_3                          48                            47
D15V9, multiclass
        clus
vv       AMP PEAK 15(8Q11.1) MUTATED AMP PEAK 15(8Q11.1) WILD-TYPE
  CLUS_1                          47                           111
  CLUS_2                         108                            75
  CLUS_3                          25                            32
D15V10, multiclass
        clus
vv       AMP PEAK 15(8Q11.1) MUTATED AMP PEAK 15(8Q11.1) WILD-TYPE
  CLUS_1                          51                           112
  CLUS_2                          57                            58
  CLUS_3                          72                            48

Clustering(16) Variable = Amp Peak 16(8q24.21) mutation analysis
D16V1, multiclass
        clus
vv       AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            8                              1
  CLUS_3                            4                              8
  CLUS_4                            5                              1
D16V2, multiclass
        clus
vv       AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE
  CLUS_1                            6                              1
  CLUS_2                            5                              8
  CLUS_3                           10                              2
D16V3, multiclass
        clus
vv       AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE
  CLUS_1                          113                             35
  CLUS_2                           73                            115
  CLUS_3                           65                             22
  CLUS_4                           47                              2
D16V4, multiclass
D16V5, multiclass
        clus
vv       AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE
  CLUS_1                           58                             27
  CLUS_2                           44                             31
  CLUS_3                           55                             20
D16V6, multiclass
        clus
vv       AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE
  CLUS_1                           10                             13
  CLUS_2                           68                             21
  CLUS_3                           48                             17
  CLUS_4                           31                             27
D16V7, multiclass
D16V8, multiclass
        clus
vv       AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE
  CLUS_1                           76                             76
  CLUS_2                           77                             28
  CLUS_3                           72                             23
D16V9, multiclass
        clus
vv       AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE
  CLUS_1                           79                             79
  CLUS_2                          137                             46
  CLUS_3                           35                             22
D16V10, multiclass
        clus
vv       AMP PEAK 16(8Q24.21) MUTATED AMP PEAK 16(8Q24.21) WILD-TYPE
  CLUS_1                           81                             82
  CLUS_2                           80                             35
  CLUS_3                           90                             30

Clustering(17) Variable = Amp Peak 17(10p15.1) mutation analysis
D17V1, multiclass
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  CLUS_1                            0                              5
  CLUS_2                            2                              7
  CLUS_3                            0                             12
  CLUS_4                            3                              3
D17V2, multiclass
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  CLUS_1                            3                              4
  CLUS_2                            0                             13
  CLUS_3                            2                             10
D17V3, multiclass
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  CLUS_1                           39                            109
  CLUS_2                           29                            159
  CLUS_3                           34                             53
  CLUS_4                           22                             27
D17V4, multiclass
D17V5, multiclass
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  CLUS_1                           16                             69
  CLUS_2                           24                             51
  CLUS_3                           32                             43
D17V6, multiclass
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  CLUS_1                            8                             15
  CLUS_2                           19                             70
  CLUS_3                           28                             37
  CLUS_4                           17                             41
D17V7, multiclass
D17V8, multiclass
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  CLUS_1                           24                            128
  CLUS_2                           47                             58
  CLUS_3                           24                             71
D17V9, multiclass
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  CLUS_1                           29                            129
  CLUS_2                           65                            118
  CLUS_3                           11                             46
D17V10, multiclass
        clus
vv       AMP PEAK 17(10P15.1) MUTATED AMP PEAK 17(10P15.1) WILD-TYPE
  CLUS_1                           27                            136
  CLUS_2                           32                             83
  CLUS_3                           46                             74

Clustering(18) Variable = Amp Peak 18(11q13.3) mutation analysis
D18V1, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                            2                              3
  CLUS_2                            4                              5
  CLUS_3                            1                             11
  CLUS_4                            6                              0
D18V2, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                            7                              0
  CLUS_2                            2                             11
  CLUS_3                            4                              8
D18V3, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                           69                             79
  CLUS_2                           24                            164
  CLUS_3                           42                             45
  CLUS_4                           22                             27
D18V4, multiclass
D18V5, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                           28                             57
  CLUS_2                           19                             56
  CLUS_3                           36                             39
D18V6, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                            3                             20
  CLUS_2                           34                             55
  CLUS_3                           31                             34
  CLUS_4                           15                             43
D18V7, multiclass
D18V8, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                           30                            122
  CLUS_2                           53                             52
  CLUS_3                           40                             55
D18V9, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                           28                            130
  CLUS_2                           86                             97
  CLUS_3                           20                             37
D18V10, multiclass
        clus
vv       AMP PEAK 18(11Q13.3) MUTATED AMP PEAK 18(11Q13.3) WILD-TYPE
  CLUS_1                           30                            133
  CLUS_2                           45                             70
  CLUS_3                           59                             61

Clustering(19) Variable = Amp Peak 19(12p12.1) mutation analysis
D19V1, multiclass
        clus
vv       AMP PEAK 19(12P12.1) MUTATED AMP PEAK 19(12P12.1) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            3                              6
  CLUS_3                            2                             10
  CLUS_4                            4                              2
D19V2, multiclass
        clus
vv       AMP PEAK 19(12P12.1) MUTATED AMP PEAK 19(12P12.1) WILD-TYPE
  CLUS_1                            5                              2
  CLUS_2                            2                             11
  CLUS_3                            3                              9
D19V3, multiclass
        clus
vv       AMP PEAK 19(12P12.1) MUTATED AMP PEAK 19(12P12.1) WILD-TYPE
  CLUS_1                           42                            106
  CLUS_2                           36                            152
  CLUS_3                           70                             17
  CLUS_4                           15                             34
D19V4, multiclass
D19V5, multiclass
        clus
vv       AMP PEAK 19(12P12.1) MUTATED AMP PEAK 19(12P12.1) WILD-TYPE
  CLUS_1                           28                             57
  CLUS_2                           18                             57
  CLUS_3                           33                             42
D19V6, multiclass
        clus
vv       AMP PEAK 19(12P12.1) MUTATED AMP PEAK 19(12P12.1) WILD-TYPE
  CLUS_1                            6                             17
  CLUS_2                           32                             57
  CLUS_3                           28                             37
  CLUS_4                           13                             45
D19V7, multiclass
D19V8, multiclass
        clus
vv       AMP PEAK 19(12P12.1) MUTATED AMP PEAK 19(12P12.1) WILD-TYPE
  CLUS_1                           34                            118
  CLUS_2                           55                             50
  CLUS_3                           36                             59
D19V9, multiclass
        clus
vv       AMP PEAK 19(12P12.1) MUTATED AMP PEAK 19(12P12.1) WILD-TYPE
  CLUS_1                           35                            123
  CLUS_2                           85                             98
  CLUS_3                           17                             40
D19V10, multiclass
        clus
vv       AMP PEAK 19(12P12.1) MUTATED AMP PEAK 19(12P12.1) WILD-TYPE
  CLUS_1                           34                            129
  CLUS_2                           48                             67
  CLUS_3                           55                             65

Clustering(20) Variable = Amp Peak 20(12q14.1) mutation analysis
D20V1, multiclass
        clus
vv       AMP PEAK 20(12Q14.1) MUTATED AMP PEAK 20(12Q14.1) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            4                              5
  CLUS_3                            2                             10
  CLUS_4                            3                              3
D20V2, multiclass
        clus
vv       AMP PEAK 20(12Q14.1) MUTATED AMP PEAK 20(12Q14.1) WILD-TYPE
  CLUS_1                            4                              3
  CLUS_2                            3                             10
  CLUS_3                            3                              9
D20V3, multiclass
        clus
vv       AMP PEAK 20(12Q14.1) MUTATED AMP PEAK 20(12Q14.1) WILD-TYPE
  CLUS_1                           29                            119
  CLUS_2                           32                            156
  CLUS_3                           68                             19
  CLUS_4                           19                             30
D20V4, multiclass
D20V5, multiclass
        clus
vv       AMP PEAK 20(12Q14.1) MUTATED AMP PEAK 20(12Q14.1) WILD-TYPE
  CLUS_1                           25                             60
  CLUS_2                           20                             55
  CLUS_3                           35                             40
D20V6, multiclass
        clus
vv       AMP PEAK 20(12Q14.1) MUTATED AMP PEAK 20(12Q14.1) WILD-TYPE
  CLUS_1                            5                             18
  CLUS_2                           28                             61
  CLUS_3                           33                             32
  CLUS_4                           14                             44
D20V7, multiclass
D20V8, multiclass
        clus
vv       AMP PEAK 20(12Q14.1) MUTATED AMP PEAK 20(12Q14.1) WILD-TYPE
  CLUS_1                           26                            126
  CLUS_2                           57                             48
  CLUS_3                           27                             68
D20V9, multiclass
        clus
vv       AMP PEAK 20(12Q14.1) MUTATED AMP PEAK 20(12Q14.1) WILD-TYPE
  CLUS_1                           26                            132
  CLUS_2                           83                            100
  CLUS_3                           14                             43
D20V10, multiclass
        clus
vv       AMP PEAK 20(12Q14.1) MUTATED AMP PEAK 20(12Q14.1) WILD-TYPE
  CLUS_1                           26                            137
  CLUS_2                           38                             77
  CLUS_3                           59                             61

Clustering(21) Variable = Amp Peak 21(12q15) mutation analysis
D21V1, multiclass
        clus
vv       AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  CLUS_1                          1                            4
  CLUS_2                          3                            6
  CLUS_3                          1                           11
  CLUS_4                          3                            3
D21V2, multiclass
        clus
vv       AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  CLUS_1                          4                            3
  CLUS_2                          2                           11
  CLUS_3                          2                           10
D21V3, multiclass
        clus
vv       AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  CLUS_1                         31                          117
  CLUS_2                         34                          154
  CLUS_3                         66                           21
  CLUS_4                         20                           29
D21V4, multiclass
D21V5, multiclass
        clus
vv       AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  CLUS_1                         30                           55
  CLUS_2                         17                           58
  CLUS_3                         34                           41
D21V6, multiclass
        clus
vv       AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  CLUS_1                          4                           19
  CLUS_2                         32                           57
  CLUS_3                         32                           33
  CLUS_4                         13                           45
D21V7, multiclass
D21V8, multiclass
        clus
vv       AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  CLUS_1                         32                          120
  CLUS_2                         56                           49
  CLUS_3                         25                           70
D21V9, multiclass
        clus
vv       AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  CLUS_1                         29                          129
  CLUS_2                         84                           99
  CLUS_3                         15                           42
D21V10, multiclass
        clus
vv       AMP PEAK 21(12Q15) MUTATED AMP PEAK 21(12Q15) WILD-TYPE
  CLUS_1                         30                          133
  CLUS_2                         34                           81
  CLUS_3                         64                           56

Clustering(22) Variable = Amp Peak 22(13q33.3) mutation analysis
D22V1, multiclass
        clus
vv       AMP PEAK 22(13Q33.3) MUTATED AMP PEAK 22(13Q33.3) WILD-TYPE
  CLUS_1                            0                              5
  CLUS_2                            0                              9
  CLUS_3                            4                              8
  CLUS_4                            1                              5
D22V2, multiclass
        clus
vv       AMP PEAK 22(13Q33.3) MUTATED AMP PEAK 22(13Q33.3) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            4                              9
  CLUS_3                            0                             12
D22V3, multiclass
        clus
vv       AMP PEAK 22(13Q33.3) MUTATED AMP PEAK 22(13Q33.3) WILD-TYPE
  CLUS_1                           27                            121
  CLUS_2                           25                            163
  CLUS_3                           15                             72
  CLUS_4                            5                             44
D22V4, multiclass
D22V5, multiclass
        clus
vv       AMP PEAK 22(13Q33.3) MUTATED AMP PEAK 22(13Q33.3) WILD-TYPE
  CLUS_1                           13                             72
  CLUS_2                            9                             66
  CLUS_3                           13                             62
D22V6, multiclass
        clus
vv       AMP PEAK 22(13Q33.3) MUTATED AMP PEAK 22(13Q33.3) WILD-TYPE
  CLUS_1                            1                             22
  CLUS_2                           14                             75
  CLUS_3                           13                             52
  CLUS_4                            7                             51
D22V7, multiclass
D22V8, multiclass
        clus
vv       AMP PEAK 22(13Q33.3) MUTATED AMP PEAK 22(13Q33.3) WILD-TYPE
  CLUS_1                           23                            129
  CLUS_2                           21                             84
  CLUS_3                           11                             84
D22V9, multiclass
        clus
vv       AMP PEAK 22(13Q33.3) MUTATED AMP PEAK 22(13Q33.3) WILD-TYPE
  CLUS_1                           20                            138
  CLUS_2                           34                            149
  CLUS_3                            7                             50
D22V10, multiclass
        clus
vv       AMP PEAK 22(13Q33.3) MUTATED AMP PEAK 22(13Q33.3) WILD-TYPE
  CLUS_1                           18                            145
  CLUS_2                           19                             96
  CLUS_3                           24                             96

Clustering(23) Variable = Amp Peak 23(14q13.3) mutation analysis
D23V1, multiclass
        clus
vv       AMP PEAK 23(14Q13.3) MUTATED AMP PEAK 23(14Q13.3) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            4                              5
  CLUS_3                            4                              8
  CLUS_4                            4                              2
D23V2, multiclass
        clus
vv       AMP PEAK 23(14Q13.3) MUTATED AMP PEAK 23(14Q13.3) WILD-TYPE
  CLUS_1                            5                              2
  CLUS_2                            4                              9
  CLUS_3                            6                              6
D23V3, multiclass
        clus
vv       AMP PEAK 23(14Q13.3) MUTATED AMP PEAK 23(14Q13.3) WILD-TYPE
  CLUS_1                           80                             68
  CLUS_2                           48                            140
  CLUS_3                           48                             39
  CLUS_4                           35                             14
D23V4, multiclass
D23V5, multiclass
        clus
vv       AMP PEAK 23(14Q13.3) MUTATED AMP PEAK 23(14Q13.3) WILD-TYPE
  CLUS_1                           29                             56
  CLUS_2                           28                             47
  CLUS_3                           45                             30
D23V6, multiclass
        clus
vv       AMP PEAK 23(14Q13.3) MUTATED AMP PEAK 23(14Q13.3) WILD-TYPE
  CLUS_1                            9                             14
  CLUS_2                           38                             51
  CLUS_3                           38                             27
  CLUS_4                           17                             41
D23V7, multiclass
D23V8, multiclass
        clus
vv       AMP PEAK 23(14Q13.3) MUTATED AMP PEAK 23(14Q13.3) WILD-TYPE
  CLUS_1                           47                            105
  CLUS_2                           58                             47
  CLUS_3                           51                             44
D23V9, multiclass
        clus
vv       AMP PEAK 23(14Q13.3) MUTATED AMP PEAK 23(14Q13.3) WILD-TYPE
  CLUS_1                           46                            112
  CLUS_2                          102                             81
  CLUS_3                           29                             28
D23V10, multiclass
        clus
vv       AMP PEAK 23(14Q13.3) MUTATED AMP PEAK 23(14Q13.3) WILD-TYPE
  CLUS_1                           45                            118
  CLUS_2                           55                             60
  CLUS_3                           77                             43

Clustering(24) Variable = Amp Peak 24(17q12) mutation analysis
D24V1, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                          3                            2
  CLUS_2                          6                            3
  CLUS_3                          3                            9
  CLUS_4                          4                            2
D24V2, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                          5                            2
  CLUS_2                          3                           10
  CLUS_3                          8                            4
D24V3, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         90                           58
  CLUS_2                         42                          146
  CLUS_3                         52                           35
  CLUS_4                         24                           25
D24V4, multiclass
D24V5, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         44                           41
  CLUS_2                         26                           49
  CLUS_3                         38                           37
D24V6, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                          3                           20
  CLUS_2                         52                           37
  CLUS_3                         33                           32
  CLUS_4                         20                           38
D24V7, multiclass
D24V8, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         44                          108
  CLUS_2                         52                           53
  CLUS_3                         62                           33
D24V9, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         48                          110
  CLUS_2                        105                           78
  CLUS_3                         25                           32
D24V10, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         47                          116
  CLUS_2                         57                           58
  CLUS_3                         74                           46

Clustering(25) Variable = Amp Peak 25(17q23.1) mutation analysis
D25V1, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            8                              1
  CLUS_3                            4                              8
  CLUS_4                            3                              3
D25V2, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                            4                              3
  CLUS_2                            5                              8
  CLUS_3                            9                              3
D25V3, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                          100                             48
  CLUS_2                           51                            137
  CLUS_3                           56                             31
  CLUS_4                           23                             26
D25V4, multiclass
D25V5, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                           47                             38
  CLUS_2                           24                             51
  CLUS_3                           44                             31
D25V6, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                            3                             20
  CLUS_2                           57                             32
  CLUS_3                           38                             27
  CLUS_4                           17                             41
D25V7, multiclass
D25V8, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                           46                            106
  CLUS_2                           54                             51
  CLUS_3                           69                             26
D25V9, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                           56                            102
  CLUS_2                          111                             72
  CLUS_3                           26                             31
D25V10, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                           55                            108
  CLUS_2                           67                             48
  CLUS_3                           71                             49

Clustering(26) Variable = Amp Peak 26(18q11.2) mutation analysis
D26V1, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            1                              8
  CLUS_3                            1                             11
  CLUS_4                            3                              3
D26V2, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                            4                              3
  CLUS_2                            1                             12
  CLUS_3                            1                             11
D26V3, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                           33                            115
  CLUS_2                           22                            166
  CLUS_3                           23                             64
  CLUS_4                           16                             33
D26V4, multiclass
D26V5, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                           13                             72
  CLUS_2                           11                             64
  CLUS_3                           22                             53
D26V6, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                            2                             21
  CLUS_2                            9                             80
  CLUS_3                           23                             42
  CLUS_4                           12                             46
D26V7, multiclass
D26V8, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                           21                            131
  CLUS_2                           33                             72
  CLUS_3                           19                             76
D26V9, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                           21                            137
  CLUS_2                           52                            131
  CLUS_3                           13                             44
D26V10, multiclass
        clus
vv       AMP PEAK 26(18Q11.2) MUTATED AMP PEAK 26(18Q11.2) WILD-TYPE
  CLUS_1                           19                            144
  CLUS_2                           22                             93
  CLUS_3                           45                             75

Clustering(27) Variable = Amp Peak 27(19q12) mutation analysis
D27V1, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                          1                            4
  CLUS_2                          4                            5
  CLUS_3                          0                           12
  CLUS_4                          2                            4
D27V2, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                          2                            5
  CLUS_2                          0                           13
  CLUS_3                          5                            7
D27V3, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         36                          112
  CLUS_2                         28                          160
  CLUS_3                         43                           44
  CLUS_4                         19                           30
D27V4, multiclass
D27V5, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         20                           65
  CLUS_2                         15                           60
  CLUS_3                         27                           48
D27V6, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                          5                           18
  CLUS_2                         21                           68
  CLUS_3                         25                           40
  CLUS_4                         11                           47
D27V7, multiclass
D27V8, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         24                          128
  CLUS_2                         42                           63
  CLUS_3                         30                           65
D27V9, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         23                          135
  CLUS_2                         72                          111
  CLUS_3                         15                           42
D27V10, multiclass
        clus
vv       AMP PEAK 27(19Q12) MUTATED AMP PEAK 27(19Q12) WILD-TYPE
  CLUS_1                         23                          140
  CLUS_2                         37                           78
  CLUS_3                         50                           70

Clustering(28) Variable = Amp Peak 28(20p11.21) mutation analysis
D28V1, multiclass
        clus
vv       AMP PEAK 28(20P11.21) MUTATED AMP PEAK 28(20P11.21) WILD-TYPE
  CLUS_1                             1                               4
  CLUS_2                             2                               7
  CLUS_3                             3                               9
  CLUS_4                             5                               1
D28V2, multiclass
        clus
vv       AMP PEAK 28(20P11.21) MUTATED AMP PEAK 28(20P11.21) WILD-TYPE
  CLUS_1                             5                               2
  CLUS_2                             3                              10
  CLUS_3                             3                               9
D28V3, multiclass
        clus
vv       AMP PEAK 28(20P11.21) MUTATED AMP PEAK 28(20P11.21) WILD-TYPE
  CLUS_1                            53                              95
  CLUS_2                            52                             136
  CLUS_3                            44                              43
  CLUS_4                            30                              19
D28V4, multiclass
D28V5, multiclass
        clus
vv       AMP PEAK 28(20P11.21) MUTATED AMP PEAK 28(20P11.21) WILD-TYPE
  CLUS_1                            34                              51
  CLUS_2                            25                              50
  CLUS_3                            34                              41
D28V6, multiclass
        clus
vv       AMP PEAK 28(20P11.21) MUTATED AMP PEAK 28(20P11.21) WILD-TYPE
  CLUS_1                             6                              17
  CLUS_2                            39                              50
  CLUS_3                            32                              33
  CLUS_4                            16                              42
D28V7, multiclass
D28V8, multiclass
        clus
vv       AMP PEAK 28(20P11.21) MUTATED AMP PEAK 28(20P11.21) WILD-TYPE
  CLUS_1                            46                             106
  CLUS_2                            53                              52
  CLUS_3                            36                              59
D28V9, multiclass
        clus
vv       AMP PEAK 28(20P11.21) MUTATED AMP PEAK 28(20P11.21) WILD-TYPE
  CLUS_1                            43                             115
  CLUS_2                            89                              94
  CLUS_3                            21                              36
D28V10, multiclass
        clus
vv       AMP PEAK 28(20P11.21) MUTATED AMP PEAK 28(20P11.21) WILD-TYPE
  CLUS_1                            43                             120
  CLUS_2                            47                              68
  CLUS_3                            63                              57

Clustering(29) Variable = Amp Peak 29(20q13.33) mutation analysis
D29V1, multiclass
        clus
vv       AMP PEAK 29(20Q13.33) MUTATED AMP PEAK 29(20Q13.33) WILD-TYPE
  CLUS_1                             2                               3
  CLUS_2                             5                               4
  CLUS_3                             2                              10
  CLUS_4                             6                               0
D29V2, multiclass
        clus
vv       AMP PEAK 29(20Q13.33) MUTATED AMP PEAK 29(20Q13.33) WILD-TYPE
  CLUS_1                             6                               1
  CLUS_2                             3                              10
  CLUS_3                             6                               6
D29V3, multiclass
        clus
vv       AMP PEAK 29(20Q13.33) MUTATED AMP PEAK 29(20Q13.33) WILD-TYPE
  CLUS_1                            77                              71
  CLUS_2                            61                             127
  CLUS_3                            52                              35
  CLUS_4                            35                              14
D29V4, multiclass
D29V5, multiclass
        clus
vv       AMP PEAK 29(20Q13.33) MUTATED AMP PEAK 29(20Q13.33) WILD-TYPE
  CLUS_1                            46                              39
  CLUS_2                            28                              47
  CLUS_3                            48                              27
D29V6, multiclass
        clus
vv       AMP PEAK 29(20Q13.33) MUTATED AMP PEAK 29(20Q13.33) WILD-TYPE
  CLUS_1                            10                              13
  CLUS_2                            54                              35
  CLUS_3                            39                              26
  CLUS_4                            19                              39
D29V7, multiclass
D29V8, multiclass
        clus
vv       AMP PEAK 29(20Q13.33) MUTATED AMP PEAK 29(20Q13.33) WILD-TYPE
  CLUS_1                            60                              92
  CLUS_2                            61                              44
  CLUS_3                            53                              42
D29V9, multiclass
        clus
vv       AMP PEAK 29(20Q13.33) MUTATED AMP PEAK 29(20Q13.33) WILD-TYPE
  CLUS_1                            54                             104
  CLUS_2                           110                              73
  CLUS_3                            27                              30
D29V10, multiclass
        clus
vv       AMP PEAK 29(20Q13.33) MUTATED AMP PEAK 29(20Q13.33) WILD-TYPE
  CLUS_1                            56                             107
  CLUS_2                            61                              54
  CLUS_3                            74                              46

Clustering(30) Variable = Amp Peak 30(22q11.22) mutation analysis
D30V1, multiclass
        clus
vv       AMP PEAK 30(22Q11.22) MUTATED AMP PEAK 30(22Q11.22) WILD-TYPE
  CLUS_1                             1                               4
  CLUS_2                             2                               7
  CLUS_3                             1                              11
  CLUS_4                             3                               3
D30V2, multiclass
        clus
vv       AMP PEAK 30(22Q11.22) MUTATED AMP PEAK 30(22Q11.22) WILD-TYPE
  CLUS_1                             3                               4
  CLUS_2                             1                              12
  CLUS_3                             3                               9
D30V3, multiclass
        clus
vv       AMP PEAK 30(22Q11.22) MUTATED AMP PEAK 30(22Q11.22) WILD-TYPE
  CLUS_1                            39                             109
  CLUS_2                            19                             169
  CLUS_3                            14                              73
  CLUS_4                             9                              40
D30V4, multiclass
D30V5, multiclass
        clus
vv       AMP PEAK 30(22Q11.22) MUTATED AMP PEAK 30(22Q11.22) WILD-TYPE
  CLUS_1                            21                              64
  CLUS_2                             7                              68
  CLUS_3                            17                              58
D30V6, multiclass
        clus
vv       AMP PEAK 30(22Q11.22) MUTATED AMP PEAK 30(22Q11.22) WILD-TYPE
  CLUS_1                             3                              20
  CLUS_2                            19                              70
  CLUS_3                            17                              48
  CLUS_4                             6                              52
D30V7, multiclass
D30V8, multiclass
        clus
vv       AMP PEAK 30(22Q11.22) MUTATED AMP PEAK 30(22Q11.22) WILD-TYPE
  CLUS_1                            20                             132
  CLUS_2                            22                              83
  CLUS_3                            17                              78
D30V9, multiclass
        clus
vv       AMP PEAK 30(22Q11.22) MUTATED AMP PEAK 30(22Q11.22) WILD-TYPE
  CLUS_1                            19                             139
  CLUS_2                            37                             146
  CLUS_3                            13                              44
D30V10, multiclass
        clus
vv       AMP PEAK 30(22Q11.22) MUTATED AMP PEAK 30(22Q11.22) WILD-TYPE
  CLUS_1                            21                             142
  CLUS_2                            21                              94
  CLUS_3                            27                              93

Clustering(31) Variable = Amp Peak 31(Xq28) mutation analysis
D31V1, multiclass
        clus
vv       AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE
  CLUS_1                         3                           2
  CLUS_2                         3                           6
  CLUS_3                         3                           9
  CLUS_4                         4                           2
D31V2, multiclass
        clus
vv       AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE
  CLUS_1                         5                           2
  CLUS_2                         3                          10
  CLUS_3                         5                           7
D31V3, multiclass
        clus
vv       AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE
  CLUS_1                        73                          75
  CLUS_2                        29                         159
  CLUS_3                        31                          56
  CLUS_4                        18                          31
D31V4, multiclass
D31V5, multiclass
        clus
vv       AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE
  CLUS_1                        30                          55
  CLUS_2                        18                          57
  CLUS_3                        34                          41
D31V6, multiclass
        clus
vv       AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE
  CLUS_1                         5                          18
  CLUS_2                        38                          51
  CLUS_3                        26                          39
  CLUS_4                        13                          45
D31V7, multiclass
D31V8, multiclass
        clus
vv       AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE
  CLUS_1                        37                         115
  CLUS_2                        40                          65
  CLUS_3                        42                          53
D31V9, multiclass
        clus
vv       AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE
  CLUS_1                        39                         119
  CLUS_2                        66                         117
  CLUS_3                        23                          34
D31V10, multiclass
        clus
vv       AMP PEAK 31(XQ28) MUTATED AMP PEAK 31(XQ28) WILD-TYPE
  CLUS_1                        41                         122
  CLUS_2                        45                          70
  CLUS_3                        42                          78

Clustering(32) Variable = Del Peak  1(1p36.13) mutation analysis
D32V1, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            3                              6
  CLUS_3                            2                             10
  CLUS_4                            2                              4
D32V2, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                            3                              4
  CLUS_2                            2                             11
  CLUS_3                            3                              9
D32V3, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           19                            129
  CLUS_2                           38                            150
  CLUS_3                           27                             60
  CLUS_4                           24                             25
D32V4, multiclass
D32V5, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           21                             64
  CLUS_2                           16                             59
  CLUS_3                           23                             52
D32V6, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                            5                             18
  CLUS_2                           18                             71
  CLUS_3                           21                             44
  CLUS_4                           16                             42
D32V7, multiclass
D32V8, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           21                            131
  CLUS_2                           38                             67
  CLUS_3                           22                             73
D32V9, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           27                            131
  CLUS_2                           57                            126
  CLUS_3                            5                             52
D32V10, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           28                            135
  CLUS_2                           22                             93
  CLUS_3                           39                             81

Clustering(33) Variable = Del Peak  2(1p13.3) mutation analysis
D33V1, multiclass
        clus
vv       DEL PEAK  2(1P13.3) MUTATED DEL PEAK  2(1P13.3) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                           3                             6
  CLUS_3                           4                             8
  CLUS_4                           3                             3
D33V2, multiclass
        clus
vv       DEL PEAK  2(1P13.3) MUTATED DEL PEAK  2(1P13.3) WILD-TYPE
  CLUS_1                           3                             4
  CLUS_2                           4                             9
  CLUS_3                           4                             8
D33V3, multiclass
        clus
vv       DEL PEAK  2(1P13.3) MUTATED DEL PEAK  2(1P13.3) WILD-TYPE
  CLUS_1                          29                           119
  CLUS_2                          46                           142
  CLUS_3                          37                            50
  CLUS_4                          27                            22
D33V4, multiclass
D33V5, multiclass
        clus
vv       DEL PEAK  2(1P13.3) MUTATED DEL PEAK  2(1P13.3) WILD-TYPE
  CLUS_1                          27                            58
  CLUS_2                          24                            51
  CLUS_3                          29                            46
D33V6, multiclass
        clus
vv       DEL PEAK  2(1P13.3) MUTATED DEL PEAK  2(1P13.3) WILD-TYPE
  CLUS_1                           7                            16
  CLUS_2                          27                            62
  CLUS_3                          25                            40
  CLUS_4                          21                            37
D33V7, multiclass
D33V8, multiclass
        clus
vv       DEL PEAK  2(1P13.3) MUTATED DEL PEAK  2(1P13.3) WILD-TYPE
  CLUS_1                          42                           110
  CLUS_2                          46                            59
  CLUS_3                          23                            72
D33V9, multiclass
        clus
vv       DEL PEAK  2(1P13.3) MUTATED DEL PEAK  2(1P13.3) WILD-TYPE
  CLUS_1                          38                           120
  CLUS_2                          67                           116
  CLUS_3                          15                            42
D33V10, multiclass
        clus
vv       DEL PEAK  2(1P13.3) MUTATED DEL PEAK  2(1P13.3) WILD-TYPE
  CLUS_1                          38                           125
  CLUS_2                          37                            78
  CLUS_3                          45                            75

Clustering(34) Variable = Del Peak  3(1p13.1) mutation analysis
D34V1, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                           3                             6
  CLUS_3                           3                             9
  CLUS_4                           3                             3
D34V2, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                           3                             4
  CLUS_2                           3                            10
  CLUS_3                           4                             8
D34V3, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          31                           117
  CLUS_2                          42                           146
  CLUS_3                          40                            47
  CLUS_4                          24                            25
D34V4, multiclass
D34V5, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          23                            62
  CLUS_2                          21                            54
  CLUS_3                          31                            44
D34V6, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                           6                            17
  CLUS_2                          25                            64
  CLUS_3                          25                            40
  CLUS_4                          19                            39
D34V7, multiclass
D34V8, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          39                           113
  CLUS_2                          45                            60
  CLUS_3                          24                            71
D34V9, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          35                           123
  CLUS_2                          66                           117
  CLUS_3                          17                            40
D34V10, multiclass
        clus
vv       DEL PEAK  3(1P13.1) MUTATED DEL PEAK  3(1P13.1) WILD-TYPE
  CLUS_1                          37                           126
  CLUS_2                          37                            78
  CLUS_3                          44                            76

Clustering(35) Variable = Del Peak  4(2q22.1) mutation analysis
D35V1, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                             5
  CLUS_2                           1                             8
  CLUS_3                           2                            10
  CLUS_4                           0                             6
D35V2, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           0                             7
  CLUS_2                           2                            11
  CLUS_3                           1                            11
D35V3, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          18                           130
  CLUS_2                           8                           180
  CLUS_3                          12                            75
  CLUS_4                           9                            40
D35V4, multiclass
D35V5, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           6                            79
  CLUS_2                           5                            70
  CLUS_3                          14                            61
D35V6, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           1                            22
  CLUS_2                          11                            78
  CLUS_3                           9                            56
  CLUS_4                           4                            54
D35V7, multiclass
D35V8, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           8                           144
  CLUS_2                          20                            85
  CLUS_3                          10                            85
D35V9, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                           9                           149
  CLUS_2                          23                           160
  CLUS_3                           8                            49
D35V10, multiclass
        clus
vv       DEL PEAK  4(2Q22.1) MUTATED DEL PEAK  4(2Q22.1) WILD-TYPE
  CLUS_1                          11                           152
  CLUS_2                          12                           103
  CLUS_3                          17                           103

Clustering(36) Variable = Del Peak  5(2q37.3) mutation analysis
D36V1, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                           3                             6
  CLUS_3                           3                             9
  CLUS_4                           3                             3
D36V2, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           4                             3
  CLUS_2                           4                             9
  CLUS_3                           2                            10
D36V3, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          30                           118
  CLUS_2                          12                           176
  CLUS_3                          10                            77
  CLUS_4                          11                            38
D36V4, multiclass
D36V5, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          15                            70
  CLUS_2                           7                            68
  CLUS_3                          14                            61
D36V6, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                           4                            19
  CLUS_2                          18                            71
  CLUS_3                          10                            55
  CLUS_4                           4                            54
D36V7, multiclass
D36V8, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          13                           139
  CLUS_2                          19                            86
  CLUS_3                          23                            72
D36V9, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          13                           145
  CLUS_2                          38                           145
  CLUS_3                           8                            49
D36V10, multiclass
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  CLUS_1                          12                           151
  CLUS_2                          24                            91
  CLUS_3                          23                            97

Clustering(37) Variable = Del Peak  6(3p21.31) mutation analysis
D37V1, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            6                              3
  CLUS_3                            3                              9
  CLUS_4                            4                              2
D37V2, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                            4                              3
  CLUS_2                            4                              9
  CLUS_3                            6                              6
D37V3, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           77                             71
  CLUS_2                           65                            123
  CLUS_3                           53                             34
  CLUS_4                           32                             17
D37V4, multiclass
D37V5, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           39                             46
  CLUS_2                           33                             42
  CLUS_3                           47                             28
D37V6, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           11                             12
  CLUS_2                           48                             41
  CLUS_3                           41                             24
  CLUS_4                           19                             39
D37V7, multiclass
D37V8, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           49                            103
  CLUS_2                           75                             30
  CLUS_3                           47                             48
D37V9, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           52                            106
  CLUS_2                          106                             77
  CLUS_3                           32                             25
D37V10, multiclass
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  CLUS_1                           55                            108
  CLUS_2                           59                             56
  CLUS_3                           76                             44

Clustering(38) Variable = Del Peak  7(3q11.1) mutation analysis
D38V1, multiclass
        clus
vv       DEL PEAK  7(3Q11.1) MUTATED DEL PEAK  7(3Q11.1) WILD-TYPE
  CLUS_1                           0                             5
  CLUS_2                           1                             8
  CLUS_3                           2                            10
  CLUS_4                           2                             4
D38V2, multiclass
        clus
vv       DEL PEAK  7(3Q11.1) MUTATED DEL PEAK  7(3Q11.1) WILD-TYPE
  CLUS_1                           2                             5
  CLUS_2                           2                            11
  CLUS_3                           1                            11
D38V3, multiclass
        clus
vv       DEL PEAK  7(3Q11.1) MUTATED DEL PEAK  7(3Q11.1) WILD-TYPE
  CLUS_1                          43                           105
  CLUS_2                          45                           143
  CLUS_3                          23                            64
  CLUS_4                          22                            27
D38V4, multiclass
D38V5, multiclass
        clus
vv       DEL PEAK  7(3Q11.1) MUTATED DEL PEAK  7(3Q11.1) WILD-TYPE
  CLUS_1                          20                            65
  CLUS_2                          25                            50
  CLUS_3                          23                            52
D38V6, multiclass
        clus
vv       DEL PEAK  7(3Q11.1) MUTATED DEL PEAK  7(3Q11.1) WILD-TYPE
  CLUS_1                          10                            13
  CLUS_2                          21                            68
  CLUS_3                          20                            45
  CLUS_4                          17                            41
D38V7, multiclass
D38V8, multiclass
        clus
vv       DEL PEAK  7(3Q11.1) MUTATED DEL PEAK  7(3Q11.1) WILD-TYPE
  CLUS_1                          37                           115
  CLUS_2                          41                            64
  CLUS_3                          24                            71
D38V9, multiclass
        clus
vv       DEL PEAK  7(3Q11.1) MUTATED DEL PEAK  7(3Q11.1) WILD-TYPE
  CLUS_1                          44                           114
  CLUS_2                          53                           130
  CLUS_3                          18                            39
D38V10, multiclass
        clus
vv       DEL PEAK  7(3Q11.1) MUTATED DEL PEAK  7(3Q11.1) WILD-TYPE
  CLUS_1                          45                           118
  CLUS_2                          32                            83
  CLUS_3                          38                            82

Clustering(39) Variable = Del Peak  8(3q29) mutation analysis
D39V1, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         0                           5
  CLUS_2                         2                           7
  CLUS_3                         2                          10
  CLUS_4                         2                           4
D39V2, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                         2                           5
  CLUS_2                         3                          10
  CLUS_3                         1                          11
D39V3, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        38                         110
  CLUS_2                        46                         142
  CLUS_3                        25                          62
  CLUS_4                        20                          29
D39V4, multiclass
D39V5, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        17                          68
  CLUS_2                        31                          44
  CLUS_3                        16                          59
D39V6, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        12                          11
  CLUS_2                        17                          72
  CLUS_3                        17                          48
  CLUS_4                        18                          40
D39V7, multiclass
D39V8, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        40                         112
  CLUS_2                        38                          67
  CLUS_3                        21                          74
D39V9, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        44                         114
  CLUS_2                        54                         129
  CLUS_3                        13                          44
D39V10, multiclass
        clus
vv       DEL PEAK  8(3Q29) MUTATED DEL PEAK  8(3Q29) WILD-TYPE
  CLUS_1                        45                         118
  CLUS_2                        23                          92
  CLUS_3                        43                          77

Clustering(40) Variable = Del Peak  9(4p16.3) mutation analysis
D40V1, multiclass
        clus
vv       DEL PEAK  9(4P16.3) MUTATED DEL PEAK  9(4P16.3) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                           2                             7
  CLUS_3                           1                            11
  CLUS_4                           2                             4
D40V2, multiclass
        clus
vv       DEL PEAK  9(4P16.3) MUTATED DEL PEAK  9(4P16.3) WILD-TYPE
  CLUS_1                           2                             5
  CLUS_2                           1                            12
  CLUS_3                           3                             9
D40V3, multiclass
        clus
vv       DEL PEAK  9(4P16.3) MUTATED DEL PEAK  9(4P16.3) WILD-TYPE
  CLUS_1                          37                           111
  CLUS_2                          28                           160
  CLUS_3                          28                            59
  CLUS_4                          23                            26
D40V4, multiclass
D40V5, multiclass
        clus
vv       DEL PEAK  9(4P16.3) MUTATED DEL PEAK  9(4P16.3) WILD-TYPE
  CLUS_1                          20                            65
  CLUS_2                          16                            59
  CLUS_3                          30                            45
D40V6, multiclass
        clus
vv       DEL PEAK  9(4P16.3) MUTATED DEL PEAK  9(4P16.3) WILD-TYPE
  CLUS_1                           6                            17
  CLUS_2                          20                            69
  CLUS_3                          27                            38
  CLUS_4                          13                            45
D40V7, multiclass
D40V8, multiclass
        clus
vv       DEL PEAK  9(4P16.3) MUTATED DEL PEAK  9(4P16.3) WILD-TYPE
  CLUS_1                          21                           131
  CLUS_2                          46                            59
  CLUS_3                          20                            75
D40V9, multiclass
        clus
vv       DEL PEAK  9(4P16.3) MUTATED DEL PEAK  9(4P16.3) WILD-TYPE
  CLUS_1                          19                           139
  CLUS_2                          67                           116
  CLUS_3                          14                            43
D40V10, multiclass
        clus
vv       DEL PEAK  9(4P16.3) MUTATED DEL PEAK  9(4P16.3) WILD-TYPE
  CLUS_1                          20                           143
  CLUS_2                          29                            86
  CLUS_3                          51                            69

Clustering(41) Variable = Del Peak 10(4q22.1) mutation analysis
D41V1, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           3                             2
  CLUS_2                           1                             8
  CLUS_3                           0                            12
  CLUS_4                           5                             1
D41V2, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           6                             1
  CLUS_2                           0                            13
  CLUS_3                           3                             9
D41V3, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          48                           100
  CLUS_2                          32                           156
  CLUS_3                          42                            45
  CLUS_4                          20                            29
D41V4, multiclass
D41V5, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          26                            59
  CLUS_2                          19                            56
  CLUS_3                          30                            45
D41V6, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                           9                            14
  CLUS_2                          27                            62
  CLUS_3                          28                            37
  CLUS_4                          11                            47
D41V7, multiclass
D41V8, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          23                           129
  CLUS_2                          60                            45
  CLUS_3                          23                            72
D41V9, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          25                           133
  CLUS_2                          77                           106
  CLUS_3                          16                            41
D41V10, multiclass
        clus
vv       DEL PEAK 10(4Q22.1) MUTATED DEL PEAK 10(4Q22.1) WILD-TYPE
  CLUS_1                          25                           138
  CLUS_2                          35                            80
  CLUS_3                          58                            62

Clustering(42) Variable = Del Peak 11(4q35.1) mutation analysis
D42V1, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                           3                             2
  CLUS_2                           1                             8
  CLUS_3                           1                            11
  CLUS_4                           5                             1
D42V2, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                           6                             1
  CLUS_2                           1                            12
  CLUS_3                           3                             9
D42V3, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          58                            90
  CLUS_2                          38                           150
  CLUS_3                          50                            37
  CLUS_4                          26                            23
D42V4, multiclass
D42V5, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          32                            53
  CLUS_2                          24                            51
  CLUS_3                          39                            36
D42V6, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          11                            12
  CLUS_2                          32                            57
  CLUS_3                          39                            26
  CLUS_4                          13                            45
D42V7, multiclass
D42V8, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          28                           124
  CLUS_2                          73                            32
  CLUS_3                          26                            69
D42V9, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          34                           124
  CLUS_2                          94                            89
  CLUS_3                          14                            43
D42V10, multiclass
        clus
vv       DEL PEAK 11(4Q35.1) MUTATED DEL PEAK 11(4Q35.1) WILD-TYPE
  CLUS_1                          31                           132
  CLUS_2                          34                            81
  CLUS_3                          77                            43

Clustering(43) Variable = Del Peak 12(5q11.2) mutation analysis
D43V1, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                           4                             5
  CLUS_3                           4                             8
  CLUS_4                           5                             1
D43V2, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                           5                             2
  CLUS_2                           4                             9
  CLUS_3                           6                             6
D43V3, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                          70                            78
  CLUS_2                          29                           159
  CLUS_3                          44                            43
  CLUS_4                          23                            26
D43V4, multiclass
D43V5, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                          37                            48
  CLUS_2                          16                            59
  CLUS_3                          32                            43
D43V6, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                           6                            17
  CLUS_2                          40                            49
  CLUS_3                          27                            38
  CLUS_4                          12                            46
D43V7, multiclass
D43V8, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                          30                           122
  CLUS_2                          56                            49
  CLUS_3                          38                            57
D43V9, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                          34                           124
  CLUS_2                          90                            93
  CLUS_3                          18                            39
D43V10, multiclass
        clus
vv       DEL PEAK 12(5Q11.2) MUTATED DEL PEAK 12(5Q11.2) WILD-TYPE
  CLUS_1                          34                           129
  CLUS_2                          44                            71
  CLUS_3                          64                            56

Clustering(44) Variable = Del Peak 13(5q22.1) mutation analysis
D44V1, multiclass
        clus
vv       DEL PEAK 13(5Q22.1) MUTATED DEL PEAK 13(5Q22.1) WILD-TYPE
  CLUS_1                           1                             4
  CLUS_2                           3                             6
  CLUS_3                           2                            10
  CLUS_4                           5                             1
D44V2, multiclass
        clus
vv       DEL PEAK 13(5Q22.1) MUTATED DEL PEAK 13(5Q22.1) WILD-TYPE
  CLUS_1                           5                             2
  CLUS_2                           2                            11
  CLUS_3                           4                             8
D44V3, multiclass
        clus
vv       DEL PEAK 13(5Q22.1) MUTATED DEL PEAK 13(5Q22.1) WILD-TYPE
  CLUS_1                          75                            73
  CLUS_2                          37                           151
  CLUS_3                          52                            35
  CLUS_4                          25                            24
D44V4, multiclass
D44V5, multiclass
        clus
vv       DEL PEAK 13(5Q22.1) MUTATED DEL PEAK 13(5Q22.1) WILD-TYPE
  CLUS_1                          40                            45
  CLUS_2                          19                            56
  CLUS_3                          39                            36
D44V6, multiclass
        clus
vv       DEL PEAK 13(5Q22.1) MUTATED DEL PEAK 13(5Q22.1) WILD-TYPE
  CLUS_1                           6                            17
  CLUS_2                          42                            47
  CLUS_3                          35                            30
  CLUS_4                          15                            43
D44V7, multiclass
D44V8, multiclass
        clus
vv       DEL PEAK 13(5Q22.1) MUTATED DEL PEAK 13(5Q22.1) WILD-TYPE
  CLUS_1                          37                           115
  CLUS_2                          63                            42
  CLUS_3                          44                            51
D44V9, multiclass
        clus
vv       DEL PEAK 13(5Q22.1) MUTATED DEL PEAK 13(5Q22.1) WILD-TYPE
  CLUS_1                          39                           119
  CLUS_2                         106                            77
  CLUS_3                          19                            38
D44V10, multiclass
        clus
vv       DEL PEAK 13(5Q22.1) MUTATED DEL PEAK 13(5Q22.1) WILD-TYPE
  CLUS_1                          38                           125
  CLUS_2                          55                            60
  CLUS_3                          71                            49

Clustering(45) Variable = Del Peak 14(6q12) mutation analysis
D45V1, multiclass
        clus
vv       DEL PEAK 14(6Q12) MUTATED DEL PEAK 14(6Q12) WILD-TYPE
  CLUS_1                         3                           2
  CLUS_2                         3                           6
  CLUS_3                         3                           9
  CLUS_4                         1                           5
D45V2, multiclass
        clus
vv       DEL PEAK 14(6Q12) MUTATED DEL PEAK 14(6Q12) WILD-TYPE
  CLUS_1                         2                           5
  CLUS_2                         4                           9
  CLUS_3                         4                           8
D45V3, multiclass
        clus
vv       DEL PEAK 14(6Q12) MUTATED DEL PEAK 14(6Q12) WILD-TYPE
  CLUS_1                        55                          93
  CLUS_2                        53                         135
  CLUS_3                        27                          60
  CLUS_4                        23                          26
D45V4, multiclass
D45V5, multiclass
        clus
vv       DEL PEAK 14(6Q12) MUTATED DEL PEAK 14(6Q12) WILD-TYPE
  CLUS_1                        26                          59
  CLUS_2                        22                          53
  CLUS_3                        31                          44
D45V6, multiclass
        clus
vv       DEL PEAK 14(6Q12) MUTATED DEL PEAK 14(6Q12) WILD-TYPE
  CLUS_1                         3                          20
  CLUS_2                        32                          57
  CLUS_3                        24                          41
  CLUS_4                        20                          38
D45V7, multiclass
D45V8, multiclass
        clus
vv       DEL PEAK 14(6Q12) MUTATED DEL PEAK 14(6Q12) WILD-TYPE
  CLUS_1                        54                          98
  CLUS_2                        35                          70
  CLUS_3                        34                          61
D45V9, multiclass
        clus
vv       DEL PEAK 14(6Q12) MUTATED DEL PEAK 14(6Q12) WILD-TYPE
  CLUS_1                        46                         112
  CLUS_2                        65                         118
  CLUS_3                        24                          33
D45V10, multiclass
        clus
vv       DEL PEAK 14(6Q12) MUTATED DEL PEAK 14(6Q12) WILD-TYPE
  CLUS_1                        49                         114
  CLUS_2                        53                          62
  CLUS_3                        33                          87

Clustering(46) Variable = Del Peak 15(6q22.31) mutation analysis
D46V1, multiclass
        clus
vv       DEL PEAK 15(6Q22.31) MUTATED DEL PEAK 15(6Q22.31) WILD-TYPE
  CLUS_1                            3                              2
  CLUS_2                            4                              5
  CLUS_3                            6                              6
  CLUS_4                            5                              1
D46V2, multiclass
        clus
vv       DEL PEAK 15(6Q22.31) MUTATED DEL PEAK 15(6Q22.31) WILD-TYPE
  CLUS_1                            6                              1
  CLUS_2                            7                              6
  CLUS_3                            5                              7
D46V3, multiclass
        clus
vv       DEL PEAK 15(6Q22.31) MUTATED DEL PEAK 15(6Q22.31) WILD-TYPE
  CLUS_1                           82                             66
  CLUS_2                           78                            110
  CLUS_3                           44                             43
  CLUS_4                           30                             19
D46V4, multiclass
D46V5, multiclass
        clus
vv       DEL PEAK 15(6Q22.31) MUTATED DEL PEAK 15(6Q22.31) WILD-TYPE
  CLUS_1                           37                             48
  CLUS_2                           41                             34
  CLUS_3                           40                             35
D46V6, multiclass
        clus
vv       DEL PEAK 15(6Q22.31) MUTATED DEL PEAK 15(6Q22.31) WILD-TYPE
  CLUS_1                            7                             16
  CLUS_2                           40                             49
  CLUS_3                           36                             29
  CLUS_4                           35                             23
D46V7, multiclass
D46V8, multiclass
        clus
vv       DEL PEAK 15(6Q22.31) MUTATED DEL PEAK 15(6Q22.31) WILD-TYPE
  CLUS_1                           77                             75
  CLUS_2                           53                             52
  CLUS_3                           49                             46
D46V9, multiclass
        clus
vv       DEL PEAK 15(6Q22.31) MUTATED DEL PEAK 15(6Q22.31) WILD-TYPE
  CLUS_1                           74                             84
  CLUS_2                           98                             85
  CLUS_3                           26                             31
D46V10, multiclass
        clus
vv       DEL PEAK 15(6Q22.31) MUTATED DEL PEAK 15(6Q22.31) WILD-TYPE
  CLUS_1                           80                             83
  CLUS_2                           62                             53
  CLUS_3                           56                             64

Clustering(47) Variable = Del Peak 16(6q26) mutation analysis
D47V1, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                         3                           2
  CLUS_2                         6                           3
  CLUS_3                         5                           7
  CLUS_4                         5                           1
D47V2, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                         6                           1
  CLUS_2                         6                           7
  CLUS_3                         7                           5
D47V3, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        81                          67
  CLUS_2                        79                         109
  CLUS_3                        46                          41
  CLUS_4                        32                          17
D47V4, multiclass
D47V5, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        36                          49
  CLUS_2                        41                          34
  CLUS_3                        42                          33
D47V6, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                         5                          18
  CLUS_2                        42                          47
  CLUS_3                        37                          28
  CLUS_4                        35                          23
D47V7, multiclass
D47V8, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        75                          77
  CLUS_2                        57                          48
  CLUS_3                        52                          43
D47V9, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        73                          85
  CLUS_2                       102                          81
  CLUS_3                        27                          30
D47V10, multiclass
        clus
vv       DEL PEAK 16(6Q26) MUTATED DEL PEAK 16(6Q26) WILD-TYPE
  CLUS_1                        77                          86
  CLUS_2                        68                          47
  CLUS_3                        57                          63

Clustering(48) Variable = Del Peak 17(8p23.2) mutation analysis
D48V1, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                           4                             1
  CLUS_2                           7                             2
  CLUS_3                           3                             9
  CLUS_4                           6                             0
D48V2, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                           7                             0
  CLUS_2                           4                             9
  CLUS_3                           9                             3
D48V3, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                         107                            41
  CLUS_2                          49                           139
  CLUS_3                          51                            36
  CLUS_4                          22                            27
D48V4, multiclass
D48V5, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                          46                            39
  CLUS_2                          27                            48
  CLUS_3                          43                            32
D48V6, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                          10                            13
  CLUS_2                          56                            33
  CLUS_3                          34                            31
  CLUS_4                          16                            42
D48V7, multiclass
D48V8, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                          54                            98
  CLUS_2                          53                            52
  CLUS_3                          68                            27
D48V9, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                          61                            97
  CLUS_2                         102                            81
  CLUS_3                          31                            26
D48V10, multiclass
        clus
vv       DEL PEAK 17(8P23.2) MUTATED DEL PEAK 17(8P23.2) WILD-TYPE
  CLUS_1                          57                           106
  CLUS_2                          76                            39
  CLUS_3                          61                            59

Clustering(49) Variable = Del Peak 18(8p12) mutation analysis
D49V1, multiclass
        clus
vv       DEL PEAK 18(8P12) MUTATED DEL PEAK 18(8P12) WILD-TYPE
  CLUS_1                         4                           1
  CLUS_2                         6                           3
  CLUS_3                         3                           9
  CLUS_4                         4                           2
D49V2, multiclass
        clus
vv       DEL PEAK 18(8P12) MUTATED DEL PEAK 18(8P12) WILD-TYPE
  CLUS_1                         5                           2
  CLUS_2                         4                           9
  CLUS_3                         8                           4
D49V3, multiclass
        clus
vv       DEL PEAK 18(8P12) MUTATED DEL PEAK 18(8P12) WILD-TYPE
  CLUS_1                       101                          47
  CLUS_2                        45                         143
  CLUS_3                        43                          44
  CLUS_4                        16                          33
D49V4, multiclass
D49V5, multiclass
        clus
vv       DEL PEAK 18(8P12) MUTATED DEL PEAK 18(8P12) WILD-TYPE
  CLUS_1                        41                          44
  CLUS_2                        24                          51
  CLUS_3                        38                          37
D49V6, multiclass
        clus
vv       DEL PEAK 18(8P12) MUTATED DEL PEAK 18(8P12) WILD-TYPE
  CLUS_1                         9                          14
  CLUS_2                        46                          43
  CLUS_3                        32                          33
  CLUS_4                        16                          42
D49V7, multiclass
D49V8, multiclass
        clus
vv       DEL PEAK 18(8P12) MUTATED DEL PEAK 18(8P12) WILD-TYPE
  CLUS_1                        50                         102
  CLUS_2                        44                          61
  CLUS_3                        61                          34
D49V9, multiclass
        clus
vv       DEL PEAK 18(8P12) MUTATED DEL PEAK 18(8P12) WILD-TYPE
  CLUS_1                        54                         104
  CLUS_2                        95                          88
  CLUS_3                        25                          32
D49V10, multiclass
        clus
vv       DEL PEAK 18(8P12) MUTATED DEL PEAK 18(8P12) WILD-TYPE
  CLUS_1                        49                         114
  CLUS_2                        67                          48
  CLUS_3                        58                          62

Clustering(50) Variable = Del Peak 19(8p11.21) mutation analysis
D50V1, multiclass
        clus
vv       DEL PEAK 19(8P11.21) MUTATED DEL PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            3                              6
  CLUS_3                            2                             10
  CLUS_4                            2                              4
D50V2, multiclass
        clus
vv       DEL PEAK 19(8P11.21) MUTATED DEL PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                            3                              4
  CLUS_2                            3                             10
  CLUS_3                            2                             10
D50V3, multiclass
        clus
vv       DEL PEAK 19(8P11.21) MUTATED DEL PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           59                             89
  CLUS_2                           27                            161
  CLUS_3                           21                             66
  CLUS_4                            0                             49
D50V4, multiclass
D50V5, multiclass
        clus
vv       DEL PEAK 19(8P11.21) MUTATED DEL PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           21                             64
  CLUS_2                           15                             60
  CLUS_3                           15                             60
D50V6, multiclass
        clus
vv       DEL PEAK 19(8P11.21) MUTATED DEL PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                            5                             18
  CLUS_2                           25                             64
  CLUS_3                           11                             54
  CLUS_4                           10                             48
D50V7, multiclass
D50V8, multiclass
        clus
vv       DEL PEAK 19(8P11.21) MUTATED DEL PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           28                            124
  CLUS_2                           20                             85
  CLUS_3                           28                             67
D50V9, multiclass
        clus
vv       DEL PEAK 19(8P11.21) MUTATED DEL PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           30                            128
  CLUS_2                           38                            145
  CLUS_3                           16                             41
D50V10, multiclass
        clus
vv       DEL PEAK 19(8P11.21) MUTATED DEL PEAK 19(8P11.21) WILD-TYPE
  CLUS_1                           26                            137
  CLUS_2                           33                             82
  CLUS_3                           25                             95

Clustering(51) Variable = Del Peak 20(8q11.21) mutation analysis
D51V1, multiclass
        clus
vv       DEL PEAK 20(8Q11.21) MUTATED DEL PEAK 20(8Q11.21) WILD-TYPE
  CLUS_1                            0                              5
  CLUS_2                            1                              8
  CLUS_3                            1                             11
  CLUS_4                            1                              5
D51V2, multiclass
        clus
vv       DEL PEAK 20(8Q11.21) MUTATED DEL PEAK 20(8Q11.21) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            1                             12
  CLUS_3                            1                             11
D51V3, multiclass
        clus
vv       DEL PEAK 20(8Q11.21) MUTATED DEL PEAK 20(8Q11.21) WILD-TYPE
  CLUS_1                           20                            128
  CLUS_2                           23                            165
  CLUS_3                           12                             75
  CLUS_4                            4                             45
D51V4, multiclass
D51V5, multiclass
        clus
vv       DEL PEAK 20(8Q11.21) MUTATED DEL PEAK 20(8Q11.21) WILD-TYPE
  CLUS_1                           13                             72
  CLUS_2                            7                             68
  CLUS_3                           10                             65
D51V6, multiclass
        clus
vv       DEL PEAK 20(8Q11.21) MUTATED DEL PEAK 20(8Q11.21) WILD-TYPE
  CLUS_1                            3                             20
  CLUS_2                           14                             75
  CLUS_3                            8                             57
  CLUS_4                            5                             53
D51V7, multiclass
D51V8, multiclass
        clus
vv       DEL PEAK 20(8Q11.21) MUTATED DEL PEAK 20(8Q11.21) WILD-TYPE
  CLUS_1                           15                            137
  CLUS_2                           15                             90
  CLUS_3                           13                             82
D51V9, multiclass
        clus
vv       DEL PEAK 20(8Q11.21) MUTATED DEL PEAK 20(8Q11.21) WILD-TYPE
  CLUS_1                           15                            143
  CLUS_2                           21                            162
  CLUS_3                           10                             47
D51V10, multiclass
        clus
vv       DEL PEAK 20(8Q11.21) MUTATED DEL PEAK 20(8Q11.21) WILD-TYPE
  CLUS_1                           14                            149
  CLUS_2                           13                            102
  CLUS_3                           19                            101

Clustering(52) Variable = Del Peak 21(9p23) mutation analysis
D52V1, multiclass
        clus
vv       DEL PEAK 21(9P23) MUTATED DEL PEAK 21(9P23) WILD-TYPE
  CLUS_1                         2                           3
  CLUS_2                         5                           4
  CLUS_3                         8                           4
  CLUS_4                         5                           1
D52V2, multiclass
        clus
vv       DEL PEAK 21(9P23) MUTATED DEL PEAK 21(9P23) WILD-TYPE
  CLUS_1                         5                           2
  CLUS_2                         8                           5
  CLUS_3                         7                           5
D52V3, multiclass
        clus
vv       DEL PEAK 21(9P23) MUTATED DEL PEAK 21(9P23) WILD-TYPE
  CLUS_1                        88                          60
  CLUS_2                        85                         103
  CLUS_3                        67                          20
  CLUS_4                        18                          31
D52V4, multiclass
D52V5, multiclass
        clus
vv       DEL PEAK 21(9P23) MUTATED DEL PEAK 21(9P23) WILD-TYPE
  CLUS_1                        46                          39
  CLUS_2                        37                          38
  CLUS_3                        43                          32
D52V6, multiclass
        clus
vv       DEL PEAK 21(9P23) MUTATED DEL PEAK 21(9P23) WILD-TYPE
  CLUS_1                        13                          10
  CLUS_2                        48                          41
  CLUS_3                        38                          27
  CLUS_4                        27                          31
D52V7, multiclass
D52V8, multiclass
        clus
vv       DEL PEAK 21(9P23) MUTATED DEL PEAK 21(9P23) WILD-TYPE
  CLUS_1                        77                          75
  CLUS_2                        70                          35
  CLUS_3                        48                          47
D52V9, multiclass
        clus
vv       DEL PEAK 21(9P23) MUTATED DEL PEAK 21(9P23) WILD-TYPE
  CLUS_1                        85                          73
  CLUS_2                       101                          82
  CLUS_3                        36                          21
D52V10, multiclass
        clus
vv       DEL PEAK 21(9P23) MUTATED DEL PEAK 21(9P23) WILD-TYPE
  CLUS_1                        82                          81
  CLUS_2                        66                          49
  CLUS_3                        74                          46

Clustering(53) Variable = Del Peak 22(9p21.3) mutation analysis
D53V1, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                           5                             4
  CLUS_3                           8                             4
  CLUS_4                           5                             1
D53V2, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                           5                             2
  CLUS_2                           8                             5
  CLUS_3                           7                             5
D53V3, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          91                            57
  CLUS_2                          89                            99
  CLUS_3                          66                            21
  CLUS_4                          18                            31
D53V4, multiclass
D53V5, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          51                            34
  CLUS_2                          37                            38
  CLUS_3                          45                            30
D53V6, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          11                            12
  CLUS_2                          53                            36
  CLUS_3                          41                            24
  CLUS_4                          28                            30
D53V7, multiclass
D53V8, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          80                            72
  CLUS_2                          73                            32
  CLUS_3                          50                            45
D53V9, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          90                            68
  CLUS_2                         104                            79
  CLUS_3                          35                            22
D53V10, multiclass
        clus
vv       DEL PEAK 22(9P21.3) MUTATED DEL PEAK 22(9P21.3) WILD-TYPE
  CLUS_1                          86                            77
  CLUS_2                          67                            48
  CLUS_3                          76                            44

Clustering(54) Variable = Del Peak 23(9q21.11) mutation analysis
D54V1, multiclass
        clus
vv       DEL PEAK 23(9Q21.11) MUTATED DEL PEAK 23(9Q21.11) WILD-TYPE
  CLUS_1                            0                              5
  CLUS_2                            6                              3
  CLUS_3                            6                              6
  CLUS_4                            5                              1
D54V2, multiclass
        clus
vv       DEL PEAK 23(9Q21.11) MUTATED DEL PEAK 23(9Q21.11) WILD-TYPE
  CLUS_1                            5                              2
  CLUS_2                            6                              7
  CLUS_3                            6                              6
D54V3, multiclass
        clus
vv       DEL PEAK 23(9Q21.11) MUTATED DEL PEAK 23(9Q21.11) WILD-TYPE
  CLUS_1                           73                             75
  CLUS_2                           66                            122
  CLUS_3                           61                             26
  CLUS_4                           31                             18
D54V4, multiclass
D54V5, multiclass
        clus
vv       DEL PEAK 23(9Q21.11) MUTATED DEL PEAK 23(9Q21.11) WILD-TYPE
  CLUS_1                           42                             43
  CLUS_2                           29                             46
  CLUS_3                           43                             32
D54V6, multiclass
        clus
vv       DEL PEAK 23(9Q21.11) MUTATED DEL PEAK 23(9Q21.11) WILD-TYPE
  CLUS_1                           10                             13
  CLUS_2                           48                             41
  CLUS_3                           38                             27
  CLUS_4                           18                             40
D54V7, multiclass
D54V8, multiclass
        clus
vv       DEL PEAK 23(9Q21.11) MUTATED DEL PEAK 23(9Q21.11) WILD-TYPE
  CLUS_1                           59                             93
  CLUS_2                           72                             33
  CLUS_3                           43                             52
D54V9, multiclass
        clus
vv       DEL PEAK 23(9Q21.11) MUTATED DEL PEAK 23(9Q21.11) WILD-TYPE
  CLUS_1                           63                             95
  CLUS_2                          104                             79
  CLUS_3                           32                             25
D54V10, multiclass
        clus
vv       DEL PEAK 23(9Q21.11) MUTATED DEL PEAK 23(9Q21.11) WILD-TYPE
  CLUS_1                           60                            103
  CLUS_2                           61                             54
  CLUS_3                           78                             42

Clustering(55) Variable = Del Peak 24(10p15.3) mutation analysis
D55V1, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            2                              7
  CLUS_3                            3                              9
  CLUS_4                            1                              5
D55V2, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            3                             10
  CLUS_3                            3                              9
D55V3, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                           49                             99
  CLUS_2                           28                            160
  CLUS_3                           25                             62
  CLUS_4                           11                             38
D55V4, multiclass
D55V5, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                           24                             61
  CLUS_2                           15                             60
  CLUS_3                           18                             57
D55V6, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                            5                             18
  CLUS_2                           26                             63
  CLUS_3                           15                             50
  CLUS_4                           11                             47
D55V7, multiclass
D55V8, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                           32                            120
  CLUS_2                           29                             76
  CLUS_3                           23                             72
D55V9, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                           26                            132
  CLUS_2                           50                            133
  CLUS_3                           22                             35
D55V10, multiclass
        clus
vv       DEL PEAK 24(10P15.3) MUTATED DEL PEAK 24(10P15.3) WILD-TYPE
  CLUS_1                           29                            134
  CLUS_2                           36                             79
  CLUS_3                           33                             87

Clustering(56) Variable = Del Peak 25(10q26.3) mutation analysis
D56V1, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                            2                              3
  CLUS_2                            4                              5
  CLUS_3                            4                              8
  CLUS_4                            1                              5
D56V2, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                            1                              6
  CLUS_2                            4                              9
  CLUS_3                            6                              6
D56V3, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                           63                             85
  CLUS_2                           32                            156
  CLUS_3                           21                             66
  CLUS_4                           14                             35
D56V4, multiclass
D56V5, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                           36                             49
  CLUS_2                           14                             61
  CLUS_3                           18                             57
D56V6, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                            6                             17
  CLUS_2                           36                             53
  CLUS_3                           15                             50
  CLUS_4                           11                             47
D56V7, multiclass
D56V8, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                           34                            118
  CLUS_2                           27                             78
  CLUS_3                           37                             58
D56V9, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                           32                            126
  CLUS_2                           61                            122
  CLUS_3                           18                             39
D56V10, multiclass
        clus
vv       DEL PEAK 25(10Q26.3) MUTATED DEL PEAK 25(10Q26.3) WILD-TYPE
  CLUS_1                           32                            131
  CLUS_2                           36                             79
  CLUS_3                           43                             77

Clustering(57) Variable = Del Peak 26(11p15.5) mutation analysis
D57V1, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            2                              7
  CLUS_3                            1                             11
  CLUS_4                            3                              3
D57V2, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                            4                              3
  CLUS_2                            1                             12
  CLUS_3                            2                             10
D57V3, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           54                             94
  CLUS_2                           27                            161
  CLUS_3                           32                             55
  CLUS_4                           13                             36
D57V4, multiclass
D57V5, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           19                             66
  CLUS_2                           14                             61
  CLUS_3                           30                             45
D57V6, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                            5                             18
  CLUS_2                           20                             69
  CLUS_3                           29                             36
  CLUS_4                            9                             49
D57V7, multiclass
D57V8, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           22                            130
  CLUS_2                           44                             61
  CLUS_3                           26                             69
D57V9, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           34                            124
  CLUS_2                           61                            122
  CLUS_3                            9                             48
D57V10, multiclass
        clus
vv       DEL PEAK 26(11P15.5) MUTATED DEL PEAK 26(11P15.5) WILD-TYPE
  CLUS_1                           28                            135
  CLUS_2                           35                             80
  CLUS_3                           41                             79

Clustering(58) Variable = Del Peak 27(11q23.2) mutation analysis
D58V1, multiclass
        clus
vv       DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE
  CLUS_1                            2                              3
  CLUS_2                            2                              7
  CLUS_3                            1                             11
  CLUS_4                            1                              5
D58V2, multiclass
        clus
vv       DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE
  CLUS_1                            2                              5
  CLUS_2                            1                             12
  CLUS_3                            3                              9
D58V3, multiclass
        clus
vv       DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE
  CLUS_1                           30                            118
  CLUS_2                           29                            159
  CLUS_3                           32                             55
  CLUS_4                           18                             31
D58V4, multiclass
D58V5, multiclass
        clus
vv       DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE
  CLUS_1                           12                             73
  CLUS_2                           16                             59
  CLUS_3                           26                             49
D58V6, multiclass
        clus
vv       DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE
  CLUS_1                            7                             16
  CLUS_2                           10                             79
  CLUS_3                           23                             42
  CLUS_4                           14                             44
D58V7, multiclass
D58V8, multiclass
        clus
vv       DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE
  CLUS_1                           25                            127
  CLUS_2                           37                             68
  CLUS_3                           19                             76
D58V9, multiclass
        clus
vv       DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE
  CLUS_1                           33                            125
  CLUS_2                           51                            132
  CLUS_3                            6                             51
D58V10, multiclass
        clus
vv       DEL PEAK 27(11Q23.2) MUTATED DEL PEAK 27(11Q23.2) WILD-TYPE
  CLUS_1                           32                            131
  CLUS_2                           23                             92
  CLUS_3                           35                             85

Clustering(59) Variable = Del Peak 28(11q25) mutation analysis
D59V1, multiclass
        clus
vv       DEL PEAK 28(11Q25) MUTATED DEL PEAK 28(11Q25) WILD-TYPE
  CLUS_1                          2                            3
  CLUS_2                          2                            7
  CLUS_3                          0                           12
  CLUS_4                          1                            5
D59V2, multiclass
        clus
vv       DEL PEAK 28(11Q25) MUTATED DEL PEAK 28(11Q25) WILD-TYPE
  CLUS_1                          2                            5
  CLUS_2                          0                           13
  CLUS_3                          3                            9
D59V3, multiclass
        clus
vv       DEL PEAK 28(11Q25) MUTATED DEL PEAK 28(11Q25) WILD-TYPE
  CLUS_1                         32                          116
  CLUS_2                         28                          160
  CLUS_3                         30                           57
  CLUS_4                         15                           34
D59V4, multiclass
D59V5, multiclass
        clus
vv       DEL PEAK 28(11Q25) MUTATED DEL PEAK 28(11Q25) WILD-TYPE
  CLUS_1                         10                           75
  CLUS_2                         16                           59
  CLUS_3                         27                           48
D59V6, multiclass
        clus
vv       DEL PEAK 28(11Q25) MUTATED DEL PEAK 28(11Q25) WILD-TYPE
  CLUS_1                          6                           17
  CLUS_2                         12                           77
  CLUS_3                         24                           41
  CLUS_4                         11                           47
D59V7, multiclass
D59V8, multiclass
        clus
vv       DEL PEAK 28(11Q25) MUTATED DEL PEAK 28(11Q25) WILD-TYPE
  CLUS_1                         25                          127
  CLUS_2                         35                           70
  CLUS_3                         19                           76
D59V9, multiclass
        clus
vv       DEL PEAK 28(11Q25) MUTATED DEL PEAK 28(11Q25) WILD-TYPE
  CLUS_1                         34                          124
  CLUS_2                         46                          137
  CLUS_3                          7                           50
D59V10, multiclass
        clus
vv       DEL PEAK 28(11Q25) MUTATED DEL PEAK 28(11Q25) WILD-TYPE
  CLUS_1                         34                          129
  CLUS_2                         22                           93
  CLUS_3                         31                           89

Clustering(60) Variable = Del Peak 29(12p13.2) mutation analysis
D60V1, multiclass
        clus
vv       DEL PEAK 29(12P13.2) MUTATED DEL PEAK 29(12P13.2) WILD-TYPE
  CLUS_1                            0                              5
  CLUS_2                            5                              4
  CLUS_3                            5                              7
  CLUS_4                            2                              4
D60V2, multiclass
        clus
vv       DEL PEAK 29(12P13.2) MUTATED DEL PEAK 29(12P13.2) WILD-TYPE
  CLUS_1                            2                              5
  CLUS_2                            6                              7
  CLUS_3                            4                              8
D60V3, multiclass
        clus
vv       DEL PEAK 29(12P13.2) MUTATED DEL PEAK 29(12P13.2) WILD-TYPE
  CLUS_1                           59                             89
  CLUS_2                           41                            147
  CLUS_3                           14                             73
  CLUS_4                           12                             37
D60V4, multiclass
D60V5, multiclass
        clus
vv       DEL PEAK 29(12P13.2) MUTATED DEL PEAK 29(12P13.2) WILD-TYPE
  CLUS_1                           32                             53
  CLUS_2                           18                             57
  CLUS_3                           17                             58
D60V6, multiclass
        clus
vv       DEL PEAK 29(12P13.2) MUTATED DEL PEAK 29(12P13.2) WILD-TYPE
  CLUS_1                            5                             18
  CLUS_2                           36                             53
  CLUS_3                           13                             52
  CLUS_4                           13                             45
D60V7, multiclass
D60V8, multiclass
        clus
vv       DEL PEAK 29(12P13.2) MUTATED DEL PEAK 29(12P13.2) WILD-TYPE
  CLUS_1                           42                            110
  CLUS_2                           22                             83
  CLUS_3                           33                             62
D60V9, multiclass
        clus
vv       DEL PEAK 29(12P13.2) MUTATED DEL PEAK 29(12P13.2) WILD-TYPE
  CLUS_1                           41                            117
  CLUS_2                           49                            134
  CLUS_3                           15                             42
D60V10, multiclass
        clus
vv       DEL PEAK 29(12P13.2) MUTATED DEL PEAK 29(12P13.2) WILD-TYPE
  CLUS_1                           42                            121
  CLUS_2                           31                             84
  CLUS_3                           32                             88

Clustering(61) Variable = Del Peak 30(12q12) mutation analysis
D61V1, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                          0                            5
  CLUS_2                          2                            7
  CLUS_3                          4                            8
  CLUS_4                          1                            5
D61V2, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                          1                            6
  CLUS_2                          4                            9
  CLUS_3                          2                           10
D61V3, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                         47                          101
  CLUS_2                         29                          159
  CLUS_3                          6                           81
  CLUS_4                          8                           41
D61V4, multiclass
D61V5, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                         23                           62
  CLUS_2                         12                           63
  CLUS_3                         11                           64
D61V6, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                          3                           20
  CLUS_2                         26                           63
  CLUS_3                          6                           59
  CLUS_4                         11                           47
D61V7, multiclass
D61V8, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                         30                          122
  CLUS_2                         14                           91
  CLUS_3                         22                           73
D61V9, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                         33                          125
  CLUS_2                         28                          155
  CLUS_3                         14                           43
D61V10, multiclass
        clus
vv       DEL PEAK 30(12Q12) MUTATED DEL PEAK 30(12Q12) WILD-TYPE
  CLUS_1                         37                          126
  CLUS_2                         25                           90
  CLUS_3                         13                          107

Clustering(62) Variable = Del Peak 31(12q24.33) mutation analysis
D62V1, multiclass
        clus
vv       DEL PEAK 31(12Q24.33) MUTATED DEL PEAK 31(12Q24.33) WILD-TYPE
  CLUS_1                             0                               5
  CLUS_2                             0                               9
  CLUS_3                             5                               7
  CLUS_4                             1                               5
D62V2, multiclass
        clus
vv       DEL PEAK 31(12Q24.33) MUTATED DEL PEAK 31(12Q24.33) WILD-TYPE
  CLUS_1                             1                               6
  CLUS_2                             5                               8
  CLUS_3                             0                              12
D62V3, multiclass
        clus
vv       DEL PEAK 31(12Q24.33) MUTATED DEL PEAK 31(12Q24.33) WILD-TYPE
  CLUS_1                            55                              93
  CLUS_2                            45                             143
  CLUS_3                            10                              77
  CLUS_4                             5                              44
D62V4, multiclass
D62V5, multiclass
        clus
vv       DEL PEAK 31(12Q24.33) MUTATED DEL PEAK 31(12Q24.33) WILD-TYPE
  CLUS_1                            26                              59
  CLUS_2                            21                              54
  CLUS_3                            10                              65
D62V6, multiclass
        clus
vv       DEL PEAK 31(12Q24.33) MUTATED DEL PEAK 31(12Q24.33) WILD-TYPE
  CLUS_1                             6                              17
  CLUS_2                            30                              59
  CLUS_3                             6                              59
  CLUS_4                            15                              43
D62V7, multiclass
D62V8, multiclass
        clus
vv       DEL PEAK 31(12Q24.33) MUTATED DEL PEAK 31(12Q24.33) WILD-TYPE
  CLUS_1                            46                             106
  CLUS_2                            12                              93
  CLUS_3                            25                              70
D62V9, multiclass
        clus
vv       DEL PEAK 31(12Q24.33) MUTATED DEL PEAK 31(12Q24.33) WILD-TYPE
  CLUS_1                            48                             110
  CLUS_2                            29                             154
  CLUS_3                            16                              41
D62V10, multiclass
        clus
vv       DEL PEAK 31(12Q24.33) MUTATED DEL PEAK 31(12Q24.33) WILD-TYPE
  CLUS_1                            54                             109
  CLUS_2                            28                              87
  CLUS_3                            11                             109

Clustering(63) Variable = Del Peak 32(13q12.11) mutation analysis
D63V1, multiclass
        clus
vv       DEL PEAK 32(13Q12.11) MUTATED DEL PEAK 32(13Q12.11) WILD-TYPE
  CLUS_1                             5                               0
  CLUS_2                             5                               4
  CLUS_3                             1                              11
  CLUS_4                             4                               2
D63V2, multiclass
        clus
vv       DEL PEAK 32(13Q12.11) MUTATED DEL PEAK 32(13Q12.11) WILD-TYPE
  CLUS_1                             5                               2
  CLUS_2                             2                              11
  CLUS_3                             8                               4
D63V3, multiclass
        clus
vv       DEL PEAK 32(13Q12.11) MUTATED DEL PEAK 32(13Q12.11) WILD-TYPE
  CLUS_1                           118                              30
  CLUS_2                            58                             130
  CLUS_3                            59                              28
  CLUS_4                            30                              19
D63V4, multiclass
D63V5, multiclass
        clus
vv       DEL PEAK 32(13Q12.11) MUTATED DEL PEAK 32(13Q12.11) WILD-TYPE
  CLUS_1                            57                              28
  CLUS_2                            30                              45
  CLUS_3                            45                              30
D63V6, multiclass
        clus
vv       DEL PEAK 32(13Q12.11) MUTATED DEL PEAK 32(13Q12.11) WILD-TYPE
  CLUS_1                             8                              15
  CLUS_2                            66                              23
  CLUS_3                            39                              26
  CLUS_4                            19                              39
D63V7, multiclass
D63V8, multiclass
        clus
vv       DEL PEAK 32(13Q12.11) MUTATED DEL PEAK 32(13Q12.11) WILD-TYPE
  CLUS_1                            56                              96
  CLUS_2                            74                              31
  CLUS_3                            66                              29
D63V9, multiclass
        clus
vv       DEL PEAK 32(13Q12.11) MUTATED DEL PEAK 32(13Q12.11) WILD-TYPE
  CLUS_1                            66                              92
  CLUS_2                           124                              59
  CLUS_3                            34                              23
D63V10, multiclass
        clus
vv       DEL PEAK 32(13Q12.11) MUTATED DEL PEAK 32(13Q12.11) WILD-TYPE
  CLUS_1                            66                              97
  CLUS_2                            77                              38
  CLUS_3                            81                              39

Clustering(64) Variable = Del Peak 33(13q12.13) mutation analysis
D64V1, multiclass
        clus
vv       DEL PEAK 33(13Q12.13) MUTATED DEL PEAK 33(13Q12.13) WILD-TYPE
  CLUS_1                             4                               1
  CLUS_2                             5                               4
  CLUS_3                             1                              11
  CLUS_4                             4                               2
D64V2, multiclass
        clus
vv       DEL PEAK 33(13Q12.13) MUTATED DEL PEAK 33(13Q12.13) WILD-TYPE
  CLUS_1                             5                               2
  CLUS_2                             2                              11
  CLUS_3                             7                               5
D64V3, multiclass
        clus
vv       DEL PEAK 33(13Q12.13) MUTATED DEL PEAK 33(13Q12.13) WILD-TYPE
  CLUS_1                           120                              28
  CLUS_2                            59                             129
  CLUS_3                            56                              31
  CLUS_4                            31                              18
D64V4, multiclass
D64V5, multiclass
        clus
vv       DEL PEAK 33(13Q12.13) MUTATED DEL PEAK 33(13Q12.13) WILD-TYPE
  CLUS_1                            58                              27
  CLUS_2                            29                              46
  CLUS_3                            46                              29
D64V6, multiclass
        clus
vv       DEL PEAK 33(13Q12.13) MUTATED DEL PEAK 33(13Q12.13) WILD-TYPE
  CLUS_1                             8                              15
  CLUS_2                            67                              22
  CLUS_3                            39                              26
  CLUS_4                            19                              39
D64V7, multiclass
D64V8, multiclass
        clus
vv       DEL PEAK 33(13Q12.13) MUTATED DEL PEAK 33(13Q12.13) WILD-TYPE
  CLUS_1                            57                              95
  CLUS_2                            73                              32
  CLUS_3                            67                              28
D64V9, multiclass
        clus
vv       DEL PEAK 33(13Q12.13) MUTATED DEL PEAK 33(13Q12.13) WILD-TYPE
  CLUS_1                            67                              91
  CLUS_2                           122                              61
  CLUS_3                            34                              23
D64V10, multiclass
        clus
vv       DEL PEAK 33(13Q12.13) MUTATED DEL PEAK 33(13Q12.13) WILD-TYPE
  CLUS_1                            67                              96
  CLUS_2                            75                              40
  CLUS_3                            81                              39

Clustering(65) Variable = Del Peak 34(13q14.2) mutation analysis
D65V1, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            5                              4
  CLUS_3                            1                             11
  CLUS_4                            4                              2
D65V2, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                            5                              2
  CLUS_2                            2                             11
  CLUS_3                            7                              5
D65V3, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                          117                             31
  CLUS_2                           52                            136
  CLUS_3                           52                             35
  CLUS_4                           35                             14
D65V4, multiclass
D65V5, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           56                             29
  CLUS_2                           27                             48
  CLUS_3                           42                             33
D65V6, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                            8                             15
  CLUS_2                           60                             29
  CLUS_3                           40                             25
  CLUS_4                           17                             41
D65V7, multiclass
D65V8, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           53                             99
  CLUS_2                           68                             37
  CLUS_3                           64                             31
D65V9, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           62                             96
  CLUS_2                          116                             67
  CLUS_3                           33                             24
D65V10, multiclass
        clus
vv       DEL PEAK 34(13Q14.2) MUTATED DEL PEAK 34(13Q14.2) WILD-TYPE
  CLUS_1                           61                            102
  CLUS_2                           72                             43
  CLUS_3                           78                             42

Clustering(66) Variable = Del Peak 35(13q34) mutation analysis
D66V1, multiclass
        clus
vv       DEL PEAK 35(13Q34) MUTATED DEL PEAK 35(13Q34) WILD-TYPE
  CLUS_1                          3                            2
  CLUS_2                          4                            5
  CLUS_3                          1                           11
  CLUS_4                          4                            2
D66V2, multiclass
        clus
vv       DEL PEAK 35(13Q34) MUTATED DEL PEAK 35(13Q34) WILD-TYPE
  CLUS_1                          5                            2
  CLUS_2                          2                           11
  CLUS_3                          5                            7
D66V3, multiclass
        clus
vv       DEL PEAK 35(13Q34) MUTATED DEL PEAK 35(13Q34) WILD-TYPE
  CLUS_1                         95                           53
  CLUS_2                         43                          145
  CLUS_3                         49                           38
  CLUS_4                         30                           19
D66V4, multiclass
D66V5, multiclass
        clus
vv       DEL PEAK 35(13Q34) MUTATED DEL PEAK 35(13Q34) WILD-TYPE
  CLUS_1                         44                           41
  CLUS_2                         21                           54
  CLUS_3                         38                           37
D66V6, multiclass
        clus
vv       DEL PEAK 35(13Q34) MUTATED DEL PEAK 35(13Q34) WILD-TYPE
  CLUS_1                          7                           16
  CLUS_2                         47                           42
  CLUS_3                         35                           30
  CLUS_4                         14                           44
D66V7, multiclass
D66V8, multiclass
        clus
vv       DEL PEAK 35(13Q34) MUTATED DEL PEAK 35(13Q34) WILD-TYPE
  CLUS_1                         46                          106
  CLUS_2                         59                           46
  CLUS_3                         54                           41
D66V9, multiclass
        clus
vv       DEL PEAK 35(13Q34) MUTATED DEL PEAK 35(13Q34) WILD-TYPE
  CLUS_1                         54                          104
  CLUS_2                         96                           87
  CLUS_3                         30                           27
D66V10, multiclass
        clus
vv       DEL PEAK 35(13Q34) MUTATED DEL PEAK 35(13Q34) WILD-TYPE
  CLUS_1                         54                          109
  CLUS_2                         63                           52
  CLUS_3                         63                           57

Clustering(67) Variable = Del Peak 36(14q32.33) mutation analysis
D67V1, multiclass
        clus
vv       DEL PEAK 36(14Q32.33) MUTATED DEL PEAK 36(14Q32.33) WILD-TYPE
  CLUS_1                             1                               4
  CLUS_2                             3                               6
  CLUS_3                             3                               9
  CLUS_4                             3                               3
D67V2, multiclass
        clus
vv       DEL PEAK 36(14Q32.33) MUTATED DEL PEAK 36(14Q32.33) WILD-TYPE
  CLUS_1                             4                               3
  CLUS_2                             3                              10
  CLUS_3                             3                               9
D67V3, multiclass
        clus
vv       DEL PEAK 36(14Q32.33) MUTATED DEL PEAK 36(14Q32.33) WILD-TYPE
  CLUS_1                            46                             102
  CLUS_2                            46                             142
  CLUS_3                            41                              46
  CLUS_4                             7                              42
D67V4, multiclass
D67V5, multiclass
        clus
vv       DEL PEAK 36(14Q32.33) MUTATED DEL PEAK 36(14Q32.33) WILD-TYPE
  CLUS_1                            25                              60
  CLUS_2                            17                              58
  CLUS_3                            28                              47
D67V6, multiclass
        clus
vv       DEL PEAK 36(14Q32.33) MUTATED DEL PEAK 36(14Q32.33) WILD-TYPE
  CLUS_1                             6                              17
  CLUS_2                            22                              67
  CLUS_3                            28                              37
  CLUS_4                            14                              44
D67V7, multiclass
D67V8, multiclass
        clus
vv       DEL PEAK 36(14Q32.33) MUTATED DEL PEAK 36(14Q32.33) WILD-TYPE
  CLUS_1                            38                             114
  CLUS_2                            40                              65
  CLUS_3                            27                              68
D67V9, multiclass
        clus
vv       DEL PEAK 36(14Q32.33) MUTATED DEL PEAK 36(14Q32.33) WILD-TYPE
  CLUS_1                            44                             114
  CLUS_2                            66                             117
  CLUS_3                            10                              47
D67V10, multiclass
        clus
vv       DEL PEAK 36(14Q32.33) MUTATED DEL PEAK 36(14Q32.33) WILD-TYPE
  CLUS_1                            41                             122
  CLUS_2                            38                              77
  CLUS_3                            41                              79

Clustering(68) Variable = Del Peak 37(15q11.2) mutation analysis
D68V1, multiclass
        clus
vv       DEL PEAK 37(15Q11.2) MUTATED DEL PEAK 37(15Q11.2) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            7                              2
  CLUS_3                            4                              8
  CLUS_4                            4                              2
D68V2, multiclass
        clus
vv       DEL PEAK 37(15Q11.2) MUTATED DEL PEAK 37(15Q11.2) WILD-TYPE
  CLUS_1                            5                              2
  CLUS_2                            5                              8
  CLUS_3                            9                              3
D68V3, multiclass
        clus
vv       DEL PEAK 37(15Q11.2) MUTATED DEL PEAK 37(15Q11.2) WILD-TYPE
  CLUS_1                          104                             44
  CLUS_2                           63                            125
  CLUS_3                           42                             45
  CLUS_4                           30                             19
D68V4, multiclass
D68V5, multiclass
        clus
vv       DEL PEAK 37(15Q11.2) MUTATED DEL PEAK 37(15Q11.2) WILD-TYPE
  CLUS_1                           50                             35
  CLUS_2                           31                             44
  CLUS_3                           38                             37
D68V6, multiclass
        clus
vv       DEL PEAK 37(15Q11.2) MUTATED DEL PEAK 37(15Q11.2) WILD-TYPE
  CLUS_1                           10                             13
  CLUS_2                           59                             30
  CLUS_3                           33                             32
  CLUS_4                           17                             41
D68V7, multiclass
D68V8, multiclass
        clus
vv       DEL PEAK 37(15Q11.2) MUTATED DEL PEAK 37(15Q11.2) WILD-TYPE
  CLUS_1                           59                             93
  CLUS_2                           49                             56
  CLUS_3                           71                             24
D68V9, multiclass
        clus
vv       DEL PEAK 37(15Q11.2) MUTATED DEL PEAK 37(15Q11.2) WILD-TYPE
  CLUS_1                           63                             95
  CLUS_2                          108                             75
  CLUS_3                           27                             30
D68V10, multiclass
        clus
vv       DEL PEAK 37(15Q11.2) MUTATED DEL PEAK 37(15Q11.2) WILD-TYPE
  CLUS_1                           61                            102
  CLUS_2                           70                             45
  CLUS_3                           67                             53

Clustering(69) Variable = Del Peak 38(16q23.1) mutation analysis
D69V1, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            2                              7
  CLUS_3                            2                             10
  CLUS_4                            1                              5
D69V2, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                            2                              5
  CLUS_2                            2                             11
  CLUS_3                            5                              7
D69V3, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           68                             80
  CLUS_2                           37                            151
  CLUS_3                           40                             47
  CLUS_4                           15                             34
D69V4, multiclass
D69V5, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           28                             57
  CLUS_2                           16                             59
  CLUS_3                           38                             37
D69V6, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                            6                             17
  CLUS_2                           34                             55
  CLUS_3                           30                             35
  CLUS_4                           12                             46
D69V7, multiclass
D69V8, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           28                            124
  CLUS_2                           43                             62
  CLUS_3                           50                             45
D69V9, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           40                            118
  CLUS_2                           76                            107
  CLUS_3                           20                             37
D69V10, multiclass
        clus
vv       DEL PEAK 38(16Q23.1) MUTATED DEL PEAK 38(16Q23.1) WILD-TYPE
  CLUS_1                           41                            122
  CLUS_2                           43                             72
  CLUS_3                           52                             68

Clustering(70) Variable = Del Peak 39(16q24.3) mutation analysis
D70V1, multiclass
        clus
vv       DEL PEAK 39(16Q24.3) MUTATED DEL PEAK 39(16Q24.3) WILD-TYPE
  CLUS_1                            4                              1
  CLUS_2                            2                              7
  CLUS_3                            3                              9
  CLUS_4                            2                              4
D70V2, multiclass
        clus
vv       DEL PEAK 39(16Q24.3) MUTATED DEL PEAK 39(16Q24.3) WILD-TYPE
  CLUS_1                            3                              4
  CLUS_2                            3                             10
  CLUS_3                            5                              7
D70V3, multiclass
        clus
vv       DEL PEAK 39(16Q24.3) MUTATED DEL PEAK 39(16Q24.3) WILD-TYPE
  CLUS_1                           73                             75
  CLUS_2                           45                            143
  CLUS_3                           43                             44
  CLUS_4                           17                             32
D70V4, multiclass
D70V5, multiclass
        clus
vv       DEL PEAK 39(16Q24.3) MUTATED DEL PEAK 39(16Q24.3) WILD-TYPE
  CLUS_1                           28                             57
  CLUS_2                           21                             54
  CLUS_3                           37                             38
D70V6, multiclass
        clus
vv       DEL PEAK 39(16Q24.3) MUTATED DEL PEAK 39(16Q24.3) WILD-TYPE
  CLUS_1                            6                             17
  CLUS_2                           35                             54
  CLUS_3                           30                             35
  CLUS_4                           15                             43
D70V7, multiclass
D70V8, multiclass
        clus
vv       DEL PEAK 39(16Q24.3) MUTATED DEL PEAK 39(16Q24.3) WILD-TYPE
  CLUS_1                           35                            117
  CLUS_2                           46                             59
  CLUS_3                           50                             45
D70V9, multiclass
        clus
vv       DEL PEAK 39(16Q24.3) MUTATED DEL PEAK 39(16Q24.3) WILD-TYPE
  CLUS_1                           49                            109
  CLUS_2                           84                             99
  CLUS_3                           21                             36
D70V10, multiclass
        clus
vv       DEL PEAK 39(16Q24.3) MUTATED DEL PEAK 39(16Q24.3) WILD-TYPE
  CLUS_1                           48                            115
  CLUS_2                           49                             66
  CLUS_3                           57                             63

Clustering(71) Variable = Del Peak 40(17p13.3) mutation analysis
D71V1, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                            5                              0
  CLUS_2                            6                              3
  CLUS_3                            7                              5
  CLUS_4                            5                              1
D71V2, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                            6                              1
  CLUS_2                            8                              5
  CLUS_3                            9                              3
D71V3, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                          111                             37
  CLUS_2                           63                            125
  CLUS_3                           53                             34
  CLUS_4                           25                             24
D71V4, multiclass
D71V5, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           58                             27
  CLUS_2                           36                             39
  CLUS_3                           46                             29
D71V6, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           11                             12
  CLUS_2                           64                             25
  CLUS_3                           41                             24
  CLUS_4                           24                             34
D71V7, multiclass
D71V8, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           67                             85
  CLUS_2                           65                             40
  CLUS_3                           71                             24
D71V9, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           77                             81
  CLUS_2                          117                             66
  CLUS_3                           26                             31
D71V10, multiclass
        clus
vv       DEL PEAK 40(17P13.3) MUTATED DEL PEAK 40(17P13.3) WILD-TYPE
  CLUS_1                           74                             89
  CLUS_2                           69                             46
  CLUS_3                           77                             43

Clustering(72) Variable = Del Peak 41(18q21.32) mutation analysis
D72V1, multiclass
        clus
vv       DEL PEAK 41(18Q21.32) MUTATED DEL PEAK 41(18Q21.32) WILD-TYPE
  CLUS_1                             3                               2
  CLUS_2                             7                               2
  CLUS_3                             3                               9
  CLUS_4                             3                               3
D72V2, multiclass
        clus
vv       DEL PEAK 41(18Q21.32) MUTATED DEL PEAK 41(18Q21.32) WILD-TYPE
  CLUS_1                             4                               3
  CLUS_2                             4                               9
  CLUS_3                             8                               4
D72V3, multiclass
        clus
vv       DEL PEAK 41(18Q21.32) MUTATED DEL PEAK 41(18Q21.32) WILD-TYPE
  CLUS_1                           102                              46
  CLUS_2                            69                             119
  CLUS_3                            48                              39
  CLUS_4                            14                              35
D72V4, multiclass
D72V5, multiclass
        clus
vv       DEL PEAK 41(18Q21.32) MUTATED DEL PEAK 41(18Q21.32) WILD-TYPE
  CLUS_1                            56                              29
  CLUS_2                            28                              47
  CLUS_3                            41                              34
D72V6, multiclass
        clus
vv       DEL PEAK 41(18Q21.32) MUTATED DEL PEAK 41(18Q21.32) WILD-TYPE
  CLUS_1                            12                              11
  CLUS_2                            59                              30
  CLUS_3                            34                              31
  CLUS_4                            20                              38
D72V7, multiclass
D72V8, multiclass
        clus
vv       DEL PEAK 41(18Q21.32) MUTATED DEL PEAK 41(18Q21.32) WILD-TYPE
  CLUS_1                            68                              84
  CLUS_2                            52                              53
  CLUS_3                            61                              34
D72V9, multiclass
        clus
vv       DEL PEAK 41(18Q21.32) MUTATED DEL PEAK 41(18Q21.32) WILD-TYPE
  CLUS_1                            67                              91
  CLUS_2                            97                              86
  CLUS_3                            34                              23
D72V10, multiclass
        clus
vv       DEL PEAK 41(18Q21.32) MUTATED DEL PEAK 41(18Q21.32) WILD-TYPE
  CLUS_1                            69                              94
  CLUS_2                            68                              47
  CLUS_3                            61                              59

Clustering(73) Variable = Del Peak 42(18q23) mutation analysis
D73V1, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                          3                            2
  CLUS_2                          8                            1
  CLUS_3                          3                            9
  CLUS_4                          3                            3
D73V2, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                          4                            3
  CLUS_2                          4                            9
  CLUS_3                          9                            3
D73V3, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                        104                           44
  CLUS_2                         65                          123
  CLUS_3                         48                           39
  CLUS_4                         11                           38
D73V4, multiclass
D73V5, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                         53                           32
  CLUS_2                         27                           48
  CLUS_3                         39                           36
D73V6, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                         12                           11
  CLUS_2                         57                           32
  CLUS_3                         32                           33
  CLUS_4                         18                           40
D73V7, multiclass
D73V8, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                         64                           88
  CLUS_2                         48                           57
  CLUS_3                         63                           32
D73V9, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                         63                           95
  CLUS_2                         96                           87
  CLUS_3                         34                           23
D73V10, multiclass
        clus
vv       DEL PEAK 42(18Q23) MUTATED DEL PEAK 42(18Q23) WILD-TYPE
  CLUS_1                         65                           98
  CLUS_2                         70                           45
  CLUS_3                         58                           62

Clustering(74) Variable = Del Peak 43(19p13.3) mutation analysis
D74V1, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            4                              5
  CLUS_3                            5                              7
  CLUS_4                            4                              2
D74V2, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                            4                              3
  CLUS_2                            6                              7
  CLUS_3                            4                              8
D74V3, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           77                             71
  CLUS_2                           69                            119
  CLUS_3                           70                             17
  CLUS_4                           36                             13
D74V4, multiclass
D74V5, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           47                             38
  CLUS_2                           41                             34
  CLUS_3                           47                             28
D74V6, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           12                             11
  CLUS_2                           51                             38
  CLUS_3                           43                             22
  CLUS_4                           29                             29
D74V7, multiclass
D74V8, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           61                             91
  CLUS_2                           81                             24
  CLUS_3                           52                             43
D74V9, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           67                             91
  CLUS_2                          122                             61
  CLUS_3                           22                             35
D74V10, multiclass
        clus
vv       DEL PEAK 43(19P13.3) MUTATED DEL PEAK 43(19P13.3) WILD-TYPE
  CLUS_1                           66                             97
  CLUS_2                           62                             53
  CLUS_3                           83                             37

Clustering(75) Variable = Del Peak 44(19p13.2) mutation analysis
D75V1, multiclass
        clus
vv       DEL PEAK 44(19P13.2) MUTATED DEL PEAK 44(19P13.2) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            5                              4
  CLUS_3                            5                              7
  CLUS_4                            3                              3
D75V2, multiclass
        clus
vv       DEL PEAK 44(19P13.2) MUTATED DEL PEAK 44(19P13.2) WILD-TYPE
  CLUS_1                            3                              4
  CLUS_2                            6                              7
  CLUS_3                            5                              7
D75V3, multiclass
        clus
vv       DEL PEAK 44(19P13.2) MUTATED DEL PEAK 44(19P13.2) WILD-TYPE
  CLUS_1                           77                             71
  CLUS_2                           66                            122
  CLUS_3                           66                             21
  CLUS_4                           37                             12
D75V4, multiclass
D75V5, multiclass
        clus
vv       DEL PEAK 44(19P13.2) MUTATED DEL PEAK 44(19P13.2) WILD-TYPE
  CLUS_1                           42                             43
  CLUS_2                           39                             36
  CLUS_3                           45                             30
D75V6, multiclass
        clus
vv       DEL PEAK 44(19P13.2) MUTATED DEL PEAK 44(19P13.2) WILD-TYPE
  CLUS_1                           11                             12
  CLUS_2                           46                             43
  CLUS_3                           42                             23
  CLUS_4                           27                             31
D75V7, multiclass
D75V8, multiclass
        clus
vv       DEL PEAK 44(19P13.2) MUTATED DEL PEAK 44(19P13.2) WILD-TYPE
  CLUS_1                           59                             93
  CLUS_2                           75                             30
  CLUS_3                           52                             43
D75V9, multiclass
        clus
vv       DEL PEAK 44(19P13.2) MUTATED DEL PEAK 44(19P13.2) WILD-TYPE
  CLUS_1                           65                             93
  CLUS_2                          118                             65
  CLUS_3                           19                             38
D75V10, multiclass
        clus
vv       DEL PEAK 44(19P13.2) MUTATED DEL PEAK 44(19P13.2) WILD-TYPE
  CLUS_1                           62                            101
  CLUS_2                           56                             59
  CLUS_3                           84                             36

Clustering(76) Variable = Del Peak 45(19p12) mutation analysis
D76V1, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                          2                            3
  CLUS_2                          5                            4
  CLUS_3                          3                            9
  CLUS_4                          3                            3
D76V2, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                          3                            4
  CLUS_2                          4                            9
  CLUS_3                          6                            6
D76V3, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         75                           73
  CLUS_2                         41                          147
  CLUS_3                         55                           32
  CLUS_4                         28                           21
D76V4, multiclass
D76V5, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         38                           47
  CLUS_2                         32                           43
  CLUS_3                         38                           37
D76V6, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                          8                           15
  CLUS_2                         45                           44
  CLUS_3                         33                           32
  CLUS_4                         22                           36
D76V7, multiclass
D76V8, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         43                          109
  CLUS_2                         59                           46
  CLUS_3                         49                           46
D76V9, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         49                          109
  CLUS_2                         97                           86
  CLUS_3                         16                           41
D76V10, multiclass
        clus
vv       DEL PEAK 45(19P12) MUTATED DEL PEAK 45(19P12) WILD-TYPE
  CLUS_1                         48                          115
  CLUS_2                         50                           65
  CLUS_3                         64                           56

Clustering(77) Variable = Del Peak 46(19q13.33) mutation analysis
D77V1, multiclass
        clus
vv       DEL PEAK 46(19Q13.33) MUTATED DEL PEAK 46(19Q13.33) WILD-TYPE
  CLUS_1                             2                               3
  CLUS_2                             6                               3
  CLUS_3                             3                               9
  CLUS_4                             3                               3
D77V2, multiclass
        clus
vv       DEL PEAK 46(19Q13.33) MUTATED DEL PEAK 46(19Q13.33) WILD-TYPE
  CLUS_1                             3                               4
  CLUS_2                             4                               9
  CLUS_3                             7                               5
D77V3, multiclass
        clus
vv       DEL PEAK 46(19Q13.33) MUTATED DEL PEAK 46(19Q13.33) WILD-TYPE
  CLUS_1                            75                              73
  CLUS_2                            41                             147
  CLUS_3                            39                              48
  CLUS_4                            19                              30
D77V4, multiclass
D77V5, multiclass
        clus
vv       DEL PEAK 46(19Q13.33) MUTATED DEL PEAK 46(19Q13.33) WILD-TYPE
  CLUS_1                            39                              46
  CLUS_2                            22                              53
  CLUS_3                            32                              43
D77V6, multiclass
        clus
vv       DEL PEAK 46(19Q13.33) MUTATED DEL PEAK 46(19Q13.33) WILD-TYPE
  CLUS_1                             8                              15
  CLUS_2                            43                              46
  CLUS_3                            23                              42
  CLUS_4                            19                              39
D77V7, multiclass
D77V8, multiclass
        clus
vv       DEL PEAK 46(19Q13.33) MUTATED DEL PEAK 46(19Q13.33) WILD-TYPE
  CLUS_1                            43                             109
  CLUS_2                            45                              60
  CLUS_3                            43                              52
D77V9, multiclass
        clus
vv       DEL PEAK 46(19Q13.33) MUTATED DEL PEAK 46(19Q13.33) WILD-TYPE
  CLUS_1                            38                             120
  CLUS_2                            84                              99
  CLUS_3                            21                              36
D77V10, multiclass
        clus
vv       DEL PEAK 46(19Q13.33) MUTATED DEL PEAK 46(19Q13.33) WILD-TYPE
  CLUS_1                            37                             126
  CLUS_2                            48                              67
  CLUS_3                            58                              62

Clustering(78) Variable = Del Peak 47(20p13) mutation analysis
D78V1, multiclass
        clus
vv       DEL PEAK 47(20P13) MUTATED DEL PEAK 47(20P13) WILD-TYPE
  CLUS_1                          3                            2
  CLUS_2                          4                            5
  CLUS_3                          1                           11
  CLUS_4                          2                            4
D78V2, multiclass
        clus
vv       DEL PEAK 47(20P13) MUTATED DEL PEAK 47(20P13) WILD-TYPE
  CLUS_1                          3                            4
  CLUS_2                          2                           11
  CLUS_3                          5                            7
D78V3, multiclass
        clus
vv       DEL PEAK 47(20P13) MUTATED DEL PEAK 47(20P13) WILD-TYPE
  CLUS_1                         59                           89
  CLUS_2                         31                          157
  CLUS_3                         25                           62
  CLUS_4                          6                           43
D78V4, multiclass
D78V5, multiclass
        clus
vv       DEL PEAK 47(20P13) MUTATED DEL PEAK 47(20P13) WILD-TYPE
  CLUS_1                         30                           55
  CLUS_2                         10                           65
  CLUS_3                         19                           56
D78V6, multiclass
        clus
vv       DEL PEAK 47(20P13) MUTATED DEL PEAK 47(20P13) WILD-TYPE
  CLUS_1                          4                           19
  CLUS_2                         35                           54
  CLUS_3                         13                           52
  CLUS_4                          7                           51
D78V7, multiclass
D78V8, multiclass
        clus
vv       DEL PEAK 47(20P13) MUTATED DEL PEAK 47(20P13) WILD-TYPE
  CLUS_1                         29                          123
  CLUS_2                         25                           80
  CLUS_3                         34                           61
D78V9, multiclass
        clus
vv       DEL PEAK 47(20P13) MUTATED DEL PEAK 47(20P13) WILD-TYPE
  CLUS_1                         39                          119
  CLUS_2                         40                          143
  CLUS_3                         15                           42
D78V10, multiclass
        clus
vv       DEL PEAK 47(20P13) MUTATED DEL PEAK 47(20P13) WILD-TYPE
  CLUS_1                         40                          123
  CLUS_2                         29                           86
  CLUS_3                         25                           95

Clustering(79) Variable = Del Peak 48(21q11.2) mutation analysis
D79V1, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            2                              7
  CLUS_3                            1                             11
  CLUS_4                            4                              2
D79V2, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                            4                              3
  CLUS_2                            1                             12
  CLUS_3                            3                              9
D79V3, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           32                            116
  CLUS_2                           46                            142
  CLUS_3                           51                             36
  CLUS_4                           28                             21
D79V4, multiclass
D79V5, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           24                             61
  CLUS_2                           22                             53
  CLUS_3                           38                             37
D79V6, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                            5                             18
  CLUS_2                           27                             62
  CLUS_3                           35                             30
  CLUS_4                           17                             41
D79V7, multiclass
D79V8, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           30                            122
  CLUS_2                           60                             45
  CLUS_3                           33                             62
D79V9, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           35                            123
  CLUS_2                           84                             99
  CLUS_3                           18                             39
D79V10, multiclass
        clus
vv       DEL PEAK 48(21Q11.2) MUTATED DEL PEAK 48(21Q11.2) WILD-TYPE
  CLUS_1                           37                            126
  CLUS_2                           39                             76
  CLUS_3                           61                             59

Clustering(80) Variable = Del Peak 49(21q21.3) mutation analysis
D80V1, multiclass
        clus
vv       DEL PEAK 49(21Q21.3) MUTATED DEL PEAK 49(21Q21.3) WILD-TYPE
  CLUS_1                            1                              4
  CLUS_2                            2                              7
  CLUS_3                            2                             10
  CLUS_4                            5                              1
D80V2, multiclass
        clus
vv       DEL PEAK 49(21Q21.3) MUTATED DEL PEAK 49(21Q21.3) WILD-TYPE
  CLUS_1                            5                              2
  CLUS_2                            2                             11
  CLUS_3                            3                              9
D80V3, multiclass
        clus
vv       DEL PEAK 49(21Q21.3) MUTATED DEL PEAK 49(21Q21.3) WILD-TYPE
  CLUS_1                           32                            116
  CLUS_2                           44                            144
  CLUS_3                           49                             38
  CLUS_4                           28                             21
D80V4, multiclass
D80V5, multiclass
        clus
vv       DEL PEAK 49(21Q21.3) MUTATED DEL PEAK 49(21Q21.3) WILD-TYPE
  CLUS_1                           20                             65
  CLUS_2                           22                             53
  CLUS_3                           39                             36
D80V6, multiclass
        clus
vv       DEL PEAK 49(21Q21.3) MUTATED DEL PEAK 49(21Q21.3) WILD-TYPE
  CLUS_1                            5                             18
  CLUS_2                           23                             66
  CLUS_3                           36                             29
  CLUS_4                           17                             41
D80V7, multiclass
D80V8, multiclass
        clus
vv       DEL PEAK 49(21Q21.3) MUTATED DEL PEAK 49(21Q21.3) WILD-TYPE
  CLUS_1                           27                            125
  CLUS_2                           65                             40
  CLUS_3                           30                             65
D80V9, multiclass
        clus
vv       DEL PEAK 49(21Q21.3) MUTATED DEL PEAK 49(21Q21.3) WILD-TYPE
  CLUS_1                           34                            124
  CLUS_2                           82                            101
  CLUS_3                           19                             38
D80V10, multiclass
        clus
vv       DEL PEAK 49(21Q21.3) MUTATED DEL PEAK 49(21Q21.3) WILD-TYPE
  CLUS_1                           35                            128
  CLUS_2                           38                             77
  CLUS_3                           62                             58

Clustering(81) Variable = Del Peak 50(22q13.32) mutation analysis
D81V1, multiclass
        clus
vv       DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE
  CLUS_1                             3                               2
  CLUS_2                             6                               3
  CLUS_3                             2                              10
  CLUS_4                             4                               2
D81V2, multiclass
        clus
vv       DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE
  CLUS_1                             4                               3
  CLUS_2                             3                              10
  CLUS_3                             8                               4
D81V3, multiclass
        clus
vv       DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE
  CLUS_1                            90                              58
  CLUS_2                            49                             139
  CLUS_3                            52                              35
  CLUS_4                            33                              16
D81V4, multiclass
D81V5, multiclass
        clus
vv       DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE
  CLUS_1                            39                              46
  CLUS_2                            30                              45
  CLUS_3                            48                              27
D81V6, multiclass
        clus
vv       DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE
  CLUS_1                            11                              12
  CLUS_2                            45                              44
  CLUS_3                            41                              24
  CLUS_4                            20                              38
D81V7, multiclass
D81V8, multiclass
        clus
vv       DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE
  CLUS_1                            46                             106
  CLUS_2                            71                              34
  CLUS_3                            53                              42
D81V9, multiclass
        clus
vv       DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE
  CLUS_1                            58                             100
  CLUS_2                           111                              72
  CLUS_3                            22                              35
D81V10, multiclass
        clus
vv       DEL PEAK 50(22Q13.32) MUTATED DEL PEAK 50(22Q13.32) WILD-TYPE
  CLUS_1                            51                             112
  CLUS_2                            62                              53
  CLUS_3                            78                              42

Clustering(82) Variable = Del Peak 51(Xp22.2) mutation analysis
D82V1, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                           2                             3
  CLUS_2                           2                             7
  CLUS_3                           4                             8
  CLUS_4                           3                             3
D82V2, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                           3                             4
  CLUS_2                           4                             9
  CLUS_3                           4                             8
D82V3, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                          68                            80
  CLUS_2                          32                           156
  CLUS_3                          25                            62
  CLUS_4                          12                            37
D82V4, multiclass
D82V5, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                          28                            57
  CLUS_2                          15                            60
  CLUS_3                          26                            49
D82V6, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                           7                            16
  CLUS_2                          34                            55
  CLUS_3                          19                            46
  CLUS_4                           9                            49
D82V7, multiclass
D82V8, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                          31                           121
  CLUS_2                          32                            73
  CLUS_3                          40                            55
D82V9, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                          42                           116
  CLUS_2                          58                           125
  CLUS_3                          15                            42
D82V10, multiclass
        clus
vv       DEL PEAK 51(XP22.2) MUTATED DEL PEAK 51(XP22.2) WILD-TYPE
  CLUS_1                          42                           121
  CLUS_2                          36                            79
  CLUS_3                          37                            83
                     V1                      V2                      V3 
            "MRNA_CNMF"    "MRNA_CHIERARCHICAL"               "CN_CNMF" 
                     V4                      V5                      V6 
     "METHLYATION_CNMF"             "RPPA_CNMF"    "RPPA_CHIERARCHICAL" 
                     V7                      V8                      V9 
         "MRNASEQ_CNMF" "MRNASEQ_CHIERARCHICAL"           "MIRSEQ_CNMF" 
                    V10 
 "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
